Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005360 | sp|Q93VM8|COPT5_ARATH | 55.102 | 147 | 61 | 3 | 71 | 213 | 1 | 146 | 6.69e-48 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0005360 | 0.813738 | 2.198190e-51 | -8.615850e-47 |
| Msa0005360 | Msa0017120 | 0.808810 | 2.579298e-50 | -8.615850e-47 |
| Msa0005360 | Msa0047470 | 0.802417 | 5.667193e-49 | -8.615850e-47 |
| Msa0005360 | Msa0053880 | 0.974266 | 7.450314e-138 | -8.615850e-47 |
| Msa0005360 | Msa0053900 | 0.804578 | 2.019261e-49 | -8.615850e-47 |
| Msa0005360 | Msa0099720 | 0.969616 | 2.192556e-130 | -8.615850e-47 |
| Msa0005360 | Msa0133670 | 0.800721 | 1.261942e-48 | -8.615850e-47 |
| Msa0005360 | Msa0133880 | 0.802897 | 4.511956e-49 | -8.615850e-47 |
| Msa0005360 | Msa0143080 | 0.810633 | 1.045987e-50 | -8.615850e-47 |
| Msa0005360 | Msa0146470 | 0.810184 | 1.307659e-50 | -8.615850e-47 |
| Msa0005360 | Msa0148360 | 0.805525 | 1.280040e-49 | -8.615850e-47 |
| Msa0005360 | Msa0185390 | 0.819030 | 1.438714e-52 | -8.615850e-47 |
| Msa0005360 | Msa0222070 | 0.801664 | 8.092704e-49 | -8.615850e-47 |
| Msa0005360 | Msa0236980 | 0.800846 | 1.189834e-48 | -8.615850e-47 |
| Msa0005360 | Msa0277530 | 0.815902 | 7.285045e-52 | -8.615850e-47 |
| Msa0005360 | Msa0306130 | 0.826436 | 2.715342e-54 | -8.615850e-47 |
| Msa0005360 | Msa0417150 | 0.803151 | 3.998083e-49 | -8.615850e-47 |
| Msa0005360 | Msa0421800 | 0.821772 | 3.380019e-53 | -8.615850e-47 |
| Msa0005360 | Msa0467800 | 0.827466 | 1.540030e-54 | -8.615850e-47 |
| Msa0005360 | Msa0467880 | 0.823923 | 1.066382e-53 | -8.615850e-47 |
| Msa0005360 | Msa0514260 | 0.818707 | 1.703412e-52 | -8.615850e-47 |
| Msa0005360 | Msa0524120 | 0.804213 | 2.406857e-49 | -8.615850e-47 |
| Msa0005360 | Msa0547050 | 0.809469 | 1.863190e-50 | -8.615850e-47 |
| Msa0005360 | Msa0560180 | 0.834262 | 3.318357e-56 | -8.615850e-47 |
| Msa0005360 | Msa0606060 | 0.807351 | 5.273285e-50 | -8.615850e-47 |
| Msa0005360 | Msa0638690 | 0.820058 | 8.383885e-53 | -8.615850e-47 |
| Msa0005360 | Msa0642650 | 0.813373 | 2.645406e-51 | -8.615850e-47 |
| Msa0005360 | Msa0654060 | 0.805505 | 1.292338e-49 | -8.615850e-47 |
| Msa0005360 | Msa0662850 | 0.815211 | 1.038278e-51 | -8.615850e-47 |
| Msa0005360 | Msa0681890 | 0.815744 | 7.903384e-52 | -8.615850e-47 |
| Msa0005360 | Msa0686610 | 0.808807 | 2.583589e-50 | -8.615850e-47 |
| Msa0005360 | Msa0739570 | 0.830043 | 3.666884e-55 | -8.615850e-47 |
| Msa0005360 | Msa0782330 | 0.821608 | 3.689329e-53 | -8.615850e-47 |
| Msa0005360 | Msa0860270 | 0.822200 | 2.690007e-53 | -8.615850e-47 |
| Msa0005360 | Msa0897390 | 0.800940 | 1.138409e-48 | -8.615850e-47 |
| Msa0005360 | Msa0900320 | 0.801689 | 7.997295e-49 | -8.615850e-47 |
| Msa0005360 | Msa0925160 | 0.803832 | 2.888524e-49 | -8.615850e-47 |
| Msa0005360 | Msa0958020 | 0.823803 | 1.137728e-53 | -8.615850e-47 |
| Msa0005360 | Msa0971860 | 0.810840 | 9.435013e-51 | -8.615850e-47 |
| Msa0005360 | Msa0978000 | 0.813101 | 3.034314e-51 | -8.615850e-47 |
| Msa0005360 | Msa0992570 | 0.812824 | 3.491177e-51 | -8.615850e-47 |
| Msa0005360 | Msa0992590 | 0.811093 | 8.316007e-51 | -8.615850e-47 |
| Msa0005360 | Msa1002040 | 0.806897 | 6.581646e-50 | -8.615850e-47 |
| Msa0005360 | Msa1024580 | 0.812968 | 3.245667e-51 | -8.615850e-47 |
| Msa0005360 | Msa1030280 | 0.804595 | 2.002853e-49 | -8.615850e-47 |
| Msa0005360 | Msa1123340 | 0.811521 | 6.714912e-51 | -8.615850e-47 |
| Msa0005360 | Msa1157160 | 0.800159 | 1.642550e-48 | -8.615850e-47 |
| Msa0005360 | Msa1166180 | 0.803162 | 3.976339e-49 | -8.615850e-47 |
| Msa0005360 | Msa1215210 | 0.808701 | 2.721426e-50 | -8.615850e-47 |
| Msa0005360 | Msa1316170 | 0.803767 | 2.979406e-49 | -8.615850e-47 |
| Msa0005360 | Msa1381130 | 0.810012 | 1.423949e-50 | -8.615850e-47 |
| Msa0005360 | Msa1412080 | 0.801406 | 9.141780e-49 | -8.615850e-47 |
| Msa0005360 | Msa1422750 | 0.811839 | 5.728197e-51 | -8.615850e-47 |
| Msa0005360 | Msa1444450 | 0.807331 | 5.325231e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005360 | MtrunA17_Chr1g0150721 | 95.105 | 143 | 6 | 1 | 71 | 213 | 1 | 142 | 7.37e-98 | 280 |
| Msa0005360 | MtrunA17_Chr3g0136431 | 59.060 | 149 | 49 | 4 | 71 | 213 | 1 | 143 | 2.11e-54 | 170 |
| Msa0005360 | MtrunA17_Chr4g0008841 | 31.034 | 145 | 71 | 4 | 72 | 208 | 13 | 136 | 9.37e-18 | 76.3 |
| Msa0005360 | MtrunA17_Chr7g0240831 | 31.298 | 131 | 69 | 2 | 72 | 202 | 22 | 131 | 1.04e-15 | 71.2 |
| Msa0005360 | MtrunA17_Chr7g0240841 | 31.298 | 131 | 69 | 2 | 72 | 202 | 22 | 131 | 1.04e-15 | 71.2 |
| Msa0005360 | MtrunA17_Chr7g0240861 | 30.000 | 140 | 76 | 4 | 72 | 209 | 27 | 146 | 1.14e-14 | 68.6 |
| Msa0005360 | MtrunA17_Chr4g0032581 | 29.921 | 127 | 67 | 3 | 75 | 201 | 35 | 139 | 2.45e-14 | 67.8 |
| Msa0005360 | MtrunA17_Chr3g0077241 | 50.746 | 67 | 31 | 2 | 3 | 68 | 1 | 66 | 2.79e-14 | 67.0 |
| Msa0005360 | MtrunA17_Chr4g0032571 | 28.455 | 123 | 66 | 2 | 71 | 193 | 27 | 127 | 3.25e-13 | 64.3 |
| Msa0005360 | MtrunA17_Chr4g0032291 | 31.579 | 133 | 66 | 4 | 75 | 203 | 46 | 157 | 3.50e-13 | 65.1 |
| Msa0005360 | MtrunA17_Chr1g0202341 | 49.254 | 67 | 33 | 1 | 2 | 68 | 13 | 78 | 2.76e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005360 | AT5G20650.1 | 55.102 | 147 | 61 | 3 | 71 | 213 | 1 | 146 | 6.80e-49 | 157 |
| Msa0005360 | AT2G26975.1 | 35.659 | 129 | 61 | 3 | 71 | 198 | 24 | 131 | 3.11e-20 | 83.6 |
| Msa0005360 | AT5G59040.1 | 34.375 | 128 | 63 | 2 | 71 | 198 | 29 | 135 | 5.32e-17 | 75.1 |
| Msa0005360 | AT2G37925.1 | 30.769 | 130 | 72 | 2 | 69 | 198 | 27 | 138 | 3.00e-14 | 67.8 |
| Msa0005360 | AT5G59030.1 | 27.778 | 144 | 80 | 3 | 75 | 212 | 45 | 170 | 3.02e-13 | 65.5 |
| Msa0005360 | AT3G46900.1 | 27.273 | 143 | 78 | 4 | 76 | 212 | 34 | 156 | 8.07e-13 | 64.3 |
Find 50 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACATTCTACCAATATT+TGG | 0.138215 | 1_1:+7873609 | Msa0005360:CDS |
| AATGGTAGTTCGTTATTTAT+AGG | 0.193209 | 1_1:-7871591 | None:intergenic |
| GAGATTCGGACTCCTCTTCT+TGG | 0.249119 | 1_1:+7873694 | Msa0005360:CDS |
| ACCAATATTTGGAAAATATT+CGG | 0.254322 | 1_1:+7873620 | Msa0005360:CDS |
| TCCTCTTCTTGGGTTGAATA+AGG | 0.262656 | 1_1:+7873705 | Msa0005360:CDS |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.274189 | 1_1:-7871622 | None:intergenic |
| TGACACTCTTATTTGATTCA+TGG | 0.286816 | 1_1:+7873533 | Msa0005360:CDS |
| TGATGCACATGACATTATAT+TGG | 0.315744 | 1_1:+7873500 | Msa0005360:CDS |
| GATGCACATGACATTATATT+GGG | 0.333053 | 1_1:+7873501 | Msa0005360:CDS |
| CGTTTGGTTACTTCTTGTTT+AGG | 0.336421 | 1_1:+7873851 | Msa0005360:CDS |
| ATTCATGGAAAACCAATTCA+TGG | 0.342364 | 1_1:+7873548 | Msa0005360:CDS |
| TTGGCTATAATGTCGTTTAA+TGG | 0.343696 | 1_1:+7873796 | Msa0005360:CDS |
| ATGTCAAGAGCAGCAGTTTC+AGG | 0.356702 | 1_1:-7871564 | None:intergenic |
| TTTGGTGTGAATTCTGCTAT+TGG | 0.364233 | 1_1:+7873760 | Msa0005360:CDS |
| ATTGTGGTTGGTTTAACGTT+TGG | 0.388729 | 1_1:+7873835 | Msa0005360:CDS |
| TAGATAACTCGTCCATGAAT+TGG | 0.393378 | 1_1:-7873560 | None:intergenic |
| AGATTCGGACTCCTCTTCTT+GGG | 0.397569 | 1_1:+7873695 | Msa0005360:CDS |
| TTGGTGTGAATTCTGCTATT+GGG | 0.404245 | 1_1:+7873761 | Msa0005360:CDS |
| ATTTGGAAAATATTCGGATT+CGG | 0.414816 | 1_1:+7873626 | Msa0005360:CDS |
| AGTCGCCGGTGCCGGAGATT+CGG | 0.431491 | 1_1:+7873680 | Msa0005360:CDS |
| TATTGGGTATTTGTTGATGT+TGG | 0.437573 | 1_1:+7873777 | Msa0005360:CDS |
| GAGGAACAAGGTTGTTGAAT+CGG | 0.457237 | 1_1:+7873732 | Msa0005360:CDS |
| AATGTCATGTGCATCATCTT+CGG | 0.473949 | 1_1:-7873493 | None:intergenic |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 1_1:+7871623 | Msa0005360:CDS |
| AGGCAAGGAATCACTACAAA+AGG | 0.478706 | 1_1:+7871664 | Msa0005360:CDS |
| TTGGGTTGAATAAGGTTTCG+AGG | 0.486516 | 1_1:+7873713 | Msa0005360:CDS |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 1_1:-7871621 | None:intergenic |
| AGAAGAGGAGTCCGAATCTC+CGG | 0.488903 | 1_1:-7873691 | None:intergenic |
| TGTGAACTCCATTCCTTCAA+AGG | 0.507742 | 1_1:-7871631 | None:intergenic |
| GAGGACGCAGTCGCCGGTGC+CGG | 0.509370 | 1_1:+7873672 | Msa0005360:CDS |
| GTGAACTCCATTCCTTCAAA+GGG | 0.518109 | 1_1:-7871630 | None:intergenic |
| TGAGGGGAGGACGCAGTCGC+CGG | 0.519658 | 1_1:+7873666 | Msa0005360:CDS |
| GTGATTCCTTGCCTCTTCGA+TGG | 0.520594 | 1_1:-7871655 | None:intergenic |
| ACCTTATTCAACCCAAGAAG+AGG | 0.545808 | 1_1:-7873706 | None:intergenic |
| GGAGTCCGAATCTCCGGCAC+CGG | 0.550760 | 1_1:-7873685 | None:intergenic |
| TCAGAGTGAAGAAGAGGCTG+CGG | 0.552122 | 1_1:+7873876 | Msa0005360:CDS |
| TGAAACTGCTGCTCTTGACA+TGG | 0.571525 | 1_1:+7871566 | Msa0005360:CDS |
| TAGGAGTCAGAGTGAAGAAG+AGG | 0.579273 | 1_1:+7873870 | Msa0005360:CDS |
| CACAAACTAAGCACATGCAC+AGG | 0.579857 | 1_1:-7873914 | None:intergenic |
| GAATAAGGTTTCGAGGAACA+AGG | 0.583225 | 1_1:+7873720 | Msa0005360:CDS |
| GCTATAATGTCGTTTAATGG+TGG | 0.610087 | 1_1:+7873799 | Msa0005360:CDS |
| TACATCATCAGAACAAGCCA+TGG | 0.620956 | 1_1:-7871541 | None:intergenic |
| TCACATCCATCGAAGAGGCA+AGG | 0.624553 | 1_1:+7871649 | Msa0005360:CDS |
| TCCTTCAAAGGGCTCTAAGG+GGG | 0.640867 | 1_1:-7871619 | None:intergenic |
| ATCATCAGAACAAGCCATGG+TGG | 0.649034 | 1_1:-7871538 | None:intergenic |
| CAGATTAAAGATGACAGATG+TGG | 0.651464 | 1_1:+7871506 | None:intergenic |
| ATGCACATGACATTATATTG+GGG | 0.668922 | 1_1:+7873502 | Msa0005360:CDS |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.673359 | 1_1:-7871620 | None:intergenic |
| GGAGTTCACATCCATCGAAG+AGG | 0.673976 | 1_1:+7871644 | Msa0005360:CDS |
| TGTGGATGAAGATTCCACCA+TGG | 0.737062 | 1_1:+7871524 | Msa0005360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATGAATAAATTTTTTA+AGG | + | chr1_1:7872832-7872851 | Msa0005360:intron | 10.0% |
| !!! | AAGTATGAATAAATTTTTTA+AGG | + | chr1_1:7872832-7872851 | Msa0005360:intron | 10.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | + | chr1_1:7871873-7871892 | Msa0005360:intron | 15.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | + | chr1_1:7871873-7871892 | Msa0005360:intron | 15.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | - | chr1_1:7872177-7872196 | None:intergenic | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | + | chr1_1:7872241-7872260 | Msa0005360:intron | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | + | chr1_1:7872278-7872297 | Msa0005360:intron | 20.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | - | chr1_1:7872323-7872342 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | + | chr1_1:7872552-7872571 | Msa0005360:intron | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | + | chr1_1:7873024-7873043 | Msa0005360:intron | 20.0% |
| !! | TAGATTAATTCAAAGTTTCA+AGG | - | chr1_1:7873192-7873211 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTTGATGTATC+TGG | - | chr1_1:7873228-7873247 | None:intergenic | 20.0% |
| !! | AGATACATCAACTAAAAAAA+AGG | + | chr1_1:7873227-7873246 | Msa0005360:intron | 20.0% |
| !!! | TATATATGTGTCTGTTTTTT+CGG | - | chr1_1:7873338-7873357 | None:intergenic | 20.0% |
| !! | ACCAATATTTGGAAAATATT+CGG | + | chr1_1:7873620-7873639 | Msa0005360:CDS | 20.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | - | chr1_1:7872177-7872196 | None:intergenic | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | + | chr1_1:7872241-7872260 | Msa0005360:intron | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | + | chr1_1:7872278-7872297 | Msa0005360:intron | 20.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | - | chr1_1:7872323-7872342 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | + | chr1_1:7872552-7872571 | Msa0005360:intron | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | + | chr1_1:7873024-7873043 | Msa0005360:intron | 20.0% |
| !! | TAGATTAATTCAAAGTTTCA+AGG | - | chr1_1:7873192-7873211 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTTGATGTATC+TGG | - | chr1_1:7873228-7873247 | None:intergenic | 20.0% |
| !! | AGATACATCAACTAAAAAAA+AGG | + | chr1_1:7873227-7873246 | Msa0005360:intron | 20.0% |
| !!! | TATATATGTGTCTGTTTTTT+CGG | - | chr1_1:7873338-7873357 | None:intergenic | 20.0% |
| !! | ACCAATATTTGGAAAATATT+CGG | + | chr1_1:7873620-7873639 | Msa0005360:CDS | 20.0% |
| ! | AATGGTAGTTCGTTATTTAT+AGG | - | chr1_1:7871594-7871613 | None:intergenic | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | + | chr1_1:7871761-7871780 | Msa0005360:intron | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | + | chr1_1:7871877-7871896 | Msa0005360:intron | 25.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | + | chr1_1:7871878-7871897 | Msa0005360:intron | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | - | chr1_1:7871926-7871945 | None:intergenic | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | + | chr1_1:7872043-7872062 | Msa0005360:intron | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | + | chr1_1:7872131-7872150 | Msa0005360:intron | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | + | chr1_1:7872208-7872227 | Msa0005360:intron | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | + | chr1_1:7872240-7872259 | Msa0005360:intron | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | + | chr1_1:7872286-7872305 | Msa0005360:intron | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | + | chr1_1:7872380-7872399 | Msa0005360:intron | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | + | chr1_1:7872423-7872442 | Msa0005360:intron | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | - | chr1_1:7872548-7872567 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | - | chr1_1:7872675-7872694 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | + | chr1_1:7872675-7872694 | Msa0005360:intron | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | + | chr1_1:7872676-7872695 | Msa0005360:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | + | chr1_1:7872699-7872718 | Msa0005360:intron | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | - | chr1_1:7872822-7872841 | None:intergenic | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | - | chr1_1:7872823-7872842 | None:intergenic | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | + | chr1_1:7873002-7873021 | Msa0005360:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | + | chr1_1:7873037-7873056 | Msa0005360:intron | 25.0% |
| !! | CTCAAATATTCGTACATTTT+CGG | + | chr1_1:7873062-7873081 | Msa0005360:intron | 25.0% |
| ! | AATGGTTAAAACATTTCATG+TGG | - | chr1_1:7873151-7873170 | None:intergenic | 25.0% |
| ! | AAAGTTTCAAGGTTATGTAA+GGG | - | chr1_1:7873181-7873200 | None:intergenic | 25.0% |
| ! | AATTAATCTAACTGTAACAC+AGG | + | chr1_1:7873202-7873221 | Msa0005360:intron | 25.0% |
| !!! | AGGTTGTTTTGAAAATTTCA+AGG | - | chr1_1:7873425-7873444 | None:intergenic | 25.0% |
| !! | TCCGAATATTTTCCAAATAT+TGG | - | chr1_1:7873624-7873643 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATATTCGGATT+CGG | + | chr1_1:7873626-7873645 | Msa0005360:CDS | 25.0% |
| ! | AATGGTAGTTCGTTATTTAT+AGG | - | chr1_1:7871594-7871613 | None:intergenic | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | + | chr1_1:7871761-7871780 | Msa0005360:intron | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | + | chr1_1:7871877-7871896 | Msa0005360:intron | 25.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | + | chr1_1:7871878-7871897 | Msa0005360:intron | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | - | chr1_1:7871926-7871945 | None:intergenic | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | + | chr1_1:7872043-7872062 | Msa0005360:intron | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | + | chr1_1:7872131-7872150 | Msa0005360:intron | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | + | chr1_1:7872208-7872227 | Msa0005360:intron | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | + | chr1_1:7872240-7872259 | Msa0005360:intron | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | + | chr1_1:7872286-7872305 | Msa0005360:intron | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | + | chr1_1:7872380-7872399 | Msa0005360:intron | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | + | chr1_1:7872423-7872442 | Msa0005360:intron | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | - | chr1_1:7872548-7872567 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | - | chr1_1:7872675-7872694 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | + | chr1_1:7872675-7872694 | Msa0005360:intron | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | + | chr1_1:7872676-7872695 | Msa0005360:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | + | chr1_1:7872699-7872718 | Msa0005360:intron | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | - | chr1_1:7872822-7872841 | None:intergenic | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | - | chr1_1:7872823-7872842 | None:intergenic | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | + | chr1_1:7873002-7873021 | Msa0005360:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | + | chr1_1:7873037-7873056 | Msa0005360:intron | 25.0% |
| !! | CTCAAATATTCGTACATTTT+CGG | + | chr1_1:7873062-7873081 | Msa0005360:intron | 25.0% |
| ! | AATGGTTAAAACATTTCATG+TGG | - | chr1_1:7873151-7873170 | None:intergenic | 25.0% |
| ! | AAAGTTTCAAGGTTATGTAA+GGG | - | chr1_1:7873181-7873200 | None:intergenic | 25.0% |
| ! | AATTAATCTAACTGTAACAC+AGG | + | chr1_1:7873202-7873221 | Msa0005360:intron | 25.0% |
| !!! | AGGTTGTTTTGAAAATTTCA+AGG | - | chr1_1:7873425-7873444 | None:intergenic | 25.0% |
| !! | TCCGAATATTTTCCAAATAT+TGG | - | chr1_1:7873624-7873643 | None:intergenic | 25.0% |
| ! | ATTTGGAAAATATTCGGATT+CGG | + | chr1_1:7873626-7873645 | Msa0005360:CDS | 25.0% |
| CTGTTCTTGATTTAGTAACA+CGG | - | chr1_1:7871725-7871744 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | + | chr1_1:7871726-7871745 | Msa0005360:intron | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | + | chr1_1:7871766-7871785 | Msa0005360:intron | 30.0% | |
| ! | CGAAGAAATTGACAACTTTT+AGG | - | chr1_1:7871948-7871967 | None:intergenic | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | - | chr1_1:7872038-7872057 | None:intergenic | 30.0% |
| AATTGTCAATTGAAGAATCC+TGG | + | chr1_1:7872185-7872204 | Msa0005360:intron | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | + | chr1_1:7872186-7872205 | Msa0005360:intron | 30.0% | |
| !!! | TTTTTGGTTGTGCTTTGTTA+TGG | + | chr1_1:7872396-7872415 | Msa0005360:intron | 30.0% |
| !! | TTTTGGTTGTGCTTTGTTAT+GGG | + | chr1_1:7872397-7872416 | Msa0005360:intron | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | - | chr1_1:7872488-7872507 | None:intergenic | 30.0% |
| GAAGCAATGATAGATACATA+TGG | + | chr1_1:7872698-7872717 | Msa0005360:intron | 30.0% | |
| GCAAGATAATCAATGGTTAA+AGG | + | chr1_1:7872724-7872743 | Msa0005360:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | + | chr1_1:7872973-7872992 | Msa0005360:intron | 30.0% | |
| CAAAGTTTCAAGGTTATGTA+AGG | - | chr1_1:7873182-7873201 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCCGATCTATGT+CGG | - | chr1_1:7873459-7873478 | None:intergenic | 30.0% |
| CATCATCTTCGGAAAAATTA+AGG | - | chr1_1:7873485-7873504 | None:intergenic | 30.0% | |
| TGATGCACATGACATTATAT+TGG | + | chr1_1:7873500-7873519 | Msa0005360:CDS | 30.0% | |
| GATGCACATGACATTATATT+GGG | + | chr1_1:7873501-7873520 | Msa0005360:CDS | 30.0% | |
| ATGCACATGACATTATATTG+GGG | + | chr1_1:7873502-7873521 | Msa0005360:CDS | 30.0% | |
| ! | TGACACTCTTATTTGATTCA+TGG | + | chr1_1:7873533-7873552 | Msa0005360:CDS | 30.0% |
| ATTCATGGAAAACCAATTCA+TGG | + | chr1_1:7873548-7873567 | Msa0005360:CDS | 30.0% | |
| TGCAACATTCTACCAATATT+TGG | + | chr1_1:7873609-7873628 | Msa0005360:CDS | 30.0% | |
| !!! | GTTGTTGAATCGGTTTTATT+TGG | + | chr1_1:7873742-7873761 | Msa0005360:CDS | 30.0% |
| ! | TATTGGGTATTTGTTGATGT+TGG | + | chr1_1:7873777-7873796 | Msa0005360:CDS | 30.0% |
| ! | TTGGCTATAATGTCGTTTAA+TGG | + | chr1_1:7873796-7873815 | Msa0005360:CDS | 30.0% |
| CTGTTCTTGATTTAGTAACA+CGG | - | chr1_1:7871725-7871744 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | + | chr1_1:7871726-7871745 | Msa0005360:intron | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | + | chr1_1:7871766-7871785 | Msa0005360:intron | 30.0% | |
| ! | CGAAGAAATTGACAACTTTT+AGG | - | chr1_1:7871948-7871967 | None:intergenic | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | - | chr1_1:7872038-7872057 | None:intergenic | 30.0% |
| AATTGTCAATTGAAGAATCC+TGG | + | chr1_1:7872185-7872204 | Msa0005360:intron | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | + | chr1_1:7872186-7872205 | Msa0005360:intron | 30.0% | |
| !!! | TTTTTGGTTGTGCTTTGTTA+TGG | + | chr1_1:7872396-7872415 | Msa0005360:intron | 30.0% |
| !! | TTTTGGTTGTGCTTTGTTAT+GGG | + | chr1_1:7872397-7872416 | Msa0005360:intron | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | - | chr1_1:7872488-7872507 | None:intergenic | 30.0% |
| GAAGCAATGATAGATACATA+TGG | + | chr1_1:7872698-7872717 | Msa0005360:intron | 30.0% | |
| GCAAGATAATCAATGGTTAA+AGG | + | chr1_1:7872724-7872743 | Msa0005360:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | + | chr1_1:7872973-7872992 | Msa0005360:intron | 30.0% | |
| CAAAGTTTCAAGGTTATGTA+AGG | - | chr1_1:7873182-7873201 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCCGATCTATGT+CGG | - | chr1_1:7873459-7873478 | None:intergenic | 30.0% |
| CATCATCTTCGGAAAAATTA+AGG | - | chr1_1:7873485-7873504 | None:intergenic | 30.0% | |
| TGATGCACATGACATTATAT+TGG | + | chr1_1:7873500-7873519 | Msa0005360:CDS | 30.0% | |
| GATGCACATGACATTATATT+GGG | + | chr1_1:7873501-7873520 | Msa0005360:CDS | 30.0% | |
| ATGCACATGACATTATATTG+GGG | + | chr1_1:7873502-7873521 | Msa0005360:CDS | 30.0% | |
| ! | TGACACTCTTATTTGATTCA+TGG | + | chr1_1:7873533-7873552 | Msa0005360:CDS | 30.0% |
| ATTCATGGAAAACCAATTCA+TGG | + | chr1_1:7873548-7873567 | Msa0005360:CDS | 30.0% | |
| TGCAACATTCTACCAATATT+TGG | + | chr1_1:7873609-7873628 | Msa0005360:CDS | 30.0% | |
| !!! | GTTGTTGAATCGGTTTTATT+TGG | + | chr1_1:7873742-7873761 | Msa0005360:CDS | 30.0% |
| ! | TATTGGGTATTTGTTGATGT+TGG | + | chr1_1:7873777-7873796 | Msa0005360:CDS | 30.0% |
| ! | TTGGCTATAATGTCGTTTAA+TGG | + | chr1_1:7873796-7873815 | Msa0005360:CDS | 30.0% |
| ! | AAAAGGTACGCTAAGAACAA+AGG | + | chr1_1:7871681-7871700 | Msa0005360:intron | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | + | chr1_1:7871699-7871718 | Msa0005360:intron | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | + | chr1_1:7871738-7871757 | Msa0005360:intron | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | + | chr1_1:7871765-7871784 | Msa0005360:intron | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | + | chr1_1:7871772-7871791 | Msa0005360:intron | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | + | chr1_1:7871830-7871849 | Msa0005360:intron | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | - | chr1_1:7872206-7872225 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | + | chr1_1:7872252-7872271 | Msa0005360:intron | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | + | chr1_1:7872262-7872281 | Msa0005360:intron | 35.0% |
| TGATGATTAACTCCAGTGAA+GGG | - | chr1_1:7872362-7872381 | None:intergenic | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | - | chr1_1:7872363-7872382 | None:intergenic | 35.0% | |
| ACCATTATCACAGATCAAGA+TGG | + | chr1_1:7872491-7872510 | Msa0005360:intron | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | - | chr1_1:7872495-7872514 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | - | chr1_1:7872596-7872615 | None:intergenic | 35.0% | |
| ! | ATGGGTTGCAAGATAATCAA+TGG | + | chr1_1:7872717-7872736 | Msa0005360:intron | 35.0% |
| TATACTCCATTCGAGCAAAA+TGG | + | chr1_1:7872750-7872769 | Msa0005360:intron | 35.0% | |
| AAATCATGACGTACATAAGC+AGG | - | chr1_1:7872779-7872798 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTCCTTGTTGTAA+CGG | - | chr1_1:7872922-7872941 | None:intergenic | 35.0% |
| GGATATAAAGTTCGCAAAAG+TGG | - | chr1_1:7872971-7872990 | None:intergenic | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | - | chr1_1:7872992-7873011 | None:intergenic | 35.0% | |
| ATTTCATGTGGTTCTTTGAC+TGG | - | chr1_1:7873139-7873158 | None:intergenic | 35.0% | |
| TTATGTAAGGGATTGCACAA+TGG | - | chr1_1:7873169-7873188 | None:intergenic | 35.0% | |
| TAATTATCCATAGATCCAGC+AGG | + | chr1_1:7873258-7873277 | Msa0005360:intron | 35.0% | |
| AATTATCCATAGATCCAGCA+GGG | + | chr1_1:7873259-7873278 | Msa0005360:intron | 35.0% | |
| ! | TTTAGGATGAAGGAAAAGCT+TGG | - | chr1_1:7873370-7873389 | None:intergenic | 35.0% |
| !! | TTTTTGTGTGTGTTTCTGCA+AGG | - | chr1_1:7873395-7873414 | None:intergenic | 35.0% |
| !! | TTCGTTTTTCCGACATAGAT+CGG | + | chr1_1:7873447-7873466 | Msa0005360:intron | 35.0% |
| AATGTCATGTGCATCATCTT+CGG | - | chr1_1:7873496-7873515 | None:intergenic | 35.0% | |
| TAGATAACTCGTCCATGAAT+TGG | - | chr1_1:7873563-7873582 | None:intergenic | 35.0% | |
| ! | ATTCGGTTGAAGTTTTTCTC+TGG | + | chr1_1:7873643-7873662 | Msa0005360:CDS | 35.0% |
| ! | TTGAAGTTTTTCTCTGGTGA+GGG | + | chr1_1:7873649-7873668 | Msa0005360:CDS | 35.0% |
| ! | TTTGGTGTGAATTCTGCTAT+TGG | + | chr1_1:7873760-7873779 | Msa0005360:CDS | 35.0% |
| TTGGTGTGAATTCTGCTATT+GGG | + | chr1_1:7873761-7873780 | Msa0005360:CDS | 35.0% | |
| ! | GCTATAATGTCGTTTAATGG+TGG | + | chr1_1:7873799-7873818 | Msa0005360:CDS | 35.0% |
| !! | GTTTAATGGTGGTGTTTTTG+TGG | + | chr1_1:7873810-7873829 | Msa0005360:CDS | 35.0% |
| !! | ATTGTGGTTGGTTTAACGTT+TGG | + | chr1_1:7873835-7873854 | Msa0005360:CDS | 35.0% |
| ! | CGTTTGGTTACTTCTTGTTT+AGG | + | chr1_1:7873851-7873870 | Msa0005360:CDS | 35.0% |
| ! | AAAAGGTACGCTAAGAACAA+AGG | + | chr1_1:7871681-7871700 | Msa0005360:intron | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | + | chr1_1:7871699-7871718 | Msa0005360:intron | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | + | chr1_1:7871738-7871757 | Msa0005360:intron | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | + | chr1_1:7871765-7871784 | Msa0005360:intron | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | + | chr1_1:7871772-7871791 | Msa0005360:intron | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | + | chr1_1:7871830-7871849 | Msa0005360:intron | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | - | chr1_1:7872206-7872225 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | + | chr1_1:7872252-7872271 | Msa0005360:intron | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | + | chr1_1:7872262-7872281 | Msa0005360:intron | 35.0% |
| TGATGATTAACTCCAGTGAA+GGG | - | chr1_1:7872362-7872381 | None:intergenic | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | - | chr1_1:7872363-7872382 | None:intergenic | 35.0% | |
| ACCATTATCACAGATCAAGA+TGG | + | chr1_1:7872491-7872510 | Msa0005360:intron | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | - | chr1_1:7872495-7872514 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | - | chr1_1:7872596-7872615 | None:intergenic | 35.0% | |
| ! | ATGGGTTGCAAGATAATCAA+TGG | + | chr1_1:7872717-7872736 | Msa0005360:intron | 35.0% |
| TATACTCCATTCGAGCAAAA+TGG | + | chr1_1:7872750-7872769 | Msa0005360:intron | 35.0% | |
| AAATCATGACGTACATAAGC+AGG | - | chr1_1:7872779-7872798 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTCCTTGTTGTAA+CGG | - | chr1_1:7872922-7872941 | None:intergenic | 35.0% |
| GGATATAAAGTTCGCAAAAG+TGG | - | chr1_1:7872971-7872990 | None:intergenic | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | - | chr1_1:7872992-7873011 | None:intergenic | 35.0% | |
| ATTTCATGTGGTTCTTTGAC+TGG | - | chr1_1:7873139-7873158 | None:intergenic | 35.0% | |
| TTATGTAAGGGATTGCACAA+TGG | - | chr1_1:7873169-7873188 | None:intergenic | 35.0% | |
| TAATTATCCATAGATCCAGC+AGG | + | chr1_1:7873258-7873277 | Msa0005360:intron | 35.0% | |
| AATTATCCATAGATCCAGCA+GGG | + | chr1_1:7873259-7873278 | Msa0005360:intron | 35.0% | |
| ! | TTTAGGATGAAGGAAAAGCT+TGG | - | chr1_1:7873370-7873389 | None:intergenic | 35.0% |
| !! | TTTTTGTGTGTGTTTCTGCA+AGG | - | chr1_1:7873395-7873414 | None:intergenic | 35.0% |
| !! | TTCGTTTTTCCGACATAGAT+CGG | + | chr1_1:7873447-7873466 | Msa0005360:intron | 35.0% |
| AATGTCATGTGCATCATCTT+CGG | - | chr1_1:7873496-7873515 | None:intergenic | 35.0% | |
| TAGATAACTCGTCCATGAAT+TGG | - | chr1_1:7873563-7873582 | None:intergenic | 35.0% | |
| ! | ATTCGGTTGAAGTTTTTCTC+TGG | + | chr1_1:7873643-7873662 | Msa0005360:CDS | 35.0% |
| ! | TTGAAGTTTTTCTCTGGTGA+GGG | + | chr1_1:7873649-7873668 | Msa0005360:CDS | 35.0% |
| ! | TTTGGTGTGAATTCTGCTAT+TGG | + | chr1_1:7873760-7873779 | Msa0005360:CDS | 35.0% |
| TTGGTGTGAATTCTGCTATT+GGG | + | chr1_1:7873761-7873780 | Msa0005360:CDS | 35.0% | |
| ! | GCTATAATGTCGTTTAATGG+TGG | + | chr1_1:7873799-7873818 | Msa0005360:CDS | 35.0% |
| !! | GTTTAATGGTGGTGTTTTTG+TGG | + | chr1_1:7873810-7873829 | Msa0005360:CDS | 35.0% |
| !! | ATTGTGGTTGGTTTAACGTT+TGG | + | chr1_1:7873835-7873854 | Msa0005360:CDS | 35.0% |
| ! | CGTTTGGTTACTTCTTGTTT+AGG | + | chr1_1:7873851-7873870 | Msa0005360:CDS | 35.0% |
| TACATCATCAGAACAAGCCA+TGG | - | chr1_1:7871544-7871563 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | - | chr1_1:7871624-7871643 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | - | chr1_1:7871633-7871652 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | - | chr1_1:7871634-7871653 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | + | chr1_1:7871664-7871683 | Msa0005360:CDS | 40.0% | |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | + | chr1_1:7871698-7871717 | Msa0005360:intron | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | + | chr1_1:7871773-7871792 | Msa0005360:intron | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | + | chr1_1:7871829-7871848 | Msa0005360:intron | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | + | chr1_1:7871834-7871853 | Msa0005360:intron | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | + | chr1_1:7872005-7872024 | Msa0005360:intron | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | + | chr1_1:7872050-7872069 | Msa0005360:intron | 40.0% | |
| !! | AGTGGTGGTGTTGATAACAT+TGG | + | chr1_1:7872068-7872087 | Msa0005360:intron | 40.0% |
| GCATTTCAAATGGATGCTGA+AGG | + | chr1_1:7872218-7872237 | Msa0005360:intron | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | + | chr1_1:7872455-7872474 | Msa0005360:intron | 40.0% | |
| ! | AGATGGTTCTATCACGTATG+CGG | + | chr1_1:7872508-7872527 | Msa0005360:intron | 40.0% |
| ATTCTTCTACGGTCGTACAT+AGG | - | chr1_1:7872664-7872683 | None:intergenic | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | - | chr1_1:7872759-7872778 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | + | chr1_1:7872785-7872804 | Msa0005360:intron | 40.0% |
| CATACTTTCACTTCTTTGGG+TGG | - | chr1_1:7872819-7872838 | None:intergenic | 40.0% | |
| ! | TGTGTCACAAACTTGCTCAA+TGG | - | chr1_1:7872878-7872897 | None:intergenic | 40.0% |
| ! | CTCTCTTTCCTTGTTGTAAC+GGG | - | chr1_1:7872921-7872940 | None:intergenic | 40.0% |
| GGAAATATTTGTCCCACAAG+AGG | + | chr1_1:7873083-7873102 | Msa0005360:intron | 40.0% | |
| ! | TTGTCCCACAAGAGGTTTTA+CGG | + | chr1_1:7873091-7873110 | Msa0005360:intron | 40.0% |
| TACTCCGTAAAACCTCTTGT+GGG | - | chr1_1:7873098-7873117 | None:intergenic | 40.0% | |
| TTACTCCGTAAAACCTCTTG+TGG | - | chr1_1:7873099-7873118 | None:intergenic | 40.0% | |
| AAATTTACGAAATGCCCTGC+TGG | - | chr1_1:7873276-7873295 | None:intergenic | 40.0% | |
| !! | TTTTTCGGAGTTACGACGTT+AGG | - | chr1_1:7873323-7873342 | None:intergenic | 40.0% |
| ! | TGTGTTTCTGCAAGGTGTTT+AGG | - | chr1_1:7873387-7873406 | None:intergenic | 40.0% |
| CTATGTCGGAAAAACGAACA+AGG | - | chr1_1:7873445-7873464 | None:intergenic | 40.0% | |
| ! | GTTGAAGTTTTTCTCTGGTG+AGG | + | chr1_1:7873648-7873667 | Msa0005360:CDS | 40.0% |
| ! | TGAAGTTTTTCTCTGGTGAG+GGG | + | chr1_1:7873650-7873669 | Msa0005360:CDS | 40.0% |
| !! | TCCTCTTCTTGGGTTGAATA+AGG | + | chr1_1:7873705-7873724 | Msa0005360:CDS | 40.0% |
| ACCTTATTCAACCCAAGAAG+AGG | - | chr1_1:7873709-7873728 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAATAAGGTTTCG+AGG | + | chr1_1:7873713-7873732 | Msa0005360:CDS | 40.0% |
| GAATAAGGTTTCGAGGAACA+AGG | + | chr1_1:7873720-7873739 | Msa0005360:CDS | 40.0% | |
| GAGGAACAAGGTTGTTGAAT+CGG | + | chr1_1:7873732-7873751 | Msa0005360:CDS | 40.0% | |
| !! | TGGTGTTTTTGTGGCTATTG+TGG | + | chr1_1:7873819-7873838 | Msa0005360:CDS | 40.0% |
| ! | GTTTTTGTGGCTATTGTGGT+TGG | + | chr1_1:7873823-7873842 | Msa0005360:CDS | 40.0% |
| TACATCATCAGAACAAGCCA+TGG | - | chr1_1:7871544-7871563 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | - | chr1_1:7871624-7871643 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | - | chr1_1:7871633-7871652 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | - | chr1_1:7871634-7871653 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | + | chr1_1:7871664-7871683 | Msa0005360:CDS | 40.0% | |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | + | chr1_1:7871698-7871717 | Msa0005360:intron | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | + | chr1_1:7871773-7871792 | Msa0005360:intron | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | + | chr1_1:7871829-7871848 | Msa0005360:intron | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | + | chr1_1:7871834-7871853 | Msa0005360:intron | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | + | chr1_1:7872005-7872024 | Msa0005360:intron | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | + | chr1_1:7872050-7872069 | Msa0005360:intron | 40.0% | |
| !! | AGTGGTGGTGTTGATAACAT+TGG | + | chr1_1:7872068-7872087 | Msa0005360:intron | 40.0% |
| GCATTTCAAATGGATGCTGA+AGG | + | chr1_1:7872218-7872237 | Msa0005360:intron | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | + | chr1_1:7872455-7872474 | Msa0005360:intron | 40.0% | |
| ! | AGATGGTTCTATCACGTATG+CGG | + | chr1_1:7872508-7872527 | Msa0005360:intron | 40.0% |
| ATTCTTCTACGGTCGTACAT+AGG | - | chr1_1:7872664-7872683 | None:intergenic | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | - | chr1_1:7872759-7872778 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | + | chr1_1:7872785-7872804 | Msa0005360:intron | 40.0% |
| CATACTTTCACTTCTTTGGG+TGG | - | chr1_1:7872819-7872838 | None:intergenic | 40.0% | |
| ! | TGTGTCACAAACTTGCTCAA+TGG | - | chr1_1:7872878-7872897 | None:intergenic | 40.0% |
| ! | CTCTCTTTCCTTGTTGTAAC+GGG | - | chr1_1:7872921-7872940 | None:intergenic | 40.0% |
| GGAAATATTTGTCCCACAAG+AGG | + | chr1_1:7873083-7873102 | Msa0005360:intron | 40.0% | |
| ! | TTGTCCCACAAGAGGTTTTA+CGG | + | chr1_1:7873091-7873110 | Msa0005360:intron | 40.0% |
| TACTCCGTAAAACCTCTTGT+GGG | - | chr1_1:7873098-7873117 | None:intergenic | 40.0% | |
| TTACTCCGTAAAACCTCTTG+TGG | - | chr1_1:7873099-7873118 | None:intergenic | 40.0% | |
| AAATTTACGAAATGCCCTGC+TGG | - | chr1_1:7873276-7873295 | None:intergenic | 40.0% | |
| !! | TTTTTCGGAGTTACGACGTT+AGG | - | chr1_1:7873323-7873342 | None:intergenic | 40.0% |
| ! | TGTGTTTCTGCAAGGTGTTT+AGG | - | chr1_1:7873387-7873406 | None:intergenic | 40.0% |
| CTATGTCGGAAAAACGAACA+AGG | - | chr1_1:7873445-7873464 | None:intergenic | 40.0% | |
| ! | GTTGAAGTTTTTCTCTGGTG+AGG | + | chr1_1:7873648-7873667 | Msa0005360:CDS | 40.0% |
| ! | TGAAGTTTTTCTCTGGTGAG+GGG | + | chr1_1:7873650-7873669 | Msa0005360:CDS | 40.0% |
| !! | TCCTCTTCTTGGGTTGAATA+AGG | + | chr1_1:7873705-7873724 | Msa0005360:CDS | 40.0% |
| ACCTTATTCAACCCAAGAAG+AGG | - | chr1_1:7873709-7873728 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAATAAGGTTTCG+AGG | + | chr1_1:7873713-7873732 | Msa0005360:CDS | 40.0% |
| GAATAAGGTTTCGAGGAACA+AGG | + | chr1_1:7873720-7873739 | Msa0005360:CDS | 40.0% | |
| GAGGAACAAGGTTGTTGAAT+CGG | + | chr1_1:7873732-7873751 | Msa0005360:CDS | 40.0% | |
| !! | TGGTGTTTTTGTGGCTATTG+TGG | + | chr1_1:7873819-7873838 | Msa0005360:CDS | 40.0% |
| ! | GTTTTTGTGGCTATTGTGGT+TGG | + | chr1_1:7873823-7873842 | Msa0005360:CDS | 40.0% |
| TGTGGATGAAGATTCCACCA+TGG | + | chr1_1:7871524-7871543 | Msa0005360:CDS | 45.0% | |
| ATCATCAGAACAAGCCATGG+TGG | - | chr1_1:7871541-7871560 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | - | chr1_1:7871567-7871586 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | + | chr1_1:7871566-7871585 | Msa0005360:CDS | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | - | chr1_1:7871623-7871642 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | - | chr1_1:7871625-7871644 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | + | chr1_1:7871623-7871642 | Msa0005360:CDS | 45.0% |
| TGAAACTAGGGTAGGATGCA+AGG | + | chr1_1:7871842-7871861 | Msa0005360:intron | 45.0% | |
| !! | GTGCTGCATGATTCTGGTTT+AGG | + | chr1_1:7872011-7872030 | Msa0005360:intron | 45.0% |
| GTCTTATGTACGGAAAGTGG+TGG | + | chr1_1:7872053-7872072 | Msa0005360:intron | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | - | chr1_1:7872353-7872372 | None:intergenic | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | + | chr1_1:7872438-7872457 | Msa0005360:intron | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | + | chr1_1:7872451-7872470 | Msa0005360:intron | 45.0% | |
| !! | CTTGTTGTAACGGGCATCAA+GGG | - | chr1_1:7872912-7872931 | None:intergenic | 45.0% |
| ! | CTGCAAGGTGTTTAGGATGA+AGG | - | chr1_1:7873380-7873399 | None:intergenic | 45.0% |
| AGATTCGGACTCCTCTTCTT+GGG | + | chr1_1:7873695-7873714 | Msa0005360:CDS | 45.0% | |
| TAGGAGTCAGAGTGAAGAAG+AGG | + | chr1_1:7873870-7873889 | Msa0005360:CDS | 45.0% | |
| TGTGGATGAAGATTCCACCA+TGG | + | chr1_1:7871524-7871543 | Msa0005360:CDS | 45.0% | |
| ATCATCAGAACAAGCCATGG+TGG | - | chr1_1:7871541-7871560 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | - | chr1_1:7871567-7871586 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | + | chr1_1:7871566-7871585 | Msa0005360:CDS | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | - | chr1_1:7871623-7871642 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | - | chr1_1:7871625-7871644 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | + | chr1_1:7871623-7871642 | Msa0005360:CDS | 45.0% |
| TGAAACTAGGGTAGGATGCA+AGG | + | chr1_1:7871842-7871861 | Msa0005360:intron | 45.0% | |
| !! | GTGCTGCATGATTCTGGTTT+AGG | + | chr1_1:7872011-7872030 | Msa0005360:intron | 45.0% |
| GTCTTATGTACGGAAAGTGG+TGG | + | chr1_1:7872053-7872072 | Msa0005360:intron | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | - | chr1_1:7872353-7872372 | None:intergenic | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | + | chr1_1:7872438-7872457 | Msa0005360:intron | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | + | chr1_1:7872451-7872470 | Msa0005360:intron | 45.0% | |
| !! | CTTGTTGTAACGGGCATCAA+GGG | - | chr1_1:7872912-7872931 | None:intergenic | 45.0% |
| ! | CTGCAAGGTGTTTAGGATGA+AGG | - | chr1_1:7873380-7873399 | None:intergenic | 45.0% |
| AGATTCGGACTCCTCTTCTT+GGG | + | chr1_1:7873695-7873714 | Msa0005360:CDS | 45.0% | |
| TAGGAGTCAGAGTGAAGAAG+AGG | + | chr1_1:7873870-7873889 | Msa0005360:CDS | 45.0% | |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | - | chr1_1:7871622-7871641 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | + | chr1_1:7871644-7871663 | Msa0005360:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | + | chr1_1:7871649-7871668 | Msa0005360:CDS | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | - | chr1_1:7871658-7871677 | None:intergenic | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | + | chr1_1:7872347-7872366 | Msa0005360:intron | 50.0% |
| !! | CCTTGTTGTAACGGGCATCA+AGG | - | chr1_1:7872913-7872932 | None:intergenic | 50.0% |
| CCTTGATGCCCGTTACAACA+AGG | + | chr1_1:7872910-7872929 | Msa0005360:intron | 50.0% | |
| GAAATGCCCTGCTGGATCTA+TGG | - | chr1_1:7873268-7873287 | None:intergenic | 50.0% | |
| ! | AGTTTTTCTCTGGTGAGGGG+AGG | + | chr1_1:7873653-7873672 | Msa0005360:CDS | 50.0% |
| AGAAGAGGAGTCCGAATCTC+CGG | - | chr1_1:7873694-7873713 | None:intergenic | 50.0% | |
| GAGATTCGGACTCCTCTTCT+TGG | + | chr1_1:7873694-7873713 | Msa0005360:CDS | 50.0% | |
| TCAGAGTGAAGAAGAGGCTG+CGG | + | chr1_1:7873876-7873895 | Msa0005360:CDS | 50.0% | |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | - | chr1_1:7871622-7871641 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | + | chr1_1:7871644-7871663 | Msa0005360:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | + | chr1_1:7871649-7871668 | Msa0005360:CDS | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | - | chr1_1:7871658-7871677 | None:intergenic | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | + | chr1_1:7872347-7872366 | Msa0005360:intron | 50.0% |
| !! | CCTTGTTGTAACGGGCATCA+AGG | - | chr1_1:7872913-7872932 | None:intergenic | 50.0% |
| CCTTGATGCCCGTTACAACA+AGG | + | chr1_1:7872910-7872929 | Msa0005360:intron | 50.0% | |
| GAAATGCCCTGCTGGATCTA+TGG | - | chr1_1:7873268-7873287 | None:intergenic | 50.0% | |
| ! | AGTTTTTCTCTGGTGAGGGG+AGG | + | chr1_1:7873653-7873672 | Msa0005360:CDS | 50.0% |
| AGAAGAGGAGTCCGAATCTC+CGG | - | chr1_1:7873694-7873713 | None:intergenic | 50.0% | |
| GAGATTCGGACTCCTCTTCT+TGG | + | chr1_1:7873694-7873713 | Msa0005360:CDS | 50.0% | |
| TCAGAGTGAAGAAGAGGCTG+CGG | + | chr1_1:7873876-7873895 | Msa0005360:CDS | 50.0% | |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | - | chr1_1:7871612-7871631 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | + | chr1_1:7871618-7871637 | Msa0005360:CDS | 55.0% | |
| AGTAACACGGCCCATGCGAA+AGG | - | chr1_1:7871712-7871731 | None:intergenic | 55.0% | |
| TATCACGTATGCGGTCGCGA+AGG | + | chr1_1:7872517-7872536 | Msa0005360:intron | 55.0% | |
| !! | GGTCGCGAAGGTGTTTCCAA+AGG | + | chr1_1:7872529-7872548 | Msa0005360:intron | 55.0% |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | - | chr1_1:7871612-7871631 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | + | chr1_1:7871618-7871637 | Msa0005360:CDS | 55.0% | |
| AGTAACACGGCCCATGCGAA+AGG | - | chr1_1:7871712-7871731 | None:intergenic | 55.0% | |
| TATCACGTATGCGGTCGCGA+AGG | + | chr1_1:7872517-7872536 | Msa0005360:intron | 55.0% | |
| !! | GGTCGCGAAGGTGTTTCCAA+AGG | + | chr1_1:7872529-7872548 | Msa0005360:intron | 55.0% |
| ! | AGTCGCCGGTGCCGGAGATT+CGG | + | chr1_1:7873680-7873699 | Msa0005360:CDS | 65.0% |
| GGAGTCCGAATCTCCGGCAC+CGG | - | chr1_1:7873688-7873707 | None:intergenic | 65.0% | |
| ! | AGTCGCCGGTGCCGGAGATT+CGG | + | chr1_1:7873680-7873699 | Msa0005360:CDS | 65.0% |
| GGAGTCCGAATCTCCGGCAC+CGG | - | chr1_1:7873688-7873707 | None:intergenic | 65.0% | |
| TGAGGGGAGGACGCAGTCGC+CGG | + | chr1_1:7873666-7873685 | Msa0005360:CDS | 70.0% | |
| TGAGGGGAGGACGCAGTCGC+CGG | + | chr1_1:7873666-7873685 | Msa0005360:CDS | 70.0% | |
| GAGGACGCAGTCGCCGGTGC+CGG | + | chr1_1:7873672-7873691 | Msa0005360:CDS | 75.0% | |
| GAGGACGCAGTCGCCGGTGC+CGG | + | chr1_1:7873672-7873691 | Msa0005360:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7871510 | 7873930 | 7871510 | ID=Msa0005360;Name=Msa0005360 |
| chr1_1 | mRNA | 7871510 | 7873930 | 7871510 | ID=Msa0005360-mRNA-1;Parent=Msa0005360;Name=Msa0005360-mRNA-1;_AED=0.23;_eAED=0.26;_QI=0|0|0|1|0|0|2|0|213 |
| chr1_1 | exon | 7871510 | 7871685 | 7871510 | ID=Msa0005360-mRNA-1:exon:2802;Parent=Msa0005360-mRNA-1 |
| chr1_1 | exon | 7873465 | 7873930 | 7873465 | ID=Msa0005360-mRNA-1:exon:2803;Parent=Msa0005360-mRNA-1 |
| chr1_1 | CDS | 7871510 | 7871685 | 7871510 | ID=Msa0005360-mRNA-1:cds;Parent=Msa0005360-mRNA-1 |
| chr1_1 | CDS | 7873465 | 7873930 | 7873465 | ID=Msa0005360-mRNA-1:cds;Parent=Msa0005360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
