AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098400 MtrunA17_Chr1g0151751 100.000 267 0 0 1 267 1 267 0.0 548
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098400 AT1G64520.1 83.521 267 44 0 1 267 1 267 4.55e-159 442
Msa0098400 AT5G42040.1 62.921 267 65 2 1 267 1 233 7.24e-113 324

Find 87 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGAAACTTCTGTGAATT+TGG 0.038934 1_3:+4340843 None:intergenic
TGGGATCCATATCGTGATTT+TGG 0.114449 1_3:+4340863 None:intergenic
CCGTTCTTGATTTCCCATTC+AGG 0.264023 1_3:+4337056 None:intergenic
CACTTGCAGGTGTTACTAAC+AGG 0.267676 1_3:-4339648 Msa0098400:intron
GGAGTTGGAGCAATCCTTTA+TGG 0.271340 1_3:-4337808 Msa0098400:CDS
TGTGTATTTCATGGATCTTT+TGG 0.284808 1_3:-4337730 Msa0098400:CDS
TTCCAAGAGTTCCTGGTCTT+TGG 0.286082 1_3:+4337275 None:intergenic
TTAGACAGTATTAGCAATCT+TGG 0.294273 1_3:+4336888 None:intergenic
GTTAGCTCTTGAACTGCATT+AGG 0.332972 1_3:+4339591 None:intergenic
GGAACTCTTGGAATATATTA+AGG 0.340067 1_3:-4337265 Msa0098400:CDS
TGCTGAATTCCATACTGAAT+TGG 0.350776 1_3:-4337880 Msa0098400:CDS
TGAGAAACTTCTGTGAATTT+GGG 0.351752 1_3:+4340844 None:intergenic
CCCTAGCATAACTAAGTGTT+TGG 0.361635 1_3:+4336964 None:intergenic
GACTACTATATCGTCAGAAT+TGG 0.363930 1_3:-4336726 Msa0098400:three_prime_UTR
TAATATATTCCAAGAGTTCC+TGG 0.370117 1_3:+4337268 None:intergenic
TGGGTACTCCTGAGGAGATT+GGG 0.370608 1_3:+4337947 None:intergenic
GTGTTTGGTTGATGAGTTGC+AGG 0.382114 1_3:+4336979 None:intergenic
TGAATTTCAAATCCATTGTA+AGG 0.394403 1_3:-4336695 Msa0098400:three_prime_UTR
TGAGACTTCTTGTGCAGAAT+AGG 0.396052 1_3:-4337905 Msa0098400:CDS
CGTTCTTGATTTCCCATTCA+GGG 0.400779 1_3:+4337057 None:intergenic
TGAAACATATGTGTATTTCA+TGG 0.407221 1_3:-4337739 Msa0098400:CDS
AAAGCAATTCCAATTCAGTA+TGG 0.408550 1_3:+4337871 None:intergenic
CAATTCCCAAAATCACGATA+TGG 0.413083 1_3:-4340869 Msa0098400:exon
GAAAAGAAATGGATGCAATA+TGG 0.416415 1_3:-4336923 Msa0098400:three_prime_UTR
TTGGGTACTCCTGAGGAGAT+TGG 0.426130 1_3:+4337946 None:intergenic
CACCAAAGACCAGGAACTCT+TGG 0.427127 1_3:-4337277 Msa0098400:CDS
TACCGTGCATCAGTGTAGTA+AGG 0.430307 1_3:+4338226 None:intergenic
ATTGCTTTCATCCACTGCTC+TGG 0.436359 1_3:-4337856 Msa0098400:CDS
AGAATGGTGGTGCGCAAGGC+TGG 0.449267 1_3:-4336604 Msa0098400:three_prime_UTR
GTTGTATGCCCCTTCCATAA+AGG 0.451259 1_3:+4337794 None:intergenic
CCTCAGGAGTACCCAATACT+TGG 0.457349 1_3:-4337939 Msa0098400:CDS
GAGGATTGTCTGAAAAGAAA+TGG 0.459740 1_3:-4336934 Msa0098400:exon
CACTGTAAAGAAGAAAGAAA+AGG 0.461623 1_3:+4336774 None:intergenic
ATAAAGCTACTTTGTTGAGA+AGG 0.465497 1_3:-4340978 Msa0098400:five_prime_UTR
ACAGGTTGAGACCAAGTATT+GGG 0.478577 1_3:+4337928 None:intergenic
TCTGCACAAGAAGTCTCAAC+AGG 0.487747 1_3:+4337910 None:intergenic
ACTTAGTTATGCTAGGGAGT+TGG 0.495838 1_3:-4336958 Msa0098400:CDS
GGTTAGAGTGTACCTTGAGC+TGG 0.497473 1_3:+4340755 None:intergenic
TATTAAGCATGCCGTGGAGT+TGG 0.497949 1_3:-4337823 Msa0098400:CDS
TCACTTCAGAAAATTTAGAA+TGG 0.498720 1_3:-4336620 Msa0098400:three_prime_UTR
GATTTCAGGAGCACCCTGAA+TGG 0.499374 1_3:-4337070 Msa0098400:intron
ATTTCAGGAGCACCCTGAAT+GGG 0.504260 1_3:-4337069 Msa0098400:intron
GTAAGGTTCATATTCAAATG+AGG 0.511909 1_3:-4336678 Msa0098400:three_prime_UTR
TCGTCTTCCCCAATCTCCTC+AGG 0.513848 1_3:-4337955 Msa0098400:CDS
AGGGAGGGTATTTCTTTGCA+AGG 0.516901 1_3:+4336999 None:intergenic
ACTGTAAAGAAGAAAGAAAA+GGG 0.520554 1_3:+4336775 None:intergenic
TTGAAAGAAATCTCTTTCAA+AGG 0.524033 1_3:+4338255 None:intergenic
TGGTTGATGAGTTGCAGGGA+GGG 0.525378 1_3:+4336984 None:intergenic
GGAGCAATCCTTTATGGAAG+GGG 0.535947 1_3:-4337802 Msa0098400:CDS
TTTGAATATGAACCTTACAA+TGG 0.545098 1_3:+4336683 None:intergenic
TTGGAGCAATCCTTTATGGA+AGG 0.551519 1_3:-4337804 Msa0098400:CDS
TAAGGTTCATATTCAAATGA+GGG 0.553881 1_3:-4336677 Msa0098400:three_prime_UTR
ATTAGGTGTATCTGCAAACA+AGG 0.554484 1_3:+4339608 None:intergenic
CTTCAGAAAATTTAGAATGG+TGG 0.557319 1_3:-4336617 Msa0098400:three_prime_UTR
AACAGGTTGAGACCAAGTAT+TGG 0.562540 1_3:+4337927 None:intergenic
GAATCTCCTTTCCCAGCTCA+AGG 0.562925 1_3:-4340767 Msa0098400:intron
ATTTAGAATGGTGGTGCGCA+AGG 0.564590 1_3:-4336608 Msa0098400:three_prime_UTR
TGAAGTGATCAAAGAATACA+AGG 0.573208 1_3:+4336635 None:intergenic
TGGAGCAATCCTTTATGGAA+GGG 0.575444 1_3:-4337803 Msa0098400:CDS
ACGTTCAGAGATGAGATAGC+AGG 0.577525 1_3:-4337360 Msa0098400:intron
AGTGTACCTTGAGCTGGGAA+AGG 0.581779 1_3:+4340761 None:intergenic
GATAGCAGGATGCAGTGAGA+AGG 0.587670 1_3:-4337346 Msa0098400:CDS
CCAAACACTTAGTTATGCTA+GGG 0.588753 1_3:-4336964 Msa0098400:CDS
GTTAGAGTGTACCTTGAGCT+GGG 0.589939 1_3:+4340756 None:intergenic
TATCTGCAAACAAGGGTGGA+AGG 0.590332 1_3:+4339616 None:intergenic
GGGTACTCCTGAGGAGATTG+GGG 0.592535 1_3:+4337948 None:intergenic
ACCAAACACTTAGTTATGCT+AGG 0.593116 1_3:-4336965 Msa0098400:CDS
TCCACGGCATGCTTAATACA+AGG 0.594862 1_3:+4337828 None:intergenic
TTGGTTGATGAGTTGCAGGG+AGG 0.604694 1_3:+4336983 None:intergenic
TGTTTGGTTGATGAGTTGCA+GGG 0.615391 1_3:+4336980 None:intergenic
GGTGTATCTGCAAACAAGGG+TGG 0.618117 1_3:+4339612 None:intergenic
ACAAGGATTCTCCAGAGCAG+TGG 0.619513 1_3:+4337845 None:intergenic
AAAGGATTGCTCCAACTCCA+CGG 0.630188 1_3:+4337812 None:intergenic
GTTATGCTAGGGAGTTGGAG+AGG 0.631284 1_3:-4336953 Msa0098400:CDS
ACTTGCAGGTGTTACTAACA+GGG 0.633305 1_3:-4339647 Msa0098400:intron
AACCTTACTACACTGATGCA+CGG 0.640807 1_3:-4338228 Msa0098400:intron
TCTGTCGAGCACTCAAGACA+CGG 0.643446 1_3:+4337772 None:intergenic
TCCTTGTATTAAGCATGCCG+TGG 0.644930 1_3:-4337829 Msa0098400:CDS
TGTTTAGTTCTGATTCAGTG+TGG 0.645308 1_3:-4336859 Msa0098400:three_prime_UTR
CCAAGTATTGGGTACTCCTG+AGG 0.648239 1_3:+4337939 None:intergenic
GTTGCTGTTCACCAAAGACC+AGG 0.651601 1_3:-4337286 Msa0098400:CDS
AAATACACATATGTTTCATG+TGG 0.652663 1_3:+4337744 None:intergenic
ACTCTTGGAATATATTAAGG+AGG 0.657443 1_3:-4337262 Msa0098400:intron
CCTGAATGGGAAATCAAGAA+CGG 0.657945 1_3:-4337056 Msa0098400:CDS
AGAAAGAAAAGGGTACACAA+AGG 0.698861 1_3:+4336785 None:intergenic
CTGGGAAAGGAGATTCGAAG+CGG 0.699565 1_3:+4340774 None:intergenic
TTAGGTGTATCTGCAAACAA+GGG 0.724231 1_3:+4339609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAAAAAAAAAAATA+CGG + chr1_3:4338185-4338204 None:intergenic 0.0%
!!! TTTTATTAAAAAAAAAAATA+CGG + chr1_3:4338185-4338204 None:intergenic 0.0%
!! ATTTGTATAAAAAAATTAAG+AGG - chr1_3:4336999-4337018 Msa0098400:CDS 10.0%
!! TTTGTATAAAAAAATTAAGA+GGG - chr1_3:4337000-4337019 Msa0098400:CDS 10.0%
!!! ATAGTTTTTATTTCTAAAAT+TGG - chr1_3:4338470-4338489 Msa0098400:intron 10.0%
!! TATATGTATATTACTAAAAT+AGG + chr1_3:4338695-4338714 None:intergenic 10.0%
!!! TTTATTTTGTATAATTGATA+TGG + chr1_3:4339144-4339163 None:intergenic 10.0%
!! AAGTAAAAAAAATAAATAGA+TGG + chr1_3:4339995-4340014 None:intergenic 10.0%
!! ATTTGTATAAAAAAATTAAG+AGG - chr1_3:4336999-4337018 Msa0098400:CDS 10.0%
!! TTTGTATAAAAAAATTAAGA+GGG - chr1_3:4337000-4337019 Msa0098400:CDS 10.0%
!!! ATAGTTTTTATTTCTAAAAT+TGG - chr1_3:4338470-4338489 Msa0098400:intron 10.0%
!! TATATGTATATTACTAAAAT+AGG + chr1_3:4338695-4338714 None:intergenic 10.0%
!!! TTTATTTTGTATAATTGATA+TGG + chr1_3:4339144-4339163 None:intergenic 10.0%
!! AAGTAAAAAAAATAAATAGA+TGG + chr1_3:4339995-4340014 None:intergenic 10.0%
!! TTGTATAAAAAAATTAAGAG+GGG - chr1_3:4337001-4337020 Msa0098400:CDS 15.0%
!!! CTAAAATATGTTTCTTTTAT+AGG + chr1_3:4337227-4337246 None:intergenic 15.0%
!!! CACTAAAATCTTTTATTTTT+AGG + chr1_3:4337464-4337483 None:intergenic 15.0%
!!! CTAAAAATAAAAGATTTTAG+TGG - chr1_3:4337462-4337481 Msa0098400:intron 15.0%
!!! TATTGTAAATGACATTTTAA+TGG - chr1_3:4338254-4338273 Msa0098400:CDS 15.0%
!! ATTACTAATAACACAAAATA+CGG + chr1_3:4338627-4338646 None:intergenic 15.0%
!!! TAACATAATTGATTTATGTT+TGG + chr1_3:4338784-4338803 None:intergenic 15.0%
!! AATTATTTCATAATCAATTC+TGG - chr1_3:4338840-4338859 Msa0098400:intron 15.0%
!! AGTGAATCTTAAATTAAATT+AGG - chr1_3:4338904-4338923 Msa0098400:intron 15.0%
!! AATCTTAAATTAAATTAGGT+TGG - chr1_3:4338908-4338927 Msa0098400:intron 15.0%
!!! AAGAGTTTTTATACTAAAAT+TGG - chr1_3:4339069-4339088 Msa0098400:intron 15.0%
!! TTGTATAAAAAAATTAAGAG+GGG - chr1_3:4337001-4337020 Msa0098400:CDS 15.0%
!!! CTAAAATATGTTTCTTTTAT+AGG + chr1_3:4337227-4337246 None:intergenic 15.0%
!!! CACTAAAATCTTTTATTTTT+AGG + chr1_3:4337464-4337483 None:intergenic 15.0%
!!! CTAAAAATAAAAGATTTTAG+TGG - chr1_3:4337462-4337481 Msa0098400:intron 15.0%
!!! TATTGTAAATGACATTTTAA+TGG - chr1_3:4338254-4338273 Msa0098400:CDS 15.0%
!! ATTACTAATAACACAAAATA+CGG + chr1_3:4338627-4338646 None:intergenic 15.0%
!!! TAACATAATTGATTTATGTT+TGG + chr1_3:4338784-4338803 None:intergenic 15.0%
!! AATTATTTCATAATCAATTC+TGG - chr1_3:4338840-4338859 Msa0098400:intron 15.0%
!! AGTGAATCTTAAATTAAATT+AGG - chr1_3:4338904-4338923 Msa0098400:intron 15.0%
!! AATCTTAAATTAAATTAGGT+TGG - chr1_3:4338908-4338927 Msa0098400:intron 15.0%
!!! AAGAGTTTTTATACTAAAAT+TGG - chr1_3:4339069-4339088 Msa0098400:intron 15.0%
!!! AAAAGAAACATATTTTAGAG+AGG - chr1_3:4337229-4337248 Msa0098400:intron 20.0%
!! TTAATAAACTCAGTTATTGT+AGG - chr1_3:4337806-4337825 Msa0098400:CDS 20.0%
!! TAATAAACTCAGTTATTGTA+GGG - chr1_3:4337807-4337826 Msa0098400:CDS 20.0%
!! TTATGGAAAACTAAATGATA+AGG + chr1_3:4337835-4337854 None:intergenic 20.0%
!! AAATTCTCGACAAATAATTA+TGG + chr1_3:4337852-4337871 None:intergenic 20.0%
!! CAAAGAAAAAGTAAAAATAC+AGG + chr1_3:4338136-4338155 None:intergenic 20.0%
!! ATATGAGTGAATCTTAAATT+AGG - chr1_3:4338228-4338247 Msa0098400:intron 20.0%
!! TGTGTTAATTTATGATGTTT+GGG + chr1_3:4338740-4338759 None:intergenic 20.0%
!! TTGTGTTAATTTATGATGTT+TGG + chr1_3:4338741-4338760 None:intergenic 20.0%
!!! GATAGATAAATTTTTCTATC+TGG - chr1_3:4338973-4338992 Msa0098400:intron 20.0%
!! TGTATAATTGATATGGAAAA+TGG + chr1_3:4339137-4339156 None:intergenic 20.0%
!!! ATTTTTTTTACTTCTGAAGT+TGG - chr1_3:4340002-4340021 Msa0098400:intron 20.0%
!! AGATATACTAATTATAGAAC+CGG + chr1_3:4340522-4340541 None:intergenic 20.0%
!!! AAAAGAAACATATTTTAGAG+AGG - chr1_3:4337229-4337248 Msa0098400:intron 20.0%
!! TTAATAAACTCAGTTATTGT+AGG - chr1_3:4337806-4337825 Msa0098400:CDS 20.0%
!! TAATAAACTCAGTTATTGTA+GGG - chr1_3:4337807-4337826 Msa0098400:CDS 20.0%
!! TTATGGAAAACTAAATGATA+AGG + chr1_3:4337835-4337854 None:intergenic 20.0%
!! AAATTCTCGACAAATAATTA+TGG + chr1_3:4337852-4337871 None:intergenic 20.0%
!! CAAAGAAAAAGTAAAAATAC+AGG + chr1_3:4338136-4338155 None:intergenic 20.0%
!! ATATGAGTGAATCTTAAATT+AGG - chr1_3:4338228-4338247 Msa0098400:intron 20.0%
!! TGTGTTAATTTATGATGTTT+GGG + chr1_3:4338740-4338759 None:intergenic 20.0%
!! TTGTGTTAATTTATGATGTT+TGG + chr1_3:4338741-4338760 None:intergenic 20.0%
!!! GATAGATAAATTTTTCTATC+TGG - chr1_3:4338973-4338992 Msa0098400:intron 20.0%
!! TGTATAATTGATATGGAAAA+TGG + chr1_3:4339137-4339156 None:intergenic 20.0%
!!! ATTTTTTTTACTTCTGAAGT+TGG - chr1_3:4340002-4340021 Msa0098400:intron 20.0%
!! AGATATACTAATTATAGAAC+CGG + chr1_3:4340522-4340541 None:intergenic 20.0%
! AACACACAACATTGAAATTA+GGG + chr1_3:4336911-4336930 None:intergenic 25.0%
! ATAACCTAATGACCTAAATA+AGG - chr1_3:4337113-4337132 Msa0098400:intron 25.0%
! GATATTCTTGTGAAGTAAAA+TGG - chr1_3:4337272-4337291 Msa0098400:CDS 25.0%
!!! AAATAAAAGATTTTAGTGGC+AGG - chr1_3:4337466-4337485 Msa0098400:intron 25.0%
!! TCTTGATACTTGTTAGTTAT+TGG - chr1_3:4337569-4337588 Msa0098400:intron 25.0%
!! CTTGATACTTGTTAGTTATT+GGG - chr1_3:4337570-4337589 Msa0098400:intron 25.0%
! TCATATGATATTTGATAAGG+TGG + chr1_3:4338214-4338233 None:intergenic 25.0%
! CACTCATATGATATTTGATA+AGG + chr1_3:4338217-4338236 None:intergenic 25.0%
!!! AAATTAAATTAGGTTGGAAG+AGG - chr1_3:4338914-4338933 Msa0098400:intron 25.0%
!!! TGACAAATACTGTATTTTAG+AGG - chr1_3:4339034-4339053 Msa0098400:intron 25.0%
! AATTAATATGATCGAGTCAT+GGG + chr1_3:4339183-4339202 None:intergenic 25.0%
! TAATTAATATGATCGAGTCA+TGG + chr1_3:4339184-4339203 None:intergenic 25.0%
!! TCTTCTTGTTGAAAATTTTC+AGG - chr1_3:4339284-4339303 Msa0098400:intron 25.0%
!! CTTCTTGTTGAAAATTTTCA+GGG - chr1_3:4339285-4339304 Msa0098400:intron 25.0%
!! TTCTTGTTGAAAATTTTCAG+GGG - chr1_3:4339286-4339305 Msa0098400:intron 25.0%
! TTGAAAGAAATCTCTTTCAA+AGG + chr1_3:4339363-4339382 None:intergenic 25.0%
!! ATTGTGTACTTGTTAACAAA+GGG + chr1_3:4339427-4339446 None:intergenic 25.0%
!! TATTGTGTACTTGTTAACAA+AGG + chr1_3:4339428-4339447 None:intergenic 25.0%
! CTACAAGGTAATATACTATA+AGG + chr1_3:4339521-4339540 None:intergenic 25.0%
! TGTTGAGCTATTGTAATTTA+TGG - chr1_3:4339614-4339633 Msa0098400:CDS 25.0%
! AAATACACATATGTTTCATG+TGG + chr1_3:4339874-4339893 None:intergenic 25.0%
! TGAAACATATGTGTATTTCA+TGG - chr1_3:4339876-4339895 Msa0098400:intron 25.0%
! TTATAATAATGGTTGTGCTT+CGG + chr1_3:4340150-4340169 None:intergenic 25.0%
!!! TTAGTATATCTACTGATTTC+AGG - chr1_3:4340531-4340550 Msa0098400:intron 25.0%
!!! TCTCTTTATTTTGTTCATCT+AGG - chr1_3:4340795-4340814 Msa0098400:CDS 25.0%
! ACTGTAAAGAAGAAAGAAAA+GGG + chr1_3:4340843-4340862 None:intergenic 25.0%
! TGAATTTCAAATCCATTGTA+AGG - chr1_3:4340920-4340939 Msa0098400:five_prime_UTR 25.0%
! TTTGAATATGAACCTTACAA+TGG + chr1_3:4340935-4340954 None:intergenic 25.0%
! TAAGGTTCATATTCAAATGA+GGG - chr1_3:4340938-4340957 Msa0098400:five_prime_UTR 25.0%
! TCACTTCAGAAAATTTAGAA+TGG - chr1_3:4340995-4341014 Msa0098400:five_prime_UTR 25.0%
! AACACACAACATTGAAATTA+GGG + chr1_3:4336911-4336930 None:intergenic 25.0%
! ATAACCTAATGACCTAAATA+AGG - chr1_3:4337113-4337132 Msa0098400:intron 25.0%
! GATATTCTTGTGAAGTAAAA+TGG - chr1_3:4337272-4337291 Msa0098400:CDS 25.0%
!!! AAATAAAAGATTTTAGTGGC+AGG - chr1_3:4337466-4337485 Msa0098400:intron 25.0%
!! TCTTGATACTTGTTAGTTAT+TGG - chr1_3:4337569-4337588 Msa0098400:intron 25.0%
!! CTTGATACTTGTTAGTTATT+GGG - chr1_3:4337570-4337589 Msa0098400:intron 25.0%
! TCATATGATATTTGATAAGG+TGG + chr1_3:4338214-4338233 None:intergenic 25.0%
! CACTCATATGATATTTGATA+AGG + chr1_3:4338217-4338236 None:intergenic 25.0%
!!! AAATTAAATTAGGTTGGAAG+AGG - chr1_3:4338914-4338933 Msa0098400:intron 25.0%
!!! TGACAAATACTGTATTTTAG+AGG - chr1_3:4339034-4339053 Msa0098400:intron 25.0%
! AATTAATATGATCGAGTCAT+GGG + chr1_3:4339183-4339202 None:intergenic 25.0%
! TAATTAATATGATCGAGTCA+TGG + chr1_3:4339184-4339203 None:intergenic 25.0%
!! TCTTCTTGTTGAAAATTTTC+AGG - chr1_3:4339284-4339303 Msa0098400:intron 25.0%
!! CTTCTTGTTGAAAATTTTCA+GGG - chr1_3:4339285-4339304 Msa0098400:intron 25.0%
!! TTCTTGTTGAAAATTTTCAG+GGG - chr1_3:4339286-4339305 Msa0098400:intron 25.0%
! TTGAAAGAAATCTCTTTCAA+AGG + chr1_3:4339363-4339382 None:intergenic 25.0%
!! ATTGTGTACTTGTTAACAAA+GGG + chr1_3:4339427-4339446 None:intergenic 25.0%
!! TATTGTGTACTTGTTAACAA+AGG + chr1_3:4339428-4339447 None:intergenic 25.0%
! CTACAAGGTAATATACTATA+AGG + chr1_3:4339521-4339540 None:intergenic 25.0%
! TGTTGAGCTATTGTAATTTA+TGG - chr1_3:4339614-4339633 Msa0098400:CDS 25.0%
! AAATACACATATGTTTCATG+TGG + chr1_3:4339874-4339893 None:intergenic 25.0%
! TGAAACATATGTGTATTTCA+TGG - chr1_3:4339876-4339895 Msa0098400:intron 25.0%
! TTATAATAATGGTTGTGCTT+CGG + chr1_3:4340150-4340169 None:intergenic 25.0%
!!! TTAGTATATCTACTGATTTC+AGG - chr1_3:4340531-4340550 Msa0098400:intron 25.0%
!!! TCTCTTTATTTTGTTCATCT+AGG - chr1_3:4340795-4340814 Msa0098400:CDS 25.0%
! ACTGTAAAGAAGAAAGAAAA+GGG + chr1_3:4340843-4340862 None:intergenic 25.0%
! TGAATTTCAAATCCATTGTA+AGG - chr1_3:4340920-4340939 Msa0098400:five_prime_UTR 25.0%
! TTTGAATATGAACCTTACAA+TGG + chr1_3:4340935-4340954 None:intergenic 25.0%
! TAAGGTTCATATTCAAATGA+GGG - chr1_3:4340938-4340957 Msa0098400:five_prime_UTR 25.0%
! TCACTTCAGAAAATTTAGAA+TGG - chr1_3:4340995-4341014 Msa0098400:five_prime_UTR 25.0%
! ATAAAGCTACTTTGTTGAGA+AGG - chr1_3:4336637-4336656 Msa0098400:three_prime_UTR 30.0%
TGAGAAACTTCTGTGAATTT+GGG + chr1_3:4336774-4336793 None:intergenic 30.0%
AAAGAAACTAGGGTTTAGTA+GGG + chr1_3:4336884-4336903 None:intergenic 30.0%
CAACACACAACATTGAAATT+AGG + chr1_3:4336912-4336931 None:intergenic 30.0%
CTAATGACCTAAATAAGGAA+CGG - chr1_3:4337118-4337137 Msa0098400:intron 30.0%
!! CATTTTTCCGTTCCTTATTT+AGG + chr1_3:4337128-4337147 None:intergenic 30.0%
!! TAAGATGGTTTTTCAGAAAC+TGG - chr1_3:4337148-4337167 Msa0098400:intron 30.0%
!! AAGATGGTTTTTCAGAAACT+GGG - chr1_3:4337149-4337168 Msa0098400:intron 30.0%
TTGTGAAGTAAAATGGTTGT+GGG - chr1_3:4337279-4337298 Msa0098400:CDS 30.0%
! TGAATGTAATTGCGCATTTT+GGG - chr1_3:4337321-4337340 Msa0098400:CDS 30.0%
TTTCTCACAAACACTTATGT+GGG + chr1_3:4337367-4337386 None:intergenic 30.0%
ACATAAGTGTTTGTGAGAAA+CGG - chr1_3:4337367-4337386 Msa0098400:intron 30.0%
TTCCTTTCTATTGGGTATTA+GGG + chr1_3:4337526-4337545 None:intergenic 30.0%
TTTCCTTTCTATTGGGTATT+AGG + chr1_3:4337527-4337546 None:intergenic 30.0%
GCAATAGTTTCCTTTCTATT+GGG + chr1_3:4337534-4337553 None:intergenic 30.0%
AGCAATAGTTTCCTTTCTAT+TGG + chr1_3:4337535-4337554 None:intergenic 30.0%
TTGTTAGTTATTGGGCTTAT+AGG - chr1_3:4337578-4337597 Msa0098400:intron 30.0%
AAACTTTGTCTAACCGTTTA+AGG + chr1_3:4337732-4337751 None:intergenic 30.0%
TTTAAAGACTATAGCCAGTT+TGG + chr1_3:4337878-4337897 None:intergenic 30.0%
TTAAAATAGCACCTAATTGC+TGG - chr1_3:4337893-4337912 Msa0098400:CDS 30.0%
! TTCTCAATGTGACTTTTTAG+TGG - chr1_3:4337937-4337956 Msa0098400:CDS 30.0%
TTCATTCCATTCAGTTTCTA+TGG - chr1_3:4338064-4338083 Msa0098400:intron 30.0%
AAAACACCATAGAAACTGAA+TGG + chr1_3:4338073-4338092 None:intergenic 30.0%
!!! GACATTTTAATGGATTATCC+TGG - chr1_3:4338264-4338283 Msa0098400:CDS 30.0%
AGATAGATAACTGTTCTATC+TGG - chr1_3:4338498-4338517 Msa0098400:intron 30.0%
ATCTATCTTTCTTACTACCA+TGG + chr1_3:4338960-4338979 None:intergenic 30.0%
TAAGATAATAACTGCTTGTC+AGG - chr1_3:4339211-4339230 Msa0098400:intron 30.0%
! AATTTTTACACTAAGGACGA+CGG + chr1_3:4339327-4339346 None:intergenic 30.0%
! GATCCTCAATTTTTACACTA+AGG + chr1_3:4339334-4339353 None:intergenic 30.0%
! TTGTGTACTTGTTAACAAAG+GGG + chr1_3:4339426-4339445 None:intergenic 30.0%
!!! CATGTCTATTGTTTTAGATC+CGG + chr1_3:4339478-4339497 None:intergenic 30.0%
GTTTCTTGGTATATACTACA+AGG + chr1_3:4339536-4339555 None:intergenic 30.0%
GATAATACTTTCACGTTTCT+TGG + chr1_3:4339550-4339569 None:intergenic 30.0%
CAAGAAAGCAAATAATGAGT+TGG + chr1_3:4339596-4339615 None:intergenic 30.0%
AAAGCAATTCCAATTCAGTA+TGG + chr1_3:4339747-4339766 None:intergenic 30.0%
! TGTGTATTTCATGGATCTTT+TGG - chr1_3:4339885-4339904 Msa0098400:intron 30.0%
TGACAACAATTATTACCTGA+TGG + chr1_3:4339917-4339936 None:intergenic 30.0%
ATTGAACTCAACCGTTAAAT+TGG - chr1_3:4339965-4339984 Msa0098400:intron 30.0%
TAGATGGAGTTCCAATTTAA+CGG + chr1_3:4339979-4339998 None:intergenic 30.0%
! TGTTAGAGAAATTAGTTTCG+AGG + chr1_3:4340055-4340074 None:intergenic 30.0%
TAGTTCCTGCAATGAAAATT+TGG - chr1_3:4340124-4340143 Msa0098400:intron 30.0%
GAGCTTCAAGGTTATAATAA+TGG + chr1_3:4340161-4340180 None:intergenic 30.0%
GGAAAAACAATATACAACAG+AGG + chr1_3:4340189-4340208 None:intergenic 30.0%
AACTAGTTAGCAAATTGACA+TGG + chr1_3:4340224-4340243 None:intergenic 30.0%
TAATATATTCCAAGAGTTCC+TGG + chr1_3:4340350-4340369 None:intergenic 30.0%
GGAACTCTTGGAATATATTA+AGG - chr1_3:4340350-4340369 Msa0098400:intron 30.0%
ACTCTTGGAATATATTAAGG+AGG - chr1_3:4340353-4340372 Msa0098400:intron 30.0%
! TGTCTATTTTCAAAAGGCAA+AGG - chr1_3:4340585-4340604 Msa0098400:intron 30.0%
GAAAAGAAATGGATGCAATA+TGG - chr1_3:4340692-4340711 Msa0098400:intron 30.0%
TTAGACAGTATTAGCAATCT+TGG + chr1_3:4340730-4340749 None:intergenic 30.0%
CACTGTAAAGAAGAAAGAAA+AGG + chr1_3:4340844-4340863 None:intergenic 30.0%
GTAAGGTTCATATTCAAATG+AGG - chr1_3:4340937-4340956 Msa0098400:five_prime_UTR 30.0%
TGAAGTGATCAAAGAATACA+AGG + chr1_3:4340983-4341002 None:intergenic 30.0%
! CTTCAGAAAATTTAGAATGG+TGG - chr1_3:4340998-4341017 Msa0098400:five_prime_UTR 30.0%
! ATAAAGCTACTTTGTTGAGA+AGG - chr1_3:4336637-4336656 Msa0098400:three_prime_UTR 30.0%
TGAGAAACTTCTGTGAATTT+GGG + chr1_3:4336774-4336793 None:intergenic 30.0%
AAAGAAACTAGGGTTTAGTA+GGG + chr1_3:4336884-4336903 None:intergenic 30.0%
CAACACACAACATTGAAATT+AGG + chr1_3:4336912-4336931 None:intergenic 30.0%
CTAATGACCTAAATAAGGAA+CGG - chr1_3:4337118-4337137 Msa0098400:intron 30.0%
!! CATTTTTCCGTTCCTTATTT+AGG + chr1_3:4337128-4337147 None:intergenic 30.0%
!! TAAGATGGTTTTTCAGAAAC+TGG - chr1_3:4337148-4337167 Msa0098400:intron 30.0%
!! AAGATGGTTTTTCAGAAACT+GGG - chr1_3:4337149-4337168 Msa0098400:intron 30.0%
TTGTGAAGTAAAATGGTTGT+GGG - chr1_3:4337279-4337298 Msa0098400:CDS 30.0%
! TGAATGTAATTGCGCATTTT+GGG - chr1_3:4337321-4337340 Msa0098400:CDS 30.0%
TTTCTCACAAACACTTATGT+GGG + chr1_3:4337367-4337386 None:intergenic 30.0%
ACATAAGTGTTTGTGAGAAA+CGG - chr1_3:4337367-4337386 Msa0098400:intron 30.0%
TTCCTTTCTATTGGGTATTA+GGG + chr1_3:4337526-4337545 None:intergenic 30.0%
TTTCCTTTCTATTGGGTATT+AGG + chr1_3:4337527-4337546 None:intergenic 30.0%
GCAATAGTTTCCTTTCTATT+GGG + chr1_3:4337534-4337553 None:intergenic 30.0%
AGCAATAGTTTCCTTTCTAT+TGG + chr1_3:4337535-4337554 None:intergenic 30.0%
TTGTTAGTTATTGGGCTTAT+AGG - chr1_3:4337578-4337597 Msa0098400:intron 30.0%
AAACTTTGTCTAACCGTTTA+AGG + chr1_3:4337732-4337751 None:intergenic 30.0%
TTTAAAGACTATAGCCAGTT+TGG + chr1_3:4337878-4337897 None:intergenic 30.0%
TTAAAATAGCACCTAATTGC+TGG - chr1_3:4337893-4337912 Msa0098400:CDS 30.0%
! TTCTCAATGTGACTTTTTAG+TGG - chr1_3:4337937-4337956 Msa0098400:CDS 30.0%
TTCATTCCATTCAGTTTCTA+TGG - chr1_3:4338064-4338083 Msa0098400:intron 30.0%
AAAACACCATAGAAACTGAA+TGG + chr1_3:4338073-4338092 None:intergenic 30.0%
!!! GACATTTTAATGGATTATCC+TGG - chr1_3:4338264-4338283 Msa0098400:CDS 30.0%
AGATAGATAACTGTTCTATC+TGG - chr1_3:4338498-4338517 Msa0098400:intron 30.0%
ATCTATCTTTCTTACTACCA+TGG + chr1_3:4338960-4338979 None:intergenic 30.0%
TAAGATAATAACTGCTTGTC+AGG - chr1_3:4339211-4339230 Msa0098400:intron 30.0%
! AATTTTTACACTAAGGACGA+CGG + chr1_3:4339327-4339346 None:intergenic 30.0%
! GATCCTCAATTTTTACACTA+AGG + chr1_3:4339334-4339353 None:intergenic 30.0%
! TTGTGTACTTGTTAACAAAG+GGG + chr1_3:4339426-4339445 None:intergenic 30.0%
!!! CATGTCTATTGTTTTAGATC+CGG + chr1_3:4339478-4339497 None:intergenic 30.0%
GTTTCTTGGTATATACTACA+AGG + chr1_3:4339536-4339555 None:intergenic 30.0%
GATAATACTTTCACGTTTCT+TGG + chr1_3:4339550-4339569 None:intergenic 30.0%
CAAGAAAGCAAATAATGAGT+TGG + chr1_3:4339596-4339615 None:intergenic 30.0%
AAAGCAATTCCAATTCAGTA+TGG + chr1_3:4339747-4339766 None:intergenic 30.0%
! TGTGTATTTCATGGATCTTT+TGG - chr1_3:4339885-4339904 Msa0098400:intron 30.0%
TGACAACAATTATTACCTGA+TGG + chr1_3:4339917-4339936 None:intergenic 30.0%
ATTGAACTCAACCGTTAAAT+TGG - chr1_3:4339965-4339984 Msa0098400:intron 30.0%
TAGATGGAGTTCCAATTTAA+CGG + chr1_3:4339979-4339998 None:intergenic 30.0%
! TGTTAGAGAAATTAGTTTCG+AGG + chr1_3:4340055-4340074 None:intergenic 30.0%
TAGTTCCTGCAATGAAAATT+TGG - chr1_3:4340124-4340143 Msa0098400:intron 30.0%
GAGCTTCAAGGTTATAATAA+TGG + chr1_3:4340161-4340180 None:intergenic 30.0%
GGAAAAACAATATACAACAG+AGG + chr1_3:4340189-4340208 None:intergenic 30.0%
AACTAGTTAGCAAATTGACA+TGG + chr1_3:4340224-4340243 None:intergenic 30.0%
TAATATATTCCAAGAGTTCC+TGG + chr1_3:4340350-4340369 None:intergenic 30.0%
GGAACTCTTGGAATATATTA+AGG - chr1_3:4340350-4340369 Msa0098400:intron 30.0%
ACTCTTGGAATATATTAAGG+AGG - chr1_3:4340353-4340372 Msa0098400:intron 30.0%
! TGTCTATTTTCAAAAGGCAA+AGG - chr1_3:4340585-4340604 Msa0098400:intron 30.0%
GAAAAGAAATGGATGCAATA+TGG - chr1_3:4340692-4340711 Msa0098400:intron 30.0%
TTAGACAGTATTAGCAATCT+TGG + chr1_3:4340730-4340749 None:intergenic 30.0%
CACTGTAAAGAAGAAAGAAA+AGG + chr1_3:4340844-4340863 None:intergenic 30.0%
GTAAGGTTCATATTCAAATG+AGG - chr1_3:4340937-4340956 Msa0098400:five_prime_UTR 30.0%
TGAAGTGATCAAAGAATACA+AGG + chr1_3:4340983-4341002 None:intergenic 30.0%
! CTTCAGAAAATTTAGAATGG+TGG - chr1_3:4340998-4341017 Msa0098400:five_prime_UTR 30.0%
!! TATCGTGATTTTGGGAATTG+CGG + chr1_3:4336746-4336765 None:intergenic 35.0%
CAATTCCCAAAATCACGATA+TGG - chr1_3:4336746-4336765 Msa0098400:three_prime_UTR 35.0%
CTGAGAAACTTCTGTGAATT+TGG + chr1_3:4336775-4336794 None:intergenic 35.0%
GAAAGAAACTAGGGTTTAGT+AGG + chr1_3:4336885-4336904 None:intergenic 35.0%
TTAGGGTAGGAAAGAAACTA+GGG + chr1_3:4336894-4336913 None:intergenic 35.0%
ATTAGGGTAGGAAAGAAACT+AGG + chr1_3:4336895-4336914 None:intergenic 35.0%
CACAACATTGAAATTAGGGT+AGG + chr1_3:4336907-4336926 None:intergenic 35.0%
! AACGGTGTTTTACTCTTGAT+TGG - chr1_3:4337032-4337051 Msa0098400:CDS 35.0%
! CGTTCCTTATTTAGGTCATT+AGG + chr1_3:4337120-4337139 None:intergenic 35.0%
AGGAACGGAAAAATGTAAGA+TGG - chr1_3:4337133-4337152 Msa0098400:intron 35.0%
AAACTGGGTTTACTCTTGAT+TGG - chr1_3:4337164-4337183 Msa0098400:intron 35.0%
CTTGTGAAGTAAAATGGTTG+TGG - chr1_3:4337278-4337297 Msa0098400:CDS 35.0%
! GTGAATGTAATTGCGCATTT+TGG - chr1_3:4337320-4337339 Msa0098400:CDS 35.0%
GTTTCTCACAAACACTTATG+TGG + chr1_3:4337368-4337387 None:intergenic 35.0%
CATAAGTGTTTGTGAGAAAC+GGG - chr1_3:4337368-4337387 Msa0098400:intron 35.0%
ATAAGTGTTTGTGAGAAACG+GGG - chr1_3:4337369-4337388 Msa0098400:intron 35.0%
AACCCTAATACCCAATAGAA+AGG - chr1_3:4337521-4337540 Msa0098400:intron 35.0%
CTAGAAGCTAAATCCTAACT+GGG + chr1_3:4337647-4337666 None:intergenic 35.0%
!! AGGATTTAGCTTCTAGCTTA+TGG - chr1_3:4337651-4337670 Msa0098400:intron 35.0%
!! GGATTTAGCTTCTAGCTTAT+GGG - chr1_3:4337652-4337671 Msa0098400:intron 35.0%
TGATTCTTTGCCTATGAGAA+AGG - chr1_3:4337706-4337725 Msa0098400:intron 35.0%
AGAAAGAATCACCAGCAATT+AGG + chr1_3:4337907-4337926 None:intergenic 35.0%
TTAGGTGTATCTGCAAACAA+GGG + chr1_3:4338009-4338028 None:intergenic 35.0%
ATTAGGTGTATCTGCAAACA+AGG + chr1_3:4338010-4338029 None:intergenic 35.0%
!! CATGCTTTGAAGAACAAAAC+AGG + chr1_3:4338357-4338376 None:intergenic 35.0%
!! CTGTTTTGTTCTTCAAAGCA+TGG - chr1_3:4338355-4338374 Msa0098400:intron 35.0%
! TAACCTTTCTGTCTGGTTTA+AGG - chr1_3:4338390-4338409 Msa0098400:intron 35.0%
GGAGAATGAACAAAGAGAAA+GGG + chr1_3:4338588-4338607 None:intergenic 35.0%
AGGAGAATGAACAAAGAGAA+AGG + chr1_3:4338589-4338608 None:intergenic 35.0%
!! TACGGATTAGAAAACAATGC+AGG + chr1_3:4338609-4338628 None:intergenic 35.0%
! TGGGTAGTTTGCATCAAAAT+TGG + chr1_3:4338721-4338740 None:intergenic 35.0%
!! TTGTTTTGTTCCTCAAACCA+TGG - chr1_3:4338940-4338959 Msa0098400:intron 35.0%
TTTCTTACTACCATGGTTTG+AGG + chr1_3:4338953-4338972 None:intergenic 35.0%
CGTCCTTAGTGTAAAAATTG+AGG - chr1_3:4339328-4339347 Msa0098400:intron 35.0%
TAATCTCAGACTGTTGAATC+CGG - chr1_3:4339456-4339475 Msa0098400:intron 35.0%
AAGGCAATAGTTAAGTGATC+AGG + chr1_3:4339502-4339521 None:intergenic 35.0%
TGCTGAATTCCATACTGAAT+TGG - chr1_3:4339735-4339754 Msa0098400:intron 35.0%
!! TTTACTTCTGAAGTTGGACT+TGG - chr1_3:4340008-4340027 Msa0098400:intron 35.0%
TTGACATGGATGTGCAAATA+TGG + chr1_3:4340210-4340229 None:intergenic 35.0%
GGCTTATCAAGTAAAAGCAA+AGG + chr1_3:4340468-4340487 None:intergenic 35.0%
! CGGTTCTGTCTATTTTCAAA+AGG - chr1_3:4340579-4340598 Msa0098400:intron 35.0%
ACCAAACACTTAGTTATGCT+AGG - chr1_3:4340650-4340669 Msa0098400:intron 35.0%
CCAAACACTTAGTTATGCTA+GGG - chr1_3:4340651-4340670 Msa0098400:intron 35.0%
GAGGATTGTCTGAAAAGAAA+TGG - chr1_3:4340681-4340700 Msa0098400:intron 35.0%
!! TGTTTAGTTCTGATTCAGTG+TGG - chr1_3:4340756-4340775 Msa0098400:intron 35.0%
! AGAAAGAAAAGGGTACACAA+AGG + chr1_3:4340833-4340852 None:intergenic 35.0%
GACTACTATATCGTCAGAAT+TGG - chr1_3:4340889-4340908 Msa0098400:five_prime_UTR 35.0%
!! TATCGTGATTTTGGGAATTG+CGG + chr1_3:4336746-4336765 None:intergenic 35.0%
CAATTCCCAAAATCACGATA+TGG - chr1_3:4336746-4336765 Msa0098400:three_prime_UTR 35.0%
CTGAGAAACTTCTGTGAATT+TGG + chr1_3:4336775-4336794 None:intergenic 35.0%
GAAAGAAACTAGGGTTTAGT+AGG + chr1_3:4336885-4336904 None:intergenic 35.0%
TTAGGGTAGGAAAGAAACTA+GGG + chr1_3:4336894-4336913 None:intergenic 35.0%
ATTAGGGTAGGAAAGAAACT+AGG + chr1_3:4336895-4336914 None:intergenic 35.0%
CACAACATTGAAATTAGGGT+AGG + chr1_3:4336907-4336926 None:intergenic 35.0%
! AACGGTGTTTTACTCTTGAT+TGG - chr1_3:4337032-4337051 Msa0098400:CDS 35.0%
! CGTTCCTTATTTAGGTCATT+AGG + chr1_3:4337120-4337139 None:intergenic 35.0%
AGGAACGGAAAAATGTAAGA+TGG - chr1_3:4337133-4337152 Msa0098400:intron 35.0%
AAACTGGGTTTACTCTTGAT+TGG - chr1_3:4337164-4337183 Msa0098400:intron 35.0%
CTTGTGAAGTAAAATGGTTG+TGG - chr1_3:4337278-4337297 Msa0098400:CDS 35.0%
! GTGAATGTAATTGCGCATTT+TGG - chr1_3:4337320-4337339 Msa0098400:CDS 35.0%
GTTTCTCACAAACACTTATG+TGG + chr1_3:4337368-4337387 None:intergenic 35.0%
CATAAGTGTTTGTGAGAAAC+GGG - chr1_3:4337368-4337387 Msa0098400:intron 35.0%
ATAAGTGTTTGTGAGAAACG+GGG - chr1_3:4337369-4337388 Msa0098400:intron 35.0%
AACCCTAATACCCAATAGAA+AGG - chr1_3:4337521-4337540 Msa0098400:intron 35.0%
CTAGAAGCTAAATCCTAACT+GGG + chr1_3:4337647-4337666 None:intergenic 35.0%
!! AGGATTTAGCTTCTAGCTTA+TGG - chr1_3:4337651-4337670 Msa0098400:intron 35.0%
!! GGATTTAGCTTCTAGCTTAT+GGG - chr1_3:4337652-4337671 Msa0098400:intron 35.0%
TGATTCTTTGCCTATGAGAA+AGG - chr1_3:4337706-4337725 Msa0098400:intron 35.0%
AGAAAGAATCACCAGCAATT+AGG + chr1_3:4337907-4337926 None:intergenic 35.0%
TTAGGTGTATCTGCAAACAA+GGG + chr1_3:4338009-4338028 None:intergenic 35.0%
ATTAGGTGTATCTGCAAACA+AGG + chr1_3:4338010-4338029 None:intergenic 35.0%
!! CATGCTTTGAAGAACAAAAC+AGG + chr1_3:4338357-4338376 None:intergenic 35.0%
!! CTGTTTTGTTCTTCAAAGCA+TGG - chr1_3:4338355-4338374 Msa0098400:intron 35.0%
! TAACCTTTCTGTCTGGTTTA+AGG - chr1_3:4338390-4338409 Msa0098400:intron 35.0%
GGAGAATGAACAAAGAGAAA+GGG + chr1_3:4338588-4338607 None:intergenic 35.0%
AGGAGAATGAACAAAGAGAA+AGG + chr1_3:4338589-4338608 None:intergenic 35.0%
!! TACGGATTAGAAAACAATGC+AGG + chr1_3:4338609-4338628 None:intergenic 35.0%
! TGGGTAGTTTGCATCAAAAT+TGG + chr1_3:4338721-4338740 None:intergenic 35.0%
!! TTGTTTTGTTCCTCAAACCA+TGG - chr1_3:4338940-4338959 Msa0098400:intron 35.0%
TTTCTTACTACCATGGTTTG+AGG + chr1_3:4338953-4338972 None:intergenic 35.0%
CGTCCTTAGTGTAAAAATTG+AGG - chr1_3:4339328-4339347 Msa0098400:intron 35.0%
TAATCTCAGACTGTTGAATC+CGG - chr1_3:4339456-4339475 Msa0098400:intron 35.0%
AAGGCAATAGTTAAGTGATC+AGG + chr1_3:4339502-4339521 None:intergenic 35.0%
TGCTGAATTCCATACTGAAT+TGG - chr1_3:4339735-4339754 Msa0098400:intron 35.0%
!! TTTACTTCTGAAGTTGGACT+TGG - chr1_3:4340008-4340027 Msa0098400:intron 35.0%
TTGACATGGATGTGCAAATA+TGG + chr1_3:4340210-4340229 None:intergenic 35.0%
GGCTTATCAAGTAAAAGCAA+AGG + chr1_3:4340468-4340487 None:intergenic 35.0%
! CGGTTCTGTCTATTTTCAAA+AGG - chr1_3:4340579-4340598 Msa0098400:intron 35.0%
ACCAAACACTTAGTTATGCT+AGG - chr1_3:4340650-4340669 Msa0098400:intron 35.0%
CCAAACACTTAGTTATGCTA+GGG - chr1_3:4340651-4340670 Msa0098400:intron 35.0%
GAGGATTGTCTGAAAAGAAA+TGG - chr1_3:4340681-4340700 Msa0098400:intron 35.0%
!! TGTTTAGTTCTGATTCAGTG+TGG - chr1_3:4340756-4340775 Msa0098400:intron 35.0%
! AGAAAGAAAAGGGTACACAA+AGG + chr1_3:4340833-4340852 None:intergenic 35.0%
GACTACTATATCGTCAGAAT+TGG - chr1_3:4340889-4340908 Msa0098400:five_prime_UTR 35.0%
! TTGGGAATTGCGGTTTTCAA+AGG + chr1_3:4336736-4336755 None:intergenic 40.0%
! GGGATCCATATCGTGATTTT+GGG + chr1_3:4336754-4336773 None:intergenic 40.0%
! TGGGATCCATATCGTGATTT+TGG + chr1_3:4336755-4336774 None:intergenic 40.0%
TTAAGAGGGGTCGTTAGAAA+CGG - chr1_3:4337014-4337033 Msa0098400:CDS 40.0%
!! CTCTTGATTGGTTGTTTCTG+TGG - chr1_3:4337176-4337195 Msa0098400:intron 40.0%
TAAGTGTTTGTGAGAAACGG+GGG - chr1_3:4337370-4337389 Msa0098400:intron 40.0%
!! AGATTTTAGTGGCAGGTTGT+TGG - chr1_3:4337473-4337492 Msa0098400:intron 40.0%
!! GATTTTAGTGGCAGGTTGTT+GGG - chr1_3:4337474-4337493 Msa0098400:intron 40.0%
TGGTTTATACTGACCCAGTT+AGG - chr1_3:4337631-4337650 Msa0098400:intron 40.0%
GCTAGAAGCTAAATCCTAAC+TGG + chr1_3:4337648-4337667 None:intergenic 40.0%
CCTATGAGAAAGGCCTTAAA+CGG - chr1_3:4337716-4337735 Msa0098400:intron 40.0%
! GTCGAGAATTTTGTCCAAAC+TGG - chr1_3:4337861-4337880 Msa0098400:CDS 40.0%
! TAGTGGCATTTTTCACTTGC+AGG - chr1_3:4337954-4337973 Msa0098400:CDS 40.0%
!! ACTTGCAGGTGTTACTAACA+GGG - chr1_3:4337968-4337987 Msa0098400:intron 40.0%
! GTTAGCTCTTGAACTGCATT+AGG + chr1_3:4338027-4338046 None:intergenic 40.0%
TACAGGTAAGAAAACAACGC+AGG + chr1_3:4338119-4338138 None:intergenic 40.0%
TACGGGTAAGAAAACAATGC+AGG + chr1_3:4338167-4338186 None:intergenic 40.0%
GGATAGATAACCTTTCTGTC+TGG - chr1_3:4338383-4338402 Msa0098400:intron 40.0%
TTCATTCCAATCAGTTGCTC+TGG - chr1_3:4338555-4338574 Msa0098400:intron 40.0%
AAAAGACCAGAGCAACTGAT+TGG + chr1_3:4338564-4338583 None:intergenic 40.0%
!! GAAGTGTGTGTTTAGTTCTG+CGG + chr1_3:4338869-4338888 None:intergenic 40.0%
TTTGTCATGCAGCAAGACAA+AGG + chr1_3:4339021-4339040 None:intergenic 40.0%
TAACTGCTTGTCAGGTGAAT+AGG - chr1_3:4339219-4339238 Msa0098400:intron 40.0%
AACCTTACTACACTGATGCA+CGG - chr1_3:4339387-4339406 Msa0098400:intron 40.0%
! ACAGGTTGAGACCAAGTATT+GGG + chr1_3:4339690-4339709 None:intergenic 40.0%
! AACAGGTTGAGACCAAGTAT+TGG + chr1_3:4339691-4339710 None:intergenic 40.0%
TGAGACTTCTTGTGCAGAAT+AGG - chr1_3:4339710-4339729 Msa0098400:intron 40.0%
TTGGAGCAATCCTTTATGGA+AGG - chr1_3:4339811-4339830 Msa0098400:intron 40.0%
TGGAGCAATCCTTTATGGAA+GGG - chr1_3:4339812-4339831 Msa0098400:intron 40.0%
! ATCTTTTGGCAAAGACCATC+AGG - chr1_3:4339899-4339918 Msa0098400:intron 40.0%
AGTTCAATCATCAGGTAGGT+AGG + chr1_3:4339953-4339972 None:intergenic 40.0%
GTTGAGTTCAATCATCAGGT+AGG + chr1_3:4339957-4339976 None:intergenic 40.0%
AACGGTTGAGTTCAATCATC+AGG + chr1_3:4339961-4339980 None:intergenic 40.0%
! TTCGGCCAAATTTTCATTGC+AGG + chr1_3:4340132-4340151 None:intergenic 40.0%
AATGTCGTGCAAAGAGATTC+AGG + chr1_3:4340489-4340508 None:intergenic 40.0%
!! CACGACATTGTTTTGTTCTC+CGG - chr1_3:4340500-4340519 Msa0098400:intron 40.0%
CGTTCTTGATTTCCCATTCA+GGG + chr1_3:4340561-4340580 None:intergenic 40.0%
CCTGAATGGGAAATCAAGAA+CGG - chr1_3:4340559-4340578 Msa0098400:intron 40.0%
!! TGTTTGGTTGATGAGTTGCA+GGG + chr1_3:4340638-4340657 None:intergenic 40.0%
CCCTAGCATAACTAAGTGTT+TGG + chr1_3:4340654-4340673 None:intergenic 40.0%
ACTTAGTTATGCTAGGGAGT+TGG - chr1_3:4340657-4340676 Msa0098400:intron 40.0%
! TTGGGAATTGCGGTTTTCAA+AGG + chr1_3:4336736-4336755 None:intergenic 40.0%
! GGGATCCATATCGTGATTTT+GGG + chr1_3:4336754-4336773 None:intergenic 40.0%
! TGGGATCCATATCGTGATTT+TGG + chr1_3:4336755-4336774 None:intergenic 40.0%
TTAAGAGGGGTCGTTAGAAA+CGG - chr1_3:4337014-4337033 Msa0098400:CDS 40.0%
!! CTCTTGATTGGTTGTTTCTG+TGG - chr1_3:4337176-4337195 Msa0098400:intron 40.0%
TAAGTGTTTGTGAGAAACGG+GGG - chr1_3:4337370-4337389 Msa0098400:intron 40.0%
!! AGATTTTAGTGGCAGGTTGT+TGG - chr1_3:4337473-4337492 Msa0098400:intron 40.0%
!! GATTTTAGTGGCAGGTTGTT+GGG - chr1_3:4337474-4337493 Msa0098400:intron 40.0%
TGGTTTATACTGACCCAGTT+AGG - chr1_3:4337631-4337650 Msa0098400:intron 40.0%
GCTAGAAGCTAAATCCTAAC+TGG + chr1_3:4337648-4337667 None:intergenic 40.0%
CCTATGAGAAAGGCCTTAAA+CGG - chr1_3:4337716-4337735 Msa0098400:intron 40.0%
! GTCGAGAATTTTGTCCAAAC+TGG - chr1_3:4337861-4337880 Msa0098400:CDS 40.0%
! TAGTGGCATTTTTCACTTGC+AGG - chr1_3:4337954-4337973 Msa0098400:CDS 40.0%
!! ACTTGCAGGTGTTACTAACA+GGG - chr1_3:4337968-4337987 Msa0098400:intron 40.0%
! GTTAGCTCTTGAACTGCATT+AGG + chr1_3:4338027-4338046 None:intergenic 40.0%
TACAGGTAAGAAAACAACGC+AGG + chr1_3:4338119-4338138 None:intergenic 40.0%
TACGGGTAAGAAAACAATGC+AGG + chr1_3:4338167-4338186 None:intergenic 40.0%
GGATAGATAACCTTTCTGTC+TGG - chr1_3:4338383-4338402 Msa0098400:intron 40.0%
TTCATTCCAATCAGTTGCTC+TGG - chr1_3:4338555-4338574 Msa0098400:intron 40.0%
AAAAGACCAGAGCAACTGAT+TGG + chr1_3:4338564-4338583 None:intergenic 40.0%
!! GAAGTGTGTGTTTAGTTCTG+CGG + chr1_3:4338869-4338888 None:intergenic 40.0%
TTTGTCATGCAGCAAGACAA+AGG + chr1_3:4339021-4339040 None:intergenic 40.0%
TAACTGCTTGTCAGGTGAAT+AGG - chr1_3:4339219-4339238 Msa0098400:intron 40.0%
AACCTTACTACACTGATGCA+CGG - chr1_3:4339387-4339406 Msa0098400:intron 40.0%
! ACAGGTTGAGACCAAGTATT+GGG + chr1_3:4339690-4339709 None:intergenic 40.0%
! AACAGGTTGAGACCAAGTAT+TGG + chr1_3:4339691-4339710 None:intergenic 40.0%
TGAGACTTCTTGTGCAGAAT+AGG - chr1_3:4339710-4339729 Msa0098400:intron 40.0%
TTGGAGCAATCCTTTATGGA+AGG - chr1_3:4339811-4339830 Msa0098400:intron 40.0%
TGGAGCAATCCTTTATGGAA+GGG - chr1_3:4339812-4339831 Msa0098400:intron 40.0%
! ATCTTTTGGCAAAGACCATC+AGG - chr1_3:4339899-4339918 Msa0098400:intron 40.0%
AGTTCAATCATCAGGTAGGT+AGG + chr1_3:4339953-4339972 None:intergenic 40.0%
GTTGAGTTCAATCATCAGGT+AGG + chr1_3:4339957-4339976 None:intergenic 40.0%
AACGGTTGAGTTCAATCATC+AGG + chr1_3:4339961-4339980 None:intergenic 40.0%
! TTCGGCCAAATTTTCATTGC+AGG + chr1_3:4340132-4340151 None:intergenic 40.0%
AATGTCGTGCAAAGAGATTC+AGG + chr1_3:4340489-4340508 None:intergenic 40.0%
!! CACGACATTGTTTTGTTCTC+CGG - chr1_3:4340500-4340519 Msa0098400:intron 40.0%
CGTTCTTGATTTCCCATTCA+GGG + chr1_3:4340561-4340580 None:intergenic 40.0%
CCTGAATGGGAAATCAAGAA+CGG - chr1_3:4340559-4340578 Msa0098400:intron 40.0%
!! TGTTTGGTTGATGAGTTGCA+GGG + chr1_3:4340638-4340657 None:intergenic 40.0%
CCCTAGCATAACTAAGTGTT+TGG + chr1_3:4340654-4340673 None:intergenic 40.0%
ACTTAGTTATGCTAGGGAGT+TGG - chr1_3:4340657-4340676 Msa0098400:intron 40.0%
GTTAGAGTGTACCTTGAGCT+GGG + chr1_3:4336862-4336881 None:intergenic 45.0%
AACGGGGGTTTACTCTTGAT+TGG - chr1_3:4337385-4337404 Msa0098400:intron 45.0%
AGGTTGTTGGGTGGCAATTT+GGG - chr1_3:4337486-4337505 Msa0098400:intron 45.0%
GCAGCTTGAATTCATAGCTC+TGG - chr1_3:4337611-4337630 Msa0098400:intron 45.0%
! CCGTTTAAGGCCTTTCTCAT+AGG + chr1_3:4337719-4337738 None:intergenic 45.0%
!! CACTTGCAGGTGTTACTAAC+AGG - chr1_3:4337967-4337986 Msa0098400:intron 45.0%
TATCTGCAAACAAGGGTGGA+AGG + chr1_3:4338002-4338021 None:intergenic 45.0%
ATCACAAAGAGCTCATAGCC+AGG + chr1_3:4338285-4338304 None:intergenic 45.0%
TCCATACCTCCTGTCATAGT+TGG - chr1_3:4338323-4338342 Msa0098400:intron 45.0%
TCCAACTATGACAGGAGGTA+TGG + chr1_3:4338327-4338346 None:intergenic 45.0%
GATCCACTTCCAACTATGAC+AGG + chr1_3:4338335-4338354 None:intergenic 45.0%
GTTCTTCAAAGCATGGCAGT+AGG - chr1_3:4338362-4338381 Msa0098400:intron 45.0%
CCACCTTAAACCAGACAGAA+AGG + chr1_3:4338396-4338415 None:intergenic 45.0%
! CCTTTCTGTCTGGTTTAAGG+TGG - chr1_3:4338393-4338412 Msa0098400:intron 45.0%
ACTGTTCTATCTGGTTGTGC+TGG - chr1_3:4338507-4338526 Msa0098400:intron 45.0%
TACCGTGCATCAGTGTAGTA+AGG + chr1_3:4339392-4339411 None:intergenic 45.0%
TCTGCACAAGAAGTCTCAAC+AGG + chr1_3:4339708-4339727 None:intergenic 45.0%
ATTGCTTTCATCCACTGCTC+TGG - chr1_3:4339759-4339778 Msa0098400:intron 45.0%
TCCTTGTATTAAGCATGCCG+TGG - chr1_3:4339786-4339805 Msa0098400:intron 45.0%
TCCACGGCATGCTTAATACA+AGG + chr1_3:4339790-4339809 None:intergenic 45.0%
TATTAAGCATGCCGTGGAGT+TGG - chr1_3:4339792-4339811 Msa0098400:intron 45.0%
AAAGGATTGCTCCAACTCCA+CGG + chr1_3:4339806-4339825 None:intergenic 45.0%
GGAGTTGGAGCAATCCTTTA+TGG - chr1_3:4339807-4339826 Msa0098400:intron 45.0%
GGAGCAATCCTTTATGGAAG+GGG - chr1_3:4339813-4339832 Msa0098400:intron 45.0%
GTTGTATGCCCCTTCCATAA+AGG + chr1_3:4339824-4339843 None:intergenic 45.0%
ACGTTCAGAGATGAGATAGC+AGG - chr1_3:4340255-4340274 Msa0098400:intron 45.0%
! TTCCAAGAGTTCCTGGTCTT+TGG + chr1_3:4340343-4340362 None:intergenic 45.0%
!! ATTTCAGGAGCACCCTGAAT+GGG - chr1_3:4340546-4340565 Msa0098400:intron 45.0%
CCGTTCTTGATTTCCCATTC+AGG + chr1_3:4340562-4340581 None:intergenic 45.0%
!! AGGGAGGGTATTTCTTTGCA+AGG + chr1_3:4340619-4340638 None:intergenic 45.0%
!! GTGTTTGGTTGATGAGTTGC+AGG + chr1_3:4340639-4340658 None:intergenic 45.0%
! ATTTAGAATGGTGGTGCGCA+AGG - chr1_3:4341007-4341026 Msa0098400:five_prime_UTR 45.0%
GTTAGAGTGTACCTTGAGCT+GGG + chr1_3:4336862-4336881 None:intergenic 45.0%
AACGGGGGTTTACTCTTGAT+TGG - chr1_3:4337385-4337404 Msa0098400:intron 45.0%
AGGTTGTTGGGTGGCAATTT+GGG - chr1_3:4337486-4337505 Msa0098400:intron 45.0%
GCAGCTTGAATTCATAGCTC+TGG - chr1_3:4337611-4337630 Msa0098400:intron 45.0%
! CCGTTTAAGGCCTTTCTCAT+AGG + chr1_3:4337719-4337738 None:intergenic 45.0%
!! CACTTGCAGGTGTTACTAAC+AGG - chr1_3:4337967-4337986 Msa0098400:intron 45.0%
TATCTGCAAACAAGGGTGGA+AGG + chr1_3:4338002-4338021 None:intergenic 45.0%
ATCACAAAGAGCTCATAGCC+AGG + chr1_3:4338285-4338304 None:intergenic 45.0%
TCCATACCTCCTGTCATAGT+TGG - chr1_3:4338323-4338342 Msa0098400:intron 45.0%
TCCAACTATGACAGGAGGTA+TGG + chr1_3:4338327-4338346 None:intergenic 45.0%
GATCCACTTCCAACTATGAC+AGG + chr1_3:4338335-4338354 None:intergenic 45.0%
GTTCTTCAAAGCATGGCAGT+AGG - chr1_3:4338362-4338381 Msa0098400:intron 45.0%
CCACCTTAAACCAGACAGAA+AGG + chr1_3:4338396-4338415 None:intergenic 45.0%
! CCTTTCTGTCTGGTTTAAGG+TGG - chr1_3:4338393-4338412 Msa0098400:intron 45.0%
ACTGTTCTATCTGGTTGTGC+TGG - chr1_3:4338507-4338526 Msa0098400:intron 45.0%
TACCGTGCATCAGTGTAGTA+AGG + chr1_3:4339392-4339411 None:intergenic 45.0%
TCTGCACAAGAAGTCTCAAC+AGG + chr1_3:4339708-4339727 None:intergenic 45.0%
ATTGCTTTCATCCACTGCTC+TGG - chr1_3:4339759-4339778 Msa0098400:intron 45.0%
TCCTTGTATTAAGCATGCCG+TGG - chr1_3:4339786-4339805 Msa0098400:intron 45.0%
TCCACGGCATGCTTAATACA+AGG + chr1_3:4339790-4339809 None:intergenic 45.0%
TATTAAGCATGCCGTGGAGT+TGG - chr1_3:4339792-4339811 Msa0098400:intron 45.0%
AAAGGATTGCTCCAACTCCA+CGG + chr1_3:4339806-4339825 None:intergenic 45.0%
GGAGTTGGAGCAATCCTTTA+TGG - chr1_3:4339807-4339826 Msa0098400:intron 45.0%
GGAGCAATCCTTTATGGAAG+GGG - chr1_3:4339813-4339832 Msa0098400:intron 45.0%
GTTGTATGCCCCTTCCATAA+AGG + chr1_3:4339824-4339843 None:intergenic 45.0%
ACGTTCAGAGATGAGATAGC+AGG - chr1_3:4340255-4340274 Msa0098400:intron 45.0%
! TTCCAAGAGTTCCTGGTCTT+TGG + chr1_3:4340343-4340362 None:intergenic 45.0%
!! ATTTCAGGAGCACCCTGAAT+GGG - chr1_3:4340546-4340565 Msa0098400:intron 45.0%
CCGTTCTTGATTTCCCATTC+AGG + chr1_3:4340562-4340581 None:intergenic 45.0%
!! AGGGAGGGTATTTCTTTGCA+AGG + chr1_3:4340619-4340638 None:intergenic 45.0%
!! GTGTTTGGTTGATGAGTTGC+AGG + chr1_3:4340639-4340658 None:intergenic 45.0%
! ATTTAGAATGGTGGTGCGCA+AGG - chr1_3:4341007-4341026 Msa0098400:five_prime_UTR 45.0%
!! TTTATTAAAAAAAAAAATAC+GGG + chr1_3:4338184-4338203 None:intergenic 5.0%
!! TTTATTAAAAAAAAAAATAC+GGG + chr1_3:4338184-4338203 None:intergenic 5.0%
CTGGGAAAGGAGATTCGAAG+CGG + chr1_3:4336844-4336863 None:intergenic 50.0%
GAATCTCCTTTCCCAGCTCA+AGG - chr1_3:4336848-4336867 Msa0098400:three_prime_UTR 50.0%
AGTGTACCTTGAGCTGGGAA+AGG + chr1_3:4336857-4336876 None:intergenic 50.0%
GGTTAGAGTGTACCTTGAGC+TGG + chr1_3:4336863-4336882 None:intergenic 50.0%
TTTAGTGGCAGGTTGTTGGG+TGG - chr1_3:4337477-4337496 Msa0098400:intron 50.0%
CAGGTTGTTGGGTGGCAATT+TGG - chr1_3:4337485-4337504 Msa0098400:intron 50.0%
GGTGTATCTGCAAACAAGGG+TGG + chr1_3:4338006-4338025 None:intergenic 50.0%
CCACTTCCAACTATGACAGG+AGG + chr1_3:4338332-4338351 None:intergenic 50.0%
CCTCCTGTCATAGTTGGAAG+TGG - chr1_3:4338329-4338348 Msa0098400:intron 50.0%
TGGGTACTCCTGAGGAGATT+GGG + chr1_3:4339671-4339690 None:intergenic 50.0%
TTGGGTACTCCTGAGGAGAT+TGG + chr1_3:4339672-4339691 None:intergenic 50.0%
!! CCAAGTATTGGGTACTCCTG+AGG + chr1_3:4339679-4339698 None:intergenic 50.0%
!! CCTCAGGAGTACCCAATACT+TGG - chr1_3:4339676-4339695 Msa0098400:intron 50.0%
ACAAGGATTCTCCAGAGCAG+TGG + chr1_3:4339773-4339792 None:intergenic 50.0%
TCTGTCGAGCACTCAAGACA+CGG + chr1_3:4339846-4339865 None:intergenic 50.0%
GATAGCAGGATGCAGTGAGA+AGG - chr1_3:4340269-4340288 Msa0098400:intron 50.0%
! GTTGCTGTTCACCAAAGACC+AGG - chr1_3:4340329-4340348 Msa0098400:intron 50.0%
CACCAAAGACCAGGAACTCT+TGG - chr1_3:4340338-4340357 Msa0098400:intron 50.0%
!! GATTTCAGGAGCACCCTGAA+TGG - chr1_3:4340545-4340564 Msa0098400:intron 50.0%
!! TGGTTGATGAGTTGCAGGGA+GGG + chr1_3:4340634-4340653 None:intergenic 50.0%
!! TTGGTTGATGAGTTGCAGGG+AGG + chr1_3:4340635-4340654 None:intergenic 50.0%
GTTATGCTAGGGAGTTGGAG+AGG - chr1_3:4340662-4340681 Msa0098400:intron 50.0%
CTGGGAAAGGAGATTCGAAG+CGG + chr1_3:4336844-4336863 None:intergenic 50.0%
GAATCTCCTTTCCCAGCTCA+AGG - chr1_3:4336848-4336867 Msa0098400:three_prime_UTR 50.0%
AGTGTACCTTGAGCTGGGAA+AGG + chr1_3:4336857-4336876 None:intergenic 50.0%
GGTTAGAGTGTACCTTGAGC+TGG + chr1_3:4336863-4336882 None:intergenic 50.0%
TTTAGTGGCAGGTTGTTGGG+TGG - chr1_3:4337477-4337496 Msa0098400:intron 50.0%
CAGGTTGTTGGGTGGCAATT+TGG - chr1_3:4337485-4337504 Msa0098400:intron 50.0%
GGTGTATCTGCAAACAAGGG+TGG + chr1_3:4338006-4338025 None:intergenic 50.0%
CCACTTCCAACTATGACAGG+AGG + chr1_3:4338332-4338351 None:intergenic 50.0%
CCTCCTGTCATAGTTGGAAG+TGG - chr1_3:4338329-4338348 Msa0098400:intron 50.0%
TGGGTACTCCTGAGGAGATT+GGG + chr1_3:4339671-4339690 None:intergenic 50.0%
TTGGGTACTCCTGAGGAGAT+TGG + chr1_3:4339672-4339691 None:intergenic 50.0%
!! CCAAGTATTGGGTACTCCTG+AGG + chr1_3:4339679-4339698 None:intergenic 50.0%
!! CCTCAGGAGTACCCAATACT+TGG - chr1_3:4339676-4339695 Msa0098400:intron 50.0%
ACAAGGATTCTCCAGAGCAG+TGG + chr1_3:4339773-4339792 None:intergenic 50.0%
TCTGTCGAGCACTCAAGACA+CGG + chr1_3:4339846-4339865 None:intergenic 50.0%
GATAGCAGGATGCAGTGAGA+AGG - chr1_3:4340269-4340288 Msa0098400:intron 50.0%
! GTTGCTGTTCACCAAAGACC+AGG - chr1_3:4340329-4340348 Msa0098400:intron 50.0%
CACCAAAGACCAGGAACTCT+TGG - chr1_3:4340338-4340357 Msa0098400:intron 50.0%
!! GATTTCAGGAGCACCCTGAA+TGG - chr1_3:4340545-4340564 Msa0098400:intron 50.0%
!! TGGTTGATGAGTTGCAGGGA+GGG + chr1_3:4340634-4340653 None:intergenic 50.0%
!! TTGGTTGATGAGTTGCAGGG+AGG + chr1_3:4340635-4340654 None:intergenic 50.0%
GTTATGCTAGGGAGTTGGAG+AGG - chr1_3:4340662-4340681 Msa0098400:intron 50.0%
TCGTCTTCCCCAATCTCCTC+AGG - chr1_3:4339660-4339679 Msa0098400:intron 55.0%
GGGTACTCCTGAGGAGATTG+GGG + chr1_3:4339670-4339689 None:intergenic 55.0%
! ACAGAGGTGTGCGAGCTTCA+AGG + chr1_3:4340173-4340192 None:intergenic 55.0%
TCGTCTTCCCCAATCTCCTC+AGG - chr1_3:4339660-4339679 Msa0098400:intron 55.0%
GGGTACTCCTGAGGAGATTG+GGG + chr1_3:4339670-4339689 None:intergenic 55.0%
! ACAGAGGTGTGCGAGCTTCA+AGG + chr1_3:4340173-4340192 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4336604 4341033 4336604 ID=Msa0098400;Name=Msa0098400
chr1_3 mRNA 4336604 4341033 4336604 ID=Msa0098400-mRNA-1;Parent=Msa0098400;Name=Msa0098400-mRNA-1;_AED=0.04;_eAED=0.04;_QI=161|1|1|1|1|1|6|340|267
chr1_3 exon 4336604 4337084 4336604 ID=Msa0098400-mRNA-1:exon:1466;Parent=Msa0098400-mRNA-1
chr1_3 exon 4337263 4337374 4337263 ID=Msa0098400-mRNA-1:exon:1465;Parent=Msa0098400-mRNA-1
chr1_3 exon 4337717 4337980 4337717 ID=Msa0098400-mRNA-1:exon:1464;Parent=Msa0098400-mRNA-1
chr1_3 exon 4338229 4338331 4338229 ID=Msa0098400-mRNA-1:exon:1463;Parent=Msa0098400-mRNA-1
chr1_3 exon 4339583 4339661 4339583 ID=Msa0098400-mRNA-1:exon:1462;Parent=Msa0098400-mRNA-1
chr1_3 exon 4340768 4341033 4340768 ID=Msa0098400-mRNA-1:exon:1461;Parent=Msa0098400-mRNA-1
chr1_3 five_prime_UTR 4340873 4341033 4340873 ID=Msa0098400-mRNA-1:five_prime_utr;Parent=Msa0098400-mRNA-1
chr1_3 CDS 4340768 4340872 4340768 ID=Msa0098400-mRNA-1:cds;Parent=Msa0098400-mRNA-1
chr1_3 CDS 4339583 4339661 4339583 ID=Msa0098400-mRNA-1:cds;Parent=Msa0098400-mRNA-1
chr1_3 CDS 4338229 4338331 4338229 ID=Msa0098400-mRNA-1:cds;Parent=Msa0098400-mRNA-1
chr1_3 CDS 4337717 4337980 4337717 ID=Msa0098400-mRNA-1:cds;Parent=Msa0098400-mRNA-1
chr1_3 CDS 4337263 4337374 4337263 ID=Msa0098400-mRNA-1:cds;Parent=Msa0098400-mRNA-1
chr1_3 CDS 4336944 4337084 4336944 ID=Msa0098400-mRNA-1:cds;Parent=Msa0098400-mRNA-1
chr1_3 three_prime_UTR 4336604 4336943 4336604 ID=Msa0098400-mRNA-1:three_prime_utr;Parent=Msa0098400-mRNA-1
Gene Sequence

>Msa0098400

ATGGATCCCAAATTCACAGAAGTTTCTCAGTTGTTCGATCGATTCAAAGCTGCTTTTCTCAGAAACGACTTCGATTCCGCTTCGAATCTCCTTTCCCAGCTCAAGGTGTTACTAACAGGGTTCAGAAGCCTTCCACCCTTGTTTGCAGATACACCTAATGCAGTTCAAGAGCTAACTATTGCAAGGGATATATACGAACATGCCGTCGTCCTTAGTGTAAAAATTGAGGATCAAGATGCCTTTGAAAGAGATTTCTTTCAATTGAAACCTTACTACACTGATGCACGTAATCGTCTTCCCCAATCTCCTCAGGAGTACCCAATACTTGGTCTCAACCTGTTGAGACTTCTTGTGCAGAATAGGATTGCTGAATTCCATACTGAATTGGAATTGCTTTCATCCACTGCTCTGGAGAATCCTTGTATTAAGCATGCCGTGGAGTTGGAGCAATCCTTTATGGAAGGGGCATACAACCGTGTCTTGAGTGCTCGACAGACAGTACCACATGAAACATATGTGTATTTCATGGATCTTTTGGCAAAGACCATCAGAGATGAGATAGCAGGATGCAGTGAGAAGGCATATGACTATCTTTCAATTAATGATGCTAAGCAGATGTTGCTGTTCACCAAAGACCAGGAACTCTTGGAATATATTAAGGAGGAGCACCCTGAATGGGAAATCAAGAACGGTTCTGTCTATTTTCAAAAGGCAAAGGATTCTGCACCTTGCAAAGAAATACCCTCCCTGCAACTCATCAACCAAACACTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGA
Protein sequence

>Msa0098400

MDPKFTEVSQLFDRFKAAFLRNDFDSASNLLSQLKVLLTGFRSLPPLFADTPNAVQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYVYFMDLLAKTIRDEIAGCSEKAYDYLSINDAKQMLLFTKDQELLEYIKEEHPEWEIKNGSVYFQKAKDSAPCKEIPSLQLINQTLSYARELERIV*