Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175630 | XP_013469215.1 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.85e-65 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175630 | sp|O82255|GRC13_ARATH | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.01e-51 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175630 | A0A072VPA8 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 1.84e-65 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082540 | Msa0175630 | 0.869028 | 4.206227e-66 | -8.615850e-47 |
| Msa0082550 | Msa0175630 | 0.967924 | 5.952312e-128 | -8.615850e-47 |
| Msa0124110 | Msa0175630 | 0.802052 | 6.734924e-49 | -8.615850e-47 |
| Msa0138230 | Msa0175630 | 0.893978 | 3.797642e-75 | -8.615850e-47 |
| Msa0138240 | Msa0175630 | 0.967185 | 6.254473e-127 | -8.615850e-47 |
| Msa0140910 | Msa0175630 | 0.803210 | 3.886845e-49 | -8.615850e-47 |
| Msa0175630 | Msa0175640 | 0.870112 | 1.865855e-66 | -8.615850e-47 |
| Msa0175630 | Msa0211010 | 0.803182 | 3.939395e-49 | -8.615850e-47 |
| Msa0175630 | Msa0213090 | 0.803146 | 4.006022e-49 | -8.615850e-47 |
| Msa0175630 | Msa0233190 | 0.804045 | 2.607490e-49 | -8.615850e-47 |
| Msa0175630 | Msa0253370 | 0.824354 | 8.446217e-54 | -8.615850e-47 |
| Msa0175630 | Msa0264940 | -0.813362 | 2.659810e-51 | -8.615850e-47 |
| Msa0175630 | Msa0302990 | -0.814781 | 1.293745e-51 | -8.615850e-47 |
| Msa0175630 | Msa0304990 | 0.800474 | 1.416820e-48 | -8.615850e-47 |
| Msa0175630 | Msa0330400 | 0.813178 | 2.919747e-51 | -8.615850e-47 |
| Msa0175630 | Msa0365360 | 0.800187 | 1.621163e-48 | -8.615850e-47 |
| Msa0175630 | Msa0371540 | 0.805838 | 1.100470e-49 | -8.615850e-47 |
| Msa0175630 | Msa0389060 | 0.804015 | 2.645339e-49 | -8.615850e-47 |
| Msa0175630 | Msa0416800 | 0.828397 | 9.196608e-55 | -8.615850e-47 |
| Msa0175630 | Msa0419970 | 0.806981 | 6.317765e-50 | -8.615850e-47 |
| Msa0175630 | Msa0463460 | 0.804690 | 1.914148e-49 | -8.615850e-47 |
| Msa0175630 | Msa0466060 | 0.800506 | 1.395906e-48 | -8.615850e-47 |
| Msa0175630 | Msa0517340 | 0.802437 | 5.613523e-49 | -8.615850e-47 |
| Msa0175630 | Msa0626230 | 0.830544 | 2.765903e-55 | -8.615850e-47 |
| Msa0175630 | Msa0672810 | 0.806513 | 7.931601e-50 | -8.615850e-47 |
| Msa0175630 | Msa0715310 | 0.810164 | 1.320979e-50 | -8.615850e-47 |
| Msa0175630 | Msa0723140 | 0.811808 | 5.815813e-51 | -8.615850e-47 |
| Msa0175630 | Msa0757180 | 0.801198 | 1.008419e-48 | -8.615850e-47 |
| Msa0175630 | Msa0790230 | 0.994564 | 2.679587e-208 | -8.615850e-47 |
| Msa0175630 | Msa0790240 | 0.883890 | 3.059582e-71 | -8.615850e-47 |
| Msa0175630 | Msa0792510 | 0.844503 | 7.261482e-59 | -8.615850e-47 |
| Msa0175630 | Msa0843280 | 0.801550 | 8.541682e-49 | -8.615850e-47 |
| Msa0175630 | Msa0870630 | 0.805870 | 1.083300e-49 | -8.615850e-47 |
| Msa0175630 | Msa0951720 | 0.813192 | 2.898720e-51 | -8.615850e-47 |
| Msa0175630 | Msa1036390 | 0.827764 | 1.306597e-54 | -8.615850e-47 |
| Msa0175630 | Msa1055430 | 0.804157 | 2.472081e-49 | -8.615850e-47 |
| Msa0175630 | Msa1076680 | 0.820171 | 7.898795e-53 | -8.615850e-47 |
| Msa0175630 | Msa1249940 | 0.805153 | 1.531274e-49 | -8.615850e-47 |
| Msa0175630 | Msa1317710 | 0.802306 | 5.973272e-49 | -8.615850e-47 |
| Msa0175630 | Msa1329990 | 0.806076 | 9.803219e-50 | -8.615850e-47 |
| Msa0175630 | Msa1343340 | 0.812507 | 4.095275e-51 | -8.615850e-47 |
| Msa0175630 | Msa1373950 | 0.842859 | 1.998916e-58 | -8.615850e-47 |
| Msa0175630 | Msa1400460 | 0.889938 | 1.546591e-73 | -8.615850e-47 |
| Msa0175630 | Msa1400470 | 0.968326 | 1.615468e-128 | -8.615850e-47 |
| Msa0175630 | Msa1460310 | -0.814883 | 1.227723e-51 | -8.615850e-47 |
| Msa0175630 | Msa1465900 | 0.804734 | 1.873936e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175630 | MtrunA17_Chr1g0195991 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.54e-69 | 201 |
| Msa0175630 | MtrunA17_Chr1g0195981 | 95.960 | 99 | 4 | 0 | 1 | 99 | 1 | 99 | 3.18e-68 | 199 |
| Msa0175630 | MtrunA17_Chr7g0268711 | 76.531 | 98 | 23 | 0 | 1 | 98 | 1 | 98 | 2.74e-57 | 171 |
| Msa0175630 | MtrunA17_Chr2g0286251 | 56.842 | 95 | 41 | 0 | 1 | 95 | 1 | 95 | 4.02e-39 | 125 |
| Msa0175630 | MtrunA17_Chr1g0195971 | 52.041 | 98 | 47 | 0 | 1 | 98 | 1 | 98 | 4.82e-36 | 118 |
| Msa0175630 | MtrunA17_Chr2g0286271 | 54.737 | 95 | 43 | 0 | 1 | 95 | 1 | 95 | 1.08e-35 | 117 |
| Msa0175630 | MtrunA17_Chr7g0222541 | 51.042 | 96 | 46 | 1 | 1 | 95 | 30 | 125 | 5.05e-34 | 114 |
| Msa0175630 | MtrunA17_Chr7g0222551 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.49e-33 | 112 |
| Msa0175630 | MtrunA17_Chr7g0224091 | 51.042 | 96 | 46 | 1 | 1 | 95 | 22 | 117 | 3.31e-33 | 111 |
| Msa0175630 | MtrunA17_Chr7g0222491 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.21e-32 | 110 |
| Msa0175630 | MtrunA17_Chr4g0066791 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
| Msa0175630 | MtrunA17_Chr4g0066801 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
| Msa0175630 | MtrunA17_Chr4g0066811 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
| Msa0175630 | MtrunA17_Chr7g0268731 | 49.474 | 95 | 47 | 1 | 1 | 94 | 1 | 95 | 1.31e-30 | 104 |
| Msa0175630 | MtrunA17_Chr7g0268721 | 48.421 | 95 | 48 | 1 | 1 | 94 | 1 | 95 | 8.76e-30 | 102 |
| Msa0175630 | MtrunA17_Chr7g0268751 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 7.44e-26 | 92.4 |
| Msa0175630 | MtrunA17_Chr1g0195951 | 38.298 | 94 | 58 | 0 | 1 | 94 | 1 | 94 | 4.42e-25 | 90.5 |
| Msa0175630 | MtrunA17_Chr1g0195931 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 1.45e-21 | 81.6 |
| Msa0175630 | MtrunA17_Chr2g0303741 | 39.796 | 98 | 55 | 1 | 2 | 95 | 40 | 137 | 3.25e-21 | 81.6 |
| Msa0175630 | MtrunA17_Chr7g0268761 | 40.426 | 94 | 56 | 0 | 1 | 94 | 1 | 94 | 2.60e-20 | 78.2 |
| Msa0175630 | MtrunA17_Chr2g0325001 | 38.542 | 96 | 52 | 2 | 4 | 95 | 41 | 133 | 1.18e-19 | 77.8 |
| Msa0175630 | MtrunA17_Chr2g0282951 | 36.170 | 94 | 60 | 0 | 2 | 95 | 27 | 120 | 6.54e-19 | 75.5 |
| Msa0175630 | MtrunA17_Chr3g0117411 | 35.789 | 95 | 61 | 0 | 1 | 95 | 18 | 112 | 1.03e-16 | 69.7 |
| Msa0175630 | MtrunA17_Chr4g0040601 | 38.710 | 93 | 52 | 3 | 6 | 95 | 58 | 148 | 4.19e-16 | 68.9 |
| Msa0175630 | MtrunA17_Chr3g0117391 | 34.043 | 94 | 62 | 0 | 1 | 94 | 21 | 114 | 4.94e-16 | 68.2 |
| Msa0175630 | MtrunA17_Chr7g0228311 | 37.234 | 94 | 59 | 0 | 1 | 94 | 3 | 96 | 7.85e-16 | 67.0 |
| Msa0175630 | MtrunA17_Chr1g0151231 | 36.170 | 94 | 58 | 1 | 3 | 94 | 48 | 141 | 5.78e-14 | 63.2 |
| Msa0175630 | MtrunA17_Chr1g0182971 | 32.979 | 94 | 62 | 1 | 2 | 94 | 84 | 177 | 6.48e-14 | 63.9 |
| Msa0175630 | MtrunA17_Chr3g0135811 | 35.484 | 93 | 54 | 3 | 3 | 94 | 23 | 110 | 3.11e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175630 | AT2G47880.1 | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.04e-52 | 159 |
| Msa0175630 | AT1G06830.1 | 73.196 | 97 | 26 | 0 | 1 | 97 | 1 | 97 | 8.45e-52 | 158 |
| Msa0175630 | AT2G30540.1 | 66.327 | 98 | 33 | 0 | 1 | 98 | 1 | 98 | 2.72e-51 | 157 |
| Msa0175630 | AT3G62960.1 | 70.408 | 98 | 29 | 0 | 1 | 98 | 1 | 98 | 8.50e-51 | 155 |
| Msa0175630 | AT3G62950.1 | 51.042 | 96 | 46 | 1 | 1 | 95 | 1 | 96 | 2.05e-36 | 119 |
| Msa0175630 | AT2G47870.1 | 54.167 | 96 | 43 | 1 | 1 | 95 | 1 | 96 | 6.63e-36 | 118 |
| Msa0175630 | AT4G15670.1 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 3.04e-34 | 114 |
| Msa0175630 | AT4G15680.1 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.06e-33 | 112 |
| Msa0175630 | AT4G15660.1 | 49.485 | 97 | 49 | 0 | 1 | 97 | 1 | 97 | 1.11e-33 | 112 |
| Msa0175630 | AT4G15700.1 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.21e-33 | 112 |
| Msa0175630 | AT3G21460.1 | 53.684 | 95 | 44 | 0 | 1 | 95 | 1 | 95 | 1.32e-33 | 112 |
| Msa0175630 | AT4G15690.1 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 5.36e-33 | 110 |
| Msa0175630 | AT5G18600.1 | 46.316 | 95 | 51 | 0 | 1 | 95 | 1 | 95 | 8.06e-31 | 105 |
| Msa0175630 | AT5G14070.1 | 42.718 | 103 | 51 | 2 | 1 | 95 | 31 | 133 | 8.83e-26 | 93.6 |
| Msa0175630 | AT3G62930.1 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 1.57e-25 | 92.0 |
| Msa0175630 | AT1G03020.1 | 43.158 | 95 | 54 | 0 | 1 | 95 | 1 | 95 | 8.46e-25 | 90.1 |
| Msa0175630 | AT3G02000.1 | 42.424 | 99 | 51 | 1 | 3 | 95 | 31 | 129 | 2.42e-24 | 89.7 |
| Msa0175630 | AT1G28480.1 | 36.735 | 98 | 58 | 2 | 2 | 95 | 33 | 130 | 2.38e-17 | 72.0 |
| Msa0175630 | AT4G33040.1 | 39.175 | 97 | 53 | 2 | 3 | 94 | 41 | 136 | 3.13e-16 | 69.3 |
| Msa0175630 | AT5G40370.1 | 35.106 | 94 | 61 | 0 | 1 | 94 | 3 | 96 | 1.06e-15 | 67.0 |
| Msa0175630 | AT5G11930.1 | 41.935 | 93 | 44 | 4 | 3 | 94 | 57 | 140 | 5.30e-15 | 66.2 |
| Msa0175630 | AT4G28730.1 | 31.915 | 94 | 63 | 1 | 2 | 94 | 71 | 164 | 1.23e-13 | 63.2 |
| Msa0175630 | AT5G63030.1 | 37.805 | 82 | 51 | 0 | 13 | 94 | 31 | 112 | 3.67e-13 | 60.8 |
| Msa0175630 | AT5G20500.1 | 29.670 | 91 | 64 | 0 | 4 | 94 | 35 | 125 | 2.84e-11 | 56.2 |
| Msa0175630 | AT2G20270.1 | 31.915 | 94 | 63 | 1 | 2 | 94 | 76 | 169 | 2.86e-11 | 57.0 |
| Msa0175630 | AT1G03850.2 | 34.884 | 86 | 52 | 2 | 10 | 95 | 62 | 143 | 4.69e-11 | 56.2 |
Find 35 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGTACACTCCAATTTCT+TGG | 0.312373 | 1_4:+61639633 | None:intergenic |
| TTCTCCATTTCTTTCCCATC+AGG | 0.358196 | 1_4:+61639587 | None:intergenic |
| GGAGAAAGCTATAACAAAGT+TGG | 0.418322 | 1_4:-61639570 | Msa0175630:CDS |
| AGATCCTGATGGGAAAGAAA+TGG | 0.430695 | 1_4:-61639591 | Msa0175630:CDS |
| CCTGTCCCTGCAGTATTCAT+TGG | 0.431206 | 1_4:-61639536 | Msa0175630:CDS |
| GTGTAGGGACATTACTTCAT+TGG | 0.438643 | 1_4:+61639493 | None:intergenic |
| TGATCAAAGTAAGCTAAATT+CGG | 0.447173 | 1_4:+61639435 | None:intergenic |
| GAGAAAGCTATAACAAAGTT+GGG | 0.448427 | 1_4:-61639569 | Msa0175630:CDS |
| TTGTCAATTTCATGAATCAC+AGG | 0.463222 | 1_4:+61639614 | None:intergenic |
| CTTCCTCCAATGAATACTGC+AGG | 0.488474 | 1_4:+61639530 | None:intergenic |
| GATGAGGCTAGCTACAGAAA+AGG | 0.500022 | 1_4:-61639714 | Msa0175630:CDS |
| GCATAGACAACAAGAGCTCT+TGG | 0.505172 | 1_4:+61639676 | None:intergenic |
| TCATTGGAGGAAGGCTGGTG+GGG | 0.511910 | 1_4:-61639520 | Msa0175630:CDS |
| TTCATTGGAGGAAGGCTGGT+GGG | 0.512409 | 1_4:-61639521 | Msa0175630:CDS |
| CCAATGAATACTGCAGGGAC+AGG | 0.522380 | 1_4:+61639536 | None:intergenic |
| GTTCACTTGTTCCACTACTC+AGG | 0.536048 | 1_4:-61639463 | Msa0175630:CDS |
| AGTATTCATTGGAGGAAGGC+TGG | 0.536333 | 1_4:-61639525 | Msa0175630:CDS |
| ATGAGGCTAGCTACAGAAAA+GGG | 0.537218 | 1_4:-61639713 | Msa0175630:CDS |
| GTCCCTGCAGTATTCATTGG+AGG | 0.543693 | 1_4:-61639533 | Msa0175630:CDS |
| GAAATTGACAAAGATCCTGA+TGG | 0.544778 | 1_4:-61639602 | Msa0175630:CDS |
| AAAGTAAGCTAAATTCGGTA+TGG | 0.551896 | 1_4:+61639440 | None:intergenic |
| TAGGGACATTACTTCATTGG+TGG | 0.552920 | 1_4:+61639496 | None:intergenic |
| ATTCGGTATGGCCTGAGTAG+TGG | 0.556723 | 1_4:+61639452 | None:intergenic |
| CAAGTGAACCACTTAGGTGT+AGG | 0.571843 | 1_4:+61639477 | None:intergenic |
| ATTCATTGGAGGAAGGCTGG+TGG | 0.573512 | 1_4:-61639522 | Msa0175630:CDS |
| AAGTGAACCACTTAGGTGTA+GGG | 0.580489 | 1_4:+61639478 | None:intergenic |
| GTGGAACAAGTGAACCACTT+AGG | 0.593219 | 1_4:+61639471 | None:intergenic |
| AGCTACAGAAAAGGGTGTGG+TGG | 0.593409 | 1_4:-61639705 | Msa0175630:CDS |
| CTGCAGTATTCATTGGAGGA+AGG | 0.598971 | 1_4:-61639529 | Msa0175630:CDS |
| GTAATGTCCCTACACCTAAG+TGG | 0.609456 | 1_4:-61639485 | Msa0175630:CDS |
| AAATTGACAAAGATCCTGAT+GGG | 0.612548 | 1_4:-61639601 | Msa0175630:CDS |
| TTCCTCCAATGAATACTGCA+GGG | 0.637919 | 1_4:+61639531 | None:intergenic |
| GCTAGCTACAGAAAAGGGTG+TGG | 0.645043 | 1_4:-61639708 | Msa0175630:CDS |
| TGTCAATTTCATGAATCACA+GGG | 0.646979 | 1_4:+61639615 | None:intergenic |
| TTAAGATGGAGAAGGTGATG+AGG | 0.659848 | 1_4:-61639730 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTTTGTTCCAAGAAAT+TGG | - | chr1_4:61639529-61639548 | Msa0175630:CDS | 25.0% |
| TGTCAATTTCATGAATCACA+GGG | + | chr1_4:61639561-61639580 | None:intergenic | 30.0% | |
| TTGTCAATTTCATGAATCAC+AGG | + | chr1_4:61639562-61639581 | None:intergenic | 30.0% | |
| AAATTGACAAAGATCCTGAT+GGG | - | chr1_4:61639572-61639591 | Msa0175630:CDS | 30.0% | |
| GAGAAAGCTATAACAAAGTT+GGG | - | chr1_4:61639604-61639623 | Msa0175630:CDS | 30.0% | |
| GAAATTGACAAAGATCCTGA+TGG | - | chr1_4:61639571-61639590 | Msa0175630:CDS | 35.0% | |
| GGAGAAAGCTATAACAAAGT+TGG | - | chr1_4:61639603-61639622 | Msa0175630:CDS | 35.0% | |
| ! | ATGAGGCTAGCTACAGAAAA+GGG | - | chr1_4:61639460-61639479 | Msa0175630:CDS | 40.0% |
| AGATCCTGATGGGAAAGAAA+TGG | - | chr1_4:61639582-61639601 | Msa0175630:CDS | 40.0% | |
| TTCTCCATTTCTTTCCCATC+AGG | + | chr1_4:61639589-61639608 | None:intergenic | 40.0% | |
| TTCCTCCAATGAATACTGCA+GGG | + | chr1_4:61639645-61639664 | None:intergenic | 40.0% | |
| TAGGGACATTACTTCATTGG+TGG | + | chr1_4:61639680-61639699 | None:intergenic | 40.0% | |
| GTGTAGGGACATTACTTCAT+TGG | + | chr1_4:61639683-61639702 | None:intergenic | 40.0% | |
| AAGTGAACCACTTAGGTGTA+GGG | + | chr1_4:61639698-61639717 | None:intergenic | 40.0% | |
| ! | GATGAGGCTAGCTACAGAAA+AGG | - | chr1_4:61639459-61639478 | Msa0175630:CDS | 45.0% |
| GCATAGACAACAAGAGCTCT+TGG | + | chr1_4:61639500-61639519 | None:intergenic | 45.0% | |
| CAGGGTACACTCCAATTTCT+TGG | + | chr1_4:61639543-61639562 | None:intergenic | 45.0% | |
| CTTCCTCCAATGAATACTGC+AGG | + | chr1_4:61639646-61639665 | None:intergenic | 45.0% | |
| CTGCAGTATTCATTGGAGGA+AGG | - | chr1_4:61639644-61639663 | Msa0175630:CDS | 45.0% | |
| AGTATTCATTGGAGGAAGGC+TGG | - | chr1_4:61639648-61639667 | Msa0175630:CDS | 45.0% | |
| GTAATGTCCCTACACCTAAG+TGG | - | chr1_4:61639688-61639707 | Msa0175630:CDS | 45.0% | |
| CAAGTGAACCACTTAGGTGT+AGG | + | chr1_4:61639699-61639718 | None:intergenic | 45.0% | |
| GTGGAACAAGTGAACCACTT+AGG | + | chr1_4:61639705-61639724 | None:intergenic | 45.0% | |
| GTTCACTTGTTCCACTACTC+AGG | - | chr1_4:61639710-61639729 | Msa0175630:CDS | 45.0% | |
| GCTAGCTACAGAAAAGGGTG+TGG | - | chr1_4:61639465-61639484 | Msa0175630:CDS | 50.0% | |
| ! | AGCTACAGAAAAGGGTGTGG+TGG | - | chr1_4:61639468-61639487 | Msa0175630:CDS | 50.0% |
| CCAATGAATACTGCAGGGAC+AGG | + | chr1_4:61639640-61639659 | None:intergenic | 50.0% | |
| CCTGTCCCTGCAGTATTCAT+TGG | - | chr1_4:61639637-61639656 | Msa0175630:CDS | 50.0% | |
| GTCCCTGCAGTATTCATTGG+AGG | - | chr1_4:61639640-61639659 | Msa0175630:CDS | 50.0% | |
| ATTCATTGGAGGAAGGCTGG+TGG | - | chr1_4:61639651-61639670 | Msa0175630:CDS | 50.0% | |
| TTCATTGGAGGAAGGCTGGT+GGG | - | chr1_4:61639652-61639671 | Msa0175630:CDS | 50.0% | |
| ATTCGGTATGGCCTGAGTAG+TGG | + | chr1_4:61639724-61639743 | None:intergenic | 50.0% | |
| TCATTGGAGGAAGGCTGGTG+GGG | - | chr1_4:61639653-61639672 | Msa0175630:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61639448 | 61639747 | 61639448 | ID=Msa0175630;Name=Msa0175630 |
| chr1_4 | mRNA | 61639448 | 61639747 | 61639448 | ID=Msa0175630-mRNA-1;Parent=Msa0175630;Name=Msa0175630-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|99 |
| chr1_4 | exon | 61639448 | 61639747 | 61639448 | ID=Msa0175630-mRNA-1:exon:19721;Parent=Msa0175630-mRNA-1 |
| chr1_4 | CDS | 61639448 | 61639747 | 61639448 | ID=Msa0175630-mRNA-1:cds;Parent=Msa0175630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
