AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0421800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421800 MtrunA17_Chr3g0122461 96.585 205 3 1 1 201 1 205 5.84e-148 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421800 AT1G27385.1 75.000 148 31 1 54 201 61 202 1.05e-76 229
Msa0421800 AT1G27385.3 74.324 148 32 1 54 201 61 202 7.56e-76 228
Msa0421800 AT1G27385.2 74.324 148 31 2 54 201 61 201 4.29e-74 222
Msa0421800 AT1G27385.4 74.324 148 31 2 54 201 61 201 1.96e-73 223

Find 71 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATAATTAAGTGCAAAAT+TGG 0.188824 3_2:-70834591 Msa0421800:three_prime_UTR
CATCTACGGCTCAGTGATTC+AGG 0.227333 3_2:+70834453 None:intergenic
TATAATCATAAAATAATTAT+TGG 0.243829 3_2:+70834518 None:intergenic
TTGGACTGGCCCAATGTTTA+CGG 0.293987 3_2:+70834907 None:intergenic
GCTGTGTTGAAGGCCATTTC+AGG 0.308532 3_2:-70837503 Msa0421800:intron
CGAAAACCTCCTCTCTTATT+CGG 0.315627 3_2:+70837638 None:intergenic
ATGGGTTGCTTTAGACAAAA+AGG 0.324861 3_2:-70837319 Msa0421800:intron
GTAAAGGTTTGAATTGGAAT+TGG 0.326338 3_2:+70837675 None:intergenic
CAAACTACGAATATGGTTAT+TGG 0.349962 3_2:-70837372 Msa0421800:CDS
TGAATACATACCCAACTGTT+AGG 0.369842 3_2:-70837126 Msa0421800:CDS
GATAGGACAAACTACGAATA+TGG 0.387015 3_2:-70837379 Msa0421800:CDS
TCCTCAAGAAGCTGTGTTGA+AGG 0.392868 3_2:-70837513 Msa0421800:CDS
TGCAATTAAGAAAATGAAAC+AGG 0.399689 3_2:+70834429 None:intergenic
CCAAGTTGTTTCCAGCGAAC+AGG 0.415316 3_2:-70834888 Msa0421800:intron
ATAAAACATACCTGGGGAAT+GGG 0.419641 3_2:+70837025 None:intergenic
CGTCCCTTTCACCGTGGTAA+TGG 0.421777 3_2:-70837596 Msa0421800:CDS
AGGCATGTCAATATATCAAT+TGG 0.427642 3_2:+70834664 None:intergenic
TTTCTTTGACACAACAGATT+GGG 0.444590 3_2:-70834393 Msa0421800:three_prime_UTR
GTGAAAGGGACGAGCCTTAA+CGG 0.448927 3_2:+70837607 None:intergenic
CCTGTTCGCTGGAAACAACT+TGG 0.461413 3_2:+70834888 None:intergenic
CGGATGATTCTACTAATGAA+TGG 0.463843 3_2:-70837338 Msa0421800:CDS
GAAGATGGAATTACCTGAAA+TGG 0.471281 3_2:+70837490 None:intergenic
CATAAAACATACCTGGGGAA+TGG 0.489276 3_2:+70837024 None:intergenic
GAATACATACCCAACTGTTA+GGG 0.490009 3_2:-70837125 Msa0421800:CDS
ATGCTATGAGGAGGGATGAC+AGG 0.511597 3_2:-70834730 Msa0421800:CDS
AATATGTGTCCGTAAACATT+GGG 0.511909 3_2:-70834916 Msa0421800:CDS
AAATATGTGTCCGTAAACAT+TGG 0.512566 3_2:-70834917 Msa0421800:CDS
GGATGATTCTACTAATGAAT+GGG 0.513339 3_2:-70837337 Msa0421800:CDS
AATTCCATTACCACGGTGAA+AGG 0.519265 3_2:+70837592 None:intergenic
GGGTTCACTGCAATAGGAAC+CGG 0.532077 3_2:-70837103 Msa0421800:CDS
AGGCAGAAATACCTGTTCGC+TGG 0.537747 3_2:+70834877 None:intergenic
TCGCTGGAAACAACTTGGAC+TGG 0.541126 3_2:+70834893 None:intergenic
GCCTTCAACACAGCTTCTTG+AGG 0.541456 3_2:+70837512 None:intergenic
ATACCTGGGGAATGGGCTGT+TGG 0.541945 3_2:+70837032 None:intergenic
ATGCCTGCTTTCTAGTGGTT+AGG 0.549502 3_2:-70834647 Msa0421800:three_prime_UTR
ATTCCATTACCACGGTGAAA+GGG 0.551205 3_2:+70837593 None:intergenic
TCATAGCATTATATACAGCT+TGG 0.551996 3_2:+70834744 None:intergenic
CAGCCTAACCACTAGAAAGC+AGG 0.556389 3_2:+70834644 None:intergenic
TTCACTGCAATAGGAACCGG+TGG 0.562823 3_2:-70837100 Msa0421800:CDS
GGATGACTTCGTGCAAGCTA+TGG 0.570776 3_2:-70837077 Msa0421800:CDS
TCTAAGACAGAAGGAAGGAT+AGG 0.570938 3_2:-70837396 Msa0421800:CDS
GCTTCGTTCAGCGATGATTG+TGG 0.572314 3_2:-70837711 Msa0421800:CDS
TTGACATGCCTGCTTTCTAG+TGG 0.576997 3_2:-70834652 Msa0421800:three_prime_UTR
AATTGGAATTGGAATTGCAA+TGG 0.580064 3_2:+70837686 None:intergenic
AATCCAACAGCCCATTCCCC+AGG 0.580170 3_2:-70837035 Msa0421800:intron
ATCTACGGCTCAGTGATTCA+GGG 0.586429 3_2:+70834454 None:intergenic
ACTACGAATATGGTTATTGG+AGG 0.589546 3_2:-70837369 Msa0421800:CDS
TTCAACACAGCTTCTTGAGG+AGG 0.596405 3_2:+70837515 None:intergenic
GCAGAGGTATCTAAGACAGA+AGG 0.603237 3_2:-70837405 Msa0421800:intron
CTGTATATAATGCTATGAGG+AGG 0.611383 3_2:-70834739 Msa0421800:CDS
TGTATATAATGCTATGAGGA+GGG 0.612053 3_2:-70834738 Msa0421800:CDS
AATTTGAATCCGAATAAGAG+AGG 0.614217 3_2:-70837647 Msa0421800:CDS
AAGCTGTATATAATGCTATG+AGG 0.615037 3_2:-70834742 Msa0421800:CDS
AAAATGAAACAGGACATCTA+CGG 0.620359 3_2:+70834439 None:intergenic
TTGAATCCGAATAAGAGAGG+AGG 0.625769 3_2:-70837644 Msa0421800:CDS
GAAGCACAAGGTATCAGCAA+GGG 0.626581 3_2:-70834942 Msa0421800:CDS
TGAAGCACAAGGTATCAGCA+AGG 0.632271 3_2:-70834943 Msa0421800:CDS
AAGCACAAGGTATCAGCAAG+GGG 0.636193 3_2:-70834941 Msa0421800:CDS
AGGTATCTAAGACAGAAGGA+AGG 0.645582 3_2:-70837401 Msa0421800:CDS
ACTTAATTATAACGATATCG+TGG 0.647194 3_2:+70834601 None:intergenic
GGTTATTGGAGGAACTGTCA+CGG 0.650079 3_2:-70837358 Msa0421800:CDS
AATACATACCCAACTGTTAG+GGG 0.655407 3_2:-70837124 Msa0421800:CDS
ACAGGGGAGTGTGAAGCACA+AGG 0.655631 3_2:-70834954 Msa0421800:intron
TTGCACGAAGTCATCCCCAC+CGG 0.656764 3_2:+70837084 None:intergenic
CACTGCAATAGGAACCGGTG+GGG 0.661994 3_2:-70837098 Msa0421800:CDS
AACGGAGAATTCCATTACCA+CGG 0.679173 3_2:+70837585 None:intergenic
GTGTATCGTTACGAGAGCAA+CGG 0.696668 3_2:+70837567 None:intergenic
ATACATACCCAACTGTTAGG+GGG 0.700615 3_2:-70837123 Msa0421800:CDS
TCACTGCAATAGGAACCGGT+GGG 0.708899 3_2:-70837099 Msa0421800:CDS
AAGGCTCGTCCCTTTCACCG+TGG 0.745511 3_2:-70837602 Msa0421800:CDS
TCATCGTGAAAAGACGACGA+CGG 0.780619 3_2:+70837545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTGAACA+AGG - chr3_2:70836605-70836624 Msa0421800:intron 10.0%
!! ACCAAATATTATTCTTATAA+AGG - chr3_2:70835403-70835422 Msa0421800:intron 15.0%
!! ACCTTTATAAGAATAATATT+TGG + chr3_2:70835407-70835426 None:intergenic 15.0%
!! TAACAATTTAATACAATTCT+TGG + chr3_2:70835796-70835815 None:intergenic 15.0%
!! TAAAAAGTAAAGGTTTGAAT+TGG + chr3_2:70834540-70834559 None:intergenic 20.0%
!! GGATTCAAATTAAAAAGTAA+AGG + chr3_2:70834550-70834569 None:intergenic 20.0%
!! AATTAAATCAAATGTGAAGA+TGG + chr3_2:70834734-70834753 None:intergenic 20.0%
!!! TCAATACTTTTTCAGAAATT+TGG - chr3_2:70835232-70835251 Msa0421800:intron 20.0%
!! GTATAAAAAAAAAGTTGTTG+CGG + chr3_2:70835323-70835342 None:intergenic 20.0%
!!! ATCTATCTGCTAAATATTTT+TGG - chr3_2:70835747-70835766 Msa0421800:intron 20.0%
!!! CTAAATATTTTTGGCTTATA+AGG - chr3_2:70835756-70835775 Msa0421800:intron 20.0%
!! TCAAAAGTTAGTATTTAGAA+GGG - chr3_2:70836684-70836703 Msa0421800:intron 20.0%
!!! AGCCTAAAATTTTCTTATTT+GGG + chr3_2:70836769-70836788 None:intergenic 20.0%
!!! TAGCCTAAAATTTTCTTATT+TGG + chr3_2:70836770-70836789 None:intergenic 20.0%
!!! ATGAACAGTTTTCATTAATA+TGG - chr3_2:70837168-70837187 Msa0421800:intron 20.0%
!!! TGAATTTTGTTGTATTTTTC+AGG - chr3_2:70837438-70837457 Msa0421800:intron 20.0%
!! GTTATAATTAAGTGCAAAAT+TGG - chr3_2:70837615-70837634 Msa0421800:CDS 20.0%
!!! AAAACACAGATTTTTCGATA+AGG + chr3_2:70834408-70834427 None:intergenic 25.0%
! AAAGAGACAGAAAAAAACAA+TGG - chr3_2:70834459-70834478 Msa0421800:three_prime_UTR 25.0%
! GAGCTTCAAATAAATGTTAA+TGG - chr3_2:70834776-70834795 Msa0421800:intron 25.0%
! TTGATACATAAAACATACCT+GGG + chr3_2:70835191-70835210 None:intergenic 25.0%
!!! TTTTTCAGAAATTTGGACAT+TGG - chr3_2:70835239-70835258 Msa0421800:intron 25.0%
! TAAGTTGCACCTATTTATTT+AGG - chr3_2:70835262-70835281 Msa0421800:intron 25.0%
! AAGTTGCACCTATTTATTTA+GGG - chr3_2:70835263-70835282 Msa0421800:intron 25.0%
!!! TATTTGTTGTTATTACCGTA+AGG - chr3_2:70835433-70835452 Msa0421800:intron 25.0%
! TAGACACAAAATTAACCTTA+CGG + chr3_2:70835451-70835470 None:intergenic 25.0%
!!! AATATTTTTGGCTTATAAGG+TGG - chr3_2:70835759-70835778 Msa0421800:intron 25.0%
! ATGATAATATGTAAACCTGA+CGG + chr3_2:70835847-70835866 None:intergenic 25.0%
! TATATTCGTATCCATATTCA+AGG - chr3_2:70836096-70836115 Msa0421800:intron 25.0%
! ATATTCGTATCCATATTCAA+GGG - chr3_2:70836097-70836116 Msa0421800:intron 25.0%
!!! TCTTTTAAAAGGTCTAACTT+GGG + chr3_2:70836292-70836311 None:intergenic 25.0%
!!! TATAATTTTCAAGGACTTCA+TGG + chr3_2:70836504-70836523 None:intergenic 25.0%
! TGAAGTCCTTGAAAATTATA+TGG - chr3_2:70836504-70836523 Msa0421800:intron 25.0%
!!! TTTTTTTTTTGAACAAGGAG+AGG - chr3_2:70836610-70836629 Msa0421800:intron 25.0%
! GTCAAAAGTTAGTATTTAGA+AGG - chr3_2:70836683-70836702 Msa0421800:intron 25.0%
!! GTCCCAAATAAGAAAATTTT+AGG - chr3_2:70836764-70836783 Msa0421800:intron 25.0%
! TAAAATTCATAACTTAGTCC+CGG - chr3_2:70836928-70836947 Msa0421800:intron 25.0%
! GATCATCATTAACAATAAGT+TGG + chr3_2:70837039-70837058 None:intergenic 25.0%
! AATGTTAACATATTGCTTAC+AGG - chr3_2:70837234-70837253 Msa0421800:intron 25.0%
! ATGTTAACATATTGCTTACA+GGG - chr3_2:70837235-70837254 Msa0421800:intron 25.0%
! AAAAACAGAAAACATAGAAG+AGG + chr3_2:70837389-70837408 None:intergenic 25.0%
! ACTTAATTATAACGATATCG+TGG + chr3_2:70837608-70837627 None:intergenic 25.0%
! TGCAATTAAGAAAATGAAAC+AGG + chr3_2:70837780-70837799 None:intergenic 25.0%
!! TCATTTTCTTAATTGCAGAT+TGG - chr3_2:70837783-70837802 Msa0421800:five_prime_UTR 25.0%
AATTGGAATTGGAATTGCAA+TGG + chr3_2:70834523-70834542 None:intergenic 30.0%
GTAAAGGTTTGAATTGGAAT+TGG + chr3_2:70834534-70834553 None:intergenic 30.0%
AATTTGAATCCGAATAAGAG+AGG - chr3_2:70834559-70834578 Msa0421800:three_prime_UTR 30.0%
ATAAATGTTAATGGTTGCAG+AGG - chr3_2:70834785-70834804 Msa0421800:intron 30.0%
CAAACTACGAATATGGTTAT+TGG - chr3_2:70834834-70834853 Msa0421800:intron 30.0%
GGATGATTCTACTAATGAAT+GGG - chr3_2:70834869-70834888 Msa0421800:intron 30.0%
TGATACATAAAACATACCTG+GGG + chr3_2:70835190-70835209 None:intergenic 30.0%
GTTGATACATAAAACATACC+TGG + chr3_2:70835192-70835211 None:intergenic 30.0%
AGTTGCACCTATTTATTTAG+GGG - chr3_2:70835264-70835283 Msa0421800:intron 30.0%
ATCTTATATGCTGTGTAACT+TGG - chr3_2:70835482-70835501 Msa0421800:intron 30.0%
AGGTTTACATATTATCATCG+AGG - chr3_2:70835849-70835868 Msa0421800:intron 30.0%
! ACTAGTCTAAATGAGACAAT+GGG - chr3_2:70835916-70835935 Msa0421800:intron 30.0%
AAACCATTTACAGCACATAT+TGG + chr3_2:70836036-70836055 None:intergenic 30.0%
! TTCATAAGAGACTTCTAGAA+GGG + chr3_2:70836066-70836085 None:intergenic 30.0%
TTTCATAAGAGACTTCTAGA+AGG + chr3_2:70836067-70836086 None:intergenic 30.0%
TGTCCTTATAAAAAGACTAG+AGG - chr3_2:70836148-70836167 Msa0421800:intron 30.0%
!! CTTTTAAAAGGTCTAACTTG+GGG + chr3_2:70836291-70836310 None:intergenic 30.0%
!! GTCTTTTAAAAGGTCTAACT+TGG + chr3_2:70836293-70836312 None:intergenic 30.0%
! GAGAAGCCATATAATTTTCA+AGG + chr3_2:70836513-70836532 None:intergenic 30.0%
!! TACTAACTTTTGACTGTTGT+TGG + chr3_2:70836677-70836696 None:intergenic 30.0%
!!! AATTTTAGGCTAGCCTTTAA+TGG - chr3_2:70836778-70836797 Msa0421800:intron 30.0%
GGAAACTGAAATACCATTAA+AGG + chr3_2:70836794-70836813 None:intergenic 30.0%
! TAAATTTTATCATCACCCAC+CGG + chr3_2:70836950-70836969 None:intergenic 30.0%
TCTACATATCCATATTGTGT+TGG + chr3_2:70836992-70837011 None:intergenic 30.0%
ACAATATGGATATGTAGAGT+TGG - chr3_2:70836994-70837013 Msa0421800:intron 30.0%
TGTTAACATATTGCTTACAG+GGG - chr3_2:70837236-70837255 Msa0421800:intron 30.0%
AAATATGTGTCCGTAAACAT+TGG - chr3_2:70837289-70837308 Msa0421800:intron 30.0%
AATATGTGTCCGTAAACATT+GGG - chr3_2:70837290-70837309 Msa0421800:intron 30.0%
GGAAAAGAAAAAAACGAACA+AGG + chr3_2:70837352-70837371 None:intergenic 30.0%
!!! TTTTCTGTTTTTTCTGATCC+TGG - chr3_2:70837397-70837416 Msa0421800:CDS 30.0%
!!! TTTCTGTTTTTTCTGATCCT+GGG - chr3_2:70837398-70837417 Msa0421800:CDS 30.0%
TCATAGCATTATATACAGCT+TGG + chr3_2:70837465-70837484 None:intergenic 30.0%
AAGCTGTATATAATGCTATG+AGG - chr3_2:70837464-70837483 Msa0421800:intron 30.0%
TGTATATAATGCTATGAGGA+GGG - chr3_2:70837468-70837487 Msa0421800:intron 30.0%
AGGCATGTCAATATATCAAT+TGG + chr3_2:70837545-70837564 None:intergenic 30.0%
AAAATGAAACAGGACATCTA+CGG + chr3_2:70837770-70837789 None:intergenic 30.0%
! TTTTCTTTGACACAACAGAT+TGG - chr3_2:70837812-70837831 Msa0421800:five_prime_UTR 30.0%
TTTCTTTGACACAACAGATT+GGG - chr3_2:70837813-70837832 Msa0421800:five_prime_UTR 30.0%
GAAGATGGAATTACCTGAAA+TGG + chr3_2:70834719-70834738 None:intergenic 35.0%
GATAGGACAAACTACGAATA+TGG - chr3_2:70834827-70834846 Msa0421800:intron 35.0%
ACTACGAATATGGTTATTGG+AGG - chr3_2:70834837-70834856 Msa0421800:intron 35.0%
CGGATGATTCTACTAATGAA+TGG - chr3_2:70834868-70834887 Msa0421800:intron 35.0%
! ATGGGTTGCTTTAGACAAAA+AGG - chr3_2:70834887-70834906 Msa0421800:intron 35.0%
!! CTGTTGTGTGTTACTTACAT+AGG - chr3_2:70835057-70835076 Msa0421800:intron 35.0%
TGAATACATACCCAACTGTT+AGG - chr3_2:70835080-70835099 Msa0421800:intron 35.0%
GAATACATACCCAACTGTTA+GGG - chr3_2:70835081-70835100 Msa0421800:intron 35.0%
AATACATACCCAACTGTTAG+GGG - chr3_2:70835082-70835101 Msa0421800:intron 35.0%
ATAAAACATACCTGGGGAAT+GGG + chr3_2:70835184-70835203 None:intergenic 35.0%
! TGACTTTAGAAGTCCAGTAT+AGG - chr3_2:70835661-70835680 Msa0421800:intron 35.0%
ATAATATGTAAACCTGACGG+TGG + chr3_2:70835844-70835863 None:intergenic 35.0%
! CACTAGTCTAAATGAGACAA+TGG - chr3_2:70835915-70835934 Msa0421800:intron 35.0%
CTAGTCTAAATGAGACAATG+GGG - chr3_2:70835917-70835936 Msa0421800:intron 35.0%
GATCATAGGATTTCACACAA+TGG - chr3_2:70835982-70836001 Msa0421800:intron 35.0%
TTGCCAATATGTGCTGTAAA+TGG - chr3_2:70836030-70836049 Msa0421800:intron 35.0%
!! CCTCCTCTAGTCTTTTTATA+AGG + chr3_2:70836154-70836173 None:intergenic 35.0%
CCTTATAAAAAGACTAGAGG+AGG - chr3_2:70836151-70836170 Msa0421800:intron 35.0%
TATAAAAAGACTAGAGGAGG+AGG - chr3_2:70836154-70836173 Msa0421800:intron 35.0%
! TCACTGTCTCGTCTTTTAAA+AGG + chr3_2:70836303-70836322 None:intergenic 35.0%
TTCAAGGACTTCATGGAATT+TGG + chr3_2:70836497-70836516 None:intergenic 35.0%
! AAATTTTATCATCACCCACC+GGG + chr3_2:70836949-70836968 None:intergenic 35.0%
! ATTGTGTTGGTGTTCTTCTA+CGG + chr3_2:70836979-70836998 None:intergenic 35.0%
AGAAGAACACCAACACAATA+TGG - chr3_2:70836980-70836999 Msa0421800:intron 35.0%
!! GATTTCCTTCGAGTTGTTAT+AGG - chr3_2:70837127-70837146 Msa0421800:CDS 35.0%
! CTTTTCCTATAACAACTCGA+AGG + chr3_2:70837135-70837154 None:intergenic 35.0%
GGTACATCTTCACTTACATT+TGG - chr3_2:70837189-70837208 Msa0421800:intron 35.0%
ACATCTTCACTTACATTTGG+TGG - chr3_2:70837192-70837211 Msa0421800:intron 35.0%
ATATCAATGTATATTCGCCC+AGG + chr3_2:70837418-70837437 None:intergenic 35.0%
CTGTATATAATGCTATGAGG+AGG - chr3_2:70837467-70837486 Msa0421800:intron 35.0%
AGAAAAAAACAATGGCGTGC+AGG - chr3_2:70834467-70834486 Msa0421800:three_prime_UTR 40.0%
TTGAATCCGAATAAGAGAGG+AGG - chr3_2:70834562-70834581 Msa0421800:three_prime_UTR 40.0%
CGAAAACCTCCTCTCTTATT+CGG + chr3_2:70834571-70834590 None:intergenic 40.0%
ATTCCATTACCACGGTGAAA+GGG + chr3_2:70834616-70834635 None:intergenic 40.0%
AATTCCATTACCACGGTGAA+AGG + chr3_2:70834617-70834636 None:intergenic 40.0%
AACGGAGAATTCCATTACCA+CGG + chr3_2:70834624-70834643 None:intergenic 40.0%
! TCGTCTTTTCACGATGATCA+AGG - chr3_2:70834667-70834686 Msa0421800:three_prime_UTR 40.0%
! AGGTATCTAAGACAGAAGGA+AGG - chr3_2:70834805-70834824 Msa0421800:intron 40.0%
! TCTAAGACAGAAGGAAGGAT+AGG - chr3_2:70834810-70834829 Msa0421800:intron 40.0%
ATACATACCCAACTGTTAGG+GGG - chr3_2:70835083-70835102 Msa0421800:intron 40.0%
CATAAAACATACCTGGGGAA+TGG + chr3_2:70835185-70835204 None:intergenic 40.0%
TGCACCTATTTATTTAGGGG+CGG - chr3_2:70835267-70835286 Msa0421800:intron 40.0%
ATTGACGTGATGCTTATTGC+TGG - chr3_2:70835517-70835536 Msa0421800:intron 40.0%
GATCAAATTGCAGCCTATAC+TGG + chr3_2:70835677-70835696 None:intergenic 40.0%
ATGCAATCTTAGAACCACCA+CGG + chr3_2:70835715-70835734 None:intergenic 40.0%
! GCTTGACATAGTTTGTGGTT+TGG + chr3_2:70835822-70835841 None:intergenic 40.0%
TTATGAAGGACGCTGATCAT+AGG - chr3_2:70835968-70835987 Msa0421800:intron 40.0%
AACCTTTAAGCAGCTACTCA+TGG - chr3_2:70836007-70836026 Msa0421800:intron 40.0%
AACCATGAGTAGCTGCTTAA+AGG + chr3_2:70836012-70836031 None:intergenic 40.0%
!! GAGACTTCTAGAAGGGATTT+TGG + chr3_2:70836059-70836078 None:intergenic 40.0%
TTTGCTGCATCCCTTGAATA+TGG + chr3_2:70836110-70836129 None:intergenic 40.0%
TAATGGAAAGATCAGTCACC+CGG + chr3_2:70836190-70836209 None:intergenic 40.0%
! GTGTAGGTAGGAGTACATAA+TGG + chr3_2:70836207-70836226 None:intergenic 40.0%
AAAAGGTCTAACTTGGGGAT+GGG + chr3_2:70836286-70836305 None:intergenic 40.0%
TAAAAGGTCTAACTTGGGGA+TGG + chr3_2:70836287-70836306 None:intergenic 40.0%
AAGTGGAGAAGCAAAAGATG+AGG + chr3_2:70836405-70836424 None:intergenic 40.0%
AAGGACTTCATGGAATTTGG+AGG + chr3_2:70836494-70836513 None:intergenic 40.0%
CGGTGCAAAATTCCAAACAT+GGG + chr3_2:70836828-70836847 None:intergenic 40.0%
TCGGTGCAAAATTCCAAACA+TGG + chr3_2:70836829-70836848 None:intergenic 40.0%
!! GTTTGGAATTTTGCACCGAA+TGG - chr3_2:70836830-70836849 Msa0421800:intron 40.0%
! GGTAAAAAGCACATTCCTGT+TGG + chr3_2:70836856-70836875 None:intergenic 40.0%
ACGTATCGTAACAGTTGTCA+AGG - chr3_2:70836894-70836913 Msa0421800:intron 40.0%
TATCGTAACAGTTGTCAAGG+TGG - chr3_2:70836897-70836916 Msa0421800:intron 40.0%
AATTCATAACTTAGTCCCGG+TGG - chr3_2:70836931-70836950 Msa0421800:intron 40.0%
ATTCATAACTTAGTCCCGGT+GGG - chr3_2:70836932-70836951 Msa0421800:intron 40.0%
GAAGAGGATAACTTAGAGAG+AGG + chr3_2:70837373-70837392 None:intergenic 40.0%
! TTTTCGCTGCAGAACCGTTA+AGG - chr3_2:70834585-70834604 Msa0421800:three_prime_UTR 45.0%
GTGTATCGTTACGAGAGCAA+CGG + chr3_2:70834642-70834661 None:intergenic 45.0%
TCATCGTGAAAAGACGACGA+CGG + chr3_2:70834664-70834683 None:intergenic 45.0%
TTCAACACAGCTTCTTGAGG+AGG + chr3_2:70834694-70834713 None:intergenic 45.0%
TCCTCAAGAAGCTGTGTTGA+AGG - chr3_2:70834693-70834712 Msa0421800:exon 45.0%
!! GCAGAGGTATCTAAGACAGA+AGG - chr3_2:70834801-70834820 Msa0421800:intron 45.0%
GGTTATTGGAGGAACTGTCA+CGG - chr3_2:70834848-70834867 Msa0421800:intron 45.0%
GCACCTATTTATTTAGGGGC+GGG - chr3_2:70835268-70835287 Msa0421800:intron 45.0%
CACCTATTTATTTAGGGGCG+GGG - chr3_2:70835269-70835288 Msa0421800:intron 45.0%
AACCCCGCCCCTAAATAAAT+AGG + chr3_2:70835274-70835293 None:intergenic 45.0%
CTCAGGACCTTGCATTATGA+AGG - chr3_2:70835954-70835973 Msa0421800:intron 45.0%
TCAGCGTCCTTCATAATGCA+AGG + chr3_2:70835964-70835983 None:intergenic 45.0%
AAAGACTAGAGGAGGAGGTT+TGG - chr3_2:70836159-70836178 Msa0421800:intron 45.0%
AATGGAAAGATCAGTCACCC+GGG + chr3_2:70836189-70836208 None:intergenic 45.0%
GGAGAAGGCTAAAGACTGTT+GGG + chr3_2:70836265-70836284 None:intergenic 45.0%
TTCTCCACTTGCTCTCTAGA+TGG - chr3_2:70836415-70836434 Msa0421800:intron 45.0%
ATGCTCGTACACACATTGAG+AGG - chr3_2:70836573-70836592 Msa0421800:intron 45.0%
CAAACATGGGACTCAGTGAA+AGG + chr3_2:70836815-70836834 None:intergenic 45.0%
CTTTCACTGAGTCCCATGTT+TGG - chr3_2:70836813-70836832 Msa0421800:intron 45.0%
TCGAAGGAAATCACAGTGCA+TGG + chr3_2:70837119-70837138 None:intergenic 45.0%
! TGAAGCACAAGGTATCAGCA+AGG - chr3_2:70837263-70837282 Msa0421800:intron 45.0%
! GAAGCACAAGGTATCAGCAA+GGG - chr3_2:70837264-70837283 Msa0421800:intron 45.0%
! AAGCACAAGGTATCAGCAAG+GGG - chr3_2:70837265-70837284 Msa0421800:intron 45.0%
!! TTGGACTGGCCCAATGTTTA+CGG + chr3_2:70837302-70837321 None:intergenic 45.0%
TTGACATGCCTGCTTTCTAG+TGG - chr3_2:70837554-70837573 Msa0421800:CDS 45.0%
! ATGCCTGCTTTCTAGTGGTT+AGG - chr3_2:70837559-70837578 Msa0421800:CDS 45.0%
ATCTACGGCTCAGTGATTCA+GGG + chr3_2:70837755-70837774 None:intergenic 45.0%
!! TATAATCATAAAATAATTAT+TGG + chr3_2:70837691-70837710 None:intergenic 5.0%
GCTTCGTTCAGCGATGATTG+TGG - chr3_2:70834495-70834514 Msa0421800:three_prime_UTR 50.0%
GTGAAAGGGACGAGCCTTAA+CGG + chr3_2:70834602-70834621 None:intergenic 50.0%
GCCTTCAACACAGCTTCTTG+AGG + chr3_2:70834697-70834716 None:intergenic 50.0%
GCTGTGTTGAAGGCCATTTC+AGG - chr3_2:70834703-70834722 Msa0421800:exon 50.0%
CAGTGAACCCCCTAACAGTT+GGG + chr3_2:70835093-70835112 None:intergenic 50.0%
GTTAGGGGGTTCACTGCAAT+AGG - chr3_2:70835097-70835116 Msa0421800:intron 50.0%
GGGTTCACTGCAATAGGAAC+CGG - chr3_2:70835103-70835122 Msa0421800:intron 50.0%
TTCACTGCAATAGGAACCGG+TGG - chr3_2:70835106-70835125 Msa0421800:intron 50.0%
TCACTGCAATAGGAACCGGT+GGG - chr3_2:70835107-70835126 Msa0421800:intron 50.0%
GGATGACTTCGTGCAAGCTA+TGG - chr3_2:70835129-70835148 Msa0421800:intron 50.0%
CGGTGGCTTGACATAGTTTG+TGG + chr3_2:70835827-70835846 None:intergenic 50.0%
AACTATGTCAAGCCACCGTC+AGG - chr3_2:70835829-70835848 Msa0421800:intron 50.0%
! GGGACTAGTAATCACGACTC+AGG - chr3_2:70835937-70835956 Msa0421800:intron 50.0%
TCAAGGGATGCAGCAAAGTC+TGG - chr3_2:70836113-70836132 Msa0421800:intron 50.0%
AAGACTGTTGGGAGAGTCCA+GGG + chr3_2:70836254-70836273 None:intergenic 50.0%
AAAGACTGTTGGGAGAGTCC+AGG + chr3_2:70836255-70836274 None:intergenic 50.0%
GGGAGAAGGCTAAAGACTGT+TGG + chr3_2:70836266-70836285 None:intergenic 50.0%
TCTAACTTGGGGATGGGAGA+AGG + chr3_2:70836280-70836299 None:intergenic 50.0%
GAGGTTAGAATCAGCTCCAC+CGG + chr3_2:70836386-70836405 None:intergenic 50.0%
GGTTCCATCTAGAGAGCAAG+TGG + chr3_2:70836422-70836441 None:intergenic 50.0%
!! TGACATCAGGTTGGATGCAC+TGG + chr3_2:70836461-70836480 None:intergenic 50.0%
AGTGCATCCAACCTGATGTC+AGG - chr3_2:70836460-70836479 Msa0421800:intron 50.0%
! CATGGAATTTGGAGGCACAC+TGG + chr3_2:70836486-70836505 None:intergenic 50.0%
TGTGTACGAGCATGCGTAAG+CGG + chr3_2:70836566-70836585 None:intergenic 50.0%
! TTTTGCACCGAATGGCCAAC+AGG - chr3_2:70836838-70836857 Msa0421800:intron 50.0%
GCACATTCCTGTTGGCCATT+CGG + chr3_2:70836848-70836867 None:intergenic 50.0%
CGTACTCTTCTGCACAAAGC+AGG + chr3_2:70836877-70836896 None:intergenic 50.0%
TCGCTGGAAACAACTTGGAC+TGG + chr3_2:70837316-70837335 None:intergenic 50.0%
CCTGTTCGCTGGAAACAACT+TGG + chr3_2:70837321-70837340 None:intergenic 50.0%
! CCAAGTTGTTTCCAGCGAAC+AGG - chr3_2:70837318-70837337 Msa0421800:intron 50.0%
AGGCAGAAATACCTGTTCGC+TGG + chr3_2:70837332-70837351 None:intergenic 50.0%
ATGCTATGAGGAGGGATGAC+AGG - chr3_2:70837476-70837495 Msa0421800:intron 50.0%
CAGCCTAACCACTAGAAAGC+AGG + chr3_2:70837565-70837584 None:intergenic 50.0%
CATCTACGGCTCAGTGATTC+AGG + chr3_2:70837756-70837775 None:intergenic 50.0%
CGTCCCTTTCACCGTGGTAA+TGG - chr3_2:70834610-70834629 Msa0421800:three_prime_UTR 55.0%
GCAGTGAACCCCCTAACAGT+TGG + chr3_2:70835094-70835113 None:intergenic 55.0%
CACTGCAATAGGAACCGGTG+GGG - chr3_2:70835108-70835127 Msa0421800:intron 55.0%
TTGCACGAAGTCATCCCCAC+CGG + chr3_2:70835125-70835144 None:intergenic 55.0%
AATCCAACAGCCCATTCCCC+AGG - chr3_2:70835171-70835190 Msa0421800:intron 55.0%
!! ATACCTGGGGAATGGGCTGT+TGG + chr3_2:70835177-70835196 None:intergenic 55.0%
TCTGCGTAGTTTAGCTGCCG+TGG - chr3_2:70835695-70835714 Msa0421800:intron 55.0%
!! AGGAGGAGGTTTGGTTTGCC+CGG - chr3_2:70836168-70836187 Msa0421800:intron 55.0%
CTTTGGTTGCTGGTGCGTGT+AGG + chr3_2:70836223-70836242 None:intergenic 55.0%
CACGCACCAGCAACCAAAGT+CGG - chr3_2:70836224-70836243 Msa0421800:intron 55.0%
ACAGAACACTCCCGAGTCGT+CGG - chr3_2:70836340-70836359 Msa0421800:intron 55.0%
ATGGACTCTTCCGACGACTC+GGG + chr3_2:70836353-70836372 None:intergenic 55.0%
CATGGACTCTTCCGACGACT+CGG + chr3_2:70836354-70836373 None:intergenic 55.0%
AGAGTCCATGTCCGTCTAGC+CGG - chr3_2:70836364-70836383 Msa0421800:intron 55.0%
! AATCAGCTCCACCGGCTAGA+CGG + chr3_2:70836378-70836397 None:intergenic 55.0%
TGGAACCTTCGTAGAGAGCC+TGG - chr3_2:70836435-70836454 Msa0421800:intron 55.0%
! ACACTGGCCTGACATCAGGT+TGG + chr3_2:70836470-70836489 None:intergenic 55.0%
ATGCGTAAGCGGGCATGTAC+AGG + chr3_2:70836555-70836574 None:intergenic 55.0%
GTGTACGAGCATGCGTAAGC+GGG + chr3_2:70836565-70836584 None:intergenic 55.0%
! ACAGGGGAGTGTGAAGCACA+AGG - chr3_2:70837252-70837271 Msa0421800:intron 55.0%
AAGGCTCGTCCCTTTCACCG+TGG - chr3_2:70834604-70834623 Msa0421800:three_prime_UTR 60.0%
GCGTAGTTTAGCTGCCGTGG+TGG - chr3_2:70835698-70835717 Msa0421800:intron 60.0%
!! GGAGGAGGTTTGGTTTGCCC+GGG - chr3_2:70836169-70836188 Msa0421800:intron 60.0%
GGTTGCTGGTGCGTGTAGGT+AGG + chr3_2:70836219-70836238 None:intergenic 60.0%
ACTGTTGGGAGAGTCCAGGG+CGG + chr3_2:70836251-70836270 None:intergenic 60.0%
ACTGGCCAGGCTCTCTACGA+AGG + chr3_2:70836443-70836462 None:intergenic 60.0%
!! TCAGGTTGGATGCACTGGCC+AGG + chr3_2:70836456-70836475 None:intergenic 60.0%
! AGGCACACTGGCCTGACATC+AGG + chr3_2:70836474-70836493 None:intergenic 60.0%
GGCGGTCCGACTTTGGTTGC+TGG + chr3_2:70836233-70836252 None:intergenic 65.0%
CAACCAAAGTCGGACCGCCC+TGG - chr3_2:70836234-70836253 Msa0421800:intron 65.0%
AGTCCAGGGCGGTCCGACTT+TGG + chr3_2:70836240-70836259 None:intergenic 65.0%
GTCCATGTCCGTCTAGCCGG+TGG - chr3_2:70836367-70836386 Msa0421800:intron 65.0%
! CTCCACCGGCTAGACGGACA+TGG + chr3_2:70836372-70836391 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 70834388 70837840 70834388 ID=Msa0421800;Name=Msa0421800
chr3_2 mRNA 70834388 70837840 70834388 ID=Msa0421800-mRNA-1;Parent=Msa0421800;Name=Msa0421800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|1|1|1|1|1|5|324|201
chr3_2 exon 70834388 70834768 70834388 ID=Msa0421800-mRNA-1:exon:17141;Parent=Msa0421800-mRNA-1
chr3_2 exon 70834889 70834972 70834889 ID=Msa0421800-mRNA-1:exon:17140;Parent=Msa0421800-mRNA-1
chr3_2 exon 70837036 70837149 70837036 ID=Msa0421800-mRNA-1:exon:17139;Parent=Msa0421800-mRNA-1
chr3_2 exon 70837320 70837423 70837320 ID=Msa0421800-mRNA-1:exon:17138;Parent=Msa0421800-mRNA-1
chr3_2 exon 70837504 70837840 70837504 ID=Msa0421800-mRNA-1:exon:17137;Parent=Msa0421800-mRNA-1
chr3_2 five_prime_UTR 70837751 70837840 70837751 ID=Msa0421800-mRNA-1:five_prime_utr;Parent=Msa0421800-mRNA-1
chr3_2 CDS 70837504 70837750 70837504 ID=Msa0421800-mRNA-1:cds;Parent=Msa0421800-mRNA-1
chr3_2 CDS 70837320 70837423 70837320 ID=Msa0421800-mRNA-1:cds;Parent=Msa0421800-mRNA-1
chr3_2 CDS 70837036 70837149 70837036 ID=Msa0421800-mRNA-1:cds;Parent=Msa0421800-mRNA-1
chr3_2 CDS 70834889 70834972 70834889 ID=Msa0421800-mRNA-1:cds;Parent=Msa0421800-mRNA-1
chr3_2 CDS 70834712 70834768 70834712 ID=Msa0421800-mRNA-1:cds;Parent=Msa0421800-mRNA-1
chr3_2 three_prime_UTR 70834388 70834711 70834388 ID=Msa0421800-mRNA-1:three_prime_utr;Parent=Msa0421800-mRNA-1
Gene Sequence

>Msa0421800

ATGGCGTGCAGGAGCATGCTTCGTTCAGCGATGATTGTGGAACCATTGCAATTCCAATTCCAATTCAAACCTTTACTTTTTAATTTGAATCCGAATAAGAGAGGAGGTTTTCGCTGCAGAACCGTTAAGGCTCGTCCCTTTCACCGTGGTAATGGAATTCTCCGTTGCTCTCGTAACGATACACCGTCGTCGTCTTTTCACGATGATCAAGGTCCTCCTCAAGAAGCTGTGTTGAAGGCCATTTCAGAGGTATCTAAGACAGAAGGAAGGATAGGACAAACTACGAATATGGTTATTGGAGGAACTGTCACGGATGATTCTACTAATGAATGGGTTGCTTTAGACAAAAAGGTGAATACATACCCAACTGTTAGGGGGTTCACTGCAATAGGAACCGGTGGGGATGACTTCGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTAATCCAACAGCCCATTCCCCAGGGGAGTGTGAAGCACAAGGTATCAGCAAGGGGCAAATATGTGTCCGTAAACATTGGGCCAGTCCAAGTTGTTTCCAGCGAACAGGTCCAAGCTGTATATAATGCTATGAGGAGGGATGACAGGATGAAATACTTTTTATAG

Protein sequence

>Msa0421800

MACRSMLRSAMIVEPLQFQFQFKPLLFNLNPNKRGGFRCRTVKARPFHRGNGILRCSRNDTPSSSFHDDQGPPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEWVALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSVNIGPVQVVSSEQVQAVYNAMRRDDRMKYFL*