AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467800 MtrunA17_Chr3g0122461 96.585 205 3 1 1 201 1 205 5.84e-148 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467800 AT1G27385.1 75.000 148 31 1 54 201 61 202 1.05e-76 229
Msa0467800 AT1G27385.3 74.324 148 32 1 54 201 61 202 7.56e-76 228
Msa0467800 AT1G27385.2 74.324 148 31 2 54 201 61 201 4.29e-74 222
Msa0467800 AT1G27385.4 74.324 148 31 2 54 201 61 201 1.96e-73 223

Find 72 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATAATTAAGTGCAAAAT+TGG 0.188824 3_3:-69237635 Msa0467800:three_prime_UTR
CATCTACGGCTCCGTGATTC+AGG 0.209396 3_3:+69237301 None:intergenic
TATAATCATAAAATAATTAT+TGG 0.243829 3_3:+69237562 None:intergenic
TTGGACTGGCCCAATGTTTA+CGG 0.293987 3_3:+69238030 None:intergenic
GCTGTGTTGAAGGCCATTTC+AGG 0.308532 3_3:-69240604 Msa0467800:intron
CGAAAACCTCCTCTCTTATT+CGG 0.315627 3_3:+69240739 None:intergenic
ATGGGTTGCTTTAGACAAAA+AGG 0.324861 3_3:-69240397 Msa0467800:intron
GTAAAGGTTTGAATTGGAAT+TGG 0.326338 3_3:+69240776 None:intergenic
CAAACTACGAATATGGTTAT+TGG 0.349962 3_3:-69240450 Msa0467800:CDS
TGAATACATACCCAACTGTT+AGG 0.369842 3_3:-69240208 Msa0467800:CDS
GATAGGACAAACTACGAATA+TGG 0.387015 3_3:-69240457 Msa0467800:CDS
TCCTCAAGAAGCTGTGTTGA+AGG 0.392868 3_3:-69240614 Msa0467800:CDS
TTTCTTTGGCACAACAGATT+GGG 0.397029 3_3:-69237241 Msa0467800:three_prime_UTR
TGCAATTAAGAAAATGAAAC+AGG 0.399689 3_3:+69237277 None:intergenic
CCAAGTTGTTTCCAGCGAAC+AGG 0.415316 3_3:-69238011 Msa0467800:intron
ATAAAACATACCTGGGGAAT+GGG 0.419641 3_3:+69240107 None:intergenic
CGTCCCTTTCACCGTGGTAA+TGG 0.421777 3_3:-69240697 Msa0467800:CDS
AGGCATGTCAATATATCAAT+TGG 0.427642 3_3:+69237707 None:intergenic
GTGAAAGGGACGAGCCTTAA+CGG 0.448927 3_3:+69240708 None:intergenic
CCTGTTCGCTGGAAACAACT+TGG 0.461413 3_3:+69238011 None:intergenic
CGGATGATTCTACTAATGAA+TGG 0.463843 3_3:-69240416 Msa0467800:CDS
GAAGATGGAATTACCTGAAA+TGG 0.471281 3_3:+69240591 None:intergenic
CATAAAACATACCTGGGGAA+TGG 0.489276 3_3:+69240106 None:intergenic
GAATACATACCCAACTGTTA+GGG 0.490009 3_3:-69240207 Msa0467800:CDS
ATGCTATGAGGAGGGATGAC+AGG 0.511597 3_3:-69237779 Msa0467800:CDS
AATATGTGTCCGTAAACATT+GGG 0.511909 3_3:-69238039 Msa0467800:CDS
AAATATGTGTCCGTAAACAT+TGG 0.512566 3_3:-69238040 Msa0467800:CDS
GGATGATTCTACTAATGAAT+GGG 0.513339 3_3:-69240415 Msa0467800:CDS
AATTCCATTACCACGGTGAA+AGG 0.519265 3_3:+69240693 None:intergenic
GGGTTCACTGCAATAGGAAC+CGG 0.532077 3_3:-69240185 Msa0467800:CDS
AGGCAGAAATACCTGTTCGC+TGG 0.537747 3_3:+69238000 None:intergenic
TCGCTGGAAACAACTTGGAC+TGG 0.541126 3_3:+69238016 None:intergenic
GCCTTCAACACAGCTTCTTG+AGG 0.541456 3_3:+69240613 None:intergenic
ATACCTGGGGAATGGGCTGT+TGG 0.541945 3_3:+69240114 None:intergenic
ATGCCTGCTTTCTAGTGGTT+AGG 0.549502 3_3:-69237690 Msa0467800:three_prime_UTR
ATTCCATTACCACGGTGAAA+GGG 0.551205 3_3:+69240694 None:intergenic
TCATAGCATTATATACAGCT+TGG 0.551996 3_3:+69237793 None:intergenic
CAGCCTAACCACTAGAAAGC+AGG 0.556389 3_3:+69237687 None:intergenic
ATCTACGGCTCCGTGATTCA+GGG 0.557161 3_3:+69237302 None:intergenic
TTCACTGCAATAGGAACCGG+TGG 0.562823 3_3:-69240182 Msa0467800:CDS
GGATGACTTCGTGCAAGCTA+TGG 0.570776 3_3:-69240159 Msa0467800:CDS
TCTAAGACAGAAGGAAGGAT+AGG 0.570938 3_3:-69240474 Msa0467800:CDS
GCTTCGTTCAGCGATGATTG+TGG 0.572314 3_3:-69240812 Msa0467800:CDS
TTGACATGCCTGCTTTCTAG+TGG 0.576997 3_3:-69237695 Msa0467800:three_prime_UTR
AATTGGAATTGGAATTGCAA+TGG 0.580064 3_3:+69240787 None:intergenic
AATCCAACAGCCCATTCCCC+AGG 0.580170 3_3:-69240117 Msa0467800:intron
ACTACGAATATGGTTATTGG+AGG 0.589546 3_3:-69240447 Msa0467800:CDS
TTCAACACAGCTTCTTGAGG+AGG 0.596405 3_3:+69240616 None:intergenic
GCAGAGGTATCTAAGACAGA+AGG 0.603237 3_3:-69240483 Msa0467800:intron
CTGTATATAATGCTATGAGG+AGG 0.611383 3_3:-69237788 Msa0467800:CDS
TGTATATAATGCTATGAGGA+GGG 0.612053 3_3:-69237787 Msa0467800:CDS
AATTTGAATCCGAATAAGAG+AGG 0.614217 3_3:-69240748 Msa0467800:CDS
AAGCTGTATATAATGCTATG+AGG 0.615037 3_3:-69237791 Msa0467800:CDS
AATTGAAAATCCCTGAATCA+CGG 0.616610 3_3:-69237312 Msa0467800:three_prime_UTR
AAAATGAAACAGGACATCTA+CGG 0.620359 3_3:+69237287 None:intergenic
TTGAATCCGAATAAGAGAGG+AGG 0.625769 3_3:-69240745 Msa0467800:CDS
GAAGCACAAGGTATCAGCAA+GGG 0.626581 3_3:-69238065 Msa0467800:CDS
TGAAGCACAAGGTATCAGCA+AGG 0.632271 3_3:-69238066 Msa0467800:CDS
AAGCACAAGGTATCAGCAAG+GGG 0.636193 3_3:-69238064 Msa0467800:CDS
AGGTATCTAAGACAGAAGGA+AGG 0.645582 3_3:-69240479 Msa0467800:CDS
ACTTAATTATAACGATATCG+TGG 0.647194 3_3:+69237645 None:intergenic
GGTTATTGGAGGAACTGTCA+CGG 0.650079 3_3:-69240436 Msa0467800:CDS
AATACATACCCAACTGTTAG+GGG 0.655407 3_3:-69240206 Msa0467800:CDS
ACAGGGGAGTGTGAAGCACA+AGG 0.655631 3_3:-69238077 Msa0467800:intron
TTGCACGAAGTCATCCCCAC+CGG 0.656764 3_3:+69240166 None:intergenic
CACTGCAATAGGAACCGGTG+GGG 0.661994 3_3:-69240180 Msa0467800:CDS
AACGGAGAATTCCATTACCA+CGG 0.679173 3_3:+69240686 None:intergenic
GTGTATCGTTACGAGAGCAA+CGG 0.696668 3_3:+69240668 None:intergenic
ATACATACCCAACTGTTAGG+GGG 0.700615 3_3:-69240205 Msa0467800:CDS
TCACTGCAATAGGAACCGGT+GGG 0.708899 3_3:-69240181 Msa0467800:CDS
AAGGCTCGTCCCTTTCACCG+TGG 0.745511 3_3:-69240703 Msa0467800:CDS
TCATCGTGAAAAGACGACGA+CGG 0.780619 3_3:+69240646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTTAATACAATTCT+TGG + chr3_3:69238665-69238684 None:intergenic 10.0%
!!! ATTATAGACATTATTATTTT+AGG - chr3_3:69240609-69240628 Msa0467800:CDS 10.0%
!!! TTATAGACATTATTATTTTA+GGG - chr3_3:69240610-69240629 Msa0467800:CDS 10.0%
!! ACCAAATATTATTCTTATAA+AGG - chr3_3:69238276-69238295 Msa0467800:intron 15.0%
!! ACCTTTATAAGAATAATATT+TGG + chr3_3:69238280-69238299 None:intergenic 15.0%
!! TAAAAAGTAAAGGTTTGAAT+TGG + chr3_3:69237387-69237406 None:intergenic 20.0%
!! GGATTCAAATTAAAAAGTAA+AGG + chr3_3:69237397-69237416 None:intergenic 20.0%
!! AATTAAATCAAATGTGAAGA+TGG + chr3_3:69237581-69237600 None:intergenic 20.0%
!!! TTAATAGTGTTGTTTTTGAT+TGG - chr3_3:69237639-69237658 Msa0467800:three_prime_UTR 20.0%
!!! TCAATACTTTTTCAGAAATT+TGG - chr3_3:69238098-69238117 Msa0467800:intron 20.0%
!!! CTAAATATTTTTGGCTTATA+AGG - chr3_3:69238625-69238644 Msa0467800:intron 20.0%
!! TTGAATTAACACTATTATGA+AGG - chr3_3:69238775-69238794 Msa0467800:intron 20.0%
!!! AGAGACTTTTTTTTTTAACA+AGG - chr3_3:69239430-69239449 Msa0467800:intron 20.0%
!! TCAAAAGTTAGTATTTAGAA+GGG - chr3_3:69239509-69239528 Msa0467800:intron 20.0%
!!! AGCCTAAAATTTTCTTATTT+GGG + chr3_3:69239597-69239616 None:intergenic 20.0%
!!! TAGCCTAAAATTTTCTTATT+TGG + chr3_3:69239598-69239617 None:intergenic 20.0%
!! TGTGATCATTAACAATAATT+TGG + chr3_3:69239867-69239886 None:intergenic 20.0%
!!! ATGAACAGTTTTCATTAATA+TGG - chr3_3:69239993-69240012 Msa0467800:intron 20.0%
!!! TAGTATGTTAGATTTTGTAT+AGG - chr3_3:69240413-69240432 Msa0467800:CDS 20.0%
!! GTTATAATTAAGTGCAAAAT+TGG - chr3_3:69240519-69240538 Msa0467800:intron 20.0%
!!! TAAAAAGCAGTTTTCTTTTA+TGG - chr3_3:69240733-69240752 Msa0467800:CDS 20.0%
!! TACATGCACTATAAAATAAA+GGG + chr3_3:69240817-69240836 None:intergenic 20.0%
!! TTACATGCACTATAAAATAA+AGG + chr3_3:69240818-69240837 None:intergenic 20.0%
!!! AAAACACAGATTTTTCGATA+AGG + chr3_3:69237256-69237275 None:intergenic 25.0%
! AAAGAGACAGAAAAAAACAA+TGG - chr3_3:69237306-69237325 Msa0467800:three_prime_UTR 25.0%
!!! TGTTGTTTTTGATTGGTTAA+TGG - chr3_3:69237646-69237665 Msa0467800:three_prime_UTR 25.0%
! TTGATACATAAAACATACCT+GGG + chr3_3:69238057-69238076 None:intergenic 25.0%
! TAAGTTGCACCTATTTATTT+GGG - chr3_3:69238128-69238147 Msa0467800:intron 25.0%
!!! TATTTGTTGTTATTACCGTA+AGG - chr3_3:69238306-69238325 Msa0467800:intron 25.0%
! TAGACACAAAATTAACCTTA+CGG + chr3_3:69238324-69238343 None:intergenic 25.0%
!! CTGTATCTGCTAAATATTTT+TGG - chr3_3:69238616-69238635 Msa0467800:intron 25.0%
!!! AATATTTTTGGCTTATAAGG+TGG - chr3_3:69238628-69238647 Msa0467800:intron 25.0%
! ATGATAATATGTAAACCTGA+CGG + chr3_3:69238716-69238735 None:intergenic 25.0%
!! TTCATAAGAAACTTCTAGAA+GGG + chr3_3:69238887-69238906 None:intergenic 25.0%
! TTTCATAAGAAACTTCTAGA+AGG + chr3_3:69238888-69238907 None:intergenic 25.0%
! TTTACTGTATCCATATTCAA+GGG - chr3_3:69238926-69238945 Msa0467800:intron 25.0%
!!! TCTTTTAAAAGGTCTAACTT+GGG + chr3_3:69239123-69239142 None:intergenic 25.0%
!!! TATAATTTTCAAGGACTTCA+TGG + chr3_3:69239335-69239354 None:intergenic 25.0%
! TGAAGTCCTTGAAAATTATA+TGG - chr3_3:69239335-69239354 Msa0467800:intron 25.0%
!!! CTTTTTTTTTTAACAAGGAG+AGG - chr3_3:69239435-69239454 Msa0467800:intron 25.0%
! GTCAAAAGTTAGTATTTAGA+AGG - chr3_3:69239508-69239527 Msa0467800:intron 25.0%
!! CTCCCAAATAAGAAAATTTT+AGG - chr3_3:69239592-69239611 Msa0467800:intron 25.0%
! TAAAATTCATAACTTAGTCC+TGG - chr3_3:69239756-69239775 Msa0467800:intron 25.0%
! AATGTTAACATATTGCTTAC+AGG - chr3_3:69240059-69240078 Msa0467800:intron 25.0%
! ATGTTAACATATTGCTTACA+GGG - chr3_3:69240060-69240079 Msa0467800:intron 25.0%
! GGAAAAGAAAAAAACAAACA+AGG + chr3_3:69240177-69240196 None:intergenic 25.0%
! AAAAACAGAAAACATAGAAG+AGG + chr3_3:69240214-69240233 None:intergenic 25.0%
!!! TTTTCTGTTTTTTCTGATCA+TGG - chr3_3:69240222-69240241 Msa0467800:intron 25.0%
! TACAACAAGATTCAATATCA+AGG + chr3_3:69240331-69240350 None:intergenic 25.0%
!!! TGAATCTTGTTGTATTTTTC+AGG - chr3_3:69240337-69240356 Msa0467800:intron 25.0%
! ACTTAATTATAACGATATCG+TGG + chr3_3:69240512-69240531 None:intergenic 25.0%
!! ATGGTAATAATTCCCTTTTA+TGG - chr3_3:69240752-69240771 Msa0467800:CDS 25.0%
! TGCAATTAAGAAAATGAAAC+AGG + chr3_3:69240880-69240899 None:intergenic 25.0%
!! TCATTTTCTTAATTGCAGAT+TGG - chr3_3:69240883-69240902 Msa0467800:five_prime_UTR 25.0%
!!! AGATTGGTTTGTTTTTTCTT+TGG - chr3_3:69240899-69240918 Msa0467800:five_prime_UTR 25.0%
AATTGGAATTGGAATTGCAA+TGG + chr3_3:69237370-69237389 None:intergenic 30.0%
GTAAAGGTTTGAATTGGAAT+TGG + chr3_3:69237381-69237400 None:intergenic 30.0%
AATTTGAATCCGAATAAGAG+AGG - chr3_3:69237406-69237425 Msa0467800:intron 30.0%
CAAACTACGAATATGGTTAT+TGG - chr3_3:69237704-69237723 Msa0467800:three_prime_UTR 30.0%
GGATGATTCTACTAATGAAT+GGG - chr3_3:69237739-69237758 Msa0467800:three_prime_UTR 30.0%
TGATACATAAAACATACCTG+GGG + chr3_3:69238056-69238075 None:intergenic 30.0%
GTTGATACATAAAACATACC+TGG + chr3_3:69238058-69238077 None:intergenic 30.0%
!! TTTTTCAGAAATTTGGCCAT+TGG - chr3_3:69238105-69238124 Msa0467800:intron 30.0%
GTAAGTTGCACCTATTTATT+TGG - chr3_3:69238127-69238146 Msa0467800:intron 30.0%
AAGTTGCACCTATTTATTTG+GGG - chr3_3:69238129-69238148 Msa0467800:intron 30.0%
AGGTTTACATATTATCATCG+AGG - chr3_3:69238718-69238737 Msa0467800:intron 30.0%
! CACAATAGAAGACTTTTAAG+CGG - chr3_3:69238818-69238837 Msa0467800:intron 30.0%
AAACCATTTACAGCTCATAT+TGG + chr3_3:69238857-69238876 None:intergenic 30.0%
GTTTACTGTATCCATATTCA+AGG - chr3_3:69238925-69238944 Msa0467800:intron 30.0%
TGTCCTTATAAAAAGACTAG+AGG - chr3_3:69238979-69238998 Msa0467800:intron 30.0%
!! CTTTTAAAAGGTCTAACTTG+GGG + chr3_3:69239122-69239141 None:intergenic 30.0%
!! GTCTTTTAAAAGGTCTAACT+TGG + chr3_3:69239124-69239143 None:intergenic 30.0%
! GAGAAGCCATATAATTTTCA+AGG + chr3_3:69239344-69239363 None:intergenic 30.0%
!! TACTAACTTTTGACTGTTGT+TGG + chr3_3:69239502-69239521 None:intergenic 30.0%
!!! AATTTTAGGCTAGCCTTTAA+TGG - chr3_3:69239606-69239625 Msa0467800:intron 30.0%
GGAAACTGAAATACCATTAA+AGG + chr3_3:69239622-69239641 None:intergenic 30.0%
TCTACATATCCTTATTGTGT+GGG + chr3_3:69239820-69239839 None:intergenic 30.0%
ACAATAAGGATATGTAGAGT+TGG - chr3_3:69239822-69239841 Msa0467800:intron 30.0%
TGTTAACATATTGCTTACAG+GGG - chr3_3:69240061-69240080 Msa0467800:intron 30.0%
AAATATGTGTCCGTAAACAT+TGG - chr3_3:69240114-69240133 Msa0467800:intron 30.0%
AATATGTGTCCGTAAACATT+GGG - chr3_3:69240115-69240134 Msa0467800:intron 30.0%
TCATAGCATTATATACAGCT+TGG + chr3_3:69240364-69240383 None:intergenic 30.0%
AAGCTGTATATAATGCTATG+AGG - chr3_3:69240363-69240382 Msa0467800:intron 30.0%
TGTATATAATGCTATGAGGA+GGG - chr3_3:69240367-69240386 Msa0467800:intron 30.0%
AGGCATGTCAATATATCAAT+TGG + chr3_3:69240450-69240469 None:intergenic 30.0%
!! TATTTTAGGGAAATGCTAAC+CGG - chr3_3:69240623-69240642 Msa0467800:CDS 30.0%
ACTGGTTAAGGATATGAAAA+AGG - chr3_3:69240658-69240677 Msa0467800:CDS 30.0%
TGGTTAAGCATACCATAAAA+GGG + chr3_3:69240767-69240786 None:intergenic 30.0%
AATTGAAAATCCCTGAATCA+CGG - chr3_3:69240842-69240861 Msa0467800:exon 30.0%
AAAATGAAACAGGACATCTA+CGG + chr3_3:69240870-69240889 None:intergenic 30.0%
GAAGATGGAATTACCTGAAA+TGG + chr3_3:69237566-69237585 None:intergenic 35.0%
GATAGGACAAACTACGAATA+TGG - chr3_3:69237697-69237716 Msa0467800:three_prime_UTR 35.0%
ACTACGAATATGGTTATTGG+AGG - chr3_3:69237707-69237726 Msa0467800:three_prime_UTR 35.0%
CGGATGATTCTACTAATGAA+TGG - chr3_3:69237738-69237757 Msa0467800:three_prime_UTR 35.0%
! ATGGGTTGCTTTAGACAAAA+AGG - chr3_3:69237757-69237776 Msa0467800:exon 35.0%
TACTCTGTTGTGTGTTACAT+AGG - chr3_3:69237923-69237942 Msa0467800:intron 35.0%
TGAATACATACCCAACTGTT+AGG - chr3_3:69237946-69237965 Msa0467800:intron 35.0%
GAATACATACCCAACTGTTA+GGG - chr3_3:69237947-69237966 Msa0467800:intron 35.0%
AATACATACCCAACTGTTAG+GGG - chr3_3:69237948-69237967 Msa0467800:intron 35.0%
ATAAAACATACCTGGGGAAT+GGG + chr3_3:69238050-69238069 None:intergenic 35.0%
AAATAGGTGCAACTTACCAA+TGG + chr3_3:69238124-69238143 None:intergenic 35.0%
AGTTGCACCTATTTATTTGG+GGG - chr3_3:69238130-69238149 Msa0467800:intron 35.0%
ATCTTACATGCTGTGTAACT+TGG - chr3_3:69238355-69238374 Msa0467800:intron 35.0%
ATTGACGTGATGTTTATTGC+TGG - chr3_3:69238390-69238409 Msa0467800:intron 35.0%
ATAATATGTAAACCTGACGG+TGG + chr3_3:69238713-69238732 None:intergenic 35.0%
TTGCCAATATGAGCTGTAAA+TGG - chr3_3:69238851-69238870 Msa0467800:intron 35.0%
!! GAAACTTCTAGAAGGGATTT+TGG + chr3_3:69238880-69238899 None:intergenic 35.0%
!! CCTCCTCTAGTCTTTTTATA+AGG + chr3_3:69238985-69239004 None:intergenic 35.0%
CCTTATAAAAAGACTAGAGG+AGG - chr3_3:69238982-69239001 Msa0467800:intron 35.0%
TATAAAAAGACTAGAGGAGG+AGG - chr3_3:69238985-69239004 Msa0467800:intron 35.0%
!! AGACCTTTTAAAAGACGAGA+CGG - chr3_3:69239128-69239147 Msa0467800:intron 35.0%
TTCAAGGACTTCATGGAATT+TGG + chr3_3:69239328-69239347 None:intergenic 35.0%
ACGTATCGTAACAGTTGTTA+AGG - chr3_3:69239722-69239741 Msa0467800:intron 35.0%
TATCGTAACAGTTGTTAAGG+CGG - chr3_3:69239725-69239744 Msa0467800:intron 35.0%
AATTCATAACTTAGTCCTGG+TGG - chr3_3:69239759-69239778 Msa0467800:intron 35.0%
ATTCATAACTTAGTCCTGGT+GGG - chr3_3:69239760-69239779 Msa0467800:intron 35.0%
! AAATTTTATCATCACCCACC+AGG + chr3_3:69239777-69239796 None:intergenic 35.0%
! ATTGTGTGGGTGTTCTTTTA+CGG + chr3_3:69239807-69239826 None:intergenic 35.0%
AAAAGAACACCCACACAATA+AGG - chr3_3:69239808-69239827 Msa0467800:intron 35.0%
CTCTACATATCCTTATTGTG+TGG + chr3_3:69239821-69239840 None:intergenic 35.0%
!! GATTTCCTTCGAGTTGTTAT+AGG - chr3_3:69239952-69239971 Msa0467800:intron 35.0%
! CTTTTCCTATAACAACTCGA+AGG + chr3_3:69239960-69239979 None:intergenic 35.0%
GGTACATCTACACTTACATT+TGG - chr3_3:69240014-69240033 Msa0467800:intron 35.0%
ACATCTACACTTACATTTGG+TGG - chr3_3:69240017-69240036 Msa0467800:intron 35.0%
CTGTATATAATGCTATGAGG+AGG - chr3_3:69240366-69240385 Msa0467800:intron 35.0%
CTGGTTAAGCATACCATAAA+AGG + chr3_3:69240768-69240787 None:intergenic 35.0%
! TTTTCTTTGGCACAACAGAT+TGG - chr3_3:69240912-69240931 Msa0467800:five_prime_UTR 35.0%
TTTCTTTGGCACAACAGATT+GGG - chr3_3:69240913-69240932 Msa0467800:five_prime_UTR 35.0%
AGAAAAAAACAATGGCGTGC+AGG - chr3_3:69237314-69237333 Msa0467800:three_prime_UTR 40.0%
TTGAATCCGAATAAGAGAGG+AGG - chr3_3:69237409-69237428 Msa0467800:intron 40.0%
CGAAAACCTCCTCTCTTATT+CGG + chr3_3:69237418-69237437 None:intergenic 40.0%
ATTCCATTACCACGGTGAAA+GGG + chr3_3:69237463-69237482 None:intergenic 40.0%
AATTCCATTACCACGGTGAA+AGG + chr3_3:69237464-69237483 None:intergenic 40.0%
AACGGAGAATTCCATTACCA+CGG + chr3_3:69237471-69237490 None:intergenic 40.0%
! TCGTCTTTTCACGATGATCA+AGG - chr3_3:69237514-69237533 Msa0467800:intron 40.0%
! TGATTGGTTAATGGTTGCAG+AGG - chr3_3:69237655-69237674 Msa0467800:three_prime_UTR 40.0%
! AGGTATCTAAGACAGAAGGA+AGG - chr3_3:69237675-69237694 Msa0467800:three_prime_UTR 40.0%
! TCTAAGACAGAAGGAAGGAT+AGG - chr3_3:69237680-69237699 Msa0467800:three_prime_UTR 40.0%
ATACATACCCAACTGTTAGG+GGG - chr3_3:69237949-69237968 Msa0467800:intron 40.0%
CATAAAACATACCTGGGGAA+TGG + chr3_3:69238051-69238070 None:intergenic 40.0%
! TGACTTTAGAAGTCCAGTGT+AGG - chr3_3:69238534-69238553 Msa0467800:intron 40.0%
ATGCAATCTTAGAACCACCA+CGG + chr3_3:69238588-69238607 None:intergenic 40.0%
! GCTTGACATAGTTTGTGGTT+TGG + chr3_3:69238691-69238710 None:intergenic 40.0%
TTATGAAGGACGCTGATCAT+AGG - chr3_3:69238789-69238808 Msa0467800:intron 40.0%
TTTGCTGCATCCCTTGAATA+TGG + chr3_3:69238939-69238958 None:intergenic 40.0%
! AGGTAGGAGTACATTATGGA+AGG + chr3_3:69239034-69239053 None:intergenic 40.0%
! GTGTAGGTAGGAGTACATTA+TGG + chr3_3:69239038-69239057 None:intergenic 40.0%
AAAAGGTCTAACTTGGGGAT+GGG + chr3_3:69239117-69239136 None:intergenic 40.0%
TAAAAGGTCTAACTTGGGGA+TGG + chr3_3:69239118-69239137 None:intergenic 40.0%
! TCACCGTCTCGTCTTTTAAA+AGG + chr3_3:69239134-69239153 None:intergenic 40.0%
AAGTGGAGAAGCAAAACATG+AGG + chr3_3:69239236-69239255 None:intergenic 40.0%
TTCTCCACTTGCTCTGTATA+TGG - chr3_3:69239246-69239265 Msa0467800:intron 40.0%
AAGGACTTCATGGAATTTGG+AGG + chr3_3:69239325-69239344 None:intergenic 40.0%
CGGTGCAAAATTCCAAACAT+GGG + chr3_3:69239656-69239675 None:intergenic 40.0%
TCGGTGCAAAATTCCAAACA+TGG + chr3_3:69239657-69239676 None:intergenic 40.0%
!! GTTTGGAATTTTGCACCGAA+TGG - chr3_3:69239658-69239677 Msa0467800:intron 40.0%
! GGTAAAAAGCACATTCCTGT+TGG + chr3_3:69239684-69239703 None:intergenic 40.0%
ATATCAAGGTATATTCGCCC+AGG + chr3_3:69240317-69240336 None:intergenic 40.0%
AAATAAAGGGTCCTGCTAAC+CGG + chr3_3:69240804-69240823 None:intergenic 40.0%
! TTTTCGCTGCAGAACCGTTA+AGG - chr3_3:69237432-69237451 Msa0467800:intron 45.0%
GTGTATCGTTACGAGAGCAA+CGG + chr3_3:69237489-69237508 None:intergenic 45.0%
TCATCGTGAAAAGACGACGA+CGG + chr3_3:69237511-69237530 None:intergenic 45.0%
TTCAACACAGCTTCTTGAGG+AGG + chr3_3:69237541-69237560 None:intergenic 45.0%
TCCTCAAGAAGCTGTGTTGA+AGG - chr3_3:69237540-69237559 Msa0467800:intron 45.0%
!! GCAGAGGTATCTAAGACAGA+AGG - chr3_3:69237671-69237690 Msa0467800:three_prime_UTR 45.0%
GGTTATTGGAGGAACTGTCA+CGG - chr3_3:69237718-69237737 Msa0467800:three_prime_UTR 45.0%
TGCACCTATTTATTTGGGGG+CGG - chr3_3:69238133-69238152 Msa0467800:intron 45.0%
GATCAAATTGCAGCCTACAC+TGG + chr3_3:69238550-69238569 None:intergenic 45.0%
! GACTTTTAAGCGGCTACTCA+TGG - chr3_3:69238828-69238847 Msa0467800:intron 45.0%
AAAGACTAGAGGAGGAGGTT+TGG - chr3_3:69238990-69239009 Msa0467800:intron 45.0%
TATGGAAGGATCAGTCACCA+GGG + chr3_3:69239020-69239039 None:intergenic 45.0%
TTATGGAAGGATCAGTCACC+AGG + chr3_3:69239021-69239040 None:intergenic 45.0%
GGAGAAGGCTAAAGACTGTT+GGG + chr3_3:69239096-69239115 None:intergenic 45.0%
GGTTCCATATACAGAGCAAG+TGG + chr3_3:69239253-69239272 None:intergenic 45.0%
ATGCTCGTACACACATTGAG+AGG - chr3_3:69239404-69239423 Msa0467800:intron 45.0%
CAAACATGGGACTCAGTGAA+AGG + chr3_3:69239643-69239662 None:intergenic 45.0%
CTTTCACTGAGTCCCATGTT+TGG - chr3_3:69239641-69239660 Msa0467800:intron 45.0%
TCGAAGGAAATCACAGTGCA+TGG + chr3_3:69239944-69239963 None:intergenic 45.0%
! TGAAGCACAAGGTATCAGCA+AGG - chr3_3:69240088-69240107 Msa0467800:intron 45.0%
! GAAGCACAAGGTATCAGCAA+GGG - chr3_3:69240089-69240108 Msa0467800:intron 45.0%
! AAGCACAAGGTATCAGCAAG+GGG - chr3_3:69240090-69240109 Msa0467800:intron 45.0%
!! TTGGACTGGCCCAATGTTTA+CGG + chr3_3:69240127-69240146 None:intergenic 45.0%
GAAGAGGATCACTTAGAGAG+AGG + chr3_3:69240198-69240217 None:intergenic 45.0%
TGTCTCCATGCAAATGATCC+TGG - chr3_3:69240296-69240315 Msa0467800:intron 45.0%
GTCTCCATGCAAATGATCCT+GGG - chr3_3:69240297-69240316 Msa0467800:intron 45.0%
TTGACATGCCTGCTTTCTAG+TGG - chr3_3:69240459-69240478 Msa0467800:CDS 45.0%
! ATGCCTGCTTTCTAGTGGTT+AGG - chr3_3:69240464-69240483 Msa0467800:CDS 45.0%
!! TATAATCATAAAATAATTAT+TGG + chr3_3:69240595-69240614 None:intergenic 5.0%
GCTTCGTTCAGCGATGATTG+TGG - chr3_3:69237342-69237361 Msa0467800:intron 50.0%
GTGAAAGGGACGAGCCTTAA+CGG + chr3_3:69237449-69237468 None:intergenic 50.0%
GCCTTCAACACAGCTTCTTG+AGG + chr3_3:69237544-69237563 None:intergenic 50.0%
GCTGTGTTGAAGGCCATTTC+AGG - chr3_3:69237550-69237569 Msa0467800:three_prime_UTR 50.0%
CAGTGAACCCCCTAACAGTT+GGG + chr3_3:69237959-69237978 None:intergenic 50.0%
GTTAGGGGGTTCACTGCAAT+AGG - chr3_3:69237963-69237982 Msa0467800:intron 50.0%
GGGTTCACTGCAATAGGAAC+CGG - chr3_3:69237969-69237988 Msa0467800:intron 50.0%
TTCACTGCAATAGGAACCGG+TGG - chr3_3:69237972-69237991 Msa0467800:intron 50.0%
TCACTGCAATAGGAACCGGT+GGG - chr3_3:69237973-69237992 Msa0467800:intron 50.0%
GGATGACTTCGTGCAAGCTA+TGG - chr3_3:69237995-69238014 Msa0467800:intron 50.0%
GCACCTATTTATTTGGGGGC+GGG - chr3_3:69238134-69238153 Msa0467800:intron 50.0%
CACCTATTTATTTGGGGGCG+GGG - chr3_3:69238135-69238154 Msa0467800:intron 50.0%
CGGTGGCTTGACATAGTTTG+TGG + chr3_3:69238696-69238715 None:intergenic 50.0%
AACTATGTCAAGCCACCGTC+AGG - chr3_3:69238698-69238717 Msa0467800:intron 50.0%
AAGGGATGCAGCAAAGTCTG+TGG - chr3_3:69238944-69238963 Msa0467800:intron 50.0%
AAGACTGTTGGGAGAGTCCA+GGG + chr3_3:69239085-69239104 None:intergenic 50.0%
AAAGACTGTTGGGAGAGTCC+AGG + chr3_3:69239086-69239105 None:intergenic 50.0%
GGGAGAAGGCTAAAGACTGT+TGG + chr3_3:69239097-69239116 None:intergenic 50.0%
TCTAACTTGGGGATGGGAGA+AGG + chr3_3:69239111-69239130 None:intergenic 50.0%
ACAGAACACTCCTGAGTCGT+CGG - chr3_3:69239171-69239190 Msa0467800:intron 50.0%
ATGGAATCTTCCGACGACTC+AGG + chr3_3:69239184-69239203 None:intergenic 50.0%
AGATTCCATGTCCCTCTAGC+CGG - chr3_3:69239195-69239214 Msa0467800:intron 50.0%
GAGGTTAGAATCAGCTCCAC+CGG + chr3_3:69239217-69239236 None:intergenic 50.0%
!! TGACATCAGGTTGGATGCAC+TGG + chr3_3:69239292-69239311 None:intergenic 50.0%
AGTGCATCCAACCTGATGTC+AGG - chr3_3:69239291-69239310 Msa0467800:intron 50.0%
! CATGGAATTTGGAGGCACAC+TGG + chr3_3:69239317-69239336 None:intergenic 50.0%
TGTGTACGAGCATGCGTAAG+CGG + chr3_3:69239397-69239416 None:intergenic 50.0%
! TTTTGCACCGAATGGCCAAC+AGG - chr3_3:69239666-69239685 Msa0467800:intron 50.0%
GCACATTCCTGTTGGCCATT+CGG + chr3_3:69239676-69239695 None:intergenic 50.0%
CGTACTCTTCTGCACAAAGC+AGG + chr3_3:69239705-69239724 None:intergenic 50.0%
TCGCTGGAAACAACTTGGAC+TGG + chr3_3:69240141-69240160 None:intergenic 50.0%
CCTGTTCGCTGGAAACAACT+TGG + chr3_3:69240146-69240165 None:intergenic 50.0%
! CCAAGTTGTTTCCAGCGAAC+AGG - chr3_3:69240143-69240162 Msa0467800:CDS 50.0%
AGGCAGAAATACCTGTTCGC+TGG + chr3_3:69240157-69240176 None:intergenic 50.0%
TTCGCCCAGGATCATTTGCA+TGG + chr3_3:69240304-69240323 None:intergenic 50.0%
ATGCTATGAGGAGGGATGAC+AGG - chr3_3:69240375-69240394 Msa0467800:intron 50.0%
CAGCCTAACCACTAGAAAGC+AGG + chr3_3:69240470-69240489 None:intergenic 50.0%
ATATCCTTAACCAGTGCCCC+GGG + chr3_3:69240653-69240672 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG + chr3_3:69240654-69240673 None:intergenic 50.0%
ATCTACGGCTCCGTGATTCA+GGG + chr3_3:69240855-69240874 None:intergenic 50.0%
CGTCCCTTTCACCGTGGTAA+TGG - chr3_3:69237457-69237476 Msa0467800:intron 55.0%
GCAGTGAACCCCCTAACAGT+TGG + chr3_3:69237960-69237979 None:intergenic 55.0%
CACTGCAATAGGAACCGGTG+GGG - chr3_3:69237974-69237993 Msa0467800:intron 55.0%
TTGCACGAAGTCATCCCCAC+CGG + chr3_3:69237991-69238010 None:intergenic 55.0%
AATCCAACAGCCCATTCCCC+AGG - chr3_3:69238037-69238056 Msa0467800:CDS 55.0%
!! ATACCTGGGGAATGGGCTGT+TGG + chr3_3:69238043-69238062 None:intergenic 55.0%
GTCCCCGCCCCCAAATAAAT+AGG + chr3_3:69238140-69238159 None:intergenic 55.0%
TCTGCGTAGTTTAGCTGCCG+TGG - chr3_3:69238568-69238587 Msa0467800:intron 55.0%
CTTTGGTTGCTGGTGCGTGT+AGG + chr3_3:69239054-69239073 None:intergenic 55.0%
CACGCACCAGCAACCAAAGT+CGG - chr3_3:69239055-69239074 Msa0467800:intron 55.0%
! AATCAGCTCCACCGGCTAGA+GGG + chr3_3:69239209-69239228 None:intergenic 55.0%
TGGAACCTTCGTAGAGAGCC+TGG - chr3_3:69239266-69239285 Msa0467800:intron 55.0%
! ACACTGGCCTGACATCAGGT+TGG + chr3_3:69239301-69239320 None:intergenic 55.0%
ATGCGTAAGCGGGCATGTAC+AGG + chr3_3:69239386-69239405 None:intergenic 55.0%
GTGTACGAGCATGCGTAAGC+GGG + chr3_3:69239396-69239415 None:intergenic 55.0%
! ACAGGGGAGTGTGAAGCACA+AGG - chr3_3:69240077-69240096 Msa0467800:intron 55.0%
TATCCTTAACCAGTGCCCCG+GGG + chr3_3:69240652-69240671 None:intergenic 55.0%
GGTATGCTTAACCAGTGCCC+CGG - chr3_3:69240773-69240792 Msa0467800:CDS 55.0%
GTATGCTTAACCAGTGCCCC+GGG - chr3_3:69240774-69240793 Msa0467800:CDS 55.0%
TATGCTTAACCAGTGCCCCG+GGG - chr3_3:69240775-69240794 Msa0467800:CDS 55.0%
CATCTACGGCTCCGTGATTC+AGG + chr3_3:69240856-69240875 None:intergenic 55.0%
AAGGCTCGTCCCTTTCACCG+TGG - chr3_3:69237451-69237470 Msa0467800:intron 60.0%
TTTATTTGGGGGCGGGGACG+CGG - chr3_3:69238141-69238160 Msa0467800:intron 60.0%
GCGTAGTTTAGCTGCCGTGG+TGG - chr3_3:69238571-69238590 Msa0467800:intron 60.0%
!! GGAGGAGGTTTGGTTTGCCC+TGG - chr3_3:69239000-69239019 Msa0467800:intron 60.0%
GGTTGCTGGTGCGTGTAGGT+AGG + chr3_3:69239050-69239069 None:intergenic 60.0%
ACTGTTGGGAGAGTCCAGGG+CGG + chr3_3:69239082-69239101 None:intergenic 60.0%
TTCCATGTCCCTCTAGCCGG+TGG - chr3_3:69239198-69239217 Msa0467800:intron 60.0%
! GAATCAGCTCCACCGGCTAG+AGG + chr3_3:69239210-69239229 None:intergenic 60.0%
ACTGGCCAGGCTCTCTACGA+AGG + chr3_3:69239274-69239293 None:intergenic 60.0%
!! TCAGGTTGGATGCACTGGCC+AGG + chr3_3:69239287-69239306 None:intergenic 60.0%
! AGGCACACTGGCCTGACATC+AGG + chr3_3:69239305-69239324 None:intergenic 60.0%
GAAATGCTAACCGGTGCCCC+CGG - chr3_3:69240632-69240651 Msa0467800:CDS 60.0%
AAATGCTAACCGGTGCCCCC+GGG - chr3_3:69240633-69240652 Msa0467800:CDS 60.0%
ATCCTTAACCAGTGCCCCGG+GGG + chr3_3:69240651-69240670 None:intergenic 60.0%
ATGCTTAACCAGTGCCCCGG+GGG - chr3_3:69240776-69240795 Msa0467800:CDS 60.0%
TTATTTGGGGGCGGGGACGC+GGG - chr3_3:69238142-69238161 Msa0467800:intron 65.0%
GGCGGTCCGACTTTGGTTGC+TGG + chr3_3:69239064-69239083 None:intergenic 65.0%
CAACCAAAGTCGGACCGCCC+TGG - chr3_3:69239065-69239084 Msa0467800:intron 65.0%
AGTCCAGGGCGGTCCGACTT+TGG + chr3_3:69239071-69239090 None:intergenic 65.0%
! CTCCACCGGCTAGAGGGACA+TGG + chr3_3:69239203-69239222 None:intergenic 65.0%
AATGCTAACCGGTGCCCCCG+GGG - chr3_3:69240634-69240653 Msa0467800:CDS 65.0%
TATTTGGGGGCGGGGACGCG+GGG - chr3_3:69238143-69238162 Msa0467800:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr3_3:69240646-69240665 Msa0467800:CDS 70.0%
TCCTGCTAACCGGTGCCCCC+GGG + chr3_3:69240794-69240813 None:intergenic 70.0%
GTCCTGCTAACCGGTGCCCC+CGG + chr3_3:69240795-69240814 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr3_3:69240782-69240801 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG - chr3_3:69240782-69240801 Msa0467800:CDS 75.0%
CCTGCTAACCGGTGCCCCCG+GGG + chr3_3:69240793-69240812 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr3_3:69240640-69240659 Msa0467800:CDS 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG + chr3_3:69240640-69240659 None:intergenic 80.0%
!!! CCCCGGGGGCACCGGTTAGC+AGG - chr3_3:69240790-69240809 Msa0467800:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69237236 69240940 69237236 ID=Msa0467800;Name=Msa0467800
chr3_3 mRNA 69237236 69240940 69237236 ID=Msa0467800-mRNA-1;Parent=Msa0467800;Name=Msa0467800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=89|1|1|1|0.8|0.66|6|329|201
chr3_3 exon 69237236 69237349 69237236 ID=Msa0467800-mRNA-1:exon:16384;Parent=Msa0467800-mRNA-1
chr3_3 exon 69237546 69237817 69237546 ID=Msa0467800-mRNA-1:exon:16383;Parent=Msa0467800-mRNA-1
chr3_3 exon 69238012 69238095 69238012 ID=Msa0467800-mRNA-1:exon:16382;Parent=Msa0467800-mRNA-1
chr3_3 exon 69240118 69240231 69240118 ID=Msa0467800-mRNA-1:exon:16381;Parent=Msa0467800-mRNA-1
chr3_3 exon 69240398 69240501 69240398 ID=Msa0467800-mRNA-1:exon:16380;Parent=Msa0467800-mRNA-1
chr3_3 exon 69240605 69240940 69240605 ID=Msa0467800-mRNA-1:exon:16379;Parent=Msa0467800-mRNA-1
chr3_3 five_prime_UTR 69240852 69240940 69240852 ID=Msa0467800-mRNA-1:five_prime_utr;Parent=Msa0467800-mRNA-1
chr3_3 CDS 69240605 69240851 69240605 ID=Msa0467800-mRNA-1:cds;Parent=Msa0467800-mRNA-1
chr3_3 CDS 69240398 69240501 69240398 ID=Msa0467800-mRNA-1:cds;Parent=Msa0467800-mRNA-1
chr3_3 CDS 69240118 69240231 69240118 ID=Msa0467800-mRNA-1:cds;Parent=Msa0467800-mRNA-1
chr3_3 CDS 69238012 69238095 69238012 ID=Msa0467800-mRNA-1:cds;Parent=Msa0467800-mRNA-1
chr3_3 CDS 69237761 69237817 69237761 ID=Msa0467800-mRNA-1:cds;Parent=Msa0467800-mRNA-1
chr3_3 three_prime_UTR 69237546 69237760 69237546 ID=Msa0467800-mRNA-1:three_prime_utr;Parent=Msa0467800-mRNA-1
chr3_3 three_prime_UTR 69237236 69237349 69237236 ID=Msa0467800-mRNA-1:three_prime_utr;Parent=Msa0467800-mRNA-1
Gene Sequence

>Msa0467800

ATGGCGTGCAGGAGCATGCTTCGTTCAGCGATGATTGTGGAACCATTGCAATTCCAATTCCAATTCAAACCTTTACTTTTTAATTTGAATCCGAATAAGAGAGGAGGTTTTCGCTGCAGAACCGTTAAGGCTCGTCCCTTTCACCGTGGTAATGGAATTCTCCGTTGCTCTCGTAACGATACACCGTCGTCGTCTTTTCACGATGATCAAGGTCCTCCTCAAGAAGCTGTGTTGAAGGCCATTTCAGAGGTATCTAAGACAGAAGGAAGGATAGGACAAACTACGAATATGGTTATTGGAGGAACTGTCACGGATGATTCTACTAATGAATGGGTTGCTTTAGACAAAAAGGTGAATACATACCCAACTGTTAGGGGGTTCACTGCAATAGGAACCGGTGGGGATGACTTCGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTAATCCAACAGCCCATTCCCCAGGGGAGTGTGAAGCACAAGGTATCAGCAAGGGGCAAATATGTGTCCGTAAACATTGGGCCAGTCCAAGTTGTTTCCAGCGAACAGGTCCAAGCTGTATATAATGCTATGAGGAGGGATGACAGGATGAAATACTTTTTATAG

Protein sequence

>Msa0467800

MACRSMLRSAMIVEPLQFQFQFKPLLFNLNPNKRGGFRCRTVKARPFHRGNGILRCSRNDTPSSSFHDDQGPPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEWVALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSVNIGPVQVVSSEQVQAVYNAMRRDDRMKYFL*