AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344640 MtrunA17_Chr3g0077201 93.175 337 8 7 1 337 1 322 0.0 622
Msa0344640 MtrunA17_Chr7g0218101 44.177 249 124 7 96 336 47 288 6.50e-57 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344640 AT1G33780.1 65.370 257 76 4 80 336 70 313 2.07e-112 330
Msa0344640 AT3G29240.1 41.803 244 120 5 109 336 75 312 7.48e-54 179
Msa0344640 AT3G29240.2 41.803 244 120 5 109 336 75 312 7.48e-54 179

Find 96 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACCTCTTGAAACAAAA+TGG 0.155587 3_1:-3432103 Msa0344640:CDS
TCTGATTGTTCTCTGCATTT+TGG 0.182538 3_1:-3431867 Msa0344640:CDS
TAGCTCAAGTTTGCTGTATA+AGG 0.253519 3_1:-3431601 Msa0344640:CDS
CATGATTTCAGTTTCTTTGT+TGG 0.269750 3_1:-3431693 Msa0344640:CDS
AAAATCAATAAAAGTGAATA+TGG 0.277350 3_1:-3433688 Msa0344640:exon
TACTCGAATGTCAGATAATT+AGG 0.284320 3_1:-3431401 Msa0344640:three_prime_UTR
CACCCACAAGAAGGGCCTTT+TGG 0.291430 3_1:-3431966 Msa0344640:CDS
GGAGAGAAGTTGAAGCTTCC+AGG 0.302782 3_1:-3431807 Msa0344640:CDS
AGTTTCTTTGTTGGTTATGC+TGG 0.346630 3_1:-3431684 Msa0344640:CDS
ATCTGAATTATTAGTACCTA+TGG 0.354082 3_1:+3431484 None:intergenic
GCTGGTATTGCTGTGGCTTC+CGG 0.377196 3_1:+3431512 None:intergenic
GTAGTCCCTGGTCTATATTA+TGG 0.381600 3_1:-3431774 Msa0344640:CDS
CAGATTCTTCTGAAGGTTTG+TGG 0.391415 3_1:-3431572 Msa0344640:CDS
GTTGAGAAAACATTGATTCA+TGG 0.391724 3_1:+3431223 None:intergenic
TTAGTACCTATGGGTCTTGC+TGG 0.399257 3_1:+3431494 None:intergenic
CCGTGGTGGTCATGTTAATC+TGG 0.405342 3_1:-3433163 Msa0344640:CDS
CAGAATAAAATGAATTGGTT+GGG 0.406618 3_1:+3433628 None:intergenic
CCCGCCTTCTTTGTGTGTAT+CGG 0.407328 3_1:+3432139 None:intergenic
GTTATTCTCCTTCTAAGATC+TGG 0.410814 3_1:-3431996 Msa0344640:CDS
CCAGTCTCAGGTACAGGAAT+AGG 0.419654 3_1:+3432074 None:intergenic
CAAACCTCTTGAAACAAAAT+GGG 0.422046 3_1:-3432102 Msa0344640:CDS
TGCTTCATATCTTGTCCCTA+GGG 0.430039 3_1:+3431179 None:intergenic
GTCTAGTTCCAGATCTTAGA+AGG 0.431238 3_1:+3431988 None:intergenic
TGTTCCAGAATAAAATGAAT+TGG 0.441229 3_1:+3433623 None:intergenic
AGATTCTTCTGAAGGTTTGT+GGG 0.444169 3_1:-3431571 Msa0344640:CDS
TTCCAAAAGGCCCTTCTTGT+GGG 0.447471 3_1:+3431964 None:intergenic
TTAGCAGTGACAACAAGAAA+TGG 0.448377 3_1:+3433519 None:intergenic
AATCACGGCGGAGGTGGAGG+AGG 0.449102 3_1:-3433465 Msa0344640:CDS
CACGGCGGAGGTGGAGGAGG+AGG 0.453111 3_1:-3433462 Msa0344640:CDS
AACAATAATCACGGCGGAGG+TGG 0.457273 3_1:-3433471 Msa0344640:CDS
GGCGGAGGTGGAGGAGGAGG+AGG 0.457665 3_1:-3433459 Msa0344640:intron
TTGCTTCATATCTTGTCCCT+AGG 0.458293 3_1:+3431178 None:intergenic
TTGTTTACAGTTAATGATCT+CGG 0.459996 3_1:+3433572 None:intergenic
TGCAGCAGGGCTTGTGAAGA+AGG 0.465727 3_1:-3431730 Msa0344640:CDS
GTGGCTACCGACAAGCTTGA+TGG 0.470507 3_1:-3432041 Msa0344640:CDS
CCAGAATAAAATGAATTGGT+TGG 0.476573 3_1:+3433627 None:intergenic
CCTATTCCTGTACCTGAGAC+TGG 0.480085 3_1:-3432074 Msa0344640:CDS
TGATAATAATTCAACACGAT+TGG 0.482951 3_1:+3433725 None:intergenic
AATAATCACGGCGGAGGTGG+AGG 0.494325 3_1:-3433468 Msa0344640:CDS
AACTGTTTAGATGATGCAGC+AGG 0.499367 3_1:-3431744 Msa0344640:CDS
TGGTTATGCTGGATGGCAAA+TGG 0.500950 3_1:-3431673 Msa0344640:CDS
ACAAGTACACAGCCAGTCTC+AGG 0.508596 3_1:+3432062 None:intergenic
ATTCCAAAAGGCCCTTCTTG+TGG 0.511329 3_1:+3431963 None:intergenic
TGTTTAATCTTCTTGTGAAG+AGG 0.512942 3_1:+3431927 None:intergenic
GGGACTACCTCTTCAAATCC+TGG 0.516956 3_1:+3431789 None:intergenic
TAGCAGTGACAACAAGAAAT+GGG 0.520121 3_1:+3433520 None:intergenic
GAGAATAACAGTTCTTTCAA+AGG 0.520498 3_1:+3432010 None:intergenic
GTGGTCATGTTAATCTGGAT+TGG 0.533501 3_1:-3433158 Msa0344640:CDS
GCTTTGACAGATTCTTCTGA+AGG 0.533529 3_1:-3431579 Msa0344640:CDS
CGAGCTCCATAATATAGACC+AGG 0.539007 3_1:+3431768 None:intergenic
TCTTTGTTGGTTATGCTGGA+TGG 0.540720 3_1:-3431680 Msa0344640:CDS
TAAACTATATAGAGATGAGC+TGG 0.545843 3_1:-3433121 Msa0344640:intron
CTTCTTGTTCTTCTTGCCGC+CGG 0.547442 3_1:+3433494 None:intergenic
CCGATACACACAAAGAAGGC+GGG 0.549826 3_1:-3432139 Msa0344640:CDS
GCGAATACCATCAAGCTTGT+CGG 0.551494 3_1:+3432034 None:intergenic
TCTGAATTATTAGTACCTAT+GGG 0.556246 3_1:+3431485 None:intergenic
GCAGCAGGGCTTGTGAAGAA+GGG 0.558137 3_1:-3431729 Msa0344640:CDS
ACACAGCCAGTCTCAGGTAC+AGG 0.559250 3_1:+3432068 None:intergenic
ATGAAATTGAGTCAGAGTAT+TGG 0.561047 3_1:-3431638 Msa0344640:CDS
ATGGGTACGCAGGATTGAGC+CGG 0.561903 3_1:-3431531 Msa0344640:exon
GCAATACCAGCAAGACCCAT+AGG 0.564699 3_1:-3431500 Msa0344640:three_prime_UTR
GGAACTAGACACCCACAAGA+AGG 0.566894 3_1:-3431975 Msa0344640:CDS
TGAGACTGGCTGTGTACTTG+TGG 0.571797 3_1:-3432060 Msa0344640:CDS
GGATTTGAAGAGGTAGTCCC+TGG 0.577229 3_1:-3431786 Msa0344640:CDS
AATTGATGCATGTAAAATGT+TGG 0.577452 3_1:-3431452 Msa0344640:three_prime_UTR
GGGTCTTGCTGGTATTGCTG+TGG 0.585429 3_1:+3431505 None:intergenic
TTCTTCTGAAGGTTTGTGGG+AGG 0.586761 3_1:-3431568 Msa0344640:CDS
CGATTGATGACAATTCCAAA+AGG 0.587218 3_1:+3431951 None:intergenic
CAGCAGGGCTTGTGAAGAAG+GGG 0.599227 3_1:-3431728 Msa0344640:CDS
AAGAACAATAATCACGGCGG+AGG 0.604640 3_1:-3433474 Msa0344640:CDS
ATGCAGAGAACAATCAGAGA+AGG 0.607603 3_1:+3431872 None:intergenic
TGACAACAAGAAATGGGATG+CGG 0.608709 3_1:+3433526 None:intergenic
GAAGCTTCCAGGATTTGAAG+AGG 0.610660 3_1:-3431796 Msa0344640:CDS
GAACTAGACACCCACAAGAA+GGG 0.612099 3_1:-3431974 Msa0344640:CDS
CAGAGAACAATCAGAGAAGG+TGG 0.616018 3_1:+3431875 None:intergenic
GATGCCGATACACACAAAGA+AGG 0.619105 3_1:-3432143 Msa0344640:CDS
TTTGCAACTTATGGGTACGC+AGG 0.620393 3_1:-3431541 Msa0344640:CDS
CTTGTTGTCACTGCTAACGC+CGG 0.621404 3_1:-3433513 Msa0344640:CDS
AACAAGAAGAACAATAATCA+CGG 0.628711 3_1:-3433480 Msa0344640:CDS
CGATACACACAAAGAAGGCG+GGG 0.630007 3_1:-3432138 Msa0344640:CDS
GCCGATACACACAAAGAAGG+CGG 0.635205 3_1:-3432140 Msa0344640:CDS
ACAAAGAAACTGAAATCATG+AGG 0.637763 3_1:+3431696 None:intergenic
CAACAAGAAATGGGATGCGG+CGG 0.642061 3_1:+3433529 None:intergenic
TGAGTCAGAGTATTGGTATG+TGG 0.643034 3_1:-3431631 Msa0344640:CDS
GGTGACCAGTCTATTCCAGA+AGG 0.645000 3_1:-3433234 Msa0344640:CDS
ACTGTTTAGATGATGCAGCA+GGG 0.653857 3_1:-3431743 Msa0344640:CDS
GTTGTCACTGCTAACGCCGG+CGG 0.656759 3_1:-3433510 Msa0344640:CDS
ATAGAAAACTAAAAGCAAGA+CGG 0.665000 3_1:+3431366 None:intergenic
GAGCTCCATAATATAGACCA+GGG 0.684906 3_1:+3431769 None:intergenic
TTTACAGTTAATGATCTCGG+CGG 0.719903 3_1:+3433575 None:intergenic
CCAGATTAACATGACCACCA+CGG 0.729731 3_1:+3433163 None:intergenic
TTCTCAACCTATGAACAACG+TGG 0.739052 3_1:-3431208 Msa0344640:three_prime_UTR
TCTCAGAATGAGAACCGTGG+TGG 0.747290 3_1:-3433177 Msa0344640:CDS
AACTCTCAGAATGAGAACCG+TGG 0.749394 3_1:-3433180 Msa0344640:CDS
AAGAAGAACAATAATCACGG+CGG 0.784381 3_1:-3433477 Msa0344640:CDS
AAAGTGAATATGGATCTGTG+TGG 0.831813 3_1:-3433678 Msa0344640:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCAATAAAAGTGAATA+TGG - chr3_1:3431277-3431296 Msa0344640:three_prime_UTR 15.0%
!!! TTTTAAAAGCATAGTAAAAT+TGG + chr3_1:3431621-3431640 None:intergenic 15.0%
!! TTATACATGATACATAATTA+TGG - chr3_1:3432150-3432169 Msa0344640:CDS 15.0%
!!! GATTTGTATCATTTTATTTA+TGG - chr3_1:3432448-3432467 Msa0344640:intron 15.0%
!! TTAAGGATTTATACAATAAA+TGG - chr3_1:3432542-3432561 Msa0344640:intron 15.0%
!!! TGAAAACATATTTGAAATTA+TGG - chr3_1:3432578-3432597 Msa0344640:intron 15.0%
!!! ATATTTGAAATTATGGAAAA+CGG - chr3_1:3432585-3432604 Msa0344640:intron 15.0%
!! TATCGTCTAATGATTAATAT+TGG - chr3_1:3432397-3432416 Msa0344640:intron 20.0%
!!! GTTACTAAATCATGATTTTT+AGG + chr3_1:3433071-3433090 None:intergenic 20.0%
!!! TTTTAGTTTTCTATCAATAG+AGG - chr3_1:3433608-3433627 Msa0344640:CDS 20.0%
! TGATAATAATTCAACACGAT+TGG + chr3_1:3431243-3431262 None:intergenic 25.0%
! CAGAATAAAATGAATTGGTT+GGG + chr3_1:3431340-3431359 None:intergenic 25.0%
! TGTTCCAGAATAAAATGAAT+TGG + chr3_1:3431345-3431364 None:intergenic 25.0%
! TTGTTTACAGTTAATGATCT+CGG + chr3_1:3431396-3431415 None:intergenic 25.0%
! AACAAGAAGAACAATAATCA+CGG - chr3_1:3431485-3431504 Msa0344640:three_prime_UTR 25.0%
! ATTATCATTAGTGCTTCTAT+GGG + chr3_1:3432046-3432065 None:intergenic 25.0%
! GAGAGACTAAAAAAAGTTAT+AGG - chr3_1:3432103-3432122 Msa0344640:CDS 25.0%
! AAAAAGTTATAGGAAGTCAA+TGG - chr3_1:3432113-3432132 Msa0344640:CDS 25.0%
! AATCATACTTGATAGATAGT+TGG - chr3_1:3432281-3432300 Msa0344640:intron 25.0%
! TTAATGACAAGTTCATCAAA+AGG + chr3_1:3432317-3432336 None:intergenic 25.0%
! ACCAAGTTATAGAAAAATGA+AGG - chr3_1:3432422-3432441 Msa0344640:intron 25.0%
! CCAAGTTATAGAAAAATGAA+GGG - chr3_1:3432423-3432442 Msa0344640:intron 25.0%
! CTTAATAACAAGTACAAACA+AGG + chr3_1:3432527-3432546 None:intergenic 25.0%
!!! CTTGTTTGTACTTGTTATTA+AGG - chr3_1:3432525-3432544 Msa0344640:intron 25.0%
! ATAGATACATAGAATGCAAA+AGG + chr3_1:3432658-3432677 None:intergenic 25.0%
! TCTGAATTATTAGTACCTAT+GGG + chr3_1:3433483-3433502 None:intergenic 25.0%
! ATCTGAATTATTAGTACCTA+TGG + chr3_1:3433484-3433503 None:intergenic 25.0%
! AATTGATGCATGTAAAATGT+TGG - chr3_1:3433513-3433532 Msa0344640:CDS 25.0%
! ATAGAAAACTAAAAGCAAGA+CGG + chr3_1:3433602-3433621 None:intergenic 25.0%
CCAGAATAAAATGAATTGGT+TGG + chr3_1:3431341-3431360 None:intergenic 30.0%
! CCAACCAATTCATTTTATTC+TGG - chr3_1:3431338-3431357 Msa0344640:three_prime_UTR 30.0%
AGATTAATCAACAACACAAC+AGG + chr3_1:3431696-3431715 None:intergenic 30.0%
GTTGATTAATCTAACCTTAC+AGG - chr3_1:3431704-3431723 Msa0344640:CDS 30.0%
TAATCTAACCTTACAGGTAA+TGG - chr3_1:3431710-3431729 Msa0344640:CDS 30.0%
!!! CCATTATTATTTTTGCCTTC+TGG + chr3_1:3431749-3431768 None:intergenic 30.0%
CCAGAAGGCAAAAATAATAA+TGG - chr3_1:3431746-3431765 Msa0344640:CDS 30.0%
TAAACTATATAGAGATGAGC+TGG - chr3_1:3431844-3431863 Msa0344640:CDS 30.0%
GAATGAAGTTATTCCAATTC+AGG + chr3_1:3431957-3431976 None:intergenic 30.0%
TCATTCCATTGTAGAAAAGA+TGG - chr3_1:3431971-3431990 Msa0344640:CDS 30.0%
CATTATCATTAGTGCTTCTA+TGG + chr3_1:3432047-3432066 None:intergenic 30.0%
!! CATAGAAGCACTAATGATAA+TGG - chr3_1:3432045-3432064 Msa0344640:CDS 30.0%
!! CCCTTCATTTTTCTATAACT+TGG + chr3_1:3432426-3432445 None:intergenic 30.0%
!! CATTTTATTTATGGCTCGTT+TGG - chr3_1:3432457-3432476 Msa0344640:intron 30.0%
ATTGATGTAGAAGCTACTAT+TGG - chr3_1:3432697-3432716 Msa0344640:intron 30.0%
CAAACCTCTTGAAACAAAAT+GGG - chr3_1:3432863-3432882 Msa0344640:intron 30.0%
GAGAATAACAGTTCTTTCAA+AGG + chr3_1:3432958-3432977 None:intergenic 30.0%
TGTTTAATCTTCTTGTGAAG+AGG + chr3_1:3433041-3433060 None:intergenic 30.0%
!! AGCATGTTTTTGCTAAAATC+AGG - chr3_1:3433137-3433156 Msa0344640:CDS 30.0%
ACAAAGAAACTGAAATCATG+AGG + chr3_1:3433272-3433291 None:intergenic 30.0%
CATGATTTCAGTTTCTTTGT+TGG - chr3_1:3433272-3433291 Msa0344640:intron 30.0%
ATGAAATTGAGTCAGAGTAT+TGG - chr3_1:3433327-3433346 Msa0344640:intron 30.0%
TACTCGAATGTCAGATAATT+AGG - chr3_1:3433564-3433583 Msa0344640:CDS 30.0%
!! GTTGAGAAAACATTGATTCA+TGG + chr3_1:3433745-3433764 None:intergenic 30.0%
AAAGTGAATATGGATCTGTG+TGG - chr3_1:3431287-3431306 Msa0344640:three_prime_UTR 35.0%
TTTACAGTTAATGATCTCGG+CGG + chr3_1:3431393-3431412 None:intergenic 35.0%
TAGCAGTGACAACAAGAAAT+GGG + chr3_1:3431448-3431467 None:intergenic 35.0%
TTAGCAGTGACAACAAGAAA+TGG + chr3_1:3431449-3431468 None:intergenic 35.0%
AAGAAGAACAATAATCACGG+CGG - chr3_1:3431488-3431507 Msa0344640:three_prime_UTR 35.0%
!! AAAATTGGTTTGCAGGTTGA+TGG + chr3_1:3431606-3431625 None:intergenic 35.0%
!! GCATAGTAAAATTGGTTTGC+AGG + chr3_1:3431613-3431632 None:intergenic 35.0%
TTAATCAACAACACAACAGG+CGG + chr3_1:3431693-3431712 None:intergenic 35.0%
! CTCTACCATCTTTTCTACAA+TGG + chr3_1:3431979-3431998 None:intergenic 35.0%
! AGTCTTGTCATAACCCATAT+AGG - chr3_1:3431997-3432016 Msa0344640:CDS 35.0%
!! GAAGCACTAATGATAATGGT+TGG - chr3_1:3432049-3432068 Msa0344640:CDS 35.0%
TCAGAAGTCCAATAGTTAAG+AGG - chr3_1:3432076-3432095 Msa0344640:CDS 35.0%
TCTCTCTACCTCTTAACTAT+TGG + chr3_1:3432087-3432106 None:intergenic 35.0%
CAATTAACCTTTATCCCACT+AGG + chr3_1:3432204-3432223 None:intergenic 35.0%
GGGATAAAGGTTAATTGTCA+AGG - chr3_1:3432207-3432226 Msa0344640:intron 35.0%
! ATTAATCTAAGATGCCTCCT+TGG - chr3_1:3432332-3432351 Msa0344640:intron 35.0%
TAGACGATAAACACCTCAAT+GGG + chr3_1:3432386-3432405 None:intergenic 35.0%
TTAGACGATAAACACCTCAA+TGG + chr3_1:3432387-3432406 None:intergenic 35.0%
TAGAATGCAAAAGGCGAAAA+AGG + chr3_1:3432649-3432668 None:intergenic 35.0%
CCTGTATTGCTTCTTAGATA+TGG + chr3_1:3432733-3432752 None:intergenic 35.0%
CCATATCTAAGAAGCAATAC+AGG - chr3_1:3432730-3432749 Msa0344640:intron 35.0%
!! CCATTTTGTTTCAAGAGGTT+TGG + chr3_1:3432865-3432884 None:intergenic 35.0%
CCAAACCTCTTGAAACAAAA+TGG - chr3_1:3432862-3432881 Msa0344640:intron 35.0%
!! GTTATTCTCCTTCTAAGATC+TGG - chr3_1:3432969-3432988 Msa0344640:intron 35.0%
! CGATTGATGACAATTCCAAA+AGG + chr3_1:3433017-3433036 None:intergenic 35.0%
! TCTGATTGTTCTCTGCATTT+TGG - chr3_1:3433098-3433117 Msa0344640:intron 35.0%
! AGTTTCTTTGTTGGTTATGC+TGG - chr3_1:3433281-3433300 Msa0344640:intron 35.0%
!! TAGCTCAAGTTTGCTGTATA+AGG - chr3_1:3433364-3433383 Msa0344640:intron 35.0%
! AGATTCTTCTGAAGGTTTGT+GGG - chr3_1:3433394-3433413 Msa0344640:intron 35.0%
! GAGGAGATTTTGCAACTTAT+GGG - chr3_1:3433416-3433435 Msa0344640:intron 35.0%
!! CTTTTGTTGTGTTTGTGCAT+TGG + chr3_1:3433712-3433731 None:intergenic 35.0%
! GATTTTTCCACGTTGTTCAT+AGG + chr3_1:3433767-3433786 None:intergenic 35.0%
TGACAACAAGAAATGGGATG+CGG + chr3_1:3431442-3431461 None:intergenic 40.0%
!!! TTTTGCCTTCTGGAATAGAC+TGG + chr3_1:3431739-3431758 None:intergenic 40.0%
GTGGTCATGTTAATCTGGAT+TGG - chr3_1:3431807-3431826 Msa0344640:CDS 40.0%
TGTACCTCTGTCTGTTTAAG+TGG - chr3_1:3431918-3431937 Msa0344640:CDS 40.0%
TTCGAGTCAACTTCCTGAAT+TGG - chr3_1:3431941-3431960 Msa0344640:CDS 40.0%
CTTGTCATAACCCATATAGG+TGG - chr3_1:3432000-3432019 Msa0344640:CDS 40.0%
CATAACCCATATAGGTGGTT+TGG - chr3_1:3432005-3432024 Msa0344640:CDS 40.0%
CATGTCCAAACCACCTATAT+GGG + chr3_1:3432013-3432032 None:intergenic 40.0%
ACATGTCCAAACCACCTATA+TGG + chr3_1:3432014-3432033 None:intergenic 40.0%
! ATAGGTGGTTTGGACATGTT+TGG - chr3_1:3432015-3432034 Msa0344640:CDS 40.0%
TTAACCTTTATCCCACTAGG+TGG + chr3_1:3432201-3432220 None:intergenic 40.0%
!! TGAGCCCATTTTGTTTCAAG+AGG + chr3_1:3432870-3432889 None:intergenic 40.0%
! GTCTAGTTCCAGATCTTAGA+AGG + chr3_1:3432980-3432999 None:intergenic 40.0%
ATGCAGAGAACAATCAGAGA+AGG + chr3_1:3433096-3433115 None:intergenic 40.0%
! GATTGTTCTCTGCATTTTGG+TGG - chr3_1:3433101-3433120 Msa0344640:intron 40.0%
AAAAACATGCTTGCCTCAAG+AGG + chr3_1:3433128-3433147 None:intergenic 40.0%
GTAGTCCCTGGTCTATATTA+TGG - chr3_1:3433191-3433210 Msa0344640:CDS 40.0%
GAGCTCCATAATATAGACCA+GGG + chr3_1:3433199-3433218 None:intergenic 40.0%
AACTGTTTAGATGATGCAGC+AGG - chr3_1:3433221-3433240 Msa0344640:CDS 40.0%
ACTGTTTAGATGATGCAGCA+GGG - chr3_1:3433222-3433241 Msa0344640:CDS 40.0%
! TCTTTGTTGGTTATGCTGGA+TGG - chr3_1:3433285-3433304 Msa0344640:intron 40.0%
!! TGAGTCAGAGTATTGGTATG+TGG - chr3_1:3433334-3433353 Msa0344640:intron 40.0%
GCTTTGACAGATTCTTCTGA+AGG - chr3_1:3433386-3433405 Msa0344640:intron 40.0%
! CAGATTCTTCTGAAGGTTTG+TGG - chr3_1:3433393-3433412 Msa0344640:intron 40.0%
! GGAGGAGATTTTGCAACTTA+TGG - chr3_1:3433415-3433434 Msa0344640:intron 40.0%
TTCTCAACCTATGAACAACG+TGG - chr3_1:3433757-3433776 Msa0344640:five_prime_UTR 40.0%
AACAACGTGGAAAAATCCCT+AGG - chr3_1:3433770-3433789 Msa0344640:five_prime_UTR 40.0%
ACAACGTGGAAAAATCCCTA+GGG - chr3_1:3433771-3433790 Msa0344640:five_prime_UTR 40.0%
TGCTTCATATCTTGTCCCTA+GGG + chr3_1:3433789-3433808 None:intergenic 40.0%
TTGCTTCATATCTTGTCCCT+AGG + chr3_1:3433790-3433809 None:intergenic 40.0%
AAGAACAATAATCACGGCGG+AGG - chr3_1:3431491-3431510 Msa0344640:three_prime_UTR 45.0%
ACTGGTCACCATTACCTGTA+AGG + chr3_1:3431721-3431740 None:intergenic 45.0%
AACTCTCAGAATGAGAACCG+TGG - chr3_1:3431785-3431804 Msa0344640:CDS 45.0%
CCAGATTAACATGACCACCA+CGG + chr3_1:3431805-3431824 None:intergenic 45.0%
CGAACCACTTAAACAGACAG+AGG + chr3_1:3431925-3431944 None:intergenic 45.0%
ATTCAGAAGACTCCACCTAG+TGG - chr3_1:3432186-3432205 Msa0344640:intron 45.0%
TTCAGAAGACTCCACCTAGT+GGG - chr3_1:3432187-3432206 Msa0344640:intron 45.0%
TGACTGTATCTGTCCCATTG+AGG - chr3_1:3432370-3432389 Msa0344640:intron 45.0%
GGAGCAACTTACTCGATGTT+AGG - chr3_1:3432751-3432770 Msa0344640:intron 45.0%
GATGCCGATACACACAAAGA+AGG - chr3_1:3432822-3432841 Msa0344640:intron 45.0%
GCGAATACCATCAAGCTTGT+CGG + chr3_1:3432934-3432953 None:intergenic 45.0%
GAACTAGACACCCACAAGAA+GGG - chr3_1:3432991-3433010 Msa0344640:intron 45.0%
TTCCAAAAGGCCCTTCTTGT+GGG + chr3_1:3433004-3433023 None:intergenic 45.0%
ATTCCAAAAGGCCCTTCTTG+TGG + chr3_1:3433005-3433024 None:intergenic 45.0%
CAGAGAACAATCAGAGAAGG+TGG + chr3_1:3433093-3433112 None:intergenic 45.0%
GAAGCTTCCAGGATTTGAAG+AGG - chr3_1:3433169-3433188 Msa0344640:CDS 45.0%
CGAGCTCCATAATATAGACC+AGG + chr3_1:3433200-3433219 None:intergenic 45.0%
TGGTTATGCTGGATGGCAAA+TGG - chr3_1:3433292-3433311 Msa0344640:intron 45.0%
! TTCTTCTGAAGGTTTGTGGG+AGG - chr3_1:3433397-3433416 Msa0344640:intron 45.0%
TTTGCAACTTATGGGTACGC+AGG - chr3_1:3433424-3433443 Msa0344640:intron 45.0%
TTAGTACCTATGGGTCTTGC+TGG + chr3_1:3433474-3433493 None:intergenic 45.0%
CAACAAGAAATGGGATGCGG+CGG + chr3_1:3431439-3431458 None:intergenic 50.0%
! CTTGTTGTCACTGCTAACGC+CGG - chr3_1:3431452-3431471 Msa0344640:three_prime_UTR 50.0%
CTTCTTGTTCTTCTTGCCGC+CGG + chr3_1:3431474-3431493 None:intergenic 50.0%
AACAATAATCACGGCGGAGG+TGG - chr3_1:3431494-3431513 Msa0344640:three_prime_UTR 50.0%
GGTGACCAGTCTATTCCAGA+AGG - chr3_1:3431731-3431750 Msa0344640:CDS 50.0%
TCTCAGAATGAGAACCGTGG+TGG - chr3_1:3431788-3431807 Msa0344640:CDS 50.0%
CCGTGGTGGTCATGTTAATC+TGG - chr3_1:3431802-3431821 Msa0344640:CDS 50.0%
GACTCCACCTAGTGGGATAA+AGG - chr3_1:3432194-3432213 Msa0344640:intron 50.0%
CTAAGATGCCTCCTTGGTTG+AGG - chr3_1:3432338-3432357 Msa0344640:intron 50.0%
CATGTTGTCAGCCTCAACCA+AGG + chr3_1:3432352-3432371 None:intergenic 50.0%
GCCGATACACACAAAGAAGG+CGG - chr3_1:3432825-3432844 Msa0344640:intron 50.0%
CCCGCCTTCTTTGTGTGTAT+CGG + chr3_1:3432829-3432848 None:intergenic 50.0%
CCGATACACACAAAGAAGGC+GGG - chr3_1:3432826-3432845 Msa0344640:intron 50.0%
CGATACACACAAAGAAGGCG+GGG - chr3_1:3432827-3432846 Msa0344640:intron 50.0%
CCAGTCTCAGGTACAGGAAT+AGG + chr3_1:3432894-3432913 None:intergenic 50.0%
CCTATTCCTGTACCTGAGAC+TGG - chr3_1:3432891-3432910 Msa0344640:intron 50.0%
ACAAGTACACAGCCAGTCTC+AGG + chr3_1:3432906-3432925 None:intergenic 50.0%
! TGAGACTGGCTGTGTACTTG+TGG - chr3_1:3432905-3432924 Msa0344640:intron 50.0%
GGAACTAGACACCCACAAGA+AGG - chr3_1:3432990-3433009 Msa0344640:intron 50.0%
!! GCATTTTGGTGGACCTCTTG+AGG - chr3_1:3433112-3433131 Msa0344640:intron 50.0%
GGAGAGAAGTTGAAGCTTCC+AGG - chr3_1:3433158-3433177 Msa0344640:CDS 50.0%
GGGACTACCTCTTCAAATCC+TGG + chr3_1:3433179-3433198 None:intergenic 50.0%
GGATTTGAAGAGGTAGTCCC+TGG - chr3_1:3433179-3433198 Msa0344640:CDS 50.0%
GCAATACCAGCAAGACCCAT+AGG - chr3_1:3433465-3433484 Msa0344640:CDS 50.0%
AATAATCACGGCGGAGGTGG+AGG - chr3_1:3431497-3431516 Msa0344640:three_prime_UTR 55.0%
GTTGTCAGCCTCAACCAAGG+AGG + chr3_1:3432349-3432368 None:intergenic 55.0%
ACACAGCCAGTCTCAGGTAC+AGG + chr3_1:3432900-3432919 None:intergenic 55.0%
GTGGCTACCGACAAGCTTGA+TGG - chr3_1:3432924-3432943 Msa0344640:intron 55.0%
! CACCCACAAGAAGGGCCTTT+TGG - chr3_1:3432999-3433018 Msa0344640:intron 55.0%
TGCAGCAGGGCTTGTGAAGA+AGG - chr3_1:3433235-3433254 Msa0344640:CDS 55.0%
GCAGCAGGGCTTGTGAAGAA+GGG - chr3_1:3433236-3433255 Msa0344640:CDS 55.0%
CAGCAGGGCTTGTGAAGAAG+GGG - chr3_1:3433237-3433256 Msa0344640:CDS 55.0%
ATGGGTACGCAGGATTGAGC+CGG - chr3_1:3433434-3433453 Msa0344640:intron 55.0%
GCTGGTATTGCTGTGGCTTC+CGG + chr3_1:3433456-3433475 None:intergenic 55.0%
GGGTCTTGCTGGTATTGCTG+TGG + chr3_1:3433463-3433482 None:intergenic 55.0%
GTTGTCACTGCTAACGCCGG+CGG - chr3_1:3431455-3431474 Msa0344640:three_prime_UTR 60.0%
AATCACGGCGGAGGTGGAGG+AGG - chr3_1:3431500-3431519 Msa0344640:three_prime_UTR 65.0%
CACGGCGGAGGTGGAGGAGG+AGG - chr3_1:3431503-3431522 Msa0344640:three_prime_UTR 75.0%
GGCGGAGGTGGAGGAGGAGG+AGG - chr3_1:3431506-3431525 Msa0344640:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 3431173 3433814 3431173 ID=Msa0344640;Name=Msa0344640
chr3_1 mRNA 3431173 3433814 3431173 ID=Msa0344640-mRNA-1;Parent=Msa0344640;Name=Msa0344640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123|1|1|1|1|1|3|363|337
chr3_1 exon 3431173 3432177 3431173 ID=Msa0344640-mRNA-1:exon:1077;Parent=Msa0344640-mRNA-1
chr3_1 exon 3433122 3433261 3433122 ID=Msa0344640-mRNA-1:exon:1076;Parent=Msa0344640-mRNA-1
chr3_1 exon 3433460 3433814 3433460 ID=Msa0344640-mRNA-1:exon:1075;Parent=Msa0344640-mRNA-1
chr3_1 five_prime_UTR 3433692 3433814 3433692 ID=Msa0344640-mRNA-1:five_prime_utr;Parent=Msa0344640-mRNA-1
chr3_1 CDS 3433460 3433691 3433460 ID=Msa0344640-mRNA-1:cds;Parent=Msa0344640-mRNA-1
chr3_1 CDS 3433122 3433261 3433122 ID=Msa0344640-mRNA-1:cds;Parent=Msa0344640-mRNA-1
chr3_1 CDS 3431536 3432177 3431536 ID=Msa0344640-mRNA-1:cds;Parent=Msa0344640-mRNA-1
chr3_1 three_prime_UTR 3431173 3431535 3431173 ID=Msa0344640-mRNA-1:three_prime_utr;Parent=Msa0344640-mRNA-1
Gene Sequence

>Msa0344640

ATGGATCTGTGTGGCGTTAATGTGAAGAACAATCTTTTGTACCCAACCAATTCATTTTATTCTGGAACAACAAGATCATCATCTTTTTACAACGCCGCCGAGATCATTAACTGTAAACAACAACAACAACACTTTCAACGCCGCCGCATCCCATTTCTTGTTGTCACTGCTAACGCCGGCGGCAAGAAGAACAAGAAGAACAATAATCACGGCGGAGGTGGAGGAGGAGGAGGTAATGGTGACCAGTCTATTCCAGAAGGCAAAAATAATAATGGTGATAAATCAAATAACAACTCTCAGAATGAGAACCGTGGTGGTCATGTTAATCTGGATTGGCGTGAATTCAGAGCTAAACTATATAGAGATGAGCTGAAAGAAATAGCAGATGCCGATACACACAAAGAAGGCGGGGCATTACACATTTCCAAACCTCTTGAAACAAAATGGGCTCATCCTATTCCTGTACCTGAGACTGGCTGTGTACTTGTGGCTACCGACAAGCTTGATGGTATTCGCACCTTTGAAAGAACTGTTATTCTCCTTCTAAGATCTGGAACTAGACACCCACAAGAAGGGCCTTTTGGAATTGTCATCAATCGTCCTCTTCACAAGAAGATTAAACAGATGAATCCTAAAAATCATGATTTAGTAACCACCTTCTCTGATTGTTCTCTGCATTTTGGTGGACCTCTTGAGGCAAGCATGTTTTTGCTAAAATCAGGAGAGAAGTTGAAGCTTCCAGGATTTGAAGAGGTAGTCCCTGGTCTATATTATGGAGCTCGAAACTGTTTAGATGATGCAGCAGGGCTTGTGAAGAAGGGGATTATCAAGCCTCATGATTTCAGTTTCTTTGTTGGTTATGCTGGATGGCAAATGGATCAGTTGCGAGATGAAATTGAGTCAGAGTATTGGTATGTGGCTGCATGTAGCTCAAGTTTGCTGTATAAGGCTTTGACAGATTCTTCTGAAGGTTTGTGGGAGGAGATTTTGCAACTTATGGGTACGCAGGATTGA

Protein sequence

>Msa0344640

MDLCGVNVKNNLLYPTNSFYSGTTRSSSFYNAAEIINCKQQQQHFQRRRIPFLVVTANAGGKKNKKNNNHGGGGGGGGNGDQSIPEGKNNNGDKSNNNSQNENRGGHVNLDWREFRAKLYRDELKEIADADTHKEGGALHISKPLETKWAHPIPVPETGCVLVATDKLDGIRTFERTVILLLRSGTRHPQEGPFGIVINRPLHKKIKQMNPKNHDLVTTFSDCSLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNCLDDAAGLVKKGIIKPHDFSFFVGYAGWQMDQLRDEIESEYWYVAACSSSLLYKALTDSSEGLWEEILQLMGTQD*