AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0992570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992570 MtrunA17_Chr6g0475281 93.220 118 7 1 1 118 57 173 6.69e-76 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992570 AT5G51720.1 75.610 82 18 1 37 118 28 107 5.61e-42 134

Find 35 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATGAATTATTGAATTA+AGG 0.211362 6_4:-61669750 Msa0992570:three_prime_UTR
TCTTCACTCTTCCTTATATC+TGG 0.212325 6_4:+61671350 None:intergenic
GAACTTTGCAATAAGGTAGA+TGG 0.326744 6_4:+61671595 None:intergenic
AAAGGAACTAGTGTTGAAAT+TGG 0.341338 6_4:+61671442 None:intergenic
AAGAGACAAATGATTTCCTT+TGG 0.346290 6_4:-61669682 Msa0992570:three_prime_UTR
AATTTCAACACTAGTTCCTT+TGG 0.378332 6_4:-61671440 Msa0992570:CDS
ACTGAACCATACCTGCAATA+AGG 0.381259 6_4:+61671278 None:intergenic
AGTGTGCTATCCACAAGTTC+AGG 0.386917 6_4:-61671648 None:intergenic
TGGCTTTGTTGTGCTTTACA+TGG 0.398604 6_4:+61669942 None:intergenic
TCTCACTTAAACATGGCTTT+TGG 0.402198 6_4:+61671486 None:intergenic
TATAAGGAAGAGTGAAGAAA+AGG 0.402584 6_4:-61671345 Msa0992570:CDS
AACACTAGTTCCTTTGGTAT+TGG 0.404546 6_4:-61671434 Msa0992570:CDS
AGGCTGTTACACCTTATTGC+AGG 0.425079 6_4:-61671289 Msa0992570:intron
GTAGCATAAATCCAGATATA+AGG 0.427754 6_4:-61671361 Msa0992570:CDS
TGATACAGATGTTGGAGATC+AGG 0.432376 6_4:-61669989 Msa0992570:intron
GGCACAAAACTACACCAACT+TGG 0.466620 6_4:+61671507 None:intergenic
GTGGTGGTGAAAGCAGAGAC+AGG 0.472527 6_4:-61671392 Msa0992570:CDS
AAGCCACTGGAGATAATGTT+GGG 0.514803 6_4:-61669925 Msa0992570:CDS
GCAATAAGGTGTAACAGCCT+TGG 0.525200 6_4:+61671292 None:intergenic
AAAGCCACTGGAGATAATGT+TGG 0.533290 6_4:-61669926 Msa0992570:CDS
GTGTGCTATCCACAAGTTCA+GGG 0.549346 6_4:-61671647 None:intergenic
CTAGTTCCTTTGGTATTGGT+AGG 0.550489 6_4:-61671430 Msa0992570:CDS
GAAAGCAAGAAGTGTGGTGG+TGG 0.552869 6_4:-61671408 Msa0992570:CDS
ACATGGCTTCCATCACATAG+AGG 0.557693 6_4:+61669959 None:intergenic
TACATGTGTCCCTGAACTTG+TGG 0.559183 6_4:+61671638 None:intergenic
GTAAAGCACAACAAAGCCAC+TGG 0.579483 6_4:-61669938 Msa0992570:CDS
TGCTTTCCTACCAATACCAA+AGG 0.582424 6_4:+61671424 None:intergenic
TGTGCTCAGTGAAGTCTCCA+AGG 0.596449 6_4:-61671309 Msa0992570:CDS
TGGTGGTGAAAGCAGAGACA+GGG 0.597940 6_4:-61671391 Msa0992570:CDS
GTATGAAATTAAAGATCCAA+AGG 0.612869 6_4:+61669666 None:intergenic
AGGCCCAACATTATCTCCAG+TGG 0.629442 6_4:+61669922 None:intergenic
TGGTAGGAAAGCAAGAAGTG+TGG 0.633825 6_4:-61671414 Msa0992570:CDS
GGTGGTGAAAGCAGAGACAG+GGG 0.666105 6_4:-61671390 Msa0992570:CDS
TAGGAAAGCAAGAAGTGTGG+TGG 0.698142 6_4:-61671411 Msa0992570:CDS
GTGGTGAAAGCAGAGACAGG+GGG 0.706898 6_4:-61671389 Msa0992570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTTCATTTATTTA+TGG - chr6_4:61670067-61670086 Msa0992570:intron 10.0%
!! TATTATTGAAATTTGATTAT+TGG - chr6_4:61670156-61670175 Msa0992570:intron 10.0%
!!! TTGGAATTTTATTTTTATTA+GGG - chr6_4:61670956-61670975 Msa0992570:intron 10.0%
!! TTGAGTAATTATAATAAAAA+GGG + chr6_4:61671153-61671172 None:intergenic 10.0%
!! ATTTATGAATTATTGAATTA+AGG - chr6_4:61671569-61671588 Msa0992570:five_prime_UTR 10.0%
!!! TTATGTTTTTCATTTATTTA+TGG - chr6_4:61670067-61670086 Msa0992570:intron 10.0%
!! TATTATTGAAATTTGATTAT+TGG - chr6_4:61670156-61670175 Msa0992570:intron 10.0%
!!! TTGGAATTTTATTTTTATTA+GGG - chr6_4:61670956-61670975 Msa0992570:intron 10.0%
!! TTGAGTAATTATAATAAAAA+GGG + chr6_4:61671153-61671172 None:intergenic 10.0%
!! ATTTATGAATTATTGAATTA+AGG - chr6_4:61671569-61671588 Msa0992570:five_prime_UTR 10.0%
!!! GTTGGAATTTTATTTTTATT+AGG - chr6_4:61670955-61670974 Msa0992570:intron 15.0%
!! CTTGAGTAATTATAATAAAA+AGG + chr6_4:61671154-61671173 None:intergenic 15.0%
!!! GTTGGAATTTTATTTTTATT+AGG - chr6_4:61670955-61670974 Msa0992570:intron 15.0%
!! CTTGAGTAATTATAATAAAA+AGG + chr6_4:61671154-61671173 None:intergenic 15.0%
!!! TGATTATTGGTTAATTTATG+TGG - chr6_4:61670169-61670188 Msa0992570:intron 20.0%
!! ATTTAGTTGAAAACAACTTA+TGG - chr6_4:61670235-61670254 Msa0992570:intron 20.0%
!! TATCACAAATTAACAATGTT+TGG - chr6_4:61670564-61670583 Msa0992570:intron 20.0%
!! TATGCTTCTATAATATATGT+TGG - chr6_4:61670937-61670956 Msa0992570:intron 20.0%
!! AAGGAAATTCTTACTATAAA+AGG + chr6_4:61671085-61671104 None:intergenic 20.0%
!!! AGAATGATTAAGATTTGTTT+TGG + chr6_4:61671296-61671315 None:intergenic 20.0%
!! AAAACAAATCTTAATCATTC+TGG - chr6_4:61671295-61671314 Msa0992570:CDS 20.0%
!!! TTTTTCAATTCATCTTAAGT+TGG - chr6_4:61671538-61671557 Msa0992570:exon 20.0%
!!! TGATTATTGGTTAATTTATG+TGG - chr6_4:61670169-61670188 Msa0992570:intron 20.0%
!! ATTTAGTTGAAAACAACTTA+TGG - chr6_4:61670235-61670254 Msa0992570:intron 20.0%
!! TATCACAAATTAACAATGTT+TGG - chr6_4:61670564-61670583 Msa0992570:intron 20.0%
!! TATGCTTCTATAATATATGT+TGG - chr6_4:61670937-61670956 Msa0992570:intron 20.0%
!! AAGGAAATTCTTACTATAAA+AGG + chr6_4:61671085-61671104 None:intergenic 20.0%
!!! AGAATGATTAAGATTTGTTT+TGG + chr6_4:61671296-61671315 None:intergenic 20.0%
!! AAAACAAATCTTAATCATTC+TGG - chr6_4:61671295-61671314 Msa0992570:CDS 20.0%
!!! TTTTTCAATTCATCTTAAGT+TGG - chr6_4:61671538-61671557 Msa0992570:exon 20.0%
!!! AAGTTTTGAACTTTGCAATA+AGG + chr6_4:61669734-61669753 None:intergenic 25.0%
!! TTTTGTGTTTATCTTCTCTT+TGG + chr6_4:61669763-61669782 None:intergenic 25.0%
! CACAAAAAATTCATACTCAA+TGG - chr6_4:61669776-61669795 Msa0992570:three_prime_UTR 25.0%
!!! TTTTTTCTCTCACTTAAACA+TGG + chr6_4:61669843-61669862 None:intergenic 25.0%
! ATGTTTAAGTGAGAGAAAAA+AGG - chr6_4:61669842-61669861 Msa0992570:three_prime_UTR 25.0%
! TGTTTAAGTGAGAGAAAAAA+GGG - chr6_4:61669843-61669862 Msa0992570:three_prime_UTR 25.0%
! CTAAATTCCATAAACTATCT+AGG + chr6_4:61670221-61670240 None:intergenic 25.0%
! TGATATTAGATGAATGATTC+TGG - chr6_4:61670411-61670430 Msa0992570:intron 25.0%
!! GCATTTTGTATATGATAATC+TGG - chr6_4:61670607-61670626 Msa0992570:intron 25.0%
!! ATGATAATCTGGAATAATGT+TGG - chr6_4:61670618-61670637 Msa0992570:intron 25.0%
!! TGATAATCTGGAATAATGTT+GGG - chr6_4:61670619-61670638 Msa0992570:intron 25.0%
! ACATAGACATGATTTATTTG+TGG + chr6_4:61670700-61670719 None:intergenic 25.0%
! TAGATTCCACATAAAGAATT+TGG - chr6_4:61670886-61670905 Msa0992570:intron 25.0%
! TAAGTACCAAATTCTTTATG+TGG + chr6_4:61670895-61670914 None:intergenic 25.0%
! AAGAATTTGGTACTTATTAG+TGG - chr6_4:61670899-61670918 Msa0992570:intron 25.0%
!!! AATCTTAATCATTCTGGTTT+TGG - chr6_4:61671301-61671320 Msa0992570:CDS 25.0%
!!! ATCTTAATCATTCTGGTTTT+GGG - chr6_4:61671302-61671321 Msa0992570:CDS 25.0%
!!! CTCTATTTTTTCAAAAGAAG+AGG + chr6_4:61671420-61671439 None:intergenic 25.0%
!! GAGAGAAATTAAATTTTCAG+AGG - chr6_4:61671463-61671482 Msa0992570:CDS 25.0%
!!! AAGTTTTGAACTTTGCAATA+AGG + chr6_4:61669734-61669753 None:intergenic 25.0%
!! TTTTGTGTTTATCTTCTCTT+TGG + chr6_4:61669763-61669782 None:intergenic 25.0%
! CACAAAAAATTCATACTCAA+TGG - chr6_4:61669776-61669795 Msa0992570:three_prime_UTR 25.0%
!!! TTTTTTCTCTCACTTAAACA+TGG + chr6_4:61669843-61669862 None:intergenic 25.0%
! ATGTTTAAGTGAGAGAAAAA+AGG - chr6_4:61669842-61669861 Msa0992570:three_prime_UTR 25.0%
! TGTTTAAGTGAGAGAAAAAA+GGG - chr6_4:61669843-61669862 Msa0992570:three_prime_UTR 25.0%
! CTAAATTCCATAAACTATCT+AGG + chr6_4:61670221-61670240 None:intergenic 25.0%
! TGATATTAGATGAATGATTC+TGG - chr6_4:61670411-61670430 Msa0992570:intron 25.0%
!! GCATTTTGTATATGATAATC+TGG - chr6_4:61670607-61670626 Msa0992570:intron 25.0%
!! ATGATAATCTGGAATAATGT+TGG - chr6_4:61670618-61670637 Msa0992570:intron 25.0%
!! TGATAATCTGGAATAATGTT+GGG - chr6_4:61670619-61670638 Msa0992570:intron 25.0%
! ACATAGACATGATTTATTTG+TGG + chr6_4:61670700-61670719 None:intergenic 25.0%
! TAGATTCCACATAAAGAATT+TGG - chr6_4:61670886-61670905 Msa0992570:intron 25.0%
! TAAGTACCAAATTCTTTATG+TGG + chr6_4:61670895-61670914 None:intergenic 25.0%
! AAGAATTTGGTACTTATTAG+TGG - chr6_4:61670899-61670918 Msa0992570:intron 25.0%
!!! AATCTTAATCATTCTGGTTT+TGG - chr6_4:61671301-61671320 Msa0992570:CDS 25.0%
!!! ATCTTAATCATTCTGGTTTT+GGG - chr6_4:61671302-61671321 Msa0992570:CDS 25.0%
!!! CTCTATTTTTTCAAAAGAAG+AGG + chr6_4:61671420-61671439 None:intergenic 25.0%
!! GAGAGAAATTAAATTTTCAG+AGG - chr6_4:61671463-61671482 Msa0992570:CDS 25.0%
GAGAGAAAAAAGGGAATTAT+AGG - chr6_4:61669852-61669871 Msa0992570:three_prime_UTR 30.0%
! AAAGGAACTAGTGTTGAAAT+TGG + chr6_4:61669880-61669899 None:intergenic 30.0%
AATTTCAACACTAGTTCCTT+TGG - chr6_4:61669879-61669898 Msa0992570:three_prime_UTR 30.0%
GTAGCATAAATCCAGATATA+AGG - chr6_4:61669958-61669977 Msa0992570:CDS 30.0%
TATAAGGAAGAGTGAAGAAA+AGG - chr6_4:61669974-61669993 Msa0992570:CDS 30.0%
TATGGTTAAGTGTATCATTG+TGG - chr6_4:61670085-61670104 Msa0992570:intron 30.0%
AAGCTATCCTAGATAGTTTA+TGG - chr6_4:61670211-61670230 Msa0992570:intron 30.0%
TGATTGATTACATCTGTTTC+TGG - chr6_4:61670490-61670509 Msa0992570:intron 30.0%
! GATAATCTGGAATAATGTTG+GGG - chr6_4:61670620-61670639 Msa0992570:intron 30.0%
TGAGAAATTACGATGTTGAT+AGG - chr6_4:61670672-61670691 Msa0992570:intron 30.0%
!! AATTCGGCAAAGTTTTATGT+TGG + chr6_4:61670798-61670817 None:intergenic 30.0%
TTTATTAGGGAAATGCTAAC+CGG - chr6_4:61670969-61670988 Msa0992570:intron 30.0%
ACTGGTTAAGGATACTAAAA+AGG - chr6_4:61671004-61671023 Msa0992570:intron 30.0%
CTGGTTAAGGATACTAAAAA+GGG - chr6_4:61671005-61671024 Msa0992570:intron 30.0%
!!! CCTTTTTTTGTATGCTTAAC+CGG - chr6_4:61671101-61671120 Msa0992570:intron 30.0%
ACTTCAAAACATGAAGAACA+AGG + chr6_4:61671180-61671199 None:intergenic 30.0%
!! CAGACACAACATTTTAATGT+TGG - chr6_4:61671498-61671517 Msa0992570:CDS 30.0%
AAGAGACAAATGATTTCCTT+TGG - chr6_4:61671637-61671656 Msa0992570:five_prime_UTR 30.0%
GAGAGAAAAAAGGGAATTAT+AGG - chr6_4:61669852-61669871 Msa0992570:three_prime_UTR 30.0%
! AAAGGAACTAGTGTTGAAAT+TGG + chr6_4:61669880-61669899 None:intergenic 30.0%
AATTTCAACACTAGTTCCTT+TGG - chr6_4:61669879-61669898 Msa0992570:three_prime_UTR 30.0%
GTAGCATAAATCCAGATATA+AGG - chr6_4:61669958-61669977 Msa0992570:CDS 30.0%
TATAAGGAAGAGTGAAGAAA+AGG - chr6_4:61669974-61669993 Msa0992570:CDS 30.0%
TATGGTTAAGTGTATCATTG+TGG - chr6_4:61670085-61670104 Msa0992570:intron 30.0%
AAGCTATCCTAGATAGTTTA+TGG - chr6_4:61670211-61670230 Msa0992570:intron 30.0%
TGATTGATTACATCTGTTTC+TGG - chr6_4:61670490-61670509 Msa0992570:intron 30.0%
! GATAATCTGGAATAATGTTG+GGG - chr6_4:61670620-61670639 Msa0992570:intron 30.0%
TGAGAAATTACGATGTTGAT+AGG - chr6_4:61670672-61670691 Msa0992570:intron 30.0%
!! AATTCGGCAAAGTTTTATGT+TGG + chr6_4:61670798-61670817 None:intergenic 30.0%
TTTATTAGGGAAATGCTAAC+CGG - chr6_4:61670969-61670988 Msa0992570:intron 30.0%
ACTGGTTAAGGATACTAAAA+AGG - chr6_4:61671004-61671023 Msa0992570:intron 30.0%
CTGGTTAAGGATACTAAAAA+GGG - chr6_4:61671005-61671024 Msa0992570:intron 30.0%
!!! CCTTTTTTTGTATGCTTAAC+CGG - chr6_4:61671101-61671120 Msa0992570:intron 30.0%
ACTTCAAAACATGAAGAACA+AGG + chr6_4:61671180-61671199 None:intergenic 30.0%
!! CAGACACAACATTTTAATGT+TGG - chr6_4:61671498-61671517 Msa0992570:CDS 30.0%
AAGAGACAAATGATTTCCTT+TGG - chr6_4:61671637-61671656 Msa0992570:five_prime_UTR 30.0%
GAACTTTGCAATAAGGTAGA+TGG + chr6_4:61669727-61669746 None:intergenic 35.0%
! TCTCACTTAAACATGGCTTT+TGG + chr6_4:61669836-61669855 None:intergenic 35.0%
AACACTAGTTCCTTTGGTAT+TGG - chr6_4:61669885-61669904 Msa0992570:exon 35.0%
TCTTCACTCTTCCTTATATC+TGG + chr6_4:61669972-61669991 None:intergenic 35.0%
CTCTCAAATAGTTTCACAAG+TGG - chr6_4:61670284-61670303 Msa0992570:intron 35.0%
!! GAATGATTCTGGTTTCTTTC+AGG - chr6_4:61670422-61670441 Msa0992570:intron 35.0%
!! TTAGCCTTGTTATACATTGC+CGG - chr6_4:61670719-61670738 Msa0992570:intron 35.0%
TTTGCCGAATTTCTATGACA+TGG - chr6_4:61670807-61670826 Msa0992570:intron 35.0%
TGGTCCATGTCATAGAAATT+CGG + chr6_4:61670814-61670833 None:intergenic 35.0%
! AGAGGCTTGATTGTTATTGT+TGG - chr6_4:61670863-61670882 Msa0992570:intron 35.0%
CCGGTTAAGCATACAAAAAA+AGG + chr6_4:61671104-61671123 None:intergenic 35.0%
ATAAAAAGGGTCATGCTAAC+CGG + chr6_4:61671140-61671159 None:intergenic 35.0%
GAACTTTGCAATAAGGTAGA+TGG + chr6_4:61669727-61669746 None:intergenic 35.0%
! TCTCACTTAAACATGGCTTT+TGG + chr6_4:61669836-61669855 None:intergenic 35.0%
AACACTAGTTCCTTTGGTAT+TGG - chr6_4:61669885-61669904 Msa0992570:exon 35.0%
TCTTCACTCTTCCTTATATC+TGG + chr6_4:61669972-61669991 None:intergenic 35.0%
CTCTCAAATAGTTTCACAAG+TGG - chr6_4:61670284-61670303 Msa0992570:intron 35.0%
!! GAATGATTCTGGTTTCTTTC+AGG - chr6_4:61670422-61670441 Msa0992570:intron 35.0%
!! TTAGCCTTGTTATACATTGC+CGG - chr6_4:61670719-61670738 Msa0992570:intron 35.0%
TTTGCCGAATTTCTATGACA+TGG - chr6_4:61670807-61670826 Msa0992570:intron 35.0%
TGGTCCATGTCATAGAAATT+CGG + chr6_4:61670814-61670833 None:intergenic 35.0%
! AGAGGCTTGATTGTTATTGT+TGG - chr6_4:61670863-61670882 Msa0992570:intron 35.0%
CCGGTTAAGCATACAAAAAA+AGG + chr6_4:61671104-61671123 None:intergenic 35.0%
ATAAAAAGGGTCATGCTAAC+CGG + chr6_4:61671140-61671159 None:intergenic 35.0%
!! GCATCTGTTTTAAGCCAAGT+TGG - chr6_4:61669798-61669817 Msa0992570:three_prime_UTR 40.0%
!! CTAGTTCCTTTGGTATTGGT+AGG - chr6_4:61669889-61669908 Msa0992570:exon 40.0%
TGCTTTCCTACCAATACCAA+AGG + chr6_4:61669898-61669917 None:intergenic 40.0%
GTTACACCTTATTGCAGGTA+TGG - chr6_4:61670035-61670054 Msa0992570:intron 40.0%
ACTGAACCATACCTGCAATA+AGG + chr6_4:61670044-61670063 None:intergenic 40.0%
!! GCTAGCGTTGATGTCATTTA+TGG - chr6_4:61670341-61670360 Msa0992570:intron 40.0%
!! CTTTTACTTGGGTTTGAGAC+CGG + chr6_4:61670741-61670760 None:intergenic 40.0%
TCAAACCCAAGTAAAAGGAG+AGG - chr6_4:61670744-61670763 Msa0992570:intron 40.0%
CAAACCCAAGTAAAAGGAGA+GGG - chr6_4:61670745-61670764 Msa0992570:intron 40.0%
! ACAACCCTCTCCTTTTACTT+GGG + chr6_4:61670752-61670771 None:intergenic 40.0%
TGATACAGATGTTGGAGATC+AGG - chr6_4:61671330-61671349 Msa0992570:CDS 40.0%
! GGAACTTTTCCTCTATGTGA+TGG - chr6_4:61671351-61671370 Msa0992570:CDS 40.0%
!! TGGCTTTGTTGTGCTTTACA+TGG + chr6_4:61671380-61671399 None:intergenic 40.0%
AAAGCCACTGGAGATAATGT+TGG - chr6_4:61671393-61671412 Msa0992570:CDS 40.0%
AAGCCACTGGAGATAATGTT+GGG - chr6_4:61671394-61671413 Msa0992570:CDS 40.0%
!! GCATCTGTTTTAAGCCAAGT+TGG - chr6_4:61669798-61669817 Msa0992570:three_prime_UTR 40.0%
!! CTAGTTCCTTTGGTATTGGT+AGG - chr6_4:61669889-61669908 Msa0992570:exon 40.0%
TGCTTTCCTACCAATACCAA+AGG + chr6_4:61669898-61669917 None:intergenic 40.0%
GTTACACCTTATTGCAGGTA+TGG - chr6_4:61670035-61670054 Msa0992570:intron 40.0%
ACTGAACCATACCTGCAATA+AGG + chr6_4:61670044-61670063 None:intergenic 40.0%
!! GCTAGCGTTGATGTCATTTA+TGG - chr6_4:61670341-61670360 Msa0992570:intron 40.0%
!! CTTTTACTTGGGTTTGAGAC+CGG + chr6_4:61670741-61670760 None:intergenic 40.0%
TCAAACCCAAGTAAAAGGAG+AGG - chr6_4:61670744-61670763 Msa0992570:intron 40.0%
CAAACCCAAGTAAAAGGAGA+GGG - chr6_4:61670745-61670764 Msa0992570:intron 40.0%
! ACAACCCTCTCCTTTTACTT+GGG + chr6_4:61670752-61670771 None:intergenic 40.0%
TGATACAGATGTTGGAGATC+AGG - chr6_4:61671330-61671349 Msa0992570:CDS 40.0%
! GGAACTTTTCCTCTATGTGA+TGG - chr6_4:61671351-61671370 Msa0992570:CDS 40.0%
!! TGGCTTTGTTGTGCTTTACA+TGG + chr6_4:61671380-61671399 None:intergenic 40.0%
AAAGCCACTGGAGATAATGT+TGG - chr6_4:61671393-61671412 Msa0992570:CDS 40.0%
AAGCCACTGGAGATAATGTT+GGG - chr6_4:61671394-61671413 Msa0992570:CDS 40.0%
TACATGTGTCCCTGAACTTG+TGG + chr6_4:61669684-61669703 None:intergenic 45.0%
GGCACAAAACTACACCAACT+TGG + chr6_4:61669815-61669834 None:intergenic 45.0%
TGGTAGGAAAGCAAGAAGTG+TGG - chr6_4:61669905-61669924 Msa0992570:CDS 45.0%
! TAGGAAAGCAAGAAGTGTGG+TGG - chr6_4:61669908-61669927 Msa0992570:CDS 45.0%
GCAATAAGGTGTAACAGCCT+TGG + chr6_4:61670030-61670049 None:intergenic 45.0%
AGGCTGTTACACCTTATTGC+AGG - chr6_4:61670030-61670049 Msa0992570:intron 45.0%
GAGACCGGCAATGTATAACA+AGG + chr6_4:61670726-61670745 None:intergenic 45.0%
CGGTCTCAAACCCAAGTAAA+AGG - chr6_4:61670739-61670758 Msa0992570:intron 45.0%
! CACAACCCTCTCCTTTTACT+TGG + chr6_4:61670753-61670772 None:intergenic 45.0%
GTAAAAGGAGAGGGTTGTGT+TGG - chr6_4:61670754-61670773 Msa0992570:intron 45.0%
!! AGGGTTGTGTTGGTTGTGTT+AGG - chr6_4:61670764-61670783 Msa0992570:intron 45.0%
GGGTGCTTTGATACAGATGT+TGG - chr6_4:61671322-61671341 Msa0992570:CDS 45.0%
ACATGGCTTCCATCACATAG+AGG + chr6_4:61671363-61671382 None:intergenic 45.0%
GTAAAGCACAACAAAGCCAC+TGG - chr6_4:61671381-61671400 Msa0992570:CDS 45.0%
TACATGTGTCCCTGAACTTG+TGG + chr6_4:61669684-61669703 None:intergenic 45.0%
GGCACAAAACTACACCAACT+TGG + chr6_4:61669815-61669834 None:intergenic 45.0%
TGGTAGGAAAGCAAGAAGTG+TGG - chr6_4:61669905-61669924 Msa0992570:CDS 45.0%
! TAGGAAAGCAAGAAGTGTGG+TGG - chr6_4:61669908-61669927 Msa0992570:CDS 45.0%
GCAATAAGGTGTAACAGCCT+TGG + chr6_4:61670030-61670049 None:intergenic 45.0%
AGGCTGTTACACCTTATTGC+AGG - chr6_4:61670030-61670049 Msa0992570:intron 45.0%
GAGACCGGCAATGTATAACA+AGG + chr6_4:61670726-61670745 None:intergenic 45.0%
CGGTCTCAAACCCAAGTAAA+AGG - chr6_4:61670739-61670758 Msa0992570:intron 45.0%
! CACAACCCTCTCCTTTTACT+TGG + chr6_4:61670753-61670772 None:intergenic 45.0%
GTAAAAGGAGAGGGTTGTGT+TGG - chr6_4:61670754-61670773 Msa0992570:intron 45.0%
!! AGGGTTGTGTTGGTTGTGTT+AGG - chr6_4:61670764-61670783 Msa0992570:intron 45.0%
GGGTGCTTTGATACAGATGT+TGG - chr6_4:61671322-61671341 Msa0992570:CDS 45.0%
ACATGGCTTCCATCACATAG+AGG + chr6_4:61671363-61671382 None:intergenic 45.0%
GTAAAGCACAACAAAGCCAC+TGG - chr6_4:61671381-61671400 Msa0992570:CDS 45.0%
! GAAAGCAAGAAGTGTGGTGG+TGG - chr6_4:61669911-61669930 Msa0992570:CDS 50.0%
! TGGTGGTGAAAGCAGAGACA+GGG - chr6_4:61669928-61669947 Msa0992570:CDS 50.0%
TGTGCTCAGTGAAGTCTCCA+AGG - chr6_4:61670010-61670029 Msa0992570:intron 50.0%
ACCCTGCTTAGTGGGATAAG+AGG - chr6_4:61670845-61670864 Msa0992570:intron 50.0%
GCCTCTTATCCCACTAAGCA+GGG + chr6_4:61670849-61670868 None:intergenic 50.0%
AGCCTCTTATCCCACTAAGC+AGG + chr6_4:61670850-61670869 None:intergenic 50.0%
TATCCTTAACCAGTGCCCCA+GGG + chr6_4:61670998-61671017 None:intergenic 50.0%
AGGCCCAACATTATCTCCAG+TGG + chr6_4:61671400-61671419 None:intergenic 50.0%
! GAAAGCAAGAAGTGTGGTGG+TGG - chr6_4:61669911-61669930 Msa0992570:CDS 50.0%
! TGGTGGTGAAAGCAGAGACA+GGG - chr6_4:61669928-61669947 Msa0992570:CDS 50.0%
TGTGCTCAGTGAAGTCTCCA+AGG - chr6_4:61670010-61670029 Msa0992570:intron 50.0%
ACCCTGCTTAGTGGGATAAG+AGG - chr6_4:61670845-61670864 Msa0992570:intron 50.0%
GCCTCTTATCCCACTAAGCA+GGG + chr6_4:61670849-61670868 None:intergenic 50.0%
AGCCTCTTATCCCACTAAGC+AGG + chr6_4:61670850-61670869 None:intergenic 50.0%
TATCCTTAACCAGTGCCCCA+GGG + chr6_4:61670998-61671017 None:intergenic 50.0%
AGGCCCAACATTATCTCCAG+TGG + chr6_4:61671400-61671419 None:intergenic 50.0%
! GTGGTGGTGAAAGCAGAGAC+AGG - chr6_4:61669927-61669946 Msa0992570:CDS 55.0%
GGTGGTGAAAGCAGAGACAG+GGG - chr6_4:61669929-61669948 Msa0992570:CDS 55.0%
GTGGTGAAAGCAGAGACAGG+GGG - chr6_4:61669930-61669949 Msa0992570:CDS 55.0%
! AAAGCAGAGACAGGGGGTGT+GGG - chr6_4:61669936-61669955 Msa0992570:CDS 55.0%
AAGCAGGGTCAGCTCGTATG+TGG + chr6_4:61670834-61670853 None:intergenic 55.0%
TACGAGCTGACCCTGCTTAG+TGG - chr6_4:61670836-61670855 Msa0992570:intron 55.0%
ACGAGCTGACCCTGCTTAGT+GGG - chr6_4:61670837-61670856 Msa0992570:intron 55.0%
AAATGCTAACCGGTGCCCCT+GGG - chr6_4:61670979-61670998 Msa0992570:intron 55.0%
ATCCTTAACCAGTGCCCCAG+GGG + chr6_4:61670997-61671016 None:intergenic 55.0%
GTATCCTTAACCAGTGCCCC+AGG + chr6_4:61670999-61671018 None:intergenic 55.0%
TGTATGCTTAACCGGTGCCC+CGG - chr6_4:61671109-61671128 Msa0992570:intron 55.0%
! GTGGTGGTGAAAGCAGAGAC+AGG - chr6_4:61669927-61669946 Msa0992570:CDS 55.0%
GGTGGTGAAAGCAGAGACAG+GGG - chr6_4:61669929-61669948 Msa0992570:CDS 55.0%
GTGGTGAAAGCAGAGACAGG+GGG - chr6_4:61669930-61669949 Msa0992570:CDS 55.0%
! AAAGCAGAGACAGGGGGTGT+GGG - chr6_4:61669936-61669955 Msa0992570:CDS 55.0%
AAGCAGGGTCAGCTCGTATG+TGG + chr6_4:61670834-61670853 None:intergenic 55.0%
TACGAGCTGACCCTGCTTAG+TGG - chr6_4:61670836-61670855 Msa0992570:intron 55.0%
ACGAGCTGACCCTGCTTAGT+GGG - chr6_4:61670837-61670856 Msa0992570:intron 55.0%
AAATGCTAACCGGTGCCCCT+GGG - chr6_4:61670979-61670998 Msa0992570:intron 55.0%
ATCCTTAACCAGTGCCCCAG+GGG + chr6_4:61670997-61671016 None:intergenic 55.0%
GTATCCTTAACCAGTGCCCC+AGG + chr6_4:61670999-61671018 None:intergenic 55.0%
TGTATGCTTAACCGGTGCCC+CGG - chr6_4:61671109-61671128 Msa0992570:intron 55.0%
GAAAGCAGAGACAGGGGGTG+TGG - chr6_4:61669935-61669954 Msa0992570:CDS 60.0%
GAAATGCTAACCGGTGCCCC+TGG - chr6_4:61670978-61670997 Msa0992570:intron 60.0%
AATGCTAACCGGTGCCCCTG+GGG - chr6_4:61670980-61670999 Msa0992570:intron 60.0%
GTATGCTTAACCGGTGCCCC+GGG - chr6_4:61671110-61671129 Msa0992570:intron 60.0%
TATGCTTAACCGGTGCCCCG+GGG - chr6_4:61671111-61671130 Msa0992570:intron 60.0%
TCATGCTAACCGGTGTCCCC+GGG + chr6_4:61671130-61671149 None:intergenic 60.0%
GTCATGCTAACCGGTGTCCC+CGG + chr6_4:61671131-61671150 None:intergenic 60.0%
GAAAGCAGAGACAGGGGGTG+TGG - chr6_4:61669935-61669954 Msa0992570:CDS 60.0%
GAAATGCTAACCGGTGCCCC+TGG - chr6_4:61670978-61670997 Msa0992570:intron 60.0%
AATGCTAACCGGTGCCCCTG+GGG - chr6_4:61670980-61670999 Msa0992570:intron 60.0%
GTATGCTTAACCGGTGCCCC+GGG - chr6_4:61671110-61671129 Msa0992570:intron 60.0%
TATGCTTAACCGGTGCCCCG+GGG - chr6_4:61671111-61671130 Msa0992570:intron 60.0%
TCATGCTAACCGGTGTCCCC+GGG + chr6_4:61671130-61671149 None:intergenic 60.0%
GTCATGCTAACCGGTGTCCC+CGG + chr6_4:61671131-61671150 None:intergenic 60.0%
!! TGCCCCTGGGGCACTGGTTA+AGG - chr6_4:61670992-61671011 Msa0992570:intron 65.0%
CATGCTAACCGGTGTCCCCG+GGG + chr6_4:61671129-61671148 None:intergenic 65.0%
!! TGCCCCTGGGGCACTGGTTA+AGG - chr6_4:61670992-61671011 Msa0992570:intron 65.0%
CATGCTAACCGGTGTCCCCG+GGG + chr6_4:61671129-61671148 None:intergenic 65.0%
! AACCAGTGCCCCAGGGGCAC+CGG + chr6_4:61670991-61671010 None:intergenic 70.0%
! AACCAGTGCCCCAGGGGCAC+CGG + chr6_4:61670991-61671010 None:intergenic 70.0%
AACCGGTGCCCCTGGGGCAC+TGG - chr6_4:61670986-61671005 Msa0992570:intron 75.0%
AACCGGTGCCCCGGGGACAC+CGG - chr6_4:61671118-61671137 Msa0992570:intron 75.0%
AACCGGTGTCCCCGGGGCAC+CGG + chr6_4:61671123-61671142 None:intergenic 75.0%
AACCGGTGCCCCTGGGGCAC+TGG - chr6_4:61670986-61671005 Msa0992570:intron 75.0%
AACCGGTGCCCCGGGGACAC+CGG - chr6_4:61671118-61671137 Msa0992570:intron 75.0%
AACCGGTGTCCCCGGGGCAC+CGG + chr6_4:61671123-61671142 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 61669676 61671665 61669676 ID=Msa0992570;Name=Msa0992570
chr6_4 mRNA 61669676 61671665 61669676 ID=Msa0992570-mRNA-1;Parent=Msa0992570;Name=Msa0992570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|1|1|1|1|2|228|118
chr6_4 exon 61669676 61670003 61669676 ID=Msa0992570-mRNA-1:exon:11893;Parent=Msa0992570-mRNA-1
chr6_4 exon 61671290 61671665 61671290 ID=Msa0992570-mRNA-1:exon:11892;Parent=Msa0992570-mRNA-1
chr6_4 five_prime_UTR 61671547 61671665 61671547 ID=Msa0992570-mRNA-1:five_prime_utr;Parent=Msa0992570-mRNA-1
chr6_4 CDS 61671290 61671546 61671290 ID=Msa0992570-mRNA-1:cds;Parent=Msa0992570-mRNA-1
chr6_4 CDS 61669904 61670003 61669904 ID=Msa0992570-mRNA-1:cds;Parent=Msa0992570-mRNA-1
chr6_4 three_prime_UTR 61669676 61669903 61669676 ID=Msa0992570-mRNA-1:three_prime_utr;Parent=Msa0992570-mRNA-1
Gene Sequence

>Msa0992570

ATGGCATCTGTTTTAAGCCAAGTTGGTGTAGTTTTGTGCCAAAAGCCATGTTTAAGTGAGAGAAAAAAGGGAATTATAGGTACCAATTTCAACACTAGTTCCTTTGGTATTGGTAGGAAAGCAAGAAGTGTGGTGGTGGTGAAAGCAGAGACAGGGGGTGTGGGTAGCATAAATCCAGATATAAGGAAGAGTGAAGAAAAGGTTGTTGATGCTGTTGTGCTCAGTGAAGTCTCCAAGGCTGTTACACCTTATTGCAGATGTTGGAGATCAGGAACTTTTCCTCTATGTGATGGAAGCCATGTAAAGCACAACAAAGCCACTGGAGATAATGTTGGGCCTCTTCTTTTGAAAAAATAG

Protein sequence

>Msa0992570

MASVLSQVGVVLCQKPCLSERKKGIIGTNFNTSSFGIGRKARSVVVVKAETGGVGSINPDIRKSEEKVVDAVVLSEVSKAVTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK*