Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099720 | sp|Q93VM8|COPT5_ARATH | 55.102 | 147 | 61 | 3 | 69 | 211 | 1 | 146 | 6.19e-48 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099720 | G7I8Y2 | 95.105 | 143 | 6 | 1 | 69 | 211 | 1 | 142 | 4.04e-94 | 280 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0099720 | 0.803655 | 3.143215e-49 | -8.615850e-47 |
| Msa0005360 | Msa0099720 | 0.969616 | 2.192556e-130 | -8.615850e-47 |
| Msa0017120 | Msa0099720 | 0.804584 | 2.014193e-49 | -8.615850e-47 |
| Msa0053880 | Msa0099720 | 0.984459 | 1.269640e-160 | -8.615850e-47 |
| Msa0099720 | Msa0146470 | 0.802562 | 5.289363e-49 | -8.615850e-47 |
| Msa0099720 | Msa0185390 | 0.808392 | 3.168444e-50 | -8.615850e-47 |
| Msa0099720 | Msa0306130 | 0.809018 | 2.327598e-50 | -8.615850e-47 |
| Msa0099720 | Msa0421800 | 0.812516 | 4.077243e-51 | -8.615850e-47 |
| Msa0099720 | Msa0467800 | 0.815308 | 9.881987e-52 | -8.615850e-47 |
| Msa0099720 | Msa0467880 | 0.810501 | 1.116902e-50 | -8.615850e-47 |
| Msa0099720 | Msa0514260 | 0.808254 | 3.389209e-50 | -8.615850e-47 |
| Msa0099720 | Msa0547050 | 0.806849 | 6.736987e-50 | -8.615850e-47 |
| Msa0099720 | Msa0560180 | 0.818707 | 1.703121e-52 | -8.615850e-47 |
| Msa0099720 | Msa0638690 | 0.809164 | 2.165984e-50 | -8.615850e-47 |
| Msa0099720 | Msa0642650 | 0.800904 | 1.158140e-48 | -8.615850e-47 |
| Msa0099720 | Msa0662850 | 0.808613 | 2.842473e-50 | -8.615850e-47 |
| Msa0099720 | Msa0681890 | 0.808927 | 2.434868e-50 | -8.615850e-47 |
| Msa0099720 | Msa0686610 | 0.800163 | 1.639284e-48 | -8.615850e-47 |
| Msa0099720 | Msa0739570 | 0.818192 | 2.228039e-52 | -8.615850e-47 |
| Msa0099720 | Msa0782330 | 0.805558 | 1.259924e-49 | -8.615850e-47 |
| Msa0099720 | Msa0860270 | 0.804340 | 2.264577e-49 | -8.615850e-47 |
| Msa0099720 | Msa0958020 | 0.821290 | 4.368538e-53 | -8.615850e-47 |
| Msa0099720 | Msa0971860 | 0.800557 | 1.363087e-48 | -8.615850e-47 |
| Msa0099720 | Msa0992570 | 0.807254 | 5.529324e-50 | -8.615850e-47 |
| Msa0099720 | Msa1024580 | 0.802286 | 6.028963e-49 | -8.615850e-47 |
| Msa0099720 | Msa1030280 | 0.804653 | 1.948345e-49 | -8.615850e-47 |
| Msa0099720 | Msa1123340 | 0.805829 | 1.105292e-49 | -8.615850e-47 |
| Msa0099720 | Msa1215210 | 0.802166 | 6.382510e-49 | -8.615850e-47 |
| Msa0099720 | Msa1381130 | 0.801737 | 7.819631e-49 | -8.615850e-47 |
| Msa0099720 | Msa1422750 | 0.803761 | 2.986996e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099720 | MtrunA17_Chr1g0150721 | 95.105 | 143 | 6 | 1 | 69 | 211 | 1 | 142 | 7.78e-98 | 280 |
| Msa0099720 | MtrunA17_Chr3g0136431 | 59.060 | 149 | 49 | 4 | 69 | 211 | 1 | 143 | 1.97e-54 | 170 |
| Msa0099720 | MtrunA17_Chr4g0008841 | 31.034 | 145 | 71 | 4 | 70 | 206 | 13 | 136 | 9.05e-18 | 76.3 |
| Msa0099720 | MtrunA17_Chr7g0240831 | 31.298 | 131 | 69 | 2 | 70 | 200 | 22 | 131 | 9.31e-16 | 71.2 |
| Msa0099720 | MtrunA17_Chr7g0240841 | 31.298 | 131 | 69 | 2 | 70 | 200 | 22 | 131 | 9.31e-16 | 71.2 |
| Msa0099720 | MtrunA17_Chr7g0240861 | 30.000 | 140 | 76 | 4 | 70 | 207 | 27 | 146 | 1.30e-14 | 68.6 |
| Msa0099720 | MtrunA17_Chr4g0032581 | 29.921 | 127 | 67 | 3 | 73 | 199 | 35 | 139 | 2.56e-14 | 67.8 |
| Msa0099720 | MtrunA17_Chr3g0077241 | 50.746 | 67 | 31 | 2 | 1 | 66 | 1 | 66 | 2.92e-14 | 66.6 |
| Msa0099720 | MtrunA17_Chr4g0032571 | 28.455 | 123 | 66 | 2 | 69 | 191 | 27 | 127 | 2.97e-13 | 64.7 |
| Msa0099720 | MtrunA17_Chr4g0032291 | 31.579 | 133 | 66 | 4 | 73 | 201 | 46 | 157 | 3.48e-13 | 65.1 |
| Msa0099720 | MtrunA17_Chr1g0202341 | 50.000 | 66 | 32 | 1 | 1 | 66 | 14 | 78 | 3.08e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099720 | AT5G20650.1 | 55.102 | 147 | 61 | 3 | 69 | 211 | 1 | 146 | 6.29e-49 | 157 |
| Msa0099720 | AT2G26975.1 | 35.659 | 129 | 61 | 3 | 69 | 196 | 24 | 131 | 2.87e-20 | 83.6 |
| Msa0099720 | AT5G59040.1 | 34.375 | 128 | 63 | 2 | 69 | 196 | 29 | 135 | 5.54e-17 | 75.1 |
| Msa0099720 | AT2G37925.1 | 30.769 | 130 | 72 | 2 | 67 | 196 | 27 | 138 | 3.04e-14 | 67.8 |
| Msa0099720 | AT5G59030.1 | 27.778 | 144 | 80 | 3 | 73 | 210 | 45 | 170 | 2.44e-13 | 65.9 |
| Msa0099720 | AT3G46900.1 | 27.273 | 143 | 78 | 4 | 74 | 210 | 34 | 156 | 7.62e-13 | 64.3 |
Find 50 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACATTCTACCAATATT+TGG | 0.138215 | 1_3:-5926841 | Msa0099720:CDS |
| AATGGTAGTTCGTTATTTAT+AGG | 0.193209 | 1_3:+5928859 | None:intergenic |
| GAGATTCGGACTCCTCTTCT+TGG | 0.249119 | 1_3:-5926756 | Msa0099720:CDS |
| ACCAATATTTGGAAAATATT+CGG | 0.254322 | 1_3:-5926830 | Msa0099720:CDS |
| TCCTCTTCTTGGGTTGAATA+AGG | 0.262656 | 1_3:-5926745 | Msa0099720:CDS |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.274189 | 1_3:+5928828 | None:intergenic |
| TGACACTCTTATTTGATTCA+TGG | 0.286816 | 1_3:-5926917 | Msa0099720:CDS |
| TGATGCACATGACATTATAT+TGG | 0.315744 | 1_3:-5926950 | Msa0099720:CDS |
| GATGCACATGACATTATATT+GGG | 0.333053 | 1_3:-5926949 | Msa0099720:CDS |
| CGTTTGGTTACTTCTTGTTT+AGG | 0.336421 | 1_3:-5926599 | Msa0099720:CDS |
| ATTCATGGAAAACCAATTCA+TGG | 0.342364 | 1_3:-5926902 | Msa0099720:CDS |
| TTGGCTATAATGTCGTTTAA+TGG | 0.343696 | 1_3:-5926654 | Msa0099720:CDS |
| ATGTCAAGAGCAGCAGTTTC+AGG | 0.356702 | 1_3:+5928886 | None:intergenic |
| TTTGGTGTGAATTCTGCTAT+TGG | 0.364233 | 1_3:-5926690 | Msa0099720:CDS |
| ATTGTGGTTGGTTTAACGTT+TGG | 0.388729 | 1_3:-5926615 | Msa0099720:CDS |
| TAGATAACTCGTCCATGAAT+TGG | 0.393378 | 1_3:+5926890 | None:intergenic |
| AGATTCGGACTCCTCTTCTT+GGG | 0.397569 | 1_3:-5926755 | Msa0099720:CDS |
| TTGGTGTGAATTCTGCTATT+GGG | 0.404245 | 1_3:-5926689 | Msa0099720:CDS |
| ATTTGGAAAATATTCGGATT+CGG | 0.414816 | 1_3:-5926824 | Msa0099720:CDS |
| AGTCGCCGGTGCCGGAGATT+CGG | 0.431491 | 1_3:-5926770 | Msa0099720:CDS |
| TATTGGGTATTTGTTGATGT+TGG | 0.437573 | 1_3:-5926673 | Msa0099720:CDS |
| GAGGAACAAGGTTGTTGAAT+CGG | 0.457237 | 1_3:-5926718 | Msa0099720:CDS |
| AATGTCATGTGCATCATCTT+CGG | 0.473949 | 1_3:+5926957 | None:intergenic |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 1_3:-5928827 | Msa0099720:CDS |
| AGGCAAGGAATCACTACAAA+AGG | 0.478706 | 1_3:-5928786 | Msa0099720:intron |
| TTGGGTTGAATAAGGTTTCG+AGG | 0.486516 | 1_3:-5926737 | Msa0099720:CDS |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 1_3:+5928829 | None:intergenic |
| AGAAGAGGAGTCCGAATCTC+CGG | 0.488903 | 1_3:+5926759 | None:intergenic |
| TGTGAACTCCATTCCTTCAA+AGG | 0.507742 | 1_3:+5928819 | None:intergenic |
| GAGGACGCAGTCGCCGGTGC+CGG | 0.509370 | 1_3:-5926778 | Msa0099720:CDS |
| GTGAACTCCATTCCTTCAAA+GGG | 0.518109 | 1_3:+5928820 | None:intergenic |
| TGAGGGGAGGACGCAGTCGC+CGG | 0.519658 | 1_3:-5926784 | Msa0099720:CDS |
| GTGATTCCTTGCCTCTTCGA+TGG | 0.520594 | 1_3:+5928795 | None:intergenic |
| ACCTTATTCAACCCAAGAAG+AGG | 0.545808 | 1_3:+5926744 | None:intergenic |
| GGAGTCCGAATCTCCGGCAC+CGG | 0.550760 | 1_3:+5926765 | None:intergenic |
| TCAGAGTGAAGAAGAGGCTG+CGG | 0.552122 | 1_3:-5926574 | Msa0099720:CDS |
| TGAAACTGCTGCTCTTGACA+TGG | 0.571525 | 1_3:-5928884 | Msa0099720:CDS |
| TAGGAGTCAGAGTGAAGAAG+AGG | 0.579273 | 1_3:-5926580 | Msa0099720:CDS |
| CACAAACTAAGCACATGCAC+AGG | 0.579857 | 1_3:+5926536 | None:intergenic |
| GAATAAGGTTTCGAGGAACA+AGG | 0.583225 | 1_3:-5926730 | Msa0099720:CDS |
| GCTATAATGTCGTTTAATGG+TGG | 0.610087 | 1_3:-5926651 | Msa0099720:CDS |
| TACATCATCAGAACAAGCCA+TGG | 0.620956 | 1_3:+5928909 | None:intergenic |
| TCACATCCATCGAAGAGGCA+AGG | 0.624553 | 1_3:-5928801 | Msa0099720:CDS |
| TCCTTCAAAGGGCTCTAAGG+GGG | 0.640867 | 1_3:+5928831 | None:intergenic |
| ATCATCAGAACAAGCCATGG+TGG | 0.649034 | 1_3:+5928912 | None:intergenic |
| CAGATTAAAGATGACAGATG+TGG | 0.651464 | 1_3:-5928944 | None:intergenic |
| ATGCACATGACATTATATTG+GGG | 0.668922 | 1_3:-5926948 | Msa0099720:CDS |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.673359 | 1_3:+5928830 | None:intergenic |
| GGAGTTCACATCCATCGAAG+AGG | 0.673976 | 1_3:-5928806 | Msa0099720:CDS |
| TGTGGATGAAGATTCCACCA+TGG | 0.737062 | 1_3:-5928926 | Msa0099720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr1_3:5927858-5927877 | Msa0099720:intron | 10.0% |
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr1_3:5927858-5927877 | Msa0099720:intron | 10.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | - | chr1_3:5926899-5926918 | Msa0099720:CDS | 15.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | - | chr1_3:5926899-5926918 | Msa0099720:CDS | 15.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | + | chr1_3:5927203-5927222 | None:intergenic | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | - | chr1_3:5927267-5927286 | Msa0099720:intron | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | - | chr1_3:5927304-5927323 | Msa0099720:intron | 20.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | + | chr1_3:5927349-5927368 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | - | chr1_3:5927578-5927597 | Msa0099720:intron | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | - | chr1_3:5928050-5928069 | Msa0099720:intron | 20.0% |
| !! | TAGATTAATTCAAAGTTTCA+AGG | + | chr1_3:5928218-5928237 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTTGATGTATC+TGG | + | chr1_3:5928254-5928273 | None:intergenic | 20.0% |
| !! | AGATACATCAACTAAAAAAA+AGG | - | chr1_3:5928253-5928272 | Msa0099720:intron | 20.0% |
| !!! | TATATATGTGTCTGTTTTTT+CGG | + | chr1_3:5928364-5928383 | None:intergenic | 20.0% |
| !! | ACCAATATTTGGAAAATATT+CGG | - | chr1_3:5928646-5928665 | Msa0099720:intron | 20.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | + | chr1_3:5927203-5927222 | None:intergenic | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | - | chr1_3:5927267-5927286 | Msa0099720:intron | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | - | chr1_3:5927304-5927323 | Msa0099720:intron | 20.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | + | chr1_3:5927349-5927368 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | - | chr1_3:5927578-5927597 | Msa0099720:intron | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | - | chr1_3:5928050-5928069 | Msa0099720:intron | 20.0% |
| !! | TAGATTAATTCAAAGTTTCA+AGG | + | chr1_3:5928218-5928237 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTTGATGTATC+TGG | + | chr1_3:5928254-5928273 | None:intergenic | 20.0% |
| !! | AGATACATCAACTAAAAAAA+AGG | - | chr1_3:5928253-5928272 | Msa0099720:intron | 20.0% |
| !!! | TATATATGTGTCTGTTTTTT+CGG | + | chr1_3:5928364-5928383 | None:intergenic | 20.0% |
| !! | ACCAATATTTGGAAAATATT+CGG | - | chr1_3:5928646-5928665 | Msa0099720:intron | 20.0% |
| ! | AATGGTAGTTCGTTATTTAT+AGG | + | chr1_3:5926620-5926639 | None:intergenic | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr1_3:5926787-5926806 | Msa0099720:CDS | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | - | chr1_3:5926903-5926922 | Msa0099720:CDS | 25.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | - | chr1_3:5926904-5926923 | Msa0099720:CDS | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | + | chr1_3:5926952-5926971 | None:intergenic | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | - | chr1_3:5927069-5927088 | Msa0099720:intron | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | - | chr1_3:5927157-5927176 | Msa0099720:intron | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr1_3:5927234-5927253 | Msa0099720:intron | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | - | chr1_3:5927266-5927285 | Msa0099720:intron | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | - | chr1_3:5927312-5927331 | Msa0099720:intron | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | - | chr1_3:5927406-5927425 | Msa0099720:intron | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | - | chr1_3:5927449-5927468 | Msa0099720:intron | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | + | chr1_3:5927574-5927593 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | + | chr1_3:5927701-5927720 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | - | chr1_3:5927701-5927720 | Msa0099720:intron | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | - | chr1_3:5927702-5927721 | Msa0099720:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | - | chr1_3:5927725-5927744 | Msa0099720:intron | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | + | chr1_3:5927848-5927867 | None:intergenic | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | + | chr1_3:5927849-5927868 | None:intergenic | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | - | chr1_3:5928028-5928047 | Msa0099720:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | - | chr1_3:5928063-5928082 | Msa0099720:intron | 25.0% |
| !! | CTCAAATATTCGTACATTTT+CGG | - | chr1_3:5928088-5928107 | Msa0099720:intron | 25.0% |
| ! | AATGGTTAAAACATTTCATG+TGG | + | chr1_3:5928177-5928196 | None:intergenic | 25.0% |
| ! | AAAGTTTCAAGGTTATGTAA+GGG | + | chr1_3:5928207-5928226 | None:intergenic | 25.0% |
| ! | AATTAATCTAACTGTAACAC+AGG | - | chr1_3:5928228-5928247 | Msa0099720:intron | 25.0% |
| !!! | AGGTTGTTTTGAAAATTTCA+AGG | + | chr1_3:5928451-5928470 | None:intergenic | 25.0% |
| !! | TCCGAATATTTTCCAAATAT+TGG | + | chr1_3:5928650-5928669 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATATTCGGATT+CGG | - | chr1_3:5928652-5928671 | Msa0099720:intron | 25.0% |
| ! | AATGGTAGTTCGTTATTTAT+AGG | + | chr1_3:5926620-5926639 | None:intergenic | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr1_3:5926787-5926806 | Msa0099720:CDS | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | - | chr1_3:5926903-5926922 | Msa0099720:CDS | 25.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | - | chr1_3:5926904-5926923 | Msa0099720:CDS | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | + | chr1_3:5926952-5926971 | None:intergenic | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | - | chr1_3:5927069-5927088 | Msa0099720:intron | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | - | chr1_3:5927157-5927176 | Msa0099720:intron | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr1_3:5927234-5927253 | Msa0099720:intron | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | - | chr1_3:5927266-5927285 | Msa0099720:intron | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | - | chr1_3:5927312-5927331 | Msa0099720:intron | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | - | chr1_3:5927406-5927425 | Msa0099720:intron | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | - | chr1_3:5927449-5927468 | Msa0099720:intron | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | + | chr1_3:5927574-5927593 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | + | chr1_3:5927701-5927720 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | - | chr1_3:5927701-5927720 | Msa0099720:intron | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | - | chr1_3:5927702-5927721 | Msa0099720:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | - | chr1_3:5927725-5927744 | Msa0099720:intron | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | + | chr1_3:5927848-5927867 | None:intergenic | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | + | chr1_3:5927849-5927868 | None:intergenic | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | - | chr1_3:5928028-5928047 | Msa0099720:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | - | chr1_3:5928063-5928082 | Msa0099720:intron | 25.0% |
| !! | CTCAAATATTCGTACATTTT+CGG | - | chr1_3:5928088-5928107 | Msa0099720:intron | 25.0% |
| ! | AATGGTTAAAACATTTCATG+TGG | + | chr1_3:5928177-5928196 | None:intergenic | 25.0% |
| ! | AAAGTTTCAAGGTTATGTAA+GGG | + | chr1_3:5928207-5928226 | None:intergenic | 25.0% |
| ! | AATTAATCTAACTGTAACAC+AGG | - | chr1_3:5928228-5928247 | Msa0099720:intron | 25.0% |
| !!! | AGGTTGTTTTGAAAATTTCA+AGG | + | chr1_3:5928451-5928470 | None:intergenic | 25.0% |
| !! | TCCGAATATTTTCCAAATAT+TGG | + | chr1_3:5928650-5928669 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATATTCGGATT+CGG | - | chr1_3:5928652-5928671 | Msa0099720:intron | 25.0% |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr1_3:5926751-5926770 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr1_3:5926752-5926771 | Msa0099720:CDS | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr1_3:5926792-5926811 | Msa0099720:CDS | 30.0% | |
| ! | CGAAGAAATTGACAACTTTT+AGG | + | chr1_3:5926974-5926993 | None:intergenic | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | + | chr1_3:5927064-5927083 | None:intergenic | 30.0% |
| AATTGTCAATTGAAGAATCC+TGG | - | chr1_3:5927211-5927230 | Msa0099720:intron | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | - | chr1_3:5927212-5927231 | Msa0099720:intron | 30.0% | |
| !!! | TATTCTTTTTGGTTGTGCTT+TGG | - | chr1_3:5927417-5927436 | Msa0099720:intron | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | + | chr1_3:5927514-5927533 | None:intergenic | 30.0% |
| GAAGCAATGATAGATACATA+TGG | - | chr1_3:5927724-5927743 | Msa0099720:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | - | chr1_3:5927999-5928018 | Msa0099720:intron | 30.0% | |
| CAAAGTTTCAAGGTTATGTA+AGG | + | chr1_3:5928208-5928227 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCCGATCTATGT+CGG | + | chr1_3:5928485-5928504 | None:intergenic | 30.0% |
| CATCATCTTCGGAAAAATTA+AGG | + | chr1_3:5928511-5928530 | None:intergenic | 30.0% | |
| TGATGCACATGACATTATAT+TGG | - | chr1_3:5928526-5928545 | Msa0099720:intron | 30.0% | |
| GATGCACATGACATTATATT+GGG | - | chr1_3:5928527-5928546 | Msa0099720:intron | 30.0% | |
| ATGCACATGACATTATATTG+GGG | - | chr1_3:5928528-5928547 | Msa0099720:intron | 30.0% | |
| ! | TGACACTCTTATTTGATTCA+TGG | - | chr1_3:5928559-5928578 | Msa0099720:intron | 30.0% |
| ATTCATGGAAAACCAATTCA+TGG | - | chr1_3:5928574-5928593 | Msa0099720:intron | 30.0% | |
| TGCAACATTCTACCAATATT+TGG | - | chr1_3:5928635-5928654 | Msa0099720:intron | 30.0% | |
| !!! | GTTGTTGAATCGGTTTTATT+TGG | - | chr1_3:5928768-5928787 | Msa0099720:intron | 30.0% |
| ! | TATTGGGTATTTGTTGATGT+TGG | - | chr1_3:5928803-5928822 | Msa0099720:CDS | 30.0% |
| ! | TTGGCTATAATGTCGTTTAA+TGG | - | chr1_3:5928822-5928841 | Msa0099720:CDS | 30.0% |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr1_3:5926751-5926770 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr1_3:5926752-5926771 | Msa0099720:CDS | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr1_3:5926792-5926811 | Msa0099720:CDS | 30.0% | |
| ! | CGAAGAAATTGACAACTTTT+AGG | + | chr1_3:5926974-5926993 | None:intergenic | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | + | chr1_3:5927064-5927083 | None:intergenic | 30.0% |
| AATTGTCAATTGAAGAATCC+TGG | - | chr1_3:5927211-5927230 | Msa0099720:intron | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | - | chr1_3:5927212-5927231 | Msa0099720:intron | 30.0% | |
| !!! | TATTCTTTTTGGTTGTGCTT+TGG | - | chr1_3:5927417-5927436 | Msa0099720:intron | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | + | chr1_3:5927514-5927533 | None:intergenic | 30.0% |
| GAAGCAATGATAGATACATA+TGG | - | chr1_3:5927724-5927743 | Msa0099720:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | - | chr1_3:5927999-5928018 | Msa0099720:intron | 30.0% | |
| CAAAGTTTCAAGGTTATGTA+AGG | + | chr1_3:5928208-5928227 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCCGATCTATGT+CGG | + | chr1_3:5928485-5928504 | None:intergenic | 30.0% |
| CATCATCTTCGGAAAAATTA+AGG | + | chr1_3:5928511-5928530 | None:intergenic | 30.0% | |
| TGATGCACATGACATTATAT+TGG | - | chr1_3:5928526-5928545 | Msa0099720:intron | 30.0% | |
| GATGCACATGACATTATATT+GGG | - | chr1_3:5928527-5928546 | Msa0099720:intron | 30.0% | |
| ATGCACATGACATTATATTG+GGG | - | chr1_3:5928528-5928547 | Msa0099720:intron | 30.0% | |
| ! | TGACACTCTTATTTGATTCA+TGG | - | chr1_3:5928559-5928578 | Msa0099720:intron | 30.0% |
| ATTCATGGAAAACCAATTCA+TGG | - | chr1_3:5928574-5928593 | Msa0099720:intron | 30.0% | |
| TGCAACATTCTACCAATATT+TGG | - | chr1_3:5928635-5928654 | Msa0099720:intron | 30.0% | |
| !!! | GTTGTTGAATCGGTTTTATT+TGG | - | chr1_3:5928768-5928787 | Msa0099720:intron | 30.0% |
| ! | TATTGGGTATTTGTTGATGT+TGG | - | chr1_3:5928803-5928822 | Msa0099720:CDS | 30.0% |
| ! | TTGGCTATAATGTCGTTTAA+TGG | - | chr1_3:5928822-5928841 | Msa0099720:CDS | 30.0% |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr1_3:5926707-5926726 | Msa0099720:CDS | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | - | chr1_3:5926725-5926744 | Msa0099720:CDS | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | - | chr1_3:5926764-5926783 | Msa0099720:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr1_3:5926791-5926810 | Msa0099720:CDS | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr1_3:5926798-5926817 | Msa0099720:CDS | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | - | chr1_3:5926856-5926875 | Msa0099720:CDS | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | + | chr1_3:5927232-5927251 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr1_3:5927278-5927297 | Msa0099720:intron | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | - | chr1_3:5927288-5927307 | Msa0099720:intron | 35.0% |
| TGATGATTAACTCCAGTGAA+GGG | + | chr1_3:5927388-5927407 | None:intergenic | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | + | chr1_3:5927389-5927408 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGTGCTTTGGTA+TGG | - | chr1_3:5927422-5927441 | Msa0099720:intron | 35.0% |
| !! | TTTTGGTTGTGCTTTGGTAT+GGG | - | chr1_3:5927423-5927442 | Msa0099720:intron | 35.0% |
| ACCATTATCACAGATCAAGA+TGG | - | chr1_3:5927517-5927536 | Msa0099720:intron | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | + | chr1_3:5927521-5927540 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | + | chr1_3:5927622-5927641 | None:intergenic | 35.0% | |
| ! | ATGGGTTGCAAGATAATCAA+TGG | - | chr1_3:5927743-5927762 | Msa0099720:intron | 35.0% |
| TATACTCCATTCGAGCAAAA+TGG | - | chr1_3:5927776-5927795 | Msa0099720:intron | 35.0% | |
| AAATCATGACGTACATAAGC+AGG | + | chr1_3:5927805-5927824 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTCCTTGTTGTAA+CGG | + | chr1_3:5927948-5927967 | None:intergenic | 35.0% |
| GGATATAAAGTTCGCAAAAG+TGG | + | chr1_3:5927997-5928016 | None:intergenic | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | + | chr1_3:5928018-5928037 | None:intergenic | 35.0% | |
| ATTTCATGTGGTTCTTTGAC+TGG | + | chr1_3:5928165-5928184 | None:intergenic | 35.0% | |
| TTATGTAAGGGATTGCACAA+TGG | + | chr1_3:5928195-5928214 | None:intergenic | 35.0% | |
| TAATTATCCATAGATCCAGC+AGG | - | chr1_3:5928284-5928303 | Msa0099720:intron | 35.0% | |
| AATTATCCATAGATCCAGCA+GGG | - | chr1_3:5928285-5928304 | Msa0099720:intron | 35.0% | |
| ! | TTTAGGATGAAGGAAAAGCT+TGG | + | chr1_3:5928396-5928415 | None:intergenic | 35.0% |
| !! | TTTTTGTGTGTGTTTCTGCA+AGG | + | chr1_3:5928421-5928440 | None:intergenic | 35.0% |
| !! | TTCGTTTTTCCGACATAGAT+CGG | - | chr1_3:5928473-5928492 | Msa0099720:intron | 35.0% |
| AATGTCATGTGCATCATCTT+CGG | + | chr1_3:5928522-5928541 | None:intergenic | 35.0% | |
| TAGATAACTCGTCCATGAAT+TGG | + | chr1_3:5928589-5928608 | None:intergenic | 35.0% | |
| ! | ATTCGGTTGAAGTTTTTCTC+TGG | - | chr1_3:5928669-5928688 | Msa0099720:intron | 35.0% |
| ! | TTGAAGTTTTTCTCTGGTGA+GGG | - | chr1_3:5928675-5928694 | Msa0099720:intron | 35.0% |
| ! | TTTGGTGTGAATTCTGCTAT+TGG | - | chr1_3:5928786-5928805 | Msa0099720:intron | 35.0% |
| TTGGTGTGAATTCTGCTATT+GGG | - | chr1_3:5928787-5928806 | Msa0099720:CDS | 35.0% | |
| ! | GCTATAATGTCGTTTAATGG+TGG | - | chr1_3:5928825-5928844 | Msa0099720:CDS | 35.0% |
| !! | GTTTAATGGTGGTGTTTTTG+TGG | - | chr1_3:5928836-5928855 | Msa0099720:CDS | 35.0% |
| !! | ATTGTGGTTGGTTTAACGTT+TGG | - | chr1_3:5928861-5928880 | Msa0099720:CDS | 35.0% |
| ! | CGTTTGGTTACTTCTTGTTT+AGG | - | chr1_3:5928877-5928896 | Msa0099720:CDS | 35.0% |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr1_3:5926707-5926726 | Msa0099720:CDS | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | - | chr1_3:5926725-5926744 | Msa0099720:CDS | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | - | chr1_3:5926764-5926783 | Msa0099720:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr1_3:5926791-5926810 | Msa0099720:CDS | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr1_3:5926798-5926817 | Msa0099720:CDS | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | - | chr1_3:5926856-5926875 | Msa0099720:CDS | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | + | chr1_3:5927232-5927251 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr1_3:5927278-5927297 | Msa0099720:intron | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | - | chr1_3:5927288-5927307 | Msa0099720:intron | 35.0% |
| TGATGATTAACTCCAGTGAA+GGG | + | chr1_3:5927388-5927407 | None:intergenic | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | + | chr1_3:5927389-5927408 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGTGCTTTGGTA+TGG | - | chr1_3:5927422-5927441 | Msa0099720:intron | 35.0% |
| !! | TTTTGGTTGTGCTTTGGTAT+GGG | - | chr1_3:5927423-5927442 | Msa0099720:intron | 35.0% |
| ACCATTATCACAGATCAAGA+TGG | - | chr1_3:5927517-5927536 | Msa0099720:intron | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | + | chr1_3:5927521-5927540 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | + | chr1_3:5927622-5927641 | None:intergenic | 35.0% | |
| ! | ATGGGTTGCAAGATAATCAA+TGG | - | chr1_3:5927743-5927762 | Msa0099720:intron | 35.0% |
| TATACTCCATTCGAGCAAAA+TGG | - | chr1_3:5927776-5927795 | Msa0099720:intron | 35.0% | |
| AAATCATGACGTACATAAGC+AGG | + | chr1_3:5927805-5927824 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTCCTTGTTGTAA+CGG | + | chr1_3:5927948-5927967 | None:intergenic | 35.0% |
| GGATATAAAGTTCGCAAAAG+TGG | + | chr1_3:5927997-5928016 | None:intergenic | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | + | chr1_3:5928018-5928037 | None:intergenic | 35.0% | |
| ATTTCATGTGGTTCTTTGAC+TGG | + | chr1_3:5928165-5928184 | None:intergenic | 35.0% | |
| TTATGTAAGGGATTGCACAA+TGG | + | chr1_3:5928195-5928214 | None:intergenic | 35.0% | |
| TAATTATCCATAGATCCAGC+AGG | - | chr1_3:5928284-5928303 | Msa0099720:intron | 35.0% | |
| AATTATCCATAGATCCAGCA+GGG | - | chr1_3:5928285-5928304 | Msa0099720:intron | 35.0% | |
| ! | TTTAGGATGAAGGAAAAGCT+TGG | + | chr1_3:5928396-5928415 | None:intergenic | 35.0% |
| !! | TTTTTGTGTGTGTTTCTGCA+AGG | + | chr1_3:5928421-5928440 | None:intergenic | 35.0% |
| !! | TTCGTTTTTCCGACATAGAT+CGG | - | chr1_3:5928473-5928492 | Msa0099720:intron | 35.0% |
| AATGTCATGTGCATCATCTT+CGG | + | chr1_3:5928522-5928541 | None:intergenic | 35.0% | |
| TAGATAACTCGTCCATGAAT+TGG | + | chr1_3:5928589-5928608 | None:intergenic | 35.0% | |
| ! | ATTCGGTTGAAGTTTTTCTC+TGG | - | chr1_3:5928669-5928688 | Msa0099720:intron | 35.0% |
| ! | TTGAAGTTTTTCTCTGGTGA+GGG | - | chr1_3:5928675-5928694 | Msa0099720:intron | 35.0% |
| ! | TTTGGTGTGAATTCTGCTAT+TGG | - | chr1_3:5928786-5928805 | Msa0099720:intron | 35.0% |
| TTGGTGTGAATTCTGCTATT+GGG | - | chr1_3:5928787-5928806 | Msa0099720:CDS | 35.0% | |
| ! | GCTATAATGTCGTTTAATGG+TGG | - | chr1_3:5928825-5928844 | Msa0099720:CDS | 35.0% |
| !! | GTTTAATGGTGGTGTTTTTG+TGG | - | chr1_3:5928836-5928855 | Msa0099720:CDS | 35.0% |
| !! | ATTGTGGTTGGTTTAACGTT+TGG | - | chr1_3:5928861-5928880 | Msa0099720:CDS | 35.0% |
| ! | CGTTTGGTTACTTCTTGTTT+AGG | - | chr1_3:5928877-5928896 | Msa0099720:CDS | 35.0% |
| TACATCATCAGAACAAGCCA+TGG | + | chr1_3:5926570-5926589 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr1_3:5926650-5926669 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr1_3:5926659-5926678 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr1_3:5926660-5926679 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr1_3:5926690-5926709 | Msa0099720:CDS | 40.0% | |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | - | chr1_3:5926724-5926743 | Msa0099720:CDS | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr1_3:5926799-5926818 | Msa0099720:CDS | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | - | chr1_3:5926855-5926874 | Msa0099720:CDS | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | - | chr1_3:5926860-5926879 | Msa0099720:CDS | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | - | chr1_3:5927031-5927050 | Msa0099720:intron | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | - | chr1_3:5927076-5927095 | Msa0099720:intron | 40.0% | |
| !! | AGTGGTGGTGTTGATAACAT+TGG | - | chr1_3:5927094-5927113 | Msa0099720:intron | 40.0% |
| GCATTTCAAATGGATGCTGA+AGG | - | chr1_3:5927244-5927263 | Msa0099720:intron | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | - | chr1_3:5927481-5927500 | Msa0099720:intron | 40.0% | |
| ! | AGATGGTTCTATCACGTATG+CGG | - | chr1_3:5927534-5927553 | Msa0099720:intron | 40.0% |
| ATTCTTCTACGGTCGTACAT+AGG | + | chr1_3:5927690-5927709 | None:intergenic | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | + | chr1_3:5927785-5927804 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | - | chr1_3:5927811-5927830 | Msa0099720:intron | 40.0% |
| CATACTTTCACTTCTTTGGG+TGG | + | chr1_3:5927845-5927864 | None:intergenic | 40.0% | |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr1_3:5927904-5927923 | None:intergenic | 40.0% |
| ! | CTCTCTTTCCTTGTTGTAAC+GGG | + | chr1_3:5927947-5927966 | None:intergenic | 40.0% |
| GGAAATATTTGTCCCACAAG+AGG | - | chr1_3:5928109-5928128 | Msa0099720:intron | 40.0% | |
| ! | TTGTCCCACAAGAGGTTTTA+CGG | - | chr1_3:5928117-5928136 | Msa0099720:intron | 40.0% |
| TACTCCGTAAAACCTCTTGT+GGG | + | chr1_3:5928124-5928143 | None:intergenic | 40.0% | |
| TTACTCCGTAAAACCTCTTG+TGG | + | chr1_3:5928125-5928144 | None:intergenic | 40.0% | |
| AAATTTACGAAATGCCCTGC+TGG | + | chr1_3:5928302-5928321 | None:intergenic | 40.0% | |
| !! | TTTTTCGGAGTTACGACGTT+AGG | + | chr1_3:5928349-5928368 | None:intergenic | 40.0% |
| ! | TGTGTTTCTGCAAGGTGTTT+AGG | + | chr1_3:5928413-5928432 | None:intergenic | 40.0% |
| CTATGTCGGAAAAACGAACA+AGG | + | chr1_3:5928471-5928490 | None:intergenic | 40.0% | |
| ! | GTTGAAGTTTTTCTCTGGTG+AGG | - | chr1_3:5928674-5928693 | Msa0099720:intron | 40.0% |
| ! | TGAAGTTTTTCTCTGGTGAG+GGG | - | chr1_3:5928676-5928695 | Msa0099720:intron | 40.0% |
| !! | TCCTCTTCTTGGGTTGAATA+AGG | - | chr1_3:5928731-5928750 | Msa0099720:intron | 40.0% |
| ACCTTATTCAACCCAAGAAG+AGG | + | chr1_3:5928735-5928754 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAATAAGGTTTCG+AGG | - | chr1_3:5928739-5928758 | Msa0099720:intron | 40.0% |
| GAATAAGGTTTCGAGGAACA+AGG | - | chr1_3:5928746-5928765 | Msa0099720:intron | 40.0% | |
| GAGGAACAAGGTTGTTGAAT+CGG | - | chr1_3:5928758-5928777 | Msa0099720:intron | 40.0% | |
| !! | TGGTGTTTTTGTGGCTATTG+TGG | - | chr1_3:5928845-5928864 | Msa0099720:CDS | 40.0% |
| ! | GTTTTTGTGGCTATTGTGGT+TGG | - | chr1_3:5928849-5928868 | Msa0099720:CDS | 40.0% |
| TACATCATCAGAACAAGCCA+TGG | + | chr1_3:5926570-5926589 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr1_3:5926650-5926669 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr1_3:5926659-5926678 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr1_3:5926660-5926679 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr1_3:5926690-5926709 | Msa0099720:CDS | 40.0% | |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | - | chr1_3:5926724-5926743 | Msa0099720:CDS | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr1_3:5926799-5926818 | Msa0099720:CDS | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | - | chr1_3:5926855-5926874 | Msa0099720:CDS | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | - | chr1_3:5926860-5926879 | Msa0099720:CDS | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | - | chr1_3:5927031-5927050 | Msa0099720:intron | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | - | chr1_3:5927076-5927095 | Msa0099720:intron | 40.0% | |
| !! | AGTGGTGGTGTTGATAACAT+TGG | - | chr1_3:5927094-5927113 | Msa0099720:intron | 40.0% |
| GCATTTCAAATGGATGCTGA+AGG | - | chr1_3:5927244-5927263 | Msa0099720:intron | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | - | chr1_3:5927481-5927500 | Msa0099720:intron | 40.0% | |
| ! | AGATGGTTCTATCACGTATG+CGG | - | chr1_3:5927534-5927553 | Msa0099720:intron | 40.0% |
| ATTCTTCTACGGTCGTACAT+AGG | + | chr1_3:5927690-5927709 | None:intergenic | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | + | chr1_3:5927785-5927804 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | - | chr1_3:5927811-5927830 | Msa0099720:intron | 40.0% |
| CATACTTTCACTTCTTTGGG+TGG | + | chr1_3:5927845-5927864 | None:intergenic | 40.0% | |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr1_3:5927904-5927923 | None:intergenic | 40.0% |
| ! | CTCTCTTTCCTTGTTGTAAC+GGG | + | chr1_3:5927947-5927966 | None:intergenic | 40.0% |
| GGAAATATTTGTCCCACAAG+AGG | - | chr1_3:5928109-5928128 | Msa0099720:intron | 40.0% | |
| ! | TTGTCCCACAAGAGGTTTTA+CGG | - | chr1_3:5928117-5928136 | Msa0099720:intron | 40.0% |
| TACTCCGTAAAACCTCTTGT+GGG | + | chr1_3:5928124-5928143 | None:intergenic | 40.0% | |
| TTACTCCGTAAAACCTCTTG+TGG | + | chr1_3:5928125-5928144 | None:intergenic | 40.0% | |
| AAATTTACGAAATGCCCTGC+TGG | + | chr1_3:5928302-5928321 | None:intergenic | 40.0% | |
| !! | TTTTTCGGAGTTACGACGTT+AGG | + | chr1_3:5928349-5928368 | None:intergenic | 40.0% |
| ! | TGTGTTTCTGCAAGGTGTTT+AGG | + | chr1_3:5928413-5928432 | None:intergenic | 40.0% |
| CTATGTCGGAAAAACGAACA+AGG | + | chr1_3:5928471-5928490 | None:intergenic | 40.0% | |
| ! | GTTGAAGTTTTTCTCTGGTG+AGG | - | chr1_3:5928674-5928693 | Msa0099720:intron | 40.0% |
| ! | TGAAGTTTTTCTCTGGTGAG+GGG | - | chr1_3:5928676-5928695 | Msa0099720:intron | 40.0% |
| !! | TCCTCTTCTTGGGTTGAATA+AGG | - | chr1_3:5928731-5928750 | Msa0099720:intron | 40.0% |
| ACCTTATTCAACCCAAGAAG+AGG | + | chr1_3:5928735-5928754 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAATAAGGTTTCG+AGG | - | chr1_3:5928739-5928758 | Msa0099720:intron | 40.0% |
| GAATAAGGTTTCGAGGAACA+AGG | - | chr1_3:5928746-5928765 | Msa0099720:intron | 40.0% | |
| GAGGAACAAGGTTGTTGAAT+CGG | - | chr1_3:5928758-5928777 | Msa0099720:intron | 40.0% | |
| !! | TGGTGTTTTTGTGGCTATTG+TGG | - | chr1_3:5928845-5928864 | Msa0099720:CDS | 40.0% |
| ! | GTTTTTGTGGCTATTGTGGT+TGG | - | chr1_3:5928849-5928868 | Msa0099720:CDS | 40.0% |
| TGTGGATGAAGATTCCACCA+TGG | - | chr1_3:5926550-5926569 | Msa0099720:CDS | 45.0% | |
| ATCATCAGAACAAGCCATGG+TGG | + | chr1_3:5926567-5926586 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr1_3:5926593-5926612 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr1_3:5926592-5926611 | Msa0099720:CDS | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr1_3:5926649-5926668 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr1_3:5926651-5926670 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr1_3:5926649-5926668 | Msa0099720:CDS | 45.0% |
| TGAAACTAGGGTAGGATGCA+AGG | - | chr1_3:5926868-5926887 | Msa0099720:CDS | 45.0% | |
| !! | GTGCTGCATGATTCTGGTTT+AGG | - | chr1_3:5927037-5927056 | Msa0099720:intron | 45.0% |
| GTCTTATGTACGGAAAGTGG+TGG | - | chr1_3:5927079-5927098 | Msa0099720:intron | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | + | chr1_3:5927379-5927398 | None:intergenic | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | - | chr1_3:5927464-5927483 | Msa0099720:intron | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | - | chr1_3:5927477-5927496 | Msa0099720:intron | 45.0% | |
| !! | CTTGTTGTAACGGGCATCAA+GGG | + | chr1_3:5927938-5927957 | None:intergenic | 45.0% |
| ! | CTGCAAGGTGTTTAGGATGA+AGG | + | chr1_3:5928406-5928425 | None:intergenic | 45.0% |
| AGATTCGGACTCCTCTTCTT+GGG | - | chr1_3:5928721-5928740 | Msa0099720:intron | 45.0% | |
| TAGGAGTCAGAGTGAAGAAG+AGG | - | chr1_3:5928896-5928915 | Msa0099720:CDS | 45.0% | |
| TGTGGATGAAGATTCCACCA+TGG | - | chr1_3:5926550-5926569 | Msa0099720:CDS | 45.0% | |
| ATCATCAGAACAAGCCATGG+TGG | + | chr1_3:5926567-5926586 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr1_3:5926593-5926612 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr1_3:5926592-5926611 | Msa0099720:CDS | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr1_3:5926649-5926668 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr1_3:5926651-5926670 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr1_3:5926649-5926668 | Msa0099720:CDS | 45.0% |
| TGAAACTAGGGTAGGATGCA+AGG | - | chr1_3:5926868-5926887 | Msa0099720:CDS | 45.0% | |
| !! | GTGCTGCATGATTCTGGTTT+AGG | - | chr1_3:5927037-5927056 | Msa0099720:intron | 45.0% |
| GTCTTATGTACGGAAAGTGG+TGG | - | chr1_3:5927079-5927098 | Msa0099720:intron | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | + | chr1_3:5927379-5927398 | None:intergenic | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | - | chr1_3:5927464-5927483 | Msa0099720:intron | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | - | chr1_3:5927477-5927496 | Msa0099720:intron | 45.0% | |
| !! | CTTGTTGTAACGGGCATCAA+GGG | + | chr1_3:5927938-5927957 | None:intergenic | 45.0% |
| ! | CTGCAAGGTGTTTAGGATGA+AGG | + | chr1_3:5928406-5928425 | None:intergenic | 45.0% |
| AGATTCGGACTCCTCTTCTT+GGG | - | chr1_3:5928721-5928740 | Msa0099720:intron | 45.0% | |
| TAGGAGTCAGAGTGAAGAAG+AGG | - | chr1_3:5928896-5928915 | Msa0099720:CDS | 45.0% | |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr1_3:5926648-5926667 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | - | chr1_3:5926670-5926689 | Msa0099720:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr1_3:5926675-5926694 | Msa0099720:CDS | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr1_3:5926684-5926703 | None:intergenic | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | - | chr1_3:5927373-5927392 | Msa0099720:intron | 50.0% |
| !! | CCTTGTTGTAACGGGCATCA+AGG | + | chr1_3:5927939-5927958 | None:intergenic | 50.0% |
| CCTTGATGCCCGTTACAACA+AGG | - | chr1_3:5927936-5927955 | Msa0099720:intron | 50.0% | |
| GAAATGCCCTGCTGGATCTA+TGG | + | chr1_3:5928294-5928313 | None:intergenic | 50.0% | |
| ! | AGTTTTTCTCTGGTGAGGGG+AGG | - | chr1_3:5928679-5928698 | Msa0099720:intron | 50.0% |
| AGAAGAGGAGTCCGAATCTC+CGG | + | chr1_3:5928720-5928739 | None:intergenic | 50.0% | |
| GAGATTCGGACTCCTCTTCT+TGG | - | chr1_3:5928720-5928739 | Msa0099720:intron | 50.0% | |
| TCAGAGTGAAGAAGAGGCTG+CGG | - | chr1_3:5928902-5928921 | Msa0099720:CDS | 50.0% | |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr1_3:5926648-5926667 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | - | chr1_3:5926670-5926689 | Msa0099720:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr1_3:5926675-5926694 | Msa0099720:CDS | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr1_3:5926684-5926703 | None:intergenic | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | - | chr1_3:5927373-5927392 | Msa0099720:intron | 50.0% |
| !! | CCTTGTTGTAACGGGCATCA+AGG | + | chr1_3:5927939-5927958 | None:intergenic | 50.0% |
| CCTTGATGCCCGTTACAACA+AGG | - | chr1_3:5927936-5927955 | Msa0099720:intron | 50.0% | |
| GAAATGCCCTGCTGGATCTA+TGG | + | chr1_3:5928294-5928313 | None:intergenic | 50.0% | |
| ! | AGTTTTTCTCTGGTGAGGGG+AGG | - | chr1_3:5928679-5928698 | Msa0099720:intron | 50.0% |
| AGAAGAGGAGTCCGAATCTC+CGG | + | chr1_3:5928720-5928739 | None:intergenic | 50.0% | |
| GAGATTCGGACTCCTCTTCT+TGG | - | chr1_3:5928720-5928739 | Msa0099720:intron | 50.0% | |
| TCAGAGTGAAGAAGAGGCTG+CGG | - | chr1_3:5928902-5928921 | Msa0099720:CDS | 50.0% | |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr1_3:5926638-5926657 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr1_3:5926644-5926663 | Msa0099720:CDS | 55.0% | |
| AGTAACACGGCCCATGCGAA+AGG | + | chr1_3:5926738-5926757 | None:intergenic | 55.0% | |
| TATCACGTATGCGGTCGCGA+AGG | - | chr1_3:5927543-5927562 | Msa0099720:intron | 55.0% | |
| !! | GGTCGCGAAGGTGTTTCCAA+AGG | - | chr1_3:5927555-5927574 | Msa0099720:intron | 55.0% |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr1_3:5926638-5926657 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr1_3:5926644-5926663 | Msa0099720:CDS | 55.0% | |
| AGTAACACGGCCCATGCGAA+AGG | + | chr1_3:5926738-5926757 | None:intergenic | 55.0% | |
| TATCACGTATGCGGTCGCGA+AGG | - | chr1_3:5927543-5927562 | Msa0099720:intron | 55.0% | |
| !! | GGTCGCGAAGGTGTTTCCAA+AGG | - | chr1_3:5927555-5927574 | Msa0099720:intron | 55.0% |
| ! | AGTCGCCGGTGCCGGAGATT+CGG | - | chr1_3:5928706-5928725 | Msa0099720:intron | 65.0% |
| GGAGTCCGAATCTCCGGCAC+CGG | + | chr1_3:5928714-5928733 | None:intergenic | 65.0% | |
| ! | AGTCGCCGGTGCCGGAGATT+CGG | - | chr1_3:5928706-5928725 | Msa0099720:intron | 65.0% |
| GGAGTCCGAATCTCCGGCAC+CGG | + | chr1_3:5928714-5928733 | None:intergenic | 65.0% | |
| TGAGGGGAGGACGCAGTCGC+CGG | - | chr1_3:5928692-5928711 | Msa0099720:intron | 70.0% | |
| TGAGGGGAGGACGCAGTCGC+CGG | - | chr1_3:5928692-5928711 | Msa0099720:intron | 70.0% | |
| GAGGACGCAGTCGCCGGTGC+CGG | - | chr1_3:5928698-5928717 | Msa0099720:intron | 75.0% | |
| GAGGACGCAGTCGCCGGTGC+CGG | - | chr1_3:5928698-5928717 | Msa0099720:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5926542 | 5928956 | 5926542 | ID=Msa0099720;Name=Msa0099720 |
| chr1_3 | mRNA | 5926542 | 5928956 | 5926542 | ID=Msa0099720-mRNA-1;Parent=Msa0099720;Name=Msa0099720-mRNA-1;_AED=0.23;_eAED=0.25;_QI=0|0|0|1|0|0|2|0|211 |
| chr1_3 | exon | 5928787 | 5928956 | 5928787 | ID=Msa0099720-mRNA-1:exon:2292;Parent=Msa0099720-mRNA-1 |
| chr1_3 | exon | 5926542 | 5927007 | 5926542 | ID=Msa0099720-mRNA-1:exon:2291;Parent=Msa0099720-mRNA-1 |
| chr1_3 | CDS | 5928787 | 5928956 | 5928787 | ID=Msa0099720-mRNA-1:cds;Parent=Msa0099720-mRNA-1 |
| chr1_3 | CDS | 5926542 | 5927007 | 5926542 | ID=Msa0099720-mRNA-1:cds;Parent=Msa0099720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
