AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469970 MtrunA17_Chr3g0077201 100.000 129 0 0 1 129 194 322 3.21e-93 271
Msa0469970 MtrunA17_Chr7g0218101 45.161 124 65 2 7 128 166 288 2.61e-29 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469970 AT1G33780.1 70.312 128 35 1 1 128 189 313 2.02e-60 189
Msa0469970 AT3G29240.1 44.882 127 65 2 7 128 186 312 8.06e-28 104
Msa0469970 AT3G29240.2 44.882 127 65 2 7 128 186 312 8.06e-28 104

Find 96 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGTCTTCTTTCTTTCT+TGG 0.121045 3_3:+72022775 Msa0469970:five_prime_UTR
CCAAACCTCTTGAAACAAAA+TGG 0.155587 3_3:+72024499 Msa0469970:five_prime_UTR
TCTGATTGTTCTCTGCATTT+TGG 0.182538 3_3:+72024735 Msa0469970:CDS
TAGCTCAAGTTTGCTGTATA+AGG 0.253519 3_3:+72025001 Msa0469970:CDS
CATGATTTCAGTTTCTTTGT+TGG 0.269750 3_3:+72024909 Msa0469970:CDS
AAAATCAATAAAAGTGAATA+TGG 0.277350 3_3:+72022955 Msa0469970:five_prime_UTR
TACTCGAATGTCAGATAATT+AGG 0.284320 3_3:+72025201 Msa0469970:three_prime_UTR
CACCCACAAGAAGGGCCTTT+TGG 0.291430 3_3:+72024636 Msa0469970:five_prime_UTR
GGAGAGAAGTTGAAGCTTCC+AGG 0.302782 3_3:+72024795 Msa0469970:CDS
AGTTTCTTTGTTGGTTATGC+TGG 0.346630 3_3:+72024918 Msa0469970:CDS
ATCTGAATTATTAGTACCTA+TGG 0.354082 3_3:-72025118 None:intergenic
GCTGGTATTGCTGTGGCTTC+CGG 0.377196 3_3:-72025090 None:intergenic
GTAGTCCCTGGTCTATATTA+TGG 0.381600 3_3:+72024828 Msa0469970:CDS
CAGATTCTTCTGAAGGTTTG+TGG 0.391415 3_3:+72025030 Msa0469970:CDS
GTTGAGAAAACATTGATTCA+TGG 0.391724 3_3:-72025379 None:intergenic
TTAGTACCTATGGGTCTTGC+TGG 0.399257 3_3:-72025108 None:intergenic
CCGTGGTGGTCATGTTAATC+TGG 0.405342 3_3:+72023469 Msa0469970:five_prime_UTR
CAGAATAAAATGAATTGGTT+GGG 0.406618 3_3:-72023015 None:intergenic
CCCGCCTTCTTTGTGTGTAT+CGG 0.407328 3_3:-72024463 None:intergenic
GTTATTCTCCTTCTAAGATC+TGG 0.410814 3_3:+72024606 Msa0469970:five_prime_UTR
CCAGTCTCAGGTACAGGAAT+AGG 0.419654 3_3:-72024528 None:intergenic
CAAACCTCTTGAAACAAAAT+GGG 0.422046 3_3:+72024500 Msa0469970:five_prime_UTR
TGCTTCATATCTTGTCCCTA+GGG 0.430039 3_3:-72025423 None:intergenic
GTCTAGTTCCAGATCTTAGA+AGG 0.431238 3_3:-72024614 None:intergenic
TGTTCCAGAATAAAATGAAT+TGG 0.441229 3_3:-72023020 None:intergenic
AGATTCTTCTGAAGGTTTGT+GGG 0.444169 3_3:+72025031 Msa0469970:CDS
TTCCAAAAGGCCCTTCTTGT+GGG 0.447471 3_3:-72024638 None:intergenic
TTAGCAGTGACAACAAGAAA+TGG 0.448377 3_3:-72023113 None:intergenic
AATCACGGCGGAGGTGGAGG+AGG 0.449102 3_3:+72023167 Msa0469970:five_prime_UTR
CACGGCGGAGGTGGAGGAGG+AGG 0.453111 3_3:+72023170 Msa0469970:five_prime_UTR
AACAATAATCACGGCGGAGG+TGG 0.457273 3_3:+72023161 Msa0469970:five_prime_UTR
GGCGGAGGTGGAGGAGGAGG+AGG 0.457665 3_3:+72023173 Msa0469970:five_prime_UTR
TTGCTTCATATCTTGTCCCT+AGG 0.458293 3_3:-72025424 None:intergenic
TGCAGCAGGGCTTGTGAAGA+AGG 0.465727 3_3:+72024872 Msa0469970:CDS
GTGGCTACCGACAAGCTTGA+TGG 0.470507 3_3:+72024561 Msa0469970:five_prime_UTR
CCAGAATAAAATGAATTGGT+TGG 0.476573 3_3:-72023016 None:intergenic
CCTATTCCTGTACCTGAGAC+TGG 0.480085 3_3:+72024528 Msa0469970:five_prime_UTR
AATAATCACGGCGGAGGTGG+AGG 0.494325 3_3:+72023164 Msa0469970:five_prime_UTR
TGTTGTACAGTTAATGATCT+CGG 0.498345 3_3:-72023071 None:intergenic
AACTGTTTAGATGATGCAGC+AGG 0.499367 3_3:+72024858 Msa0469970:CDS
TGGTTATGCTGGATGGCAAA+TGG 0.500950 3_3:+72024929 Msa0469970:CDS
ACAAGTACACAGCCAGTCTC+AGG 0.508596 3_3:-72024540 None:intergenic
ATTCCAAAAGGCCCTTCTTG+TGG 0.511329 3_3:-72024639 None:intergenic
TGTTTAATCTTCTTGTGAAG+AGG 0.512942 3_3:-72024675 None:intergenic
GGGACTACCTCTTCAAATCC+TGG 0.516956 3_3:-72024813 None:intergenic
TAGCAGTGACAACAAGAAAT+GGG 0.520121 3_3:-72023112 None:intergenic
GAGAATAACAGTTCTTTCAA+AGG 0.520498 3_3:-72024592 None:intergenic
GTGGTCATGTTAATCTGGAT+TGG 0.533501 3_3:+72023474 Msa0469970:five_prime_UTR
GCTTTGACAGATTCTTCTGA+AGG 0.533529 3_3:+72025023 Msa0469970:CDS
CGAGCTCCATAATATAGACC+AGG 0.539007 3_3:-72024834 None:intergenic
TCTTTGTTGGTTATGCTGGA+TGG 0.540720 3_3:+72024922 Msa0469970:CDS
TAAACTATATAGAGATGAGC+TGG 0.545843 3_3:+72023511 Msa0469970:five_prime_UTR
CTTCTTGTTCTTCTTGCCGC+CGG 0.547442 3_3:-72023138 None:intergenic
CCGATACACACAAAGAAGGC+GGG 0.549826 3_3:+72024463 Msa0469970:five_prime_UTR
GCGAATACCATCAAGCTTGT+CGG 0.551494 3_3:-72024568 None:intergenic
TCTGAATTATTAGTACCTAT+GGG 0.556246 3_3:-72025117 None:intergenic
GCAGCAGGGCTTGTGAAGAA+GGG 0.558137 3_3:+72024873 Msa0469970:CDS
ACACAGCCAGTCTCAGGTAC+AGG 0.559250 3_3:-72024534 None:intergenic
ATGAAATTGAGTCAGAGTAT+TGG 0.561047 3_3:+72024964 Msa0469970:CDS
ATGGGTACGCAGGATTGAGC+CGG 0.561903 3_3:+72025071 Msa0469970:exon
GCAATACCAGCAAGACCCAT+AGG 0.564699 3_3:+72025102 Msa0469970:three_prime_UTR
GGAACTAGACACCCACAAGA+AGG 0.566894 3_3:+72024627 Msa0469970:five_prime_UTR
TGAGACTGGCTGTGTACTTG+TGG 0.571797 3_3:+72024542 Msa0469970:five_prime_UTR
GGATTTGAAGAGGTAGTCCC+TGG 0.577229 3_3:+72024816 Msa0469970:CDS
AATTGATGCATGTAAAATGT+TGG 0.577452 3_3:+72025150 Msa0469970:three_prime_UTR
GGGTCTTGCTGGTATTGCTG+TGG 0.585429 3_3:-72025097 None:intergenic
TTCTTCTGAAGGTTTGTGGG+AGG 0.586761 3_3:+72025034 Msa0469970:CDS
CGATTGATGACAATTCCAAA+AGG 0.587218 3_3:-72024651 None:intergenic
CAGCAGGGCTTGTGAAGAAG+GGG 0.599227 3_3:+72024874 Msa0469970:CDS
AAGAACAATAATCACGGCGG+AGG 0.604640 3_3:+72023158 Msa0469970:five_prime_UTR
ATGCAGAGAACAATCAGAGA+AGG 0.607603 3_3:-72024730 None:intergenic
TGACAACAAGAAATGGGATG+CGG 0.608709 3_3:-72023106 None:intergenic
GAAGCTTCCAGGATTTGAAG+AGG 0.610660 3_3:+72024806 Msa0469970:CDS
GAACTAGACACCCACAAGAA+GGG 0.612099 3_3:+72024628 Msa0469970:five_prime_UTR
CAGAGAACAATCAGAGAAGG+TGG 0.616018 3_3:-72024727 None:intergenic
GATGCCGATACACACAAAGA+AGG 0.619105 3_3:+72024459 Msa0469970:five_prime_UTR
TTTGCAACTTATGGGTACGC+AGG 0.620393 3_3:+72025061 Msa0469970:CDS
CTTGTTGTCACTGCTAACGC+CGG 0.621404 3_3:+72023119 Msa0469970:five_prime_UTR
AACAAGAAGAACAATAATCA+CGG 0.628711 3_3:+72023152 Msa0469970:five_prime_UTR
CGATACACACAAAGAAGGCG+GGG 0.630007 3_3:+72024464 Msa0469970:five_prime_UTR
GCCGATACACACAAAGAAGG+CGG 0.635205 3_3:+72024462 Msa0469970:five_prime_UTR
ACAAAGAAACTGAAATCATG+AGG 0.637763 3_3:-72024906 None:intergenic
CAACAAGAAATGGGATGCGG+CGG 0.642061 3_3:-72023103 None:intergenic
TGAGTCAGAGTATTGGTATG+TGG 0.643034 3_3:+72024971 Msa0469970:CDS
GGTGACCAGTCTATTCCAGA+AGG 0.645000 3_3:+72023398 Msa0469970:five_prime_UTR
ACTGTTTAGATGATGCAGCA+GGG 0.653857 3_3:+72024859 Msa0469970:CDS
GTTGTCACTGCTAACGCCGG+CGG 0.656759 3_3:+72023122 Msa0469970:five_prime_UTR
ATAGAAAACTAAAAGCAAGA+CGG 0.665000 3_3:-72025236 None:intergenic
GAGCTCCATAATATAGACCA+GGG 0.684906 3_3:-72024833 None:intergenic
TGTACAGTTAATGATCTCGG+CGG 0.724918 3_3:-72023068 None:intergenic
CCAGATTAACATGACCACCA+CGG 0.729731 3_3:-72023469 None:intergenic
TTCTCAACCTATGAACAACG+TGG 0.739052 3_3:+72025394 Msa0469970:three_prime_UTR
TCTCAGAATGAGAACCGTGG+TGG 0.747290 3_3:+72023455 Msa0469970:five_prime_UTR
AACTCTCAGAATGAGAACCG+TGG 0.749394 3_3:+72023452 Msa0469970:five_prime_UTR
AAGAAGAACAATAATCACGG+CGG 0.784381 3_3:+72023155 Msa0469970:five_prime_UTR
AAAGTGAATATGGATCTGTG+TGG 0.831813 3_3:+72022965 Msa0469970:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAATAGTTGAT+TGG - chr3_3:72022843-72022862 None:intergenic 10.0%
!! AAAATCAATAAAAGTGAATA+TGG + chr3_3:72022955-72022974 Msa0469970:five_prime_UTR 15.0%
!!! TTTTAAAAGCATAGTAAAAT+TGG - chr3_3:72023288-72023307 None:intergenic 15.0%
!! TTATACATGATACATAATTA+TGG + chr3_3:72023787-72023806 Msa0469970:intron 15.0%
!!! GATTTGTATCATTTTATTTA+TGG + chr3_3:72024085-72024104 Msa0469970:intron 15.0%
!! TTAAGGATTTATACAATAAA+TGG + chr3_3:72024179-72024198 Msa0469970:intron 15.0%
!!! TGAAAACATATTTGAAATTA+TGG + chr3_3:72024215-72024234 Msa0469970:intron 15.0%
!!! ATATTTGAAATTATGGAAAA+CGG + chr3_3:72024222-72024241 Msa0469970:intron 15.0%
!! TATCGTCTAATGATTAATAT+TGG + chr3_3:72024034-72024053 Msa0469970:intron 20.0%
!!! GTTACTAAATCATGATTTTT+AGG - chr3_3:72024708-72024727 None:intergenic 20.0%
!!! TTTTAGTTTTCTATCAATAG+AGG + chr3_3:72025245-72025264 Msa0469970:three_prime_UTR 20.0%
! TGATAATAATTCAACACGAT+TGG - chr3_3:72022921-72022940 None:intergenic 25.0%
! CAGAATAAAATGAATTGGTT+GGG - chr3_3:72023018-72023037 None:intergenic 25.0%
! TGTTCCAGAATAAAATGAAT+TGG - chr3_3:72023023-72023042 None:intergenic 25.0%
! AACAAGAAGAACAATAATCA+CGG + chr3_3:72023152-72023171 Msa0469970:five_prime_UTR 25.0%
! CTTAACTATTGGACTTATAT+GGG - chr3_3:72023713-72023732 None:intergenic 25.0%
! TCTTAACTATTGGACTTATA+TGG - chr3_3:72023714-72023733 None:intergenic 25.0%
! ATATAAGTCCAATAGTTAAG+AGG + chr3_3:72023713-72023732 Msa0469970:intron 25.0%
! GAGAGACTAAAAAAAGTTAT+AGG + chr3_3:72023740-72023759 Msa0469970:intron 25.0%
! AAAAAGTTATAGGAAGTCAA+TGG + chr3_3:72023750-72023769 Msa0469970:intron 25.0%
! AATCATACTTGATAGATAGT+TGG + chr3_3:72023918-72023937 Msa0469970:intron 25.0%
! TTAATGACAAGTTCATCAAA+AGG - chr3_3:72023954-72023973 None:intergenic 25.0%
! ACCAAGTTATAGAAAAATGA+AGG + chr3_3:72024059-72024078 Msa0469970:intron 25.0%
! CCAAGTTATAGAAAAATGAA+GGG + chr3_3:72024060-72024079 Msa0469970:intron 25.0%
! CTTAATAACAAGTACAAACA+AGG - chr3_3:72024164-72024183 None:intergenic 25.0%
!!! CTTGTTTGTACTTGTTATTA+AGG + chr3_3:72024162-72024181 Msa0469970:intron 25.0%
! ATAGATACATAGAATGCAAA+AGG - chr3_3:72024295-72024314 None:intergenic 25.0%
! TCTGAATTATTAGTACCTAT+GGG - chr3_3:72025120-72025139 None:intergenic 25.0%
! ATCTGAATTATTAGTACCTA+TGG - chr3_3:72025121-72025140 None:intergenic 25.0%
! AATTGATGCATGTAAAATGT+TGG + chr3_3:72025150-72025169 Msa0469970:three_prime_UTR 25.0%
! ATAGAAAACTAAAAGCAAGA+CGG - chr3_3:72025239-72025258 None:intergenic 25.0%
TCTTTGTCTTCTTTCTTTCT+TGG + chr3_3:72022775-72022794 Msa0469970:five_prime_UTR 30.0%
CCAGAATAAAATGAATTGGT+TGG - chr3_3:72023019-72023038 None:intergenic 30.0%
! CCAACCAATTCATTTTATTC+TGG + chr3_3:72023016-72023035 Msa0469970:five_prime_UTR 30.0%
TGTTGTACAGTTAATGATCT+CGG - chr3_3:72023074-72023093 None:intergenic 30.0%
AGATTAATCAACAACACAAC+AGG - chr3_3:72023363-72023382 None:intergenic 30.0%
GTTGATTAATCTAACCTTAC+AGG + chr3_3:72023371-72023390 Msa0469970:intron 30.0%
TAATCTAACCTTACAGGTAA+TGG + chr3_3:72023377-72023396 Msa0469970:intron 30.0%
!!! CCATTATTATTTTTGCCTTC+TGG - chr3_3:72023416-72023435 None:intergenic 30.0%
CCAGAAGGCAAAAATAATAA+TGG + chr3_3:72023413-72023432 Msa0469970:five_prime_UTR 30.0%
TAAACTATATAGAGATGAGC+TGG + chr3_3:72023511-72023530 Msa0469970:five_prime_UTR 30.0%
GAATGAAGTTATTCCAATTC+AGG - chr3_3:72023624-72023643 None:intergenic 30.0%
TCATTCCATTGTAGAAAAGA+TGG + chr3_3:72023638-72023657 Msa0469970:intron 30.0%
!! CCCTTCATTTTTCTATAACT+TGG - chr3_3:72024063-72024082 None:intergenic 30.0%
!! CATTTTATTTATGGCTCGTT+TGG + chr3_3:72024094-72024113 Msa0469970:intron 30.0%
ATTGATGTAGAAGCTACTAT+TGG + chr3_3:72024334-72024353 Msa0469970:intron 30.0%
CAAACCTCTTGAAACAAAAT+GGG + chr3_3:72024500-72024519 Msa0469970:five_prime_UTR 30.0%
GAGAATAACAGTTCTTTCAA+AGG - chr3_3:72024595-72024614 None:intergenic 30.0%
TGTTTAATCTTCTTGTGAAG+AGG - chr3_3:72024678-72024697 None:intergenic 30.0%
!! AGCATGTTTTTGCTAAAATC+AGG + chr3_3:72024774-72024793 Msa0469970:CDS 30.0%
ACAAAGAAACTGAAATCATG+AGG - chr3_3:72024909-72024928 None:intergenic 30.0%
CATGATTTCAGTTTCTTTGT+TGG + chr3_3:72024909-72024928 Msa0469970:CDS 30.0%
ATGAAATTGAGTCAGAGTAT+TGG + chr3_3:72024964-72024983 Msa0469970:CDS 30.0%
TACTCGAATGTCAGATAATT+AGG + chr3_3:72025201-72025220 Msa0469970:three_prime_UTR 30.0%
!! GTTGAGAAAACATTGATTCA+TGG - chr3_3:72025382-72025401 None:intergenic 30.0%
! ATGAAAGTGACGTTTTCGAA+AGG - chr3_3:72022755-72022774 None:intergenic 35.0%
AAAGTGAATATGGATCTGTG+TGG + chr3_3:72022965-72022984 Msa0469970:five_prime_UTR 35.0%
TAGCAGTGACAACAAGAAAT+GGG - chr3_3:72023115-72023134 None:intergenic 35.0%
TTAGCAGTGACAACAAGAAA+TGG - chr3_3:72023116-72023135 None:intergenic 35.0%
AAGAAGAACAATAATCACGG+CGG + chr3_3:72023155-72023174 Msa0469970:five_prime_UTR 35.0%
!! AAAATTGGTTTGCAGGTTGA+TGG - chr3_3:72023273-72023292 None:intergenic 35.0%
!! GCATAGTAAAATTGGTTTGC+AGG - chr3_3:72023280-72023299 None:intergenic 35.0%
TTAATCAACAACACAACAGG+CGG - chr3_3:72023360-72023379 None:intergenic 35.0%
! CTCTACCATCTTTTCTACAA+TGG - chr3_3:72023646-72023665 None:intergenic 35.0%
! AGTCTTGTCATAACCCATAT+AGG + chr3_3:72023664-72023683 Msa0469970:intron 35.0%
TCTCTCTACCTCTTAACTAT+TGG - chr3_3:72023724-72023743 None:intergenic 35.0%
CAATTAACCTTTATCCCACT+AGG - chr3_3:72023841-72023860 None:intergenic 35.0%
GGGATAAAGGTTAATTGTCA+AGG + chr3_3:72023844-72023863 Msa0469970:intron 35.0%
! ATTAATCTAAGATGCCTCCT+TGG + chr3_3:72023969-72023988 Msa0469970:intron 35.0%
TAGACGATAAACACCTCAAT+GGG - chr3_3:72024023-72024042 None:intergenic 35.0%
TTAGACGATAAACACCTCAA+TGG - chr3_3:72024024-72024043 None:intergenic 35.0%
TAGAATGCAAAAGGCGAAAA+AGG - chr3_3:72024286-72024305 None:intergenic 35.0%
CCTGTATTGCTTCTTAGATA+TGG - chr3_3:72024370-72024389 None:intergenic 35.0%
CCATATCTAAGAAGCAATAC+AGG + chr3_3:72024367-72024386 Msa0469970:intron 35.0%
!! CCATTTTGTTTCAAGAGGTT+TGG - chr3_3:72024502-72024521 None:intergenic 35.0%
CCAAACCTCTTGAAACAAAA+TGG + chr3_3:72024499-72024518 Msa0469970:five_prime_UTR 35.0%
!! GTTATTCTCCTTCTAAGATC+TGG + chr3_3:72024606-72024625 Msa0469970:five_prime_UTR 35.0%
! CGATTGATGACAATTCCAAA+AGG - chr3_3:72024654-72024673 None:intergenic 35.0%
! TCTGATTGTTCTCTGCATTT+TGG + chr3_3:72024735-72024754 Msa0469970:CDS 35.0%
! AGTTTCTTTGTTGGTTATGC+TGG + chr3_3:72024918-72024937 Msa0469970:CDS 35.0%
!! TAGCTCAAGTTTGCTGTATA+AGG + chr3_3:72025001-72025020 Msa0469970:CDS 35.0%
! AGATTCTTCTGAAGGTTTGT+GGG + chr3_3:72025031-72025050 Msa0469970:CDS 35.0%
! GAGGAGATTTTGCAACTTAT+GGG + chr3_3:72025053-72025072 Msa0469970:CDS 35.0%
!! CTTTTGTTGTGTTTGTGCAT+TGG - chr3_3:72025349-72025368 None:intergenic 35.0%
! GATTTTTCCACGTTGTTCAT+AGG - chr3_3:72025404-72025423 None:intergenic 35.0%
TGGATTGCAGAGATAGATGA+AGG - chr3_3:72022823-72022842 None:intergenic 40.0%
TGTACAGTTAATGATCTCGG+CGG - chr3_3:72023071-72023090 None:intergenic 40.0%
TGACAACAAGAAATGGGATG+CGG - chr3_3:72023109-72023128 None:intergenic 40.0%
!!! TTTTGCCTTCTGGAATAGAC+TGG - chr3_3:72023406-72023425 None:intergenic 40.0%
GTGGTCATGTTAATCTGGAT+TGG + chr3_3:72023474-72023493 Msa0469970:five_prime_UTR 40.0%
TGTACCTCTGTCTGTTTAAG+TGG + chr3_3:72023585-72023604 Msa0469970:intron 40.0%
TTCGAGTCAACTTCCTGAAT+TGG + chr3_3:72023608-72023627 Msa0469970:intron 40.0%
CTTGTCATAACCCATATAGG+TGG + chr3_3:72023667-72023686 Msa0469970:intron 40.0%
CATAACCCATATAGGTGGTT+TGG + chr3_3:72023672-72023691 Msa0469970:intron 40.0%
CATGTCCAAACCACCTATAT+GGG - chr3_3:72023680-72023699 None:intergenic 40.0%
ACATGTCCAAACCACCTATA+TGG - chr3_3:72023681-72023700 None:intergenic 40.0%
! ATAGGTGGTTTGGACATGTT+TGG + chr3_3:72023682-72023701 Msa0469970:intron 40.0%
TTAACCTTTATCCCACTAGG+TGG - chr3_3:72023838-72023857 None:intergenic 40.0%
!! TGAGCCCATTTTGTTTCAAG+AGG - chr3_3:72024507-72024526 None:intergenic 40.0%
! GTCTAGTTCCAGATCTTAGA+AGG - chr3_3:72024617-72024636 None:intergenic 40.0%
ATGCAGAGAACAATCAGAGA+AGG - chr3_3:72024733-72024752 None:intergenic 40.0%
! GATTGTTCTCTGCATTTTGG+TGG + chr3_3:72024738-72024757 Msa0469970:CDS 40.0%
AAAAACATGCTTGCCTCAAG+AGG - chr3_3:72024765-72024784 None:intergenic 40.0%
GTAGTCCCTGGTCTATATTA+TGG + chr3_3:72024828-72024847 Msa0469970:CDS 40.0%
GAGCTCCATAATATAGACCA+GGG - chr3_3:72024836-72024855 None:intergenic 40.0%
AACTGTTTAGATGATGCAGC+AGG + chr3_3:72024858-72024877 Msa0469970:CDS 40.0%
ACTGTTTAGATGATGCAGCA+GGG + chr3_3:72024859-72024878 Msa0469970:CDS 40.0%
! TCTTTGTTGGTTATGCTGGA+TGG + chr3_3:72024922-72024941 Msa0469970:CDS 40.0%
!! TGAGTCAGAGTATTGGTATG+TGG + chr3_3:72024971-72024990 Msa0469970:CDS 40.0%
GCTTTGACAGATTCTTCTGA+AGG + chr3_3:72025023-72025042 Msa0469970:CDS 40.0%
! CAGATTCTTCTGAAGGTTTG+TGG + chr3_3:72025030-72025049 Msa0469970:CDS 40.0%
! GGAGGAGATTTTGCAACTTA+TGG + chr3_3:72025052-72025071 Msa0469970:CDS 40.0%
TTCTCAACCTATGAACAACG+TGG + chr3_3:72025394-72025413 Msa0469970:three_prime_UTR 40.0%
AACAACGTGGAAAAATCCCT+AGG + chr3_3:72025407-72025426 Msa0469970:three_prime_UTR 40.0%
ACAACGTGGAAAAATCCCTA+GGG + chr3_3:72025408-72025427 Msa0469970:three_prime_UTR 40.0%
TGCTTCATATCTTGTCCCTA+GGG - chr3_3:72025426-72025445 None:intergenic 40.0%
TTGCTTCATATCTTGTCCCT+AGG - chr3_3:72025427-72025446 None:intergenic 40.0%
AAGAACAATAATCACGGCGG+AGG + chr3_3:72023158-72023177 Msa0469970:five_prime_UTR 45.0%
ACTGGTCACCATTACCTGTA+AGG - chr3_3:72023388-72023407 None:intergenic 45.0%
AACTCTCAGAATGAGAACCG+TGG + chr3_3:72023452-72023471 Msa0469970:five_prime_UTR 45.0%
CCAGATTAACATGACCACCA+CGG - chr3_3:72023472-72023491 None:intergenic 45.0%
CGAACCACTTAAACAGACAG+AGG - chr3_3:72023592-72023611 None:intergenic 45.0%
ATTCAGAAGACTCCACCTAG+TGG + chr3_3:72023823-72023842 Msa0469970:intron 45.0%
TTCAGAAGACTCCACCTAGT+GGG + chr3_3:72023824-72023843 Msa0469970:intron 45.0%
TGACTGTATCTGTCCCATTG+AGG + chr3_3:72024007-72024026 Msa0469970:intron 45.0%
GGAGCAACTTACTCGATGTT+AGG + chr3_3:72024388-72024407 Msa0469970:intron 45.0%
GATGCCGATACACACAAAGA+AGG + chr3_3:72024459-72024478 Msa0469970:five_prime_UTR 45.0%
GCGAATACCATCAAGCTTGT+CGG - chr3_3:72024571-72024590 None:intergenic 45.0%
GAACTAGACACCCACAAGAA+GGG + chr3_3:72024628-72024647 Msa0469970:five_prime_UTR 45.0%
TTCCAAAAGGCCCTTCTTGT+GGG - chr3_3:72024641-72024660 None:intergenic 45.0%
ATTCCAAAAGGCCCTTCTTG+TGG - chr3_3:72024642-72024661 None:intergenic 45.0%
CAGAGAACAATCAGAGAAGG+TGG - chr3_3:72024730-72024749 None:intergenic 45.0%
GAAGCTTCCAGGATTTGAAG+AGG + chr3_3:72024806-72024825 Msa0469970:CDS 45.0%
CGAGCTCCATAATATAGACC+AGG - chr3_3:72024837-72024856 None:intergenic 45.0%
TGGTTATGCTGGATGGCAAA+TGG + chr3_3:72024929-72024948 Msa0469970:CDS 45.0%
! TTCTTCTGAAGGTTTGTGGG+AGG + chr3_3:72025034-72025053 Msa0469970:CDS 45.0%
TTTGCAACTTATGGGTACGC+AGG + chr3_3:72025061-72025080 Msa0469970:CDS 45.0%
TTAGTACCTATGGGTCTTGC+TGG - chr3_3:72025111-72025130 None:intergenic 45.0%
CAACAAGAAATGGGATGCGG+CGG - chr3_3:72023106-72023125 None:intergenic 50.0%
! CTTGTTGTCACTGCTAACGC+CGG + chr3_3:72023119-72023138 Msa0469970:five_prime_UTR 50.0%
CTTCTTGTTCTTCTTGCCGC+CGG - chr3_3:72023141-72023160 None:intergenic 50.0%
AACAATAATCACGGCGGAGG+TGG + chr3_3:72023161-72023180 Msa0469970:five_prime_UTR 50.0%
GGTGACCAGTCTATTCCAGA+AGG + chr3_3:72023398-72023417 Msa0469970:five_prime_UTR 50.0%
TCTCAGAATGAGAACCGTGG+TGG + chr3_3:72023455-72023474 Msa0469970:five_prime_UTR 50.0%
CCGTGGTGGTCATGTTAATC+TGG + chr3_3:72023469-72023488 Msa0469970:five_prime_UTR 50.0%
GACTCCACCTAGTGGGATAA+AGG + chr3_3:72023831-72023850 Msa0469970:intron 50.0%
CTAAGATGCCTCCTTGGTTG+AGG + chr3_3:72023975-72023994 Msa0469970:intron 50.0%
CATGTTGTCAGCCTCAACCA+AGG - chr3_3:72023989-72024008 None:intergenic 50.0%
GCCGATACACACAAAGAAGG+CGG + chr3_3:72024462-72024481 Msa0469970:five_prime_UTR 50.0%
CCCGCCTTCTTTGTGTGTAT+CGG - chr3_3:72024466-72024485 None:intergenic 50.0%
CCGATACACACAAAGAAGGC+GGG + chr3_3:72024463-72024482 Msa0469970:five_prime_UTR 50.0%
CGATACACACAAAGAAGGCG+GGG + chr3_3:72024464-72024483 Msa0469970:five_prime_UTR 50.0%
CCAGTCTCAGGTACAGGAAT+AGG - chr3_3:72024531-72024550 None:intergenic 50.0%
CCTATTCCTGTACCTGAGAC+TGG + chr3_3:72024528-72024547 Msa0469970:five_prime_UTR 50.0%
ACAAGTACACAGCCAGTCTC+AGG - chr3_3:72024543-72024562 None:intergenic 50.0%
! TGAGACTGGCTGTGTACTTG+TGG + chr3_3:72024542-72024561 Msa0469970:five_prime_UTR 50.0%
GGAACTAGACACCCACAAGA+AGG + chr3_3:72024627-72024646 Msa0469970:five_prime_UTR 50.0%
!! GCATTTTGGTGGACCTCTTG+AGG + chr3_3:72024749-72024768 Msa0469970:CDS 50.0%
GGAGAGAAGTTGAAGCTTCC+AGG + chr3_3:72024795-72024814 Msa0469970:CDS 50.0%
GGGACTACCTCTTCAAATCC+TGG - chr3_3:72024816-72024835 None:intergenic 50.0%
GGATTTGAAGAGGTAGTCCC+TGG + chr3_3:72024816-72024835 Msa0469970:CDS 50.0%
GCAATACCAGCAAGACCCAT+AGG + chr3_3:72025102-72025121 Msa0469970:three_prime_UTR 50.0%
AATAATCACGGCGGAGGTGG+AGG + chr3_3:72023164-72023183 Msa0469970:five_prime_UTR 55.0%
GTTGTCAGCCTCAACCAAGG+AGG - chr3_3:72023986-72024005 None:intergenic 55.0%
ACACAGCCAGTCTCAGGTAC+AGG - chr3_3:72024537-72024556 None:intergenic 55.0%
GTGGCTACCGACAAGCTTGA+TGG + chr3_3:72024561-72024580 Msa0469970:five_prime_UTR 55.0%
! CACCCACAAGAAGGGCCTTT+TGG + chr3_3:72024636-72024655 Msa0469970:five_prime_UTR 55.0%
TGCAGCAGGGCTTGTGAAGA+AGG + chr3_3:72024872-72024891 Msa0469970:CDS 55.0%
GCAGCAGGGCTTGTGAAGAA+GGG + chr3_3:72024873-72024892 Msa0469970:CDS 55.0%
CAGCAGGGCTTGTGAAGAAG+GGG + chr3_3:72024874-72024893 Msa0469970:CDS 55.0%
ATGGGTACGCAGGATTGAGC+CGG + chr3_3:72025071-72025090 Msa0469970:exon 55.0%
GCTGGTATTGCTGTGGCTTC+CGG - chr3_3:72025093-72025112 None:intergenic 55.0%
GGGTCTTGCTGGTATTGCTG+TGG - chr3_3:72025100-72025119 None:intergenic 55.0%
GTTGTCACTGCTAACGCCGG+CGG + chr3_3:72023122-72023141 Msa0469970:five_prime_UTR 60.0%
AATCACGGCGGAGGTGGAGG+AGG + chr3_3:72023167-72023186 Msa0469970:five_prime_UTR 65.0%
CACGGCGGAGGTGGAGGAGG+AGG + chr3_3:72023170-72023189 Msa0469970:five_prime_UTR 75.0%
GGCGGAGGTGGAGGAGGAGG+AGG + chr3_3:72023173-72023192 Msa0469970:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72022726 72025451 72022726 ID=Msa0469970;Name=Msa0469970
chr3_3 mRNA 72022726 72025451 72022726 ID=Msa0469970-mRNA-1;Parent=Msa0469970;Name=Msa0469970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=710|1|1|1|0.66|0.5|4|363|129
chr3_3 exon 72022726 72022796 72022726 ID=Msa0469970-mRNA-1:exon:17788;Parent=Msa0469970-mRNA-1
chr3_3 exon 72022948 72023194 72022948 ID=Msa0469970-mRNA-1:exon:17789;Parent=Msa0469970-mRNA-1
chr3_3 exon 72023393 72023532 72023393 ID=Msa0469970-mRNA-1:exon:17790;Parent=Msa0469970-mRNA-1
chr3_3 exon 72024447 72025451 72024447 ID=Msa0469970-mRNA-1:exon:17791;Parent=Msa0469970-mRNA-1
chr3_3 five_prime_UTR 72022726 72022796 72022726 ID=Msa0469970-mRNA-1:five_prime_utr;Parent=Msa0469970-mRNA-1
chr3_3 five_prime_UTR 72022948 72023194 72022948 ID=Msa0469970-mRNA-1:five_prime_utr;Parent=Msa0469970-mRNA-1
chr3_3 five_prime_UTR 72023393 72023532 72023393 ID=Msa0469970-mRNA-1:five_prime_utr;Parent=Msa0469970-mRNA-1
chr3_3 five_prime_UTR 72024447 72024698 72024447 ID=Msa0469970-mRNA-1:five_prime_utr;Parent=Msa0469970-mRNA-1
chr3_3 CDS 72024699 72025088 72024699 ID=Msa0469970-mRNA-1:cds;Parent=Msa0469970-mRNA-1
chr3_3 three_prime_UTR 72025089 72025451 72025089 ID=Msa0469970-mRNA-1:three_prime_utr;Parent=Msa0469970-mRNA-1
Gene Sequence

>Msa0469970

ATGAATCCTAAAAATCATGATTTAGTAACCACCTTCTCTGATTGTTCTCTGCATTTTGGTGGACCTCTTGAGGCAAGCATGTTTTTGCTAAAATCAGGAGAGAAGTTGAAGCTTCCAGGATTTGAAGAGGTAGTCCCTGGTCTATATTATGGAGCTCGAAACTGTTTAGATGATGCAGCAGGGCTTGTGAAGAAGGGGATTATCAAGCCTCATGATTTCAGTTTCTTTGTTGGTTATGCTGGATGGCAAATGGATCAGTTGCGAGATGAAATTGAGTCAGAGTATTGGTATGTGGCTGCATGTAGCTCAAGTTTGCTGTATAAGGCTTTGACAGATTCTTCTGAAGGTTTGTGGGAGGAGATTTTGCAACTTATGGGTACGCAGGATTGA

Protein sequence

>Msa0469970

MNPKNHDLVTTFSDCSLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNCLDDAAGLVKKGIIKPHDFSFFVGYAGWQMDQLRDEIESEYWYVAACSSSLLYKALTDSSEGLWEEILQLMGTQD*