AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547050 MtrunA17_Chr4g0028871 99.043 209 2 0 1 209 1 209 7.85e-154 424
Msa0547050 MtrunA17_Chr2g0326841 88.517 209 24 0 1 209 1 209 2.15e-138 385
Msa0547050 MtrunA17_Chr1g0181131 87.255 204 26 0 1 204 1 204 6.49e-133 372
Msa0547050 MtrunA17_Chr7g0264181 87.940 199 24 0 6 204 7 205 1.05e-130 366
Msa0547050 MtrunA17_Chr3g0142491 72.222 216 53 1 1 209 3 218 3.61e-116 330
Msa0547050 MtrunA17_Chr1g0177391 75.377 199 49 0 6 204 2 200 6.47e-113 321
Msa0547050 MtrunA17_Chr1g0151201 68.095 210 61 2 1 208 1 206 1.23e-103 298
Msa0547050 MtrunA17_Chr1g0156401 64.286 112 19 1 40 130 1 112 4.14e-43 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547050 AT2G28305.1 90.816 196 18 0 9 204 4 199 8.26e-133 372
Msa0547050 AT2G37210.1 85.644 202 29 0 7 208 8 209 9.26e-131 367
Msa0547050 AT3G53450.1 82.857 210 35 1 1 209 1 210 1.89e-128 360
Msa0547050 AT2G37210.2 76.106 226 30 1 7 208 8 233 8.58e-125 352
Msa0547050 AT2G28305.3 92.778 180 13 0 9 188 4 183 4.86e-123 346
Msa0547050 AT5G06300.1 78.894 199 42 0 6 204 2 200 1.17e-117 333
Msa0547050 AT5G03270.1 79.793 193 39 0 3 195 9 201 6.28e-113 321
Msa0547050 AT5G03270.2 79.787 188 38 0 3 190 9 196 6.99e-109 310
Msa0547050 AT2G35990.1 69.849 199 60 0 6 204 2 200 9.68e-109 311
Msa0547050 AT4G35190.1 71.782 202 57 0 6 207 2 203 1.98e-108 310
Msa0547050 AT4G35190.2 73.545 189 50 0 6 194 2 190 5.00e-103 296
Msa0547050 AT5G11950.1 67.164 201 66 0 8 208 5 205 7.62e-103 296
Msa0547050 AT5G11950.2 67.164 201 66 0 8 208 5 205 7.62e-103 296
Msa0547050 AT5G11950.3 67.164 201 66 0 8 208 5 205 7.62e-103 296
Msa0547050 AT2G28305.2 92.647 136 10 0 9 144 4 139 8.75e-90 261
Msa0547050 AT2G35990.3 70.270 148 44 0 57 204 1 148 2.67e-78 232
Msa0547050 AT2G35990.2 70.270 148 44 0 57 204 1 148 2.67e-78 232
Msa0547050 AT5G11950.4 67.105 152 50 0 57 208 1 152 1.62e-74 222
Msa0547050 AT5G26140.2 55.102 147 44 1 84 208 6 152 3.08e-48 155
Msa0547050 AT5G26140.1 54.135 133 39 1 98 208 1 133 1.08e-41 138
Msa0547050 AT5G26140.3 58.824 102 42 0 107 208 17 118 1.26e-37 127

Find 86 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATTTGGTTTA+TGG 0.095929 4_1:+39755833 Msa0547050:CDS
TCCTATTCCAATACTCAATT+TGG 0.158067 4_1:+39754068 Msa0547050:five_prime_UTR
GTTGATATATCTTATCAAAT+TGG 0.211531 4_1:+39761409 Msa0547050:three_prime_UTR
ACAATTATATGACGAGCTTT+AGG 0.212084 4_1:-39760422 None:intergenic
TTGTGGTGAAATTCTCAATT+TGG 0.262305 4_1:+39761346 Msa0547050:three_prime_UTR
AAAATAATAATATGTAAAAT+AGG 0.292806 4_1:-39754135 None:intergenic
CAATTATATGACGAGCTTTA+GGG 0.317659 4_1:-39760421 None:intergenic
GTATGAGTAGTTTAAGAGTT+TGG 0.320271 4_1:+39761248 Msa0547050:three_prime_UTR
TCTAAGCAAAGTTGGGAAAC+TGG 0.328148 4_1:+39760974 Msa0547050:CDS
AAGTACGTACCTCCATCTTT+TGG 0.348298 4_1:-39760472 None:intergenic
TGAAAGAATCAAAGTTTAAG+AGG 0.352776 4_1:+39754407 Msa0547050:CDS
GGTGTCAAGAAATATTGATT+TGG 0.365193 4_1:+39755826 Msa0547050:intron
TTGATATATCTTATCAAATT+GGG 0.367482 4_1:+39761410 Msa0547050:three_prime_UTR
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 4_1:+39755856 Msa0547050:CDS
GTAGTTTAAGAGTTTGGTAC+TGG 0.382374 4_1:+39761254 Msa0547050:three_prime_UTR
TTCCACATTTCTCTATATAT+AGG 0.383300 4_1:+39754308 Msa0547050:five_prime_UTR
CAGCATTGGTTTGATGGGGT+TGG 0.384600 4_1:+39755862 Msa0547050:CDS
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 4_1:+39755857 Msa0547050:CDS
GTTTCTCAAGCTGTTTATGA+TGG 0.421989 4_1:+39755884 Msa0547050:CDS
TCCCTCGTGTACAATTTGTA+AGG 0.429960 4_1:+39754250 Msa0547050:five_prime_UTR
CATCATAAAATTACCTCTCT+TGG 0.431675 4_1:-39756053 None:intergenic
TCTCTTGGCATCAGTGTCCT+TGG 0.437369 4_1:-39756038 None:intergenic
TATATGCATGAAGGTGGCTA+TGG 0.441783 4_1:+39760159 Msa0547050:intron
GTTTATGGAGGAGGCAGCAT+TGG 0.458836 4_1:+39755848 Msa0547050:CDS
GGAAACTTACTGGTTTATCA+TGG 0.459986 4_1:-39760230 None:intergenic
GATGCAACTCTTTCATGTTG+TGG 0.462188 4_1:-39760953 None:intergenic
GGTCTCACCAAATTGAGTAT+TGG 0.468635 4_1:-39754075 None:intergenic
AAAGATGCTGCTATTGAGCT+TGG 0.470913 4_1:+39754475 Msa0547050:CDS
ACCAAATTGAGTATTGGAAT+AGG 0.470971 4_1:-39754069 None:intergenic
CTAAGCAAAGTTGGGAAACT+GGG 0.478869 4_1:+39760975 Msa0547050:CDS
GTAAAGATGATTGTGTGGTT+TGG 0.481171 4_1:-39754096 None:intergenic
GTGGGATTGTTGAATGTAGA+TGG 0.481596 4_1:+39760341 Msa0547050:CDS
AGCTTCTTGAGGTCATAACT+TGG 0.481664 4_1:+39760193 Msa0547050:CDS
GATGGAGGTCGACATGTGAT+TGG 0.485208 4_1:+39755902 Msa0547050:CDS
ATTGATTTGGTTTATGGAGG+AGG 0.486097 4_1:+39755839 Msa0547050:CDS
AAGTTGGGAAACTGGGAAGC+TGG 0.495777 4_1:+39760982 Msa0547050:CDS
AGTTGCATCTAAGCAAAGTT+GGG 0.497061 4_1:+39760967 Msa0547050:CDS
AATAAAAGCATCAGAATGCT+TGG 0.500098 4_1:-39757852 None:intergenic
GAATGGGAACCAACCTGGTA+AGG 0.500409 4_1:-39757876 None:intergenic
GGAGAAGTGAAGGCAGTAGC+AGG 0.500561 4_1:+39757803 Msa0547050:CDS
AGTGGGTTTGTGCAGATCAC+TGG 0.500630 4_1:+39757770 Msa0547050:intron
TAGTTTAAGAGTTTGGTACT+GGG 0.505412 4_1:+39761255 Msa0547050:three_prime_UTR
GTCATAACTTGGGCTCAACT+TGG 0.508031 4_1:+39760204 Msa0547050:CDS
AATATTGATTTGGTTTATGG+AGG 0.510397 4_1:+39755836 Msa0547050:CDS
AGTTTAAGAGTTTGGTACTG+GGG 0.511599 4_1:+39761256 Msa0547050:three_prime_UTR
GTTTAAGAGTTTGGTACTGG+GGG 0.514645 4_1:+39761257 Msa0547050:three_prime_UTR
AAAAGAGCTTGTCCAAAAGA+TGG 0.518338 4_1:+39760460 Msa0547050:CDS
AAGAAATAAAGAGATGGAGG+AGG 0.519029 4_1:+39754375 Msa0547050:exon
TAGAAGAAATAAAGAGATGG+AGG 0.519415 4_1:+39754372 Msa0547050:exon
GAGTTGCATCTAAGCAAAGT+TGG 0.520245 4_1:+39760966 Msa0547050:CDS
GAGGCAGCATTGGTTTGATG+GGG 0.537940 4_1:+39755858 Msa0547050:CDS
ATTGACAAAGCTGTGGAGGA+AGG 0.543403 4_1:+39760389 Msa0547050:CDS
AGAGACAGTGGGAGAAGTGA+AGG 0.543939 4_1:+39757793 Msa0547050:CDS
GCATACAAATTGTGAAGGGT+TGG 0.544550 4_1:+39754337 Msa0547050:five_prime_UTR
TCTCAAGCTGTTTATGATGG+AGG 0.551173 4_1:+39755887 Msa0547050:CDS
TTATAGCTACTCTTGTTACC+AGG 0.556974 4_1:-39754454 None:intergenic
GCATCAAAGAAAAGCTGAGA+TGG 0.557994 4_1:+39757829 Msa0547050:CDS
GACACTTGAGGAGCTTCTTG+AGG 0.558323 4_1:+39760182 Msa0547050:CDS
GTGAAATTCTCAATTTGGAT+GGG 0.564398 4_1:+39761351 Msa0547050:three_prime_UTR
ATGGAGGTCGACATGTGATT+GGG 0.564949 4_1:+39755903 Msa0547050:CDS
CCACACAATCATCTTTACAT+AGG 0.565050 4_1:+39754101 Msa0547050:five_prime_UTR
GGTGAAATTCTCAATTTGGA+TGG 0.565075 4_1:+39761350 Msa0547050:three_prime_UTR
GAATAGAAGAAATAAAGAGA+TGG 0.565618 4_1:+39754369 Msa0547050:exon
ATCTTTCATTGACAAAGCTG+TGG 0.565707 4_1:+39760382 Msa0547050:CDS
CTCCTTACAAATTGTACACG+AGG 0.568592 4_1:-39754252 None:intergenic
CATTGTGACATCTCAAGTTG+TGG 0.575431 4_1:+39761016 Msa0547050:three_prime_UTR
GCTTCTTGAGGTCATAACTT+GGG 0.575878 4_1:+39760194 Msa0547050:CDS
ATATGCATGAAGGTGGCTAT+GGG 0.577892 4_1:+39760160 Msa0547050:intron
TATTGAGCTTGGAAATGAGT+TGG 0.583903 4_1:+39754486 Msa0547050:CDS
TTTCATTGACAAAGCTGTGG+AGG 0.587801 4_1:+39760385 Msa0547050:CDS
TAAGAAAGAATTATAGCTTG+AGG 0.597491 4_1:-39761086 None:intergenic
TCATCTTTACATAGGACCAC+GGG 0.606037 4_1:+39754109 Msa0547050:five_prime_UTR
CAGATCACTGGAGAGACAGT+GGG 0.608222 4_1:+39757782 Msa0547050:intron
ATCATCTTTACATAGGACCA+CGG 0.620297 4_1:+39754108 Msa0547050:five_prime_UTR
CACCTATATATAGAGAAATG+TGG 0.620764 4_1:-39754310 None:intergenic
ACTTGAGATGTCACAATGTG+AGG 0.626989 4_1:-39761011 None:intergenic
GCAGATCACTGGAGAGACAG+TGG 0.632705 4_1:+39757781 Msa0547050:intron
GTTGTGCATACAAATTGTGA+AGG 0.632971 4_1:+39754332 Msa0547050:five_prime_UTR
AAAGTCTTTGTCATCAATTG+TGG 0.643936 4_1:+39761329 Msa0547050:three_prime_UTR
AAGGACACTGATGCCAAGAG+AGG 0.647568 4_1:+39756040 Msa0547050:CDS
AGGTGGCTATGGGACACTTG+AGG 0.653214 4_1:+39760170 Msa0547050:intron
CCTATGTAAAGATGATTGTG+TGG 0.666612 4_1:-39754101 None:intergenic
AGAGCTTGTCCAAAAGATGG+AGG 0.667572 4_1:+39760463 Msa0547050:CDS
TTGTGCATACAAATTGTGAA+GGG 0.671489 4_1:+39754333 Msa0547050:five_prime_UTR
TATGTAAAATAGGAAACCCG+TGG 0.675227 4_1:-39754125 None:intergenic
TCCTTACAAATTGTACACGA+GGG 0.683887 4_1:-39754251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTCTTTTTTTTGA+AGG + chr4_1:39754740-39754759 Msa0547050:intron 10.0%
!!! TTGTTTTATAACTATATTAT+TGG + chr4_1:39755493-39755512 Msa0547050:intron 10.0%
!! CAAAATAAATAAAAACAATA+AGG - chr4_1:39756399-39756418 None:intergenic 10.0%
!!! CTTATTGTTTTTATTTATTT+TGG + chr4_1:39756397-39756416 Msa0547050:intron 10.0%
!! AATTAAAAATAAAAACAATG+AGG - chr4_1:39757467-39757486 None:intergenic 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG + chr4_1:39758127-39758146 Msa0547050:intron 10.0%
!!! ATCTTTTATTTTTAAATTGT+TGG + chr4_1:39758498-39758517 Msa0547050:intron 10.0%
!!! ATATTTAGACATATTATTTT+TGG + chr4_1:39758773-39758792 Msa0547050:intron 10.0%
!!! TTTTTTTTTTGTTATAAAAG+AGG + chr4_1:39758862-39758881 Msa0547050:intron 10.0%
!!! TTTTTTTTTGTTATAAAAGA+GGG + chr4_1:39758863-39758882 Msa0547050:intron 10.0%
!!! AAAAAAAATTACTACAATTT+TGG + chr4_1:39759081-39759100 Msa0547050:intron 10.0%
!! CCAAAAAATAATTATTTAAA+TGG - chr4_1:39759726-39759745 None:intergenic 10.0%
!!! CCATTTAAATAATTATTTTT+TGG + chr4_1:39759723-39759742 Msa0547050:intron 10.0%
!! TAAAAAACATAAAAAAGTTA+AGG - chr4_1:39760013-39760032 None:intergenic 10.0%
!!! GTTTTTTAAAATAAAAACTA+AGG + chr4_1:39759856-39759875 Msa0547050:intron 10.0%
!!! GTTTTTTAAAATAAAAACTA+AGG - chr4_1:39759856-39759875 None:intergenic 10.0%
!! TAAAAAACATAAAAAAGTTA+AGG + chr4_1:39760013-39760032 Msa0547050:intron 10.0%
!!! GTTTAACTTTTTAATAAAAA+TGG - chr4_1:39760269-39760288 None:intergenic 10.0%
!!! ATAATCTATAAATTGAATTT+TGG + chr4_1:39760307-39760326 Msa0547050:intron 10.0%
!!! TTAAAAATGTTTTCAATATA+TGG + chr4_1:39760691-39760710 Msa0547050:intron 10.0%
!!! TAGCTTTTTTTTTTTTTTTT+TGG + chr4_1:39761114-39761133 Msa0547050:three_prime_UTR 10.0%
!!! TTAACATTTAATGTTTTGTT+TGG + chr4_1:39754764-39754783 Msa0547050:intron 15.0%
!! TAATTTGACTAAGTATAAAA+GGG - chr4_1:39755052-39755071 None:intergenic 15.0%
!!! TTTTTACAAGCAATTTTTTA+GGG - chr4_1:39755744-39755763 None:intergenic 15.0%
!!! TTGTTAATTAAATCCTTTTT+TGG + chr4_1:39755780-39755799 Msa0547050:intron 15.0%
!!! TGTTAATTAAATCCTTTTTT+GGG + chr4_1:39755781-39755800 Msa0547050:intron 15.0%
!!! TTACAATAACTGTATTATTT+TGG - chr4_1:39757180-39757199 None:intergenic 15.0%
!!! TTTTTGAATTTCTTTTTCTT+TGG + chr4_1:39757309-39757328 Msa0547050:intron 15.0%
!! CAAAACAATCTATATATAAT+TGG + chr4_1:39757389-39757408 Msa0547050:intron 15.0%
!!! TTGTAATTTGTGTAATAATT+TGG + chr4_1:39757729-39757748 Msa0547050:intron 15.0%
!! TATGAATTAGTAGAAAAATA+TGG - chr4_1:39757979-39757998 None:intergenic 15.0%
!! AATTATTAAAAGAAAGAGAA+TGG + chr4_1:39758070-39758089 Msa0547050:intron 15.0%
!! AATAGATAATAAGGATAATT+TGG - chr4_1:39758104-39758123 None:intergenic 15.0%
!! AAACTAACAAATAGATAATA+AGG - chr4_1:39758113-39758132 None:intergenic 15.0%
!!! AAAGAATTTTGATTTACATT+GGG - chr4_1:39758840-39758859 None:intergenic 15.0%
!! ATTCAAACTAATAAAACAAA+CGG - chr4_1:39759137-39759156 None:intergenic 15.0%
!!! AAATTTTTGCTTATAATAAC+CGG - chr4_1:39759218-39759237 None:intergenic 15.0%
!!! AAAATATTTTAACGCATTTT+TGG - chr4_1:39759475-39759494 None:intergenic 15.0%
!!! AAAAATGCGTTAAAATATTT+TGG + chr4_1:39759474-39759493 Msa0547050:intron 15.0%
!!! TATAAATTGAATTTTGGTTT+TGG + chr4_1:39760313-39760332 Msa0547050:intron 15.0%
!!! ATGTATCTTTTTCTTTTTAA+AGG + chr4_1:39761382-39761401 Msa0547050:three_prime_UTR 15.0%
!! TTGATATATCTTATCAAATT+GGG + chr4_1:39761410-39761429 Msa0547050:three_prime_UTR 15.0%
!!! GTTTGTTTTCTACTTTAATA+TGG - chr4_1:39754195-39754214 None:intergenic 20.0%
!! CTAATTTGACTAAGTATAAA+AGG - chr4_1:39755053-39755072 None:intergenic 20.0%
!!! AAATGGTTTGTATATATAGA+GGG - chr4_1:39755124-39755143 None:intergenic 20.0%
!!! TAAATGGTTTGTATATATAG+AGG - chr4_1:39755125-39755144 None:intergenic 20.0%
!!! TCTTCAACACTTTTATTTTT+TGG - chr4_1:39755202-39755221 None:intergenic 20.0%
!! GAAAAAAAAATGTATTTGAG+AGG - chr4_1:39755595-39755614 None:intergenic 20.0%
!!! TCATTTTGTAGACATTAAAT+TGG - chr4_1:39755676-39755695 None:intergenic 20.0%
!!! CTTTTTACAAGCAATTTTTT+AGG - chr4_1:39755745-39755764 None:intergenic 20.0%
!!! ATTGTTTTGATGTCTTAAAA+AGG + chr4_1:39755805-39755824 Msa0547050:intron 20.0%
!!! AGAAATATTGATTTGGTTTA+TGG + chr4_1:39755833-39755852 Msa0547050:CDS 20.0%
!!! TTTGATAATTTTTTCTCCTA+TGG - chr4_1:39756111-39756130 None:intergenic 20.0%
!! ATTATACCCATTAAAAAACT+TGG + chr4_1:39756463-39756482 Msa0547050:intron 20.0%
!!! AAAAGTCCAAGTTTTTTAAT+GGG - chr4_1:39756472-39756491 None:intergenic 20.0%
!!! TAAAAGTCCAAGTTTTTTAA+TGG - chr4_1:39756473-39756492 None:intergenic 20.0%
!! AAAAAGATGATACATAGAAT+TGG - chr4_1:39756773-39756792 None:intergenic 20.0%
!! GAATGGAAAATCAATATATT+TGG - chr4_1:39756823-39756842 None:intergenic 20.0%
!! ACACAAATATAAAAAGAGAA+TGG - chr4_1:39756840-39756859 None:intergenic 20.0%
!!! TTTATTTTGATGTCACATTT+TGG + chr4_1:39756911-39756930 Msa0547050:intron 20.0%
!! TTGACAAAAGAATCTAAAAA+AGG - chr4_1:39757037-39757056 None:intergenic 20.0%
!! ATTAATATTCCCCATATTAT+TGG - chr4_1:39757102-39757121 None:intergenic 20.0%
!! ACAGTTATTGTAATTGTAAT+CGG + chr4_1:39757187-39757206 Msa0547050:intron 20.0%
!!! ACATCAAGTATTTAAAACAT+GGG + chr4_1:39757572-39757591 Msa0547050:intron 20.0%
!! AATAATGTATATTGTCAACT+AGG - chr4_1:39757939-39757958 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr4_1:39758190-39758209 Msa0547050:intron 20.0%
!!! TTTTTGGTATGTTTTTACTT+CGG + chr4_1:39758789-39758808 Msa0547050:intron 20.0%
!!! GAAAGAATTTTGATTTACAT+TGG - chr4_1:39758896-39758915 None:intergenic 20.0%
!! AGTTATTCAAAAATTGATGT+CGG + chr4_1:39759675-39759694 Msa0547050:intron 20.0%
!!! TTTTTAGTTGTATATGTAGA+TGG - chr4_1:39759793-39759812 None:intergenic 20.0%
!! ATCTACATATACAACTAAAA+AGG + chr4_1:39759792-39759811 Msa0547050:intron 20.0%
!! TAAGGAAAAATACAAATCAA+CGG - chr4_1:39759826-39759845 None:intergenic 20.0%
!!! AAATTATTTCAAGTTCTCAA+CGG - chr4_1:39759955-39759974 None:intergenic 20.0%
!!! AAATTATTTCAAGTTCTCAA+CGG + chr4_1:39759955-39759974 Msa0547050:intron 20.0%
!! TAAAAATCGTAGCATTAAAA+TGG - chr4_1:39760570-39760589 None:intergenic 20.0%
!! GATTTGATATCTCTTAAATA+TGG + chr4_1:39760667-39760686 Msa0547050:intron 20.0%
!!! ATTTTAGTTAATGCTGATTT+TGG + chr4_1:39760749-39760768 Msa0547050:intron 20.0%
!!! TTTTTTTTTTTTGGTTAGTG+TGG + chr4_1:39761123-39761142 Msa0547050:three_prime_UTR 20.0%
!!! ATGTGAATTATTGTTTTTTC+AGG + chr4_1:39761174-39761193 Msa0547050:three_prime_UTR 20.0%
!!! TCTAACATCTATTCATTTTT+TGG - chr4_1:39761217-39761236 None:intergenic 20.0%
!! AAAAAATGAATAGATGTTAG+AGG + chr4_1:39761216-39761235 Msa0547050:three_prime_UTR 20.0%
!! GTTGATATATCTTATCAAAT+TGG + chr4_1:39761409-39761428 Msa0547050:three_prime_UTR 20.0%
! TTCCACATTTCTCTATATAT+AGG + chr4_1:39754308-39754327 Msa0547050:five_prime_UTR 25.0%
! GAATAGAAGAAATAAAGAGA+TGG + chr4_1:39754369-39754388 Msa0547050:exon 25.0%
! TGAAAGAATCAAAGTTTAAG+AGG + chr4_1:39754407-39754426 Msa0547050:CDS 25.0%
! TTGTATCTTAGAATTTAGAC+CGG + chr4_1:39754558-39754577 Msa0547050:intron 25.0%
! TGTTAAATTTCCAAGAAGAA+TGG - chr4_1:39754720-39754739 None:intergenic 25.0%
!!! TAATGTTTTGTTTGGTGTTT+TGG + chr4_1:39754772-39754791 Msa0547050:intron 25.0%
!!! GTTTTGATTAAACCTTTGTT+TGG + chr4_1:39754842-39754861 Msa0547050:intron 25.0%
!! AATTTTCATTACGAACCTTT+TGG + chr4_1:39754950-39754969 Msa0547050:intron 25.0%
!!! CACATACTTTCTTTGTTTTT+GGG - chr4_1:39755290-39755309 None:intergenic 25.0%
!! CAAAAACAAAGAAAGTATGT+GGG + chr4_1:39755289-39755308 Msa0547050:intron 25.0%
!!! AAAGTATCTATTAGCTTTAC+CGG + chr4_1:39755519-39755538 Msa0547050:intron 25.0%
!! TGTACATGAGATTTTACTTA+AGG + chr4_1:39755627-39755646 Msa0547050:intron 25.0%
!! GTACATGAGATTTTACTTAA+GGG + chr4_1:39755628-39755647 Msa0547050:intron 25.0%
! ATCAAAACAATACCCAAAAA+AGG - chr4_1:39755796-39755815 None:intergenic 25.0%
!!! AATATTGATTTGGTTTATGG+AGG + chr4_1:39755836-39755855 Msa0547050:CDS 25.0%
!! TTCTTCATTATGATTTGTCT+TGG + chr4_1:39755941-39755960 Msa0547050:intron 25.0%
!!! TATTGTCATTGTATTTTTGC+AGG + chr4_1:39756009-39756028 Msa0547050:intron 25.0%
!!! ATTGTCATTGTATTTTTGCA+GGG + chr4_1:39756010-39756029 Msa0547050:intron 25.0%
!! AGAGGTAATTTTATGATGTT+TGG + chr4_1:39756058-39756077 Msa0547050:intron 25.0%
! TTTATGATGTTTGGATTTGA+AGG + chr4_1:39756067-39756086 Msa0547050:intron 25.0%
!! TGATTATAGGTTAGATTTTG+AGG + chr4_1:39756199-39756218 Msa0547050:intron 25.0%
!! CATTTATTATTGTGATAGTG+AGG + chr4_1:39756558-39756577 Msa0547050:intron 25.0%
!! GTGTACTTTATTTGATCAAA+TGG + chr4_1:39756672-39756691 Msa0547050:intron 25.0%
! ATATTTGGATAACAAAAGCA+AGG - chr4_1:39756808-39756827 None:intergenic 25.0%
! TATATTTGTGTGATTCATGT+AGG + chr4_1:39756849-39756868 Msa0547050:intron 25.0%
!! AATTCCCATTTTCTTAACAT+TGG + chr4_1:39757140-39757159 Msa0547050:intron 25.0%
!! ATATATAATTGGTTCAACCA+CGG + chr4_1:39757400-39757419 Msa0547050:intron 25.0%
! AAACAAATTGAATCATGACT+AGG + chr4_1:39757528-39757547 Msa0547050:intron 25.0%
!!! TGTTTTAAATACTTGATGTG+AGG - chr4_1:39757571-39757590 None:intergenic 25.0%
!! CACATCAAGTATTTAAAACA+TGG + chr4_1:39757571-39757590 Msa0547050:intron 25.0%
!!! ATAACTTGGCATTTTTTCAA+AGG - chr4_1:39757624-39757643 None:intergenic 25.0%
! TGCAAAAATAGTAATGATGA+GGG - chr4_1:39757676-39757695 None:intergenic 25.0%
! ATGCAAAAATAGTAATGATG+AGG - chr4_1:39757677-39757696 None:intergenic 25.0%
! CAAAGATAAAACATATGCAT+TGG + chr4_1:39758376-39758395 Msa0547050:intron 25.0%
! AAAATAAGATCGATCCAAAT+GGG - chr4_1:39758536-39758555 None:intergenic 25.0%
! TAAAATAAGATCGATCCAAA+TGG - chr4_1:39758537-39758556 None:intergenic 25.0%
!! TTTTGGCAAAAAATTACCAA+AGG + chr4_1:39759098-39759117 Msa0547050:intron 25.0%
! AAAAAATTACCAAAGGTTTG+AGG + chr4_1:39759105-39759124 Msa0547050:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr4_1:39759290-39759309 None:intergenic 25.0%
!!! AATACTGGGTTGTTTTTTTA+AGG - chr4_1:39759555-39759574 None:intergenic 25.0%
! ATACAACTAAAAAGGATACA+TGG + chr4_1:39759800-39759819 Msa0547050:intron 25.0%
! AATAAAAATGGCAAGATTGA+GGG - chr4_1:39760257-39760276 None:intergenic 25.0%
! TAATAAAAATGGCAAGATTG+AGG - chr4_1:39760258-39760277 None:intergenic 25.0%
!!! TTGAATTTTGGTTTTGGAAA+AGG + chr4_1:39760319-39760338 Msa0547050:intron 25.0%
! TTTGGCATAAACTATACATA+GGG - chr4_1:39760819-39760838 None:intergenic 25.0%
!! TTTTGGCATAAACTATACAT+AGG - chr4_1:39760820-39760839 None:intergenic 25.0%
!! ACGATGAATTATCACAATTT+TGG - chr4_1:39760837-39760856 None:intergenic 25.0%
!!! AGATTTGATTTTACCCTTAT+AGG + chr4_1:39760922-39760941 Msa0547050:intron 25.0%
! TAAGAAAGAATTATAGCTTG+AGG - chr4_1:39761089-39761108 None:intergenic 25.0%
TCCTATTCCAATACTCAATT+TGG + chr4_1:39754068-39754087 Msa0547050:five_prime_UTR 30.0%
!! ACCAAATTGAGTATTGGAAT+AGG - chr4_1:39754072-39754091 None:intergenic 30.0%
! TCTTTCTCTCTTATCTTTTC+TGG + chr4_1:39754157-39754176 Msa0547050:five_prime_UTR 30.0%
!! TTATCTTTTCTGGTACAATC+AGG + chr4_1:39754167-39754186 Msa0547050:five_prime_UTR 30.0%
!! TATCTTTTCTGGTACAATCA+GGG + chr4_1:39754168-39754187 Msa0547050:five_prime_UTR 30.0%
CACCTATATATAGAGAAATG+TGG - chr4_1:39754313-39754332 None:intergenic 30.0%
TTGTGCATACAAATTGTGAA+GGG + chr4_1:39754333-39754352 Msa0547050:five_prime_UTR 30.0%
TAGAAGAAATAAAGAGATGG+AGG + chr4_1:39754372-39754391 Msa0547050:exon 30.0%
!!! AAGAGGATTTGTGTTTTTTG+TGG + chr4_1:39754424-39754443 Msa0547050:CDS 30.0%
!! TATTACAAGCGGATTTTGTA+GGG - chr4_1:39754589-39754608 None:intergenic 30.0%
AAATTTCCAAGAAGAATGGA+TGG - chr4_1:39754716-39754735 None:intergenic 30.0%
TGAACTACTTAATCTCATCA+AGG + chr4_1:39754914-39754933 Msa0547050:intron 30.0%
!!! CAGTTTCTCAACTTTTTTCA+TGG + chr4_1:39755097-39755116 Msa0547050:intron 30.0%
GTGAAGTTGTGAAAGATAAA+TGG - chr4_1:39755141-39755160 None:intergenic 30.0%
ACTTCACATAGATAAAGTTG+TGG + chr4_1:39755154-39755173 Msa0547050:intron 30.0%
!!! CCACATACTTTCTTTGTTTT+TGG - chr4_1:39755291-39755310 None:intergenic 30.0%
! CCAAAAACAAAGAAAGTATG+TGG + chr4_1:39755288-39755307 Msa0547050:intron 30.0%
! GGTGTCAAGAAATATTGATT+TGG + chr4_1:39755826-39755845 Msa0547050:intron 30.0%
! TTCATTATGATTTGTCTTGG+TGG + chr4_1:39755944-39755963 Msa0547050:intron 30.0%
CATCATAAAATTACCTCTCT+TGG - chr4_1:39756056-39756075 None:intergenic 30.0%
CAAATATACCTTTCTCCTTT+CGG + chr4_1:39756127-39756146 Msa0547050:intron 30.0%
TTTGATACAACCTTCATTCT+AGG - chr4_1:39756332-39756351 None:intergenic 30.0%
! TCAGCATCACATTCAATTTT+TGG + chr4_1:39756352-39756371 Msa0547050:intron 30.0%
! CAGCATCACATTCAATTTTT+GGG + chr4_1:39756353-39756372 Msa0547050:intron 30.0%
! TATTATTGTGATAGTGAGGT+TGG + chr4_1:39756562-39756581 Msa0547050:intron 30.0%
CATATTGTGGTAGAAAGATA+AGG - chr4_1:39756728-39756747 None:intergenic 30.0%
AGCAAAATAAGCACATATTG+TGG - chr4_1:39756741-39756760 None:intergenic 30.0%
ATTCATGTAGGTTTACAAGT+CGG + chr4_1:39756861-39756880 Msa0547050:intron 30.0%
TCGGTATTGTTCCAATAATA+TGG + chr4_1:39757088-39757107 Msa0547050:intron 30.0%
CGGTATTGTTCCAATAATAT+GGG + chr4_1:39757089-39757108 Msa0547050:intron 30.0%
GGTATTGTTCCAATAATATG+GGG + chr4_1:39757090-39757109 Msa0547050:intron 30.0%
GGATCCAATGTTAAGAAAAT+GGG - chr4_1:39757147-39757166 None:intergenic 30.0%
TGGATCCAATGTTAAGAAAA+TGG - chr4_1:39757148-39757167 None:intergenic 30.0%
!!! TATTATTTTGGCAGTCAATC+TGG - chr4_1:39757168-39757187 None:intergenic 30.0%
TGTAATTCTATCCAGTTATG+AGG - chr4_1:39757438-39757457 None:intergenic 30.0%
! ATTATTCTTTTGTGTGTGAG+TGG + chr4_1:39757752-39757771 Msa0547050:intron 30.0%
! TTATTCTTTTGTGTGTGAGT+GGG + chr4_1:39757753-39757772 Msa0547050:intron 30.0%
!! AATAAAAGCATCAGAATGCT+TGG - chr4_1:39757855-39757874 None:intergenic 30.0%
GAGTAGAATATTTGTGGAAT+GGG - chr4_1:39757895-39757914 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr4_1:39758021-39758040 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr4_1:39758022-39758041 Msa0547050:intron 30.0%
GTAGTGTGCAGAATATTAAT+TGG + chr4_1:39758152-39758171 Msa0547050:intron 30.0%
AGTATCATGTAAGATGTTGT+TGG + chr4_1:39758285-39758304 Msa0547050:intron 30.0%
!!! TTTTGATTTACATTGGGCTT+TGG - chr4_1:39758889-39758908 None:intergenic 30.0%
GACATCTAAGTTCACAAATA+AGG + chr4_1:39758939-39758958 Msa0547050:intron 30.0%
! TAATATCCACTTGTTACGTT+CGG - chr4_1:39759170-39759189 None:intergenic 30.0%
! TTTTGCTTATAATAACCGGA+GGG - chr4_1:39759214-39759233 None:intergenic 30.0%
! TTTTTGCTTATAATAACCGG+AGG - chr4_1:39759215-39759234 None:intergenic 30.0%
TTTCATGGGGTAAATTCAAT+CGG - chr4_1:39759448-39759467 None:intergenic 30.0%
!!! CATTTTTGGTGATTTTCATG+GGG - chr4_1:39759461-39759480 None:intergenic 30.0%
!!! GCATTTTTGGTGATTTTCAT+GGG - chr4_1:39759462-39759481 None:intergenic 30.0%
TCTTCCACATCATAAATACT+GGG - chr4_1:39759569-39759588 None:intergenic 30.0%
ATCTTCCACATCATAAATAC+TGG - chr4_1:39759570-39759589 None:intergenic 30.0%
!! ACATATATTCTGAAGCTGTA+AGG + chr4_1:39760087-39760106 Msa0547050:intron 30.0%
TATGTCCATTATATGCATGA+AGG + chr4_1:39760150-39760169 Msa0547050:intron 30.0%
!!! AATTTTGGTTTTGGAAAAGG+TGG + chr4_1:39760322-39760341 Msa0547050:intron 30.0%
!!! ATTTTGGTTTTGGAAAAGGT+GGG + chr4_1:39760323-39760342 Msa0547050:intron 30.0%
CAATTATATGACGAGCTTTA+GGG - chr4_1:39760424-39760443 None:intergenic 30.0%
ACAATTATATGACGAGCTTT+AGG - chr4_1:39760425-39760444 None:intergenic 30.0%
CAAATCATTATTAACCCGTT+TGG - chr4_1:39760653-39760672 None:intergenic 30.0%
GTATGAGTAGTTTAAGAGTT+TGG + chr4_1:39761248-39761267 Msa0547050:three_prime_UTR 30.0%
TAGTTTAAGAGTTTGGTACT+GGG + chr4_1:39761255-39761274 Msa0547050:three_prime_UTR 30.0%
AAAGTCTTTGTCATCAATTG+TGG + chr4_1:39761329-39761348 Msa0547050:three_prime_UTR 30.0%
TTGTGGTGAAATTCTCAATT+TGG + chr4_1:39761346-39761365 Msa0547050:three_prime_UTR 30.0%
GTGAAATTCTCAATTTGGAT+GGG + chr4_1:39761351-39761370 Msa0547050:three_prime_UTR 30.0%
GTAAAGATGATTGTGTGGTT+TGG - chr4_1:39754099-39754118 None:intergenic 35.0%
CCTATGTAAAGATGATTGTG+TGG - chr4_1:39754104-39754123 None:intergenic 35.0%
CCACACAATCATCTTTACAT+AGG + chr4_1:39754101-39754120 Msa0547050:five_prime_UTR 35.0%
ATCATCTTTACATAGGACCA+CGG + chr4_1:39754108-39754127 Msa0547050:five_prime_UTR 35.0%
TATGTAAAATAGGAAACCCG+TGG - chr4_1:39754128-39754147 None:intergenic 35.0%
TCCTTACAAATTGTACACGA+GGG - chr4_1:39754254-39754273 None:intergenic 35.0%
GTTGTGCATACAAATTGTGA+AGG + chr4_1:39754332-39754351 Msa0547050:five_prime_UTR 35.0%
AAGAAATAAAGAGATGGAGG+AGG + chr4_1:39754375-39754394 Msa0547050:exon 35.0%
TTATAGCTACTCTTGTTACC+AGG - chr4_1:39754457-39754476 None:intergenic 35.0%
TATTGAGCTTGGAAATGAGT+TGG + chr4_1:39754486-39754505 Msa0547050:CDS 35.0%
!! CTATTACAAGCGGATTTTGT+AGG - chr4_1:39754590-39754609 None:intergenic 35.0%
CTACAAAATCCGCTTGTAAT+AGG + chr4_1:39754588-39754607 Msa0547050:intron 35.0%
TGGTATCAAGAAACTCATCA+AGG - chr4_1:39754872-39754891 None:intergenic 35.0%
AGTAGTTCAATTGCGAATGA+AGG - chr4_1:39754903-39754922 None:intergenic 35.0%
! TTTCATTACGAACCTTTTGG+TGG + chr4_1:39754953-39754972 Msa0547050:intron 35.0%
!! ATTGATTTGGTTTATGGAGG+AGG + chr4_1:39755839-39755858 Msa0547050:CDS 35.0%
GTTTCTCAAGCTGTTTATGA+TGG + chr4_1:39755884-39755903 Msa0547050:CDS 35.0%
! ATTTTTGCAGGGTTATTCCA+AGG + chr4_1:39756021-39756040 Msa0547050:intron 35.0%
ATGACCAAACAAGTTACCAT+AGG + chr4_1:39756092-39756111 Msa0547050:intron 35.0%
!! TTCTCCTATGGTAACTTGTT+TGG - chr4_1:39756099-39756118 None:intergenic 35.0%
AATCACATGTGATCCATCAT+GGG - chr4_1:39756184-39756203 None:intergenic 35.0%
TAATCACATGTGATCCATCA+TGG - chr4_1:39756185-39756204 None:intergenic 35.0%
GATGGATCACATGTGATTAT+AGG + chr4_1:39756186-39756205 Msa0547050:intron 35.0%
! TGATGATGATGATGTTGGAT+GGG - chr4_1:39756299-39756318 None:intergenic 35.0%
!! TTGATGATGATGATGTTGGA+TGG - chr4_1:39756300-39756319 None:intergenic 35.0%
! CAGATTTGAGTGTTTGAGTT+TGG + chr4_1:39756519-39756538 Msa0547050:intron 35.0%
ATTGTGGTAGAAAGATAAGG+TGG - chr4_1:39756725-39756744 None:intergenic 35.0%
TTTGGATAACAAAAGCAAGG+TGG - chr4_1:39756805-39756824 None:intergenic 35.0%
AACTTACCTATCATTACACC+TGG + chr4_1:39756946-39756965 Msa0547050:intron 35.0%
TAGTCTCCTTCGAAAAACAT+TGG - chr4_1:39757337-39757356 None:intergenic 35.0%
CAAGTGGAAATCGTATAACT+TGG - chr4_1:39757638-39757657 None:intergenic 35.0%
AGCACGAATCATTCACAAAA+AGG + chr4_1:39757703-39757722 Msa0547050:intron 35.0%
GGAGTAGAATATTTGTGGAA+TGG - chr4_1:39757896-39757915 None:intergenic 35.0%
!! CTAGGTCATATTTTGAGGAA+CGG - chr4_1:39757921-39757940 None:intergenic 35.0%
! GTCAACTAGGTCATATTTTG+AGG - chr4_1:39757926-39757945 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr4_1:39758262-39758281 Msa0547050:intron 35.0%
TCAACTAGGTCATCTATTGA+GGG + chr4_1:39758413-39758432 Msa0547050:intron 35.0%
TTCGGAATTCTGATGCAATT+TGG + chr4_1:39758807-39758826 Msa0547050:intron 35.0%
TCGGAATTCTGATGCAATTT+GGG + chr4_1:39758808-39758827 Msa0547050:intron 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4_1:39759328-39759347 Msa0547050:intron 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4_1:39759329-39759348 Msa0547050:intron 35.0%
!!! CGCATTTTTGGTGATTTTCA+TGG - chr4_1:39759463-39759482 None:intergenic 35.0%
AGTTTCTTGCACGTCTAATT+TGG - chr4_1:39759510-39759529 None:intergenic 35.0%
ACAACCCAGTATTTATGATG+TGG + chr4_1:39759562-39759581 Msa0547050:intron 35.0%
!! TGGAAGATTAGTCTTGTCTT+GGG + chr4_1:39759582-39759601 Msa0547050:intron 35.0%
AATAATGCTAGACTGCTAGA+GGG - chr4_1:39759628-39759647 None:intergenic 35.0%
TTCTCAACGGATGGAAAAAA+AGG - chr4_1:39759968-39759987 None:intergenic 35.0%
!! TATTTCAAGTTCTCAACGGA+TGG - chr4_1:39759959-39759978 None:intergenic 35.0%
!! TATTTCAAGTTCTCAACGGA+TGG + chr4_1:39759959-39759978 Msa0547050:intron 35.0%
TTCTCAACGGATGGAAAAAA+AGG + chr4_1:39759968-39759987 Msa0547050:intron 35.0%
!! GGAAACTTACTGGTTTATCA+TGG - chr4_1:39760233-39760252 None:intergenic 35.0%
ATCTTTCATTGACAAAGCTG+TGG + chr4_1:39760382-39760401 Msa0547050:CDS 35.0%
AAAAGAGCTTGTCCAAAAGA+TGG + chr4_1:39760460-39760479 Msa0547050:CDS 35.0%
ATGCTGAAACGACATTTGAA+CGG + chr4_1:39760604-39760623 Msa0547050:intron 35.0%
CATTATTAACCCGTTTGGTT+TGG - chr4_1:39760648-39760667 None:intergenic 35.0%
TCTTTCGTGCATGTTTGAAT+AGG - chr4_1:39760877-39760896 None:intergenic 35.0%
!! TGTGGAGAGTATTCCTATAA+GGG - chr4_1:39760938-39760957 None:intergenic 35.0%
!! TTGTGGAGAGTATTCCTATA+AGG - chr4_1:39760939-39760958 None:intergenic 35.0%
AGTTGCATCTAAGCAAAGTT+GGG + chr4_1:39760967-39760986 Msa0547050:CDS 35.0%
!!! TTTTTGGTTAGTGTGGACTA+TGG + chr4_1:39761130-39761149 Msa0547050:three_prime_UTR 35.0%
GTAGTTTAAGAGTTTGGTAC+TGG + chr4_1:39761254-39761273 Msa0547050:three_prime_UTR 35.0%
AGTTTAAGAGTTTGGTACTG+GGG + chr4_1:39761256-39761275 Msa0547050:three_prime_UTR 35.0%
GGTGAAATTCTCAATTTGGA+TGG + chr4_1:39761350-39761369 Msa0547050:three_prime_UTR 35.0%
GGTCTCACCAAATTGAGTAT+TGG - chr4_1:39754078-39754097 None:intergenic 40.0%
TCATCTTTACATAGGACCAC+GGG + chr4_1:39754109-39754128 Msa0547050:five_prime_UTR 40.0%
TCCCTCGTGTACAATTTGTA+AGG + chr4_1:39754250-39754269 Msa0547050:five_prime_UTR 40.0%
CTCCTTACAAATTGTACACG+AGG - chr4_1:39754255-39754274 None:intergenic 40.0%
GCATACAAATTGTGAAGGGT+TGG + chr4_1:39754337-39754356 Msa0547050:five_prime_UTR 40.0%
!!! GTTTTTTGTGGTAGTAGTCC+TGG + chr4_1:39754436-39754455 Msa0547050:CDS 40.0%
AAAGATGCTGCTATTGAGCT+TGG + chr4_1:39754475-39754494 Msa0547050:CDS 40.0%
GACATCACTCCTATTACAAG+CGG - chr4_1:39754600-39754619 None:intergenic 40.0%
!! AAGAATGGATGGTGGACATT+AGG - chr4_1:39754705-39754724 None:intergenic 40.0%
TTTCCAAGAAGAATGGATGG+TGG - chr4_1:39754713-39754732 None:intergenic 40.0%
CATCAAGGAACACCAAACAA+AGG - chr4_1:39754857-39754876 None:intergenic 40.0%
TGCGAATGAAGGAATTGATG+TGG - chr4_1:39754892-39754911 None:intergenic 40.0%
!! ATTACGAACCTTTTGGTGGT+GGG + chr4_1:39754957-39754976 Msa0547050:intron 40.0%
AGAATTTCGCTGACCACTTT+CGG + chr4_1:39755559-39755578 Msa0547050:intron 40.0%
TCTCAAGCTGTTTATGATGG+AGG + chr4_1:39755887-39755906 Msa0547050:CDS 40.0%
!! ATGATTTGTCTTGGTGGTGA+TGG + chr4_1:39755950-39755969 Msa0547050:intron 40.0%
AAATGTCACCGAAAGGAGAA+AGG - chr4_1:39756138-39756157 None:intergenic 40.0%
CTTTCGGTGACATTTCACAT+GGG + chr4_1:39756143-39756162 Msa0547050:intron 40.0%
AGGTGAAAATCTTCCCATGA+TGG + chr4_1:39756168-39756187 Msa0547050:intron 40.0%
!! AAAGAGAAGTGCTATGGTGT+GGG - chr4_1:39756250-39756269 None:intergenic 40.0%
!! GAGAAGAAAGAGAAGTGCTA+TGG - chr4_1:39756256-39756275 None:intergenic 40.0%
! GATGATGATGATGTTGGATG+GGG - chr4_1:39756298-39756317 None:intergenic 40.0%
!! GAGGTTGATGATGATGATGT+TGG - chr4_1:39756304-39756323 None:intergenic 40.0%
ACCTCAAACACCTAGAATGA+AGG + chr4_1:39756319-39756338 Msa0547050:intron 40.0%
ACCTTCATTCTAGGTGTTTG+AGG - chr4_1:39756323-39756342 None:intergenic 40.0%
!! TTGGTAGTGTTTGATGTTGC+TGG + chr4_1:39756581-39756600 Msa0547050:intron 40.0%
! TGGTAGTGTTTGATGTTGCT+GGG + chr4_1:39756582-39756601 Msa0547050:intron 40.0%
GATAAGGTGGCATTTCACAT+GGG - chr4_1:39756712-39756731 None:intergenic 40.0%
AGATAAGGTGGCATTTCACA+TGG - chr4_1:39756713-39756732 None:intergenic 40.0%
AGATTGCCAGGTGTAATGAT+AGG - chr4_1:39756955-39756974 None:intergenic 40.0%
TATCATTACACCTGGCAATC+TGG + chr4_1:39756954-39756973 Msa0547050:intron 40.0%
ATCATTACACCTGGCAATCT+GGG + chr4_1:39756955-39756974 Msa0547050:intron 40.0%
!!! TTGGTGCCAATGTTTTTCGA+AGG + chr4_1:39757328-39757347 Msa0547050:intron 40.0%
!! CGAAGGAGACTAGTATTGAT+CGG + chr4_1:39757345-39757364 Msa0547050:intron 40.0%
GCATCAAAGAAAAGCTGAGA+TGG + chr4_1:39757829-39757848 Msa0547050:CDS 40.0%
! GATGCTTTTATTGCCTTACC+AGG + chr4_1:39757863-39757882 Msa0547050:CDS 40.0%
! CTTTTATTGCCTTACCAGGT+TGG + chr4_1:39757867-39757886 Msa0547050:intron 40.0%
CGGATGGAGTAGAATATTTG+TGG - chr4_1:39757901-39757920 None:intergenic 40.0%
!! GTCATATTTTGAGGAACGGA+TGG - chr4_1:39757917-39757936 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr4_1:39758017-39758036 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr4_1:39758261-39758280 Msa0547050:intron 40.0%
! ATATGCATTGGTACGTGTGT+CGG + chr4_1:39758388-39758407 Msa0547050:intron 40.0%
GTCAACTAGGTCATCTATTG+AGG + chr4_1:39758412-39758431 Msa0547050:intron 40.0%
AGATAAGAACATACACCCTC+CGG + chr4_1:39759196-39759215 Msa0547050:intron 40.0%
!! TGTAGTGGATAGCAAAACAG+TGG + chr4_1:39759352-39759371 Msa0547050:intron 40.0%
GTAAATTCAATCGGCATAGG+GGG - chr4_1:39759439-39759458 None:intergenic 40.0%
GGTAAATTCAATCGGCATAG+GGG - chr4_1:39759440-39759459 None:intergenic 40.0%
GGGTAAATTCAATCGGCATA+GGG - chr4_1:39759441-39759460 None:intergenic 40.0%
AGACGTGCAAGAAACTCATA+AGG + chr4_1:39759514-39759533 Msa0547050:intron 40.0%
!! GTGGAAGATTAGTCTTGTCT+TGG + chr4_1:39759581-39759600 Msa0547050:intron 40.0%
GAATAATGCTAGACTGCTAG+AGG - chr4_1:39759629-39759648 None:intergenic 40.0%
! CCTTCCTCAGTTTCTTTTGT+CGG - chr4_1:39759701-39759720 None:intergenic 40.0%
CGACAAAAGAAACTGAGGAA+GGG + chr4_1:39759699-39759718 Msa0547050:intron 40.0%
GTCCATTATATGCATGAAGG+TGG + chr4_1:39760153-39760172 Msa0547050:intron 40.0%
AGCCACCTTCATGCATATAA+TGG - chr4_1:39760158-39760177 None:intergenic 40.0%
TATATGCATGAAGGTGGCTA+TGG + chr4_1:39760159-39760178 Msa0547050:intron 40.0%
ATATGCATGAAGGTGGCTAT+GGG + chr4_1:39760160-39760179 Msa0547050:intron 40.0%
AGCTTCTTGAGGTCATAACT+TGG + chr4_1:39760193-39760212 Msa0547050:CDS 40.0%
GCTTCTTGAGGTCATAACTT+GGG + chr4_1:39760194-39760213 Msa0547050:CDS 40.0%
AAAAATGGCAAGATTGAGGG+AGG - chr4_1:39760254-39760273 None:intergenic 40.0%
GTGGGATTGTTGAATGTAGA+TGG + chr4_1:39760341-39760360 Msa0547050:CDS 40.0%
TTTCATTGACAAAGCTGTGG+AGG + chr4_1:39760385-39760404 Msa0547050:CDS 40.0%
! GACAAGCTCTTTTGTTGATG+GGG - chr4_1:39760453-39760472 None:intergenic 40.0%
! GGACAAGCTCTTTTGTTGAT+GGG - chr4_1:39760454-39760473 None:intergenic 40.0%
! TGGACAAGCTCTTTTGTTGA+TGG - chr4_1:39760455-39760474 None:intergenic 40.0%
! AAGTACGTACCTCCATCTTT+TGG - chr4_1:39760475-39760494 None:intergenic 40.0%
CATTAAAATGGACGCACGTT+TGG - chr4_1:39760558-39760577 None:intergenic 40.0%
TTCGTGCATGTTTGAATAGG+CGG - chr4_1:39760874-39760893 None:intergenic 40.0%
GATGCAACTCTTTCATGTTG+TGG - chr4_1:39760956-39760975 None:intergenic 40.0%
GAGTTGCATCTAAGCAAAGT+TGG + chr4_1:39760966-39760985 Msa0547050:CDS 40.0%
TCTAAGCAAAGTTGGGAAAC+TGG + chr4_1:39760974-39760993 Msa0547050:CDS 40.0%
CTAAGCAAAGTTGGGAAACT+GGG + chr4_1:39760975-39760994 Msa0547050:CDS 40.0%
ACTTGAGATGTCACAATGTG+AGG - chr4_1:39761014-39761033 None:intergenic 40.0%
! CATTGTGACATCTCAAGTTG+TGG + chr4_1:39761016-39761035 Msa0547050:three_prime_UTR 40.0%
! GTTTAAGAGTTTGGTACTGG+GGG + chr4_1:39761257-39761276 Msa0547050:three_prime_UTR 40.0%
! CGGATTTTGTAGGGTTTGTC+CGG - chr4_1:39754580-39754599 None:intergenic 45.0%
TGTCCACCATCCATTCTTCT+TGG + chr4_1:39754707-39754726 Msa0547050:intron 45.0%
! CATTACGAACCTTTTGGTGG+TGG + chr4_1:39754956-39754975 Msa0547050:intron 45.0%
!!! TTACGAACCTTTTGGTGGTG+GGG + chr4_1:39754958-39754977 Msa0547050:intron 45.0%
CTCTAGCGCATATTAGTCAC+CGG - chr4_1:39755541-39755560 None:intergenic 45.0%
ATGGAGGTCGACATGTGATT+GGG + chr4_1:39755903-39755922 Msa0547050:CDS 45.0%
!! TGGTGGTGATGGTGTTATGT+TGG + chr4_1:39755961-39755980 Msa0547050:intron 45.0%
CCATGTGAAATGTCACCGAA+AGG - chr4_1:39756145-39756164 None:intergenic 45.0%
CCTTTCGGTGACATTTCACA+TGG + chr4_1:39756142-39756161 Msa0547050:intron 45.0%
GGTGACATTTCACATGGGAA+AGG + chr4_1:39756148-39756167 Msa0547050:intron 45.0%
!! GAAAGAGAAGTGCTATGGTG+TGG - chr4_1:39756251-39756270 None:intergenic 45.0%
AGTGTTTGATGTTGCTGGGA+AGG + chr4_1:39756586-39756605 Msa0547050:intron 45.0%
TCATTACACCTGGCAATCTG+GGG + chr4_1:39756956-39756975 Msa0547050:intron 45.0%
GAGGGACAAAAATGCTCAGA+AGG - chr4_1:39756988-39757007 None:intergenic 45.0%
!! AGCTTTGAGAGAGAGAGAGA+GGG - chr4_1:39757006-39757025 None:intergenic 45.0%
CGATTCTTGGTCCTCATAAC+TGG + chr4_1:39757424-39757443 Msa0547050:intron 45.0%
! GATGTGAGGTACTACAAGTG+AGG - chr4_1:39757557-39757576 None:intergenic 45.0%
ATGATGAGGGCTTCAGAAGT+GGG - chr4_1:39757663-39757682 None:intergenic 45.0%
AATGATGAGGGCTTCAGAAG+TGG - chr4_1:39757664-39757683 None:intergenic 45.0%
TGTGAATGATTCGTGCTGCA+TGG - chr4_1:39757700-39757719 None:intergenic 45.0%
GTCATCTATTGAGGGACGAA+GGG + chr4_1:39758421-39758440 Msa0547050:intron 45.0%
GGCAACACTATTGTCCCATT+TGG + chr4_1:39758519-39758538 Msa0547050:intron 45.0%
TATCCTCCGAACGTAACAAG+TGG + chr4_1:39759161-39759180 Msa0547050:intron 45.0%
! TATCCACTTGTTACGTTCGG+AGG - chr4_1:39759167-39759186 None:intergenic 45.0%
! GGGGGCGCAATAAATATGAT+GGG - chr4_1:39759421-39759440 None:intergenic 45.0%
! AGGGGGCGCAATAAATATGA+TGG - chr4_1:39759422-39759441 None:intergenic 45.0%
GGGGTAAATTCAATCGGCAT+AGG - chr4_1:39759442-39759461 None:intergenic 45.0%
CCGACAAAAGAAACTGAGGA+AGG + chr4_1:39759698-39759717 Msa0547050:intron 45.0%
GTCATAACTTGGGCTCAACT+TGG + chr4_1:39760204-39760223 Msa0547050:CDS 45.0%
GATTGAGGGAGGAAACTTAC+TGG - chr4_1:39760243-39760262 None:intergenic 45.0%
ATTGACAAAGCTGTGGAGGA+AGG + chr4_1:39760389-39760408 Msa0547050:CDS 45.0%
AGAGCTTGTCCAAAAGATGG+AGG + chr4_1:39760463-39760482 Msa0547050:CDS 45.0%
TAGACCAACGCCAAACCAAA+CGG + chr4_1:39760635-39760654 Msa0547050:intron 45.0%
!! AAAATAATAATATGTAAAAT+AGG - chr4_1:39754138-39754157 None:intergenic 5.0%
!! ATATATATATATTAATTTAG+AGG + chr4_1:39755439-39755458 Msa0547050:intron 5.0%
!!! GTTTTTTTTTTTTTTTAATT+CGG + chr4_1:39757069-39757088 Msa0547050:intron 5.0%
!!! CATTTAAATAATTATTTTTT+GGG + chr4_1:39759724-39759743 Msa0547050:intron 5.0%
AGAAGAACCCCACCACCAAA+AGG - chr4_1:39754968-39754987 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr4_1:39755362-39755381 None:intergenic 50.0%
ATTTCGCTGACCACTTTCGG+TGG + chr4_1:39755562-39755581 Msa0547050:intron 50.0%
AGGAAAGATGCCACCGAAAG+TGG - chr4_1:39755575-39755594 None:intergenic 50.0%
GTTTATGGAGGAGGCAGCAT+TGG + chr4_1:39755848-39755867 Msa0547050:CDS 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG + chr4_1:39755856-39755875 Msa0547050:CDS 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG + chr4_1:39755857-39755876 Msa0547050:CDS 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG + chr4_1:39755858-39755877 Msa0547050:CDS 50.0%
!! CAGCATTGGTTTGATGGGGT+TGG + chr4_1:39755862-39755881 Msa0547050:CDS 50.0%
GATGGAGGTCGACATGTGAT+TGG + chr4_1:39755902-39755921 Msa0547050:CDS 50.0%
TCTCTTGGCATCAGTGTCCT+TGG - chr4_1:39756041-39756060 None:intergenic 50.0%
AAGGACACTGATGCCAAGAG+AGG + chr4_1:39756040-39756059 Msa0547050:CDS 50.0%
ATGATGTTGGATGGGGACTG+GGG - chr4_1:39756291-39756310 None:intergenic 50.0%
GATGATGTTGGATGGGGACT+GGG - chr4_1:39756292-39756311 None:intergenic 50.0%
! TGATGATGTTGGATGGGGAC+TGG - chr4_1:39756293-39756312 None:intergenic 50.0%
ATGTTGCTGGGAAGGAGAGA+AGG + chr4_1:39756594-39756613 Msa0547050:intron 50.0%
!! GAGCTTTGAGAGAGAGAGAG+AGG - chr4_1:39757007-39757026 None:intergenic 50.0%
! GTTCAACCACGGTCGATTCT+TGG + chr4_1:39757411-39757430 Msa0547050:intron 50.0%
! AGTGGGTTTGTGCAGATCAC+TGG + chr4_1:39757770-39757789 Msa0547050:intron 50.0%
CAGATCACTGGAGAGACAGT+GGG + chr4_1:39757782-39757801 Msa0547050:intron 50.0%
AGAGACAGTGGGAGAAGTGA+AGG + chr4_1:39757793-39757812 Msa0547050:CDS 50.0%
GAATGGGAACCAACCTGGTA+AGG - chr4_1:39757879-39757898 None:intergenic 50.0%
TTGTGGAATGGGAACCAACC+TGG - chr4_1:39757884-39757903 None:intergenic 50.0%
TACGTGTGTCGGAGTCAACT+AGG + chr4_1:39758399-39758418 Msa0547050:intron 50.0%
GGTCATCTATTGAGGGACGA+AGG + chr4_1:39758420-39758439 Msa0547050:intron 50.0%
! ATAGTGACCAGAGGGTGTAG+TGG + chr4_1:39759337-39759356 Msa0547050:intron 50.0%
TTGCTATCCACTACACCCTC+TGG - chr4_1:39759347-39759366 None:intergenic 50.0%
! GGGCATTGCGTTGCTTGTTA+GGG - chr4_1:39759608-39759627 None:intergenic 50.0%
!! AGGGCATTGCGTTGCTTGTT+AGG - chr4_1:39759609-39759628 None:intergenic 50.0%
TCGGCCGACAAAAGAAACTG+AGG + chr4_1:39759694-39759713 Msa0547050:intron 50.0%
GACACTTGAGGAGCTTCTTG+AGG + chr4_1:39760182-39760201 Msa0547050:CDS 50.0%
AGACCAACGCCAAACCAAAC+GGG + chr4_1:39760636-39760655 Msa0547050:intron 50.0%
!! TAACCCGTTTGGTTTGGCGT+TGG - chr4_1:39760642-39760661 None:intergenic 50.0%
AAGTTGGGAAACTGGGAAGC+TGG + chr4_1:39760982-39761001 Msa0547050:CDS 50.0%
! TTTGGTACTGGGGGAGAAAC+TGG + chr4_1:39761266-39761285 Msa0547050:three_prime_UTR 50.0%
TGGGAAGGAGAGAAGGTTGC+TGG + chr4_1:39756601-39756620 Msa0547050:intron 55.0%
GGGAAGGAGAGAAGGTTGCT+GGG + chr4_1:39756602-39756621 Msa0547050:intron 55.0%
AAGGAGAGAAGGTTGCTGGG+AGG + chr4_1:39756605-39756624 Msa0547050:intron 55.0%
TGAGGACCAAGAATCGACCG+TGG - chr4_1:39757420-39757439 None:intergenic 55.0%
! GCTTCAGAAGTGGGCTCAAG+TGG - chr4_1:39757654-39757673 None:intergenic 55.0%
GCAGATCACTGGAGAGACAG+TGG + chr4_1:39757781-39757800 Msa0547050:intron 55.0%
GGAGAAGTGAAGGCAGTAGC+AGG + chr4_1:39757803-39757822 Msa0547050:CDS 55.0%
CGGCGACAACCTCAAACCTT+TGG - chr4_1:39759117-39759136 None:intergenic 55.0%
AGGTGGCTATGGGACACTTG+AGG + chr4_1:39760170-39760189 Msa0547050:intron 55.0%
GAGAGAAGGTTGCTGGGAGG+AGG + chr4_1:39756608-39756627 Msa0547050:intron 60.0%
! ACACCTGGCAATCTGGGGCA+TGG + chr4_1:39756961-39756980 Msa0547050:intron 60.0%
TGGGGACTGGGGAGCAACGA+GGG - chr4_1:39756280-39756299 None:intergenic 65.0%
ATGGGGACTGGGGAGCAACG+AGG - chr4_1:39756281-39756300 None:intergenic 65.0%
GGACCATGCCCCAGATTGCC+AGG - chr4_1:39756967-39756986 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 39754068 39761433 39754068 ID=Msa0547050;Name=Msa0547050
chr4_1 mRNA 39754068 39761433 39754068 ID=Msa0547050-mRNA-1;Parent=Msa0547050;Name=Msa0547050-mRNA-1;_AED=0.30;_eAED=0.30;_QI=320|1|1|1|1|1|7|424|209
chr4_1 exon 39754068 39754507 39754068 ID=Msa0547050-mRNA-1:exon:10097;Parent=Msa0547050-mRNA-1
chr4_1 exon 39755827 39755924 39755827 ID=Msa0547050-mRNA-1:exon:10098;Parent=Msa0547050-mRNA-1
chr4_1 exon 39756031 39756061 39756031 ID=Msa0547050-mRNA-1:exon:10099;Parent=Msa0547050-mRNA-1
chr4_1 exon 39757785 39757884 39757785 ID=Msa0547050-mRNA-1:exon:10100;Parent=Msa0547050-mRNA-1
chr4_1 exon 39760172 39760242 39760172 ID=Msa0547050-mRNA-1:exon:10101;Parent=Msa0547050-mRNA-1
chr4_1 exon 39760341 39760484 39760341 ID=Msa0547050-mRNA-1:exon:10102;Parent=Msa0547050-mRNA-1
chr4_1 exon 39760944 39761433 39760944 ID=Msa0547050-mRNA-1:exon:10103;Parent=Msa0547050-mRNA-1
chr4_1 five_prime_UTR 39754068 39754387 39754068 ID=Msa0547050-mRNA-1:five_prime_utr;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39754388 39754507 39754388 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39755827 39755924 39755827 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39756031 39756061 39756031 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39757785 39757884 39757785 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39760172 39760242 39760172 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39760341 39760484 39760341 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 CDS 39760944 39761009 39760944 ID=Msa0547050-mRNA-1:cds;Parent=Msa0547050-mRNA-1
chr4_1 three_prime_UTR 39761010 39761433 39761010 ID=Msa0547050-mRNA-1:three_prime_utr;Parent=Msa0547050-mRNA-1
Gene Sequence

>Msa0547050

ATGGAGGAGGAAAGTGAGATGAAAGAATCAAAGTTTAAGAGGATTTGTGTTTTTTGTGGTAGTAGTCCTGGTAACAAGAGTAGCTATAAAGATGCTGCTATTGAGCTTGGAAATGAGTTGGTGTCAAGAAATATTGATTTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGGTTTCTCAAGCTGTTTATGATGGAGGTCGACATGTGATTGGGGTTATTCCAAGGACACTGATGCCAAGAGAGATCACTGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGGCATGCATCAAAGAAAAGCTGAGATGGCCAAGCATTCTGATGCTTTTATTGCCTTACCAGGTGGCTATGGGACACTTGAGGAGCTTCTTGAGGTCATAACTTGGGCTCAACTTGGCATCCATGATAAACCAGTGGGATTGTTGAATGTAGATGGCTACTACAATTCTTTGTTATCTTTCATTGACAAAGCTGTGGAGGAAGGCTTCATTAGCCCTAAAGCTCGTCATATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCCAAAAGATGGAGGAATACTCTCCACAACATGAAAGAGTTGCATCTAAGCAAAGTTGGGAAACTGGGAAGCTGGATTAG

Protein sequence

>Msa0547050

MEEESEMKESKFKRICVFCGSSPGNKSSYKDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPRTLMPREITGETVGEVKAVAGMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPKARHIIVSAPSTKELVQKMEEYSPQHERVASKQSWETGKLD*