AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467880 MtrunA17_Chr3g0122461 96.585 205 3 1 1 201 1 205 5.84e-148 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467880 AT1G27385.1 75.000 148 31 1 54 201 61 202 1.05e-76 229
Msa0467880 AT1G27385.3 74.324 148 32 1 54 201 61 202 7.56e-76 228
Msa0467880 AT1G27385.2 74.324 148 31 2 54 201 61 201 4.29e-74 222
Msa0467880 AT1G27385.4 74.324 148 31 2 54 201 61 201 1.96e-73 223

Find 72 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATAATTAAGTGCAAAAT+TGG 0.188824 3_3:+69342037 Msa0467880:three_prime_UTR
CATCTACGGCTCCGTGATTC+AGG 0.209396 3_3:-69342371 None:intergenic
TATAATCATAAAATAATTAT+TGG 0.243829 3_3:-69342110 None:intergenic
TTGGACTGGCCCAATGTTTA+CGG 0.293987 3_3:-69341642 None:intergenic
GCTGTGTTGAAGGCCATTTC+AGG 0.308532 3_3:+69339068 Msa0467880:CDS
CGAAAACCTCCTCTCTTATT+CGG 0.315627 3_3:-69338933 None:intergenic
ATGGGTTGCTTTAGACAAAA+AGG 0.324861 3_3:+69339275 Msa0467880:CDS
GTAAAGGTTTGAATTGGAAT+TGG 0.326338 3_3:-69338896 None:intergenic
CAAACTACGAATATGGTTAT+TGG 0.349962 3_3:+69339222 Msa0467880:CDS
TGAATACATACCCAACTGTT+AGG 0.369842 3_3:+69339464 Msa0467880:CDS
GATAGGACAAACTACGAATA+TGG 0.387015 3_3:+69339215 Msa0467880:CDS
TCCTCAAGAAGCTGTGTTGA+AGG 0.392868 3_3:+69339058 Msa0467880:CDS
TTTCTTTGGCACAACAGATT+GGG 0.397029 3_3:+69342431 Msa0467880:three_prime_UTR
TGCAATTAAGAAAATGAAAC+AGG 0.399689 3_3:-69342395 None:intergenic
CCAAGTTGTTTCCAGCGAAC+AGG 0.415316 3_3:+69341661 Msa0467880:CDS
ATAAAACATACCTGGGGAAT+GGG 0.419641 3_3:-69339565 None:intergenic
CGTCCCTTTCACCGTGGTAA+TGG 0.421777 3_3:+69338975 Msa0467880:CDS
AGGCATGTCAATATATCAAT+TGG 0.427642 3_3:-69341965 None:intergenic
GTGAAAGGGACGAGCCTTAA+CGG 0.448927 3_3:-69338964 None:intergenic
CCTGTTCGCTGGAAACAACT+TGG 0.461413 3_3:-69341661 None:intergenic
CGGATGATTCTACTAATGAA+TGG 0.463843 3_3:+69339256 Msa0467880:CDS
GAAGATGGAATTACCTGAAA+TGG 0.471281 3_3:-69339081 None:intergenic
CATAAAACATACCTGGGGAA+TGG 0.489276 3_3:-69339566 None:intergenic
GAATACATACCCAACTGTTA+GGG 0.490009 3_3:+69339465 Msa0467880:CDS
ATGCTATGAGGAGGGATGAC+AGG 0.511597 3_3:+69341893 Msa0467880:CDS
AATATGTGTCCGTAAACATT+GGG 0.511909 3_3:+69341633 Msa0467880:CDS
AAATATGTGTCCGTAAACAT+TGG 0.512566 3_3:+69341632 Msa0467880:CDS
GGATGATTCTACTAATGAAT+GGG 0.513339 3_3:+69339257 Msa0467880:CDS
AATTCCATTACCACGGTGAA+AGG 0.519265 3_3:-69338979 None:intergenic
GGGTTCACTGCAATAGGAAC+CGG 0.532077 3_3:+69339487 Msa0467880:CDS
AGGCAGAAATACCTGTTCGC+TGG 0.537747 3_3:-69341672 None:intergenic
TCGCTGGAAACAACTTGGAC+TGG 0.541126 3_3:-69341656 None:intergenic
GCCTTCAACACAGCTTCTTG+AGG 0.541456 3_3:-69339059 None:intergenic
ATACCTGGGGAATGGGCTGT+TGG 0.541945 3_3:-69339558 None:intergenic
ATGCCTGCTTTCTAGTGGTT+AGG 0.549502 3_3:+69341982 Msa0467880:three_prime_UTR
ATTCCATTACCACGGTGAAA+GGG 0.551205 3_3:-69338978 None:intergenic
TCATAGCATTATATACAGCT+TGG 0.551996 3_3:-69341879 None:intergenic
CAGCCTAACCACTAGAAAGC+AGG 0.556389 3_3:-69341985 None:intergenic
ATCTACGGCTCCGTGATTCA+GGG 0.557161 3_3:-69342370 None:intergenic
TTCACTGCAATAGGAACCGG+TGG 0.562823 3_3:+69339490 Msa0467880:CDS
GGATGACTTCGTGCAAGCTA+TGG 0.570776 3_3:+69339513 Msa0467880:CDS
TCTAAGACAGAAGGAAGGAT+AGG 0.570938 3_3:+69339198 Msa0467880:CDS
GCTTCGTTCAGCGATGATTG+TGG 0.572314 3_3:+69338860 Msa0467880:CDS
TTGACATGCCTGCTTTCTAG+TGG 0.576997 3_3:+69341977 Msa0467880:three_prime_UTR
AATTGGAATTGGAATTGCAA+TGG 0.580064 3_3:-69338885 None:intergenic
AATCCAACAGCCCATTCCCC+AGG 0.580170 3_3:+69339555 Msa0467880:CDS
ACTACGAATATGGTTATTGG+AGG 0.589546 3_3:+69339225 Msa0467880:CDS
TTCAACACAGCTTCTTGAGG+AGG 0.596405 3_3:-69339056 None:intergenic
GCAGAGGTATCTAAGACAGA+AGG 0.603237 3_3:+69339189 Msa0467880:intron
CTGTATATAATGCTATGAGG+AGG 0.611383 3_3:+69341884 Msa0467880:CDS
TGTATATAATGCTATGAGGA+GGG 0.612053 3_3:+69341885 Msa0467880:CDS
AATTTGAATCCGAATAAGAG+AGG 0.614217 3_3:+69338924 Msa0467880:CDS
AAGCTGTATATAATGCTATG+AGG 0.615037 3_3:+69341881 Msa0467880:CDS
AATTGAAAATCCCTGAATCA+CGG 0.616610 3_3:+69342360 Msa0467880:three_prime_UTR
AAAATGAAACAGGACATCTA+CGG 0.620359 3_3:-69342385 None:intergenic
TTGAATCCGAATAAGAGAGG+AGG 0.625769 3_3:+69338927 Msa0467880:CDS
GAAGCACAAGGTATCAGCAA+GGG 0.626581 3_3:+69341607 Msa0467880:CDS
TGAAGCACAAGGTATCAGCA+AGG 0.632271 3_3:+69341606 Msa0467880:CDS
AAGCACAAGGTATCAGCAAG+GGG 0.636193 3_3:+69341608 Msa0467880:CDS
AGGTATCTAAGACAGAAGGA+AGG 0.645582 3_3:+69339193 Msa0467880:CDS
ACTTAATTATAACGATATCG+TGG 0.647194 3_3:-69342027 None:intergenic
GGTTATTGGAGGAACTGTCA+CGG 0.650079 3_3:+69339236 Msa0467880:CDS
AATACATACCCAACTGTTAG+GGG 0.655407 3_3:+69339466 Msa0467880:CDS
ACAGGGGAGTGTGAAGCACA+AGG 0.655631 3_3:+69341595 Msa0467880:intron
TTGCACGAAGTCATCCCCAC+CGG 0.656764 3_3:-69339506 None:intergenic
CACTGCAATAGGAACCGGTG+GGG 0.661994 3_3:+69339492 Msa0467880:CDS
AACGGAGAATTCCATTACCA+CGG 0.679173 3_3:-69338986 None:intergenic
GTGTATCGTTACGAGAGCAA+CGG 0.696668 3_3:-69339004 None:intergenic
ATACATACCCAACTGTTAGG+GGG 0.700615 3_3:+69339467 Msa0467880:CDS
TCACTGCAATAGGAACCGGT+GGG 0.708899 3_3:+69339491 Msa0467880:CDS
AAGGCTCGTCCCTTTCACCG+TGG 0.745511 3_3:+69338969 Msa0467880:CDS
TCATCGTGAAAAGACGACGA+CGG 0.780619 3_3:-69339026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTTAATACAATTCT+TGG - chr3_3:69340183-69340202 None:intergenic 10.0%
!!! ATTATAGACATTATTATTTT+AGG + chr3_3:69342127-69342146 Msa0467880:three_prime_UTR 10.0%
!!! TTATAGACATTATTATTTTA+GGG + chr3_3:69342128-69342147 Msa0467880:three_prime_UTR 10.0%
!! ACCAAATATTATTCTTATAA+AGG + chr3_3:69339794-69339813 Msa0467880:intron 15.0%
!! ACCTTTATAAGAATAATATT+TGG - chr3_3:69339798-69339817 None:intergenic 15.0%
!! TAAAAAGTAAAGGTTTGAAT+TGG - chr3_3:69338905-69338924 None:intergenic 20.0%
!! GGATTCAAATTAAAAAGTAA+AGG - chr3_3:69338915-69338934 None:intergenic 20.0%
!! AATTAAATCAAATGTGAAGA+TGG - chr3_3:69339099-69339118 None:intergenic 20.0%
!!! TTAATAGTGTTGTTTTTGAT+TGG + chr3_3:69339157-69339176 Msa0467880:intron 20.0%
!!! TCAATACTTTTTCAGAAATT+TGG + chr3_3:69339616-69339635 Msa0467880:intron 20.0%
!!! CTAAATATTTTTGGCTTATA+AGG + chr3_3:69340143-69340162 Msa0467880:intron 20.0%
!! TTGAATTAACACTATTATGA+AGG + chr3_3:69340293-69340312 Msa0467880:intron 20.0%
!!! AGAGACTTTTTTTTTTAACA+AGG + chr3_3:69340948-69340967 Msa0467880:intron 20.0%
!! TCAAAAGTTAGTATTTAGAA+GGG + chr3_3:69341027-69341046 Msa0467880:intron 20.0%
!!! AGCCTAAAATTTTCTTATTT+GGG - chr3_3:69341115-69341134 None:intergenic 20.0%
!!! TAGCCTAAAATTTTCTTATT+TGG - chr3_3:69341116-69341135 None:intergenic 20.0%
!! TGTGATCATTAACAATAATT+TGG - chr3_3:69341385-69341404 None:intergenic 20.0%
!!! ATGAACAGTTTTCATTAATA+TGG + chr3_3:69341511-69341530 Msa0467880:intron 20.0%
!!! TAGTATGTTAGATTTTGTAT+AGG + chr3_3:69341931-69341950 Msa0467880:exon 20.0%
!! GTTATAATTAAGTGCAAAAT+TGG + chr3_3:69342037-69342056 Msa0467880:three_prime_UTR 20.0%
!!! TAAAAAGCAGTTTTCTTTTA+TGG + chr3_3:69342251-69342270 Msa0467880:intron 20.0%
!! TACATGCACTATAAAATAAA+GGG - chr3_3:69342335-69342354 None:intergenic 20.0%
!! TTACATGCACTATAAAATAA+AGG - chr3_3:69342336-69342355 None:intergenic 20.0%
!!! AAAACACAGATTTTTCGATA+AGG - chr3_3:69338774-69338793 None:intergenic 25.0%
!!! TGTTGTTTTTGATTGGTTAA+TGG + chr3_3:69339164-69339183 Msa0467880:intron 25.0%
! TTGATACATAAAACATACCT+GGG - chr3_3:69339575-69339594 None:intergenic 25.0%
! TAAGTTGCACCTATTTATTT+GGG + chr3_3:69339646-69339665 Msa0467880:intron 25.0%
!!! TATTTGTTGTTATTACCGTA+AGG + chr3_3:69339824-69339843 Msa0467880:intron 25.0%
! TAGACACAAAATTAACCTTA+CGG - chr3_3:69339842-69339861 None:intergenic 25.0%
!! CTGTATCTGCTAAATATTTT+TGG + chr3_3:69340134-69340153 Msa0467880:intron 25.0%
!!! AATATTTTTGGCTTATAAGG+TGG + chr3_3:69340146-69340165 Msa0467880:intron 25.0%
! ATGATAATATGTAAACCTGA+CGG - chr3_3:69340234-69340253 None:intergenic 25.0%
!! TTCATAAGAAACTTCTAGAA+GGG - chr3_3:69340405-69340424 None:intergenic 25.0%
! TTTCATAAGAAACTTCTAGA+AGG - chr3_3:69340406-69340425 None:intergenic 25.0%
! TTTACTGTATCCATATTCAA+GGG + chr3_3:69340444-69340463 Msa0467880:intron 25.0%
!!! TCTTTTAAAAGGTCTAACTT+GGG - chr3_3:69340641-69340660 None:intergenic 25.0%
!!! TATAATTTTCAAGGACTTCA+TGG - chr3_3:69340853-69340872 None:intergenic 25.0%
! TGAAGTCCTTGAAAATTATA+TGG + chr3_3:69340853-69340872 Msa0467880:intron 25.0%
!!! CTTTTTTTTTTAACAAGGAG+AGG + chr3_3:69340953-69340972 Msa0467880:intron 25.0%
! GTCAAAAGTTAGTATTTAGA+AGG + chr3_3:69341026-69341045 Msa0467880:intron 25.0%
!! CTCCCAAATAAGAAAATTTT+AGG + chr3_3:69341110-69341129 Msa0467880:intron 25.0%
! TAAAATTCATAACTTAGTCC+TGG + chr3_3:69341274-69341293 Msa0467880:intron 25.0%
! AATGTTAACATATTGCTTAC+AGG + chr3_3:69341577-69341596 Msa0467880:intron 25.0%
! ATGTTAACATATTGCTTACA+GGG + chr3_3:69341578-69341597 Msa0467880:intron 25.0%
! GGAAAAGAAAAAAACAAACA+AGG - chr3_3:69341695-69341714 None:intergenic 25.0%
! AAAAACAGAAAACATAGAAG+AGG - chr3_3:69341732-69341751 None:intergenic 25.0%
!!! TTTTCTGTTTTTTCTGATCA+TGG + chr3_3:69341740-69341759 Msa0467880:intron 25.0%
! TACAACAAGATTCAATATCA+AGG - chr3_3:69341849-69341868 None:intergenic 25.0%
!!! TGAATCTTGTTGTATTTTTC+AGG + chr3_3:69341855-69341874 Msa0467880:intron 25.0%
! ACTTAATTATAACGATATCG+TGG - chr3_3:69342030-69342049 None:intergenic 25.0%
!! ATGGTAATAATTCCCTTTTA+TGG + chr3_3:69342270-69342289 Msa0467880:intron 25.0%
! TGCAATTAAGAAAATGAAAC+AGG - chr3_3:69342398-69342417 None:intergenic 25.0%
!! TCATTTTCTTAATTGCAGAT+TGG + chr3_3:69342401-69342420 Msa0467880:three_prime_UTR 25.0%
!!! AGATTGGTTTGTTTTTTCTT+TGG + chr3_3:69342417-69342436 Msa0467880:three_prime_UTR 25.0%
AGAGAGACAGAAAAAAACAA+TGG + chr3_3:69338824-69338843 Msa0467880:exon 30.0%
AATTGGAATTGGAATTGCAA+TGG - chr3_3:69338888-69338907 None:intergenic 30.0%
GTAAAGGTTTGAATTGGAAT+TGG - chr3_3:69338899-69338918 None:intergenic 30.0%
AATTTGAATCCGAATAAGAG+AGG + chr3_3:69338924-69338943 Msa0467880:CDS 30.0%
CAAACTACGAATATGGTTAT+TGG + chr3_3:69339222-69339241 Msa0467880:CDS 30.0%
GGATGATTCTACTAATGAAT+GGG + chr3_3:69339257-69339276 Msa0467880:CDS 30.0%
TGATACATAAAACATACCTG+GGG - chr3_3:69339574-69339593 None:intergenic 30.0%
GTTGATACATAAAACATACC+TGG - chr3_3:69339576-69339595 None:intergenic 30.0%
!! TTTTTCAGAAATTTGGCCAT+TGG + chr3_3:69339623-69339642 Msa0467880:intron 30.0%
GTAAGTTGCACCTATTTATT+TGG + chr3_3:69339645-69339664 Msa0467880:intron 30.0%
AAGTTGCACCTATTTATTTG+GGG + chr3_3:69339647-69339666 Msa0467880:intron 30.0%
AGGTTTACATATTATCATCG+AGG + chr3_3:69340236-69340255 Msa0467880:intron 30.0%
! CACAATAGAAGACTTTTAAG+CGG + chr3_3:69340336-69340355 Msa0467880:intron 30.0%
AAACCATTTACAGCTCATAT+TGG - chr3_3:69340375-69340394 None:intergenic 30.0%
GTTTACTGTATCCATATTCA+AGG + chr3_3:69340443-69340462 Msa0467880:intron 30.0%
TGTCCTTATAAAAAGACTAG+AGG + chr3_3:69340497-69340516 Msa0467880:intron 30.0%
!! CTTTTAAAAGGTCTAACTTG+GGG - chr3_3:69340640-69340659 None:intergenic 30.0%
!! GTCTTTTAAAAGGTCTAACT+TGG - chr3_3:69340642-69340661 None:intergenic 30.0%
! GAGAAGCCATATAATTTTCA+AGG - chr3_3:69340862-69340881 None:intergenic 30.0%
!! TACTAACTTTTGACTGTTGT+TGG - chr3_3:69341020-69341039 None:intergenic 30.0%
!!! AATTTTAGGCTAGCCTTTAA+TGG + chr3_3:69341124-69341143 Msa0467880:intron 30.0%
GGAAACTGAAATACCATTAA+AGG - chr3_3:69341140-69341159 None:intergenic 30.0%
TCTACATATCCTTATTGTGT+GGG - chr3_3:69341338-69341357 None:intergenic 30.0%
ACAATAAGGATATGTAGAGT+TGG + chr3_3:69341340-69341359 Msa0467880:intron 30.0%
TGTTAACATATTGCTTACAG+GGG + chr3_3:69341579-69341598 Msa0467880:intron 30.0%
AAATATGTGTCCGTAAACAT+TGG + chr3_3:69341632-69341651 Msa0467880:CDS 30.0%
AATATGTGTCCGTAAACATT+GGG + chr3_3:69341633-69341652 Msa0467880:CDS 30.0%
TCATAGCATTATATACAGCT+TGG - chr3_3:69341882-69341901 None:intergenic 30.0%
AAGCTGTATATAATGCTATG+AGG + chr3_3:69341881-69341900 Msa0467880:CDS 30.0%
TGTATATAATGCTATGAGGA+GGG + chr3_3:69341885-69341904 Msa0467880:CDS 30.0%
AGGCATGTCAATATATCAAT+TGG - chr3_3:69341968-69341987 None:intergenic 30.0%
!! TATTTTAGGGAAATGCTAAC+CGG + chr3_3:69342141-69342160 Msa0467880:intron 30.0%
ACTGGTTAAGGATATGAAAA+AGG + chr3_3:69342176-69342195 Msa0467880:intron 30.0%
TGGTTAAGCATACCATAAAA+GGG - chr3_3:69342285-69342304 None:intergenic 30.0%
AATTGAAAATCCCTGAATCA+CGG + chr3_3:69342360-69342379 Msa0467880:three_prime_UTR 30.0%
AAAATGAAACAGGACATCTA+CGG - chr3_3:69342388-69342407 None:intergenic 30.0%
GAAGATGGAATTACCTGAAA+TGG - chr3_3:69339084-69339103 None:intergenic 35.0%
GATAGGACAAACTACGAATA+TGG + chr3_3:69339215-69339234 Msa0467880:CDS 35.0%
ACTACGAATATGGTTATTGG+AGG + chr3_3:69339225-69339244 Msa0467880:CDS 35.0%
CGGATGATTCTACTAATGAA+TGG + chr3_3:69339256-69339275 Msa0467880:CDS 35.0%
! ATGGGTTGCTTTAGACAAAA+AGG + chr3_3:69339275-69339294 Msa0467880:CDS 35.0%
TACTCTGTTGTGTGTTACAT+AGG + chr3_3:69339441-69339460 Msa0467880:intron 35.0%
TGAATACATACCCAACTGTT+AGG + chr3_3:69339464-69339483 Msa0467880:CDS 35.0%
GAATACATACCCAACTGTTA+GGG + chr3_3:69339465-69339484 Msa0467880:CDS 35.0%
AATACATACCCAACTGTTAG+GGG + chr3_3:69339466-69339485 Msa0467880:CDS 35.0%
ATAAAACATACCTGGGGAAT+GGG - chr3_3:69339568-69339587 None:intergenic 35.0%
AAATAGGTGCAACTTACCAA+TGG - chr3_3:69339642-69339661 None:intergenic 35.0%
AGTTGCACCTATTTATTTGG+GGG + chr3_3:69339648-69339667 Msa0467880:intron 35.0%
ATCTTACATGCTGTGTAACT+TGG + chr3_3:69339873-69339892 Msa0467880:intron 35.0%
ATTGACGTGATGTTTATTGC+TGG + chr3_3:69339908-69339927 Msa0467880:intron 35.0%
ATAATATGTAAACCTGACGG+TGG - chr3_3:69340231-69340250 None:intergenic 35.0%
TTGCCAATATGAGCTGTAAA+TGG + chr3_3:69340369-69340388 Msa0467880:intron 35.0%
!! GAAACTTCTAGAAGGGATTT+TGG - chr3_3:69340398-69340417 None:intergenic 35.0%
!! CCTCCTCTAGTCTTTTTATA+AGG - chr3_3:69340503-69340522 None:intergenic 35.0%
CCTTATAAAAAGACTAGAGG+AGG + chr3_3:69340500-69340519 Msa0467880:intron 35.0%
TATAAAAAGACTAGAGGAGG+AGG + chr3_3:69340503-69340522 Msa0467880:intron 35.0%
!! AGACCTTTTAAAAGACGAGA+CGG + chr3_3:69340646-69340665 Msa0467880:intron 35.0%
TTCAAGGACTTCATGGAATT+TGG - chr3_3:69340846-69340865 None:intergenic 35.0%
ACGTATCGTAACAGTTGTTA+AGG + chr3_3:69341240-69341259 Msa0467880:intron 35.0%
TATCGTAACAGTTGTTAAGG+CGG + chr3_3:69341243-69341262 Msa0467880:intron 35.0%
AATTCATAACTTAGTCCTGG+TGG + chr3_3:69341277-69341296 Msa0467880:intron 35.0%
ATTCATAACTTAGTCCTGGT+GGG + chr3_3:69341278-69341297 Msa0467880:intron 35.0%
! AAATTTTATCATCACCCACC+AGG - chr3_3:69341295-69341314 None:intergenic 35.0%
! ATTGTGTGGGTGTTCTTTTA+CGG - chr3_3:69341325-69341344 None:intergenic 35.0%
AAAAGAACACCCACACAATA+AGG + chr3_3:69341326-69341345 Msa0467880:intron 35.0%
CTCTACATATCCTTATTGTG+TGG - chr3_3:69341339-69341358 None:intergenic 35.0%
!! GATTTCCTTCGAGTTGTTAT+AGG + chr3_3:69341470-69341489 Msa0467880:intron 35.0%
! CTTTTCCTATAACAACTCGA+AGG - chr3_3:69341478-69341497 None:intergenic 35.0%
GGTACATCTACACTTACATT+TGG + chr3_3:69341532-69341551 Msa0467880:intron 35.0%
ACATCTACACTTACATTTGG+TGG + chr3_3:69341535-69341554 Msa0467880:intron 35.0%
CTGTATATAATGCTATGAGG+AGG + chr3_3:69341884-69341903 Msa0467880:CDS 35.0%
CTGGTTAAGCATACCATAAA+AGG - chr3_3:69342286-69342305 None:intergenic 35.0%
! TTTTCTTTGGCACAACAGAT+TGG + chr3_3:69342430-69342449 Msa0467880:three_prime_UTR 35.0%
TTTCTTTGGCACAACAGATT+GGG + chr3_3:69342431-69342450 Msa0467880:three_prime_UTR 35.0%
AGAAAAAAACAATGGCGTGC+AGG + chr3_3:69338832-69338851 Msa0467880:exon 40.0%
TTGAATCCGAATAAGAGAGG+AGG + chr3_3:69338927-69338946 Msa0467880:CDS 40.0%
CGAAAACCTCCTCTCTTATT+CGG - chr3_3:69338936-69338955 None:intergenic 40.0%
ATTCCATTACCACGGTGAAA+GGG - chr3_3:69338981-69339000 None:intergenic 40.0%
AATTCCATTACCACGGTGAA+AGG - chr3_3:69338982-69339001 None:intergenic 40.0%
AACGGAGAATTCCATTACCA+CGG - chr3_3:69338989-69339008 None:intergenic 40.0%
! TCGTCTTTTCACGATGATCA+AGG + chr3_3:69339032-69339051 Msa0467880:CDS 40.0%
! TGATTGGTTAATGGTTGCAG+AGG + chr3_3:69339173-69339192 Msa0467880:intron 40.0%
! AGGTATCTAAGACAGAAGGA+AGG + chr3_3:69339193-69339212 Msa0467880:CDS 40.0%
! TCTAAGACAGAAGGAAGGAT+AGG + chr3_3:69339198-69339217 Msa0467880:CDS 40.0%
ATACATACCCAACTGTTAGG+GGG + chr3_3:69339467-69339486 Msa0467880:CDS 40.0%
CATAAAACATACCTGGGGAA+TGG - chr3_3:69339569-69339588 None:intergenic 40.0%
! TGACTTTAGAAGTCCAGTGT+AGG + chr3_3:69340052-69340071 Msa0467880:intron 40.0%
ATGCAATCTTAGAACCACCA+CGG - chr3_3:69340106-69340125 None:intergenic 40.0%
! GCTTGACATAGTTTGTGGTT+TGG - chr3_3:69340209-69340228 None:intergenic 40.0%
TTATGAAGGACGCTGATCAT+AGG + chr3_3:69340307-69340326 Msa0467880:intron 40.0%
TTTGCTGCATCCCTTGAATA+TGG - chr3_3:69340457-69340476 None:intergenic 40.0%
! AGGTAGGAGTACATTATGGA+AGG - chr3_3:69340552-69340571 None:intergenic 40.0%
! GTGTAGGTAGGAGTACATTA+TGG - chr3_3:69340556-69340575 None:intergenic 40.0%
AAAAGGTCTAACTTGGGGAT+GGG - chr3_3:69340635-69340654 None:intergenic 40.0%
TAAAAGGTCTAACTTGGGGA+TGG - chr3_3:69340636-69340655 None:intergenic 40.0%
! TCACCGTCTCGTCTTTTAAA+AGG - chr3_3:69340652-69340671 None:intergenic 40.0%
AAGTGGAGAAGCAAAACATG+AGG - chr3_3:69340754-69340773 None:intergenic 40.0%
TTCTCCACTTGCTCTGTATA+TGG + chr3_3:69340764-69340783 Msa0467880:intron 40.0%
AAGGACTTCATGGAATTTGG+AGG - chr3_3:69340843-69340862 None:intergenic 40.0%
CGGTGCAAAATTCCAAACAT+GGG - chr3_3:69341174-69341193 None:intergenic 40.0%
TCGGTGCAAAATTCCAAACA+TGG - chr3_3:69341175-69341194 None:intergenic 40.0%
!! GTTTGGAATTTTGCACCGAA+TGG + chr3_3:69341176-69341195 Msa0467880:intron 40.0%
! GGTAAAAAGCACATTCCTGT+TGG - chr3_3:69341202-69341221 None:intergenic 40.0%
ATATCAAGGTATATTCGCCC+AGG - chr3_3:69341835-69341854 None:intergenic 40.0%
AAATAAAGGGTCCTGCTAAC+CGG - chr3_3:69342322-69342341 None:intergenic 40.0%
! TTTTCGCTGCAGAACCGTTA+AGG + chr3_3:69338950-69338969 Msa0467880:CDS 45.0%
GTGTATCGTTACGAGAGCAA+CGG - chr3_3:69339007-69339026 None:intergenic 45.0%
TCATCGTGAAAAGACGACGA+CGG - chr3_3:69339029-69339048 None:intergenic 45.0%
TTCAACACAGCTTCTTGAGG+AGG - chr3_3:69339059-69339078 None:intergenic 45.0%
TCCTCAAGAAGCTGTGTTGA+AGG + chr3_3:69339058-69339077 Msa0467880:CDS 45.0%
!! GCAGAGGTATCTAAGACAGA+AGG + chr3_3:69339189-69339208 Msa0467880:intron 45.0%
GGTTATTGGAGGAACTGTCA+CGG + chr3_3:69339236-69339255 Msa0467880:CDS 45.0%
TGCACCTATTTATTTGGGGG+CGG + chr3_3:69339651-69339670 Msa0467880:intron 45.0%
GATCAAATTGCAGCCTACAC+TGG - chr3_3:69340068-69340087 None:intergenic 45.0%
! GACTTTTAAGCGGCTACTCA+TGG + chr3_3:69340346-69340365 Msa0467880:intron 45.0%
AAAGACTAGAGGAGGAGGTT+TGG + chr3_3:69340508-69340527 Msa0467880:intron 45.0%
TATGGAAGGATCAGTCACCA+GGG - chr3_3:69340538-69340557 None:intergenic 45.0%
TTATGGAAGGATCAGTCACC+AGG - chr3_3:69340539-69340558 None:intergenic 45.0%
GGAGAAGGCTAAAGACTGTT+GGG - chr3_3:69340614-69340633 None:intergenic 45.0%
GGTTCCATATACAGAGCAAG+TGG - chr3_3:69340771-69340790 None:intergenic 45.0%
ATGCTCGTACACACATTGAG+AGG + chr3_3:69340922-69340941 Msa0467880:intron 45.0%
CAAACATGGGACTCAGTGAA+AGG - chr3_3:69341161-69341180 None:intergenic 45.0%
CTTTCACTGAGTCCCATGTT+TGG + chr3_3:69341159-69341178 Msa0467880:intron 45.0%
TCGAAGGAAATCACAGTGCA+TGG - chr3_3:69341462-69341481 None:intergenic 45.0%
! TGAAGCACAAGGTATCAGCA+AGG + chr3_3:69341606-69341625 Msa0467880:CDS 45.0%
! GAAGCACAAGGTATCAGCAA+GGG + chr3_3:69341607-69341626 Msa0467880:CDS 45.0%
! AAGCACAAGGTATCAGCAAG+GGG + chr3_3:69341608-69341627 Msa0467880:CDS 45.0%
!! TTGGACTGGCCCAATGTTTA+CGG - chr3_3:69341645-69341664 None:intergenic 45.0%
GAAGAGGATCACTTAGAGAG+AGG - chr3_3:69341716-69341735 None:intergenic 45.0%
TGTCTCCATGCAAATGATCC+TGG + chr3_3:69341814-69341833 Msa0467880:intron 45.0%
GTCTCCATGCAAATGATCCT+GGG + chr3_3:69341815-69341834 Msa0467880:intron 45.0%
TTGACATGCCTGCTTTCTAG+TGG + chr3_3:69341977-69341996 Msa0467880:three_prime_UTR 45.0%
! ATGCCTGCTTTCTAGTGGTT+AGG + chr3_3:69341982-69342001 Msa0467880:three_prime_UTR 45.0%
!! TATAATCATAAAATAATTAT+TGG - chr3_3:69342113-69342132 None:intergenic 5.0%
GCTTCGTTCAGCGATGATTG+TGG + chr3_3:69338860-69338879 Msa0467880:CDS 50.0%
GTGAAAGGGACGAGCCTTAA+CGG - chr3_3:69338967-69338986 None:intergenic 50.0%
GCCTTCAACACAGCTTCTTG+AGG - chr3_3:69339062-69339081 None:intergenic 50.0%
GCTGTGTTGAAGGCCATTTC+AGG + chr3_3:69339068-69339087 Msa0467880:CDS 50.0%
CAGTGAACCCCCTAACAGTT+GGG - chr3_3:69339477-69339496 None:intergenic 50.0%
GTTAGGGGGTTCACTGCAAT+AGG + chr3_3:69339481-69339500 Msa0467880:CDS 50.0%
GGGTTCACTGCAATAGGAAC+CGG + chr3_3:69339487-69339506 Msa0467880:CDS 50.0%
TTCACTGCAATAGGAACCGG+TGG + chr3_3:69339490-69339509 Msa0467880:CDS 50.0%
TCACTGCAATAGGAACCGGT+GGG + chr3_3:69339491-69339510 Msa0467880:CDS 50.0%
GGATGACTTCGTGCAAGCTA+TGG + chr3_3:69339513-69339532 Msa0467880:CDS 50.0%
GCACCTATTTATTTGGGGGC+GGG + chr3_3:69339652-69339671 Msa0467880:intron 50.0%
CACCTATTTATTTGGGGGCG+GGG + chr3_3:69339653-69339672 Msa0467880:intron 50.0%
CGGTGGCTTGACATAGTTTG+TGG - chr3_3:69340214-69340233 None:intergenic 50.0%
AACTATGTCAAGCCACCGTC+AGG + chr3_3:69340216-69340235 Msa0467880:intron 50.0%
AAGGGATGCAGCAAAGTCTG+TGG + chr3_3:69340462-69340481 Msa0467880:intron 50.0%
AAGACTGTTGGGAGAGTCCA+GGG - chr3_3:69340603-69340622 None:intergenic 50.0%
AAAGACTGTTGGGAGAGTCC+AGG - chr3_3:69340604-69340623 None:intergenic 50.0%
GGGAGAAGGCTAAAGACTGT+TGG - chr3_3:69340615-69340634 None:intergenic 50.0%
TCTAACTTGGGGATGGGAGA+AGG - chr3_3:69340629-69340648 None:intergenic 50.0%
ACAGAACACTCCTGAGTCGT+CGG + chr3_3:69340689-69340708 Msa0467880:intron 50.0%
ATGGAATCTTCCGACGACTC+AGG - chr3_3:69340702-69340721 None:intergenic 50.0%
AGATTCCATGTCCCTCTAGC+CGG + chr3_3:69340713-69340732 Msa0467880:intron 50.0%
GAGGTTAGAATCAGCTCCAC+CGG - chr3_3:69340735-69340754 None:intergenic 50.0%
!! TGACATCAGGTTGGATGCAC+TGG - chr3_3:69340810-69340829 None:intergenic 50.0%
AGTGCATCCAACCTGATGTC+AGG + chr3_3:69340809-69340828 Msa0467880:intron 50.0%
! CATGGAATTTGGAGGCACAC+TGG - chr3_3:69340835-69340854 None:intergenic 50.0%
TGTGTACGAGCATGCGTAAG+CGG - chr3_3:69340915-69340934 None:intergenic 50.0%
! TTTTGCACCGAATGGCCAAC+AGG + chr3_3:69341184-69341203 Msa0467880:intron 50.0%
GCACATTCCTGTTGGCCATT+CGG - chr3_3:69341194-69341213 None:intergenic 50.0%
CGTACTCTTCTGCACAAAGC+AGG - chr3_3:69341223-69341242 None:intergenic 50.0%
TCGCTGGAAACAACTTGGAC+TGG - chr3_3:69341659-69341678 None:intergenic 50.0%
CCTGTTCGCTGGAAACAACT+TGG - chr3_3:69341664-69341683 None:intergenic 50.0%
! CCAAGTTGTTTCCAGCGAAC+AGG + chr3_3:69341661-69341680 Msa0467880:CDS 50.0%
AGGCAGAAATACCTGTTCGC+TGG - chr3_3:69341675-69341694 None:intergenic 50.0%
TTCGCCCAGGATCATTTGCA+TGG - chr3_3:69341822-69341841 None:intergenic 50.0%
ATGCTATGAGGAGGGATGAC+AGG + chr3_3:69341893-69341912 Msa0467880:CDS 50.0%
CAGCCTAACCACTAGAAAGC+AGG - chr3_3:69341988-69342007 None:intergenic 50.0%
ATATCCTTAACCAGTGCCCC+GGG - chr3_3:69342171-69342190 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG - chr3_3:69342172-69342191 None:intergenic 50.0%
ATCTACGGCTCCGTGATTCA+GGG - chr3_3:69342373-69342392 None:intergenic 50.0%
CGTCCCTTTCACCGTGGTAA+TGG + chr3_3:69338975-69338994 Msa0467880:CDS 55.0%
GCAGTGAACCCCCTAACAGT+TGG - chr3_3:69339478-69339497 None:intergenic 55.0%
CACTGCAATAGGAACCGGTG+GGG + chr3_3:69339492-69339511 Msa0467880:CDS 55.0%
TTGCACGAAGTCATCCCCAC+CGG - chr3_3:69339509-69339528 None:intergenic 55.0%
AATCCAACAGCCCATTCCCC+AGG + chr3_3:69339555-69339574 Msa0467880:CDS 55.0%
!! ATACCTGGGGAATGGGCTGT+TGG - chr3_3:69339561-69339580 None:intergenic 55.0%
GTCCCCGCCCCCAAATAAAT+AGG - chr3_3:69339658-69339677 None:intergenic 55.0%
TCTGCGTAGTTTAGCTGCCG+TGG + chr3_3:69340086-69340105 Msa0467880:intron 55.0%
CTTTGGTTGCTGGTGCGTGT+AGG - chr3_3:69340572-69340591 None:intergenic 55.0%
CACGCACCAGCAACCAAAGT+CGG + chr3_3:69340573-69340592 Msa0467880:intron 55.0%
! AATCAGCTCCACCGGCTAGA+GGG - chr3_3:69340727-69340746 None:intergenic 55.0%
TGGAACCTTCGTAGAGAGCC+TGG + chr3_3:69340784-69340803 Msa0467880:intron 55.0%
! ACACTGGCCTGACATCAGGT+TGG - chr3_3:69340819-69340838 None:intergenic 55.0%
ATGCGTAAGCGGGCATGTAC+AGG - chr3_3:69340904-69340923 None:intergenic 55.0%
GTGTACGAGCATGCGTAAGC+GGG - chr3_3:69340914-69340933 None:intergenic 55.0%
! ACAGGGGAGTGTGAAGCACA+AGG + chr3_3:69341595-69341614 Msa0467880:intron 55.0%
TATCCTTAACCAGTGCCCCG+GGG - chr3_3:69342170-69342189 None:intergenic 55.0%
GGTATGCTTAACCAGTGCCC+CGG + chr3_3:69342291-69342310 Msa0467880:intron 55.0%
GTATGCTTAACCAGTGCCCC+GGG + chr3_3:69342292-69342311 Msa0467880:intron 55.0%
TATGCTTAACCAGTGCCCCG+GGG + chr3_3:69342293-69342312 Msa0467880:intron 55.0%
CATCTACGGCTCCGTGATTC+AGG - chr3_3:69342374-69342393 None:intergenic 55.0%
AAGGCTCGTCCCTTTCACCG+TGG + chr3_3:69338969-69338988 Msa0467880:CDS 60.0%
TTTATTTGGGGGCGGGGACG+CGG + chr3_3:69339659-69339678 Msa0467880:intron 60.0%
GCGTAGTTTAGCTGCCGTGG+TGG + chr3_3:69340089-69340108 Msa0467880:intron 60.0%
!! GGAGGAGGTTTGGTTTGCCC+TGG + chr3_3:69340518-69340537 Msa0467880:intron 60.0%
GGTTGCTGGTGCGTGTAGGT+AGG - chr3_3:69340568-69340587 None:intergenic 60.0%
ACTGTTGGGAGAGTCCAGGG+CGG - chr3_3:69340600-69340619 None:intergenic 60.0%
TTCCATGTCCCTCTAGCCGG+TGG + chr3_3:69340716-69340735 Msa0467880:intron 60.0%
! GAATCAGCTCCACCGGCTAG+AGG - chr3_3:69340728-69340747 None:intergenic 60.0%
ACTGGCCAGGCTCTCTACGA+AGG - chr3_3:69340792-69340811 None:intergenic 60.0%
!! TCAGGTTGGATGCACTGGCC+AGG - chr3_3:69340805-69340824 None:intergenic 60.0%
! AGGCACACTGGCCTGACATC+AGG - chr3_3:69340823-69340842 None:intergenic 60.0%
GAAATGCTAACCGGTGCCCC+CGG + chr3_3:69342150-69342169 Msa0467880:intron 60.0%
AAATGCTAACCGGTGCCCCC+GGG + chr3_3:69342151-69342170 Msa0467880:intron 60.0%
ATCCTTAACCAGTGCCCCGG+GGG - chr3_3:69342169-69342188 None:intergenic 60.0%
ATGCTTAACCAGTGCCCCGG+GGG + chr3_3:69342294-69342313 Msa0467880:intron 60.0%
TTATTTGGGGGCGGGGACGC+GGG + chr3_3:69339660-69339679 Msa0467880:intron 65.0%
GGCGGTCCGACTTTGGTTGC+TGG - chr3_3:69340582-69340601 None:intergenic 65.0%
CAACCAAAGTCGGACCGCCC+TGG + chr3_3:69340583-69340602 Msa0467880:intron 65.0%
AGTCCAGGGCGGTCCGACTT+TGG - chr3_3:69340589-69340608 None:intergenic 65.0%
! CTCCACCGGCTAGAGGGACA+TGG - chr3_3:69340721-69340740 None:intergenic 65.0%
AATGCTAACCGGTGCCCCCG+GGG + chr3_3:69342152-69342171 Msa0467880:intron 65.0%
TATTTGGGGGCGGGGACGCG+GGG + chr3_3:69339661-69339680 Msa0467880:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr3_3:69342164-69342183 Msa0467880:intron 70.0%
TCCTGCTAACCGGTGCCCCC+GGG - chr3_3:69342312-69342331 None:intergenic 70.0%
GTCCTGCTAACCGGTGCCCC+CGG - chr3_3:69342313-69342332 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG - chr3_3:69342300-69342319 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr3_3:69342300-69342319 Msa0467880:intron 75.0%
CCTGCTAACCGGTGCCCCCG+GGG - chr3_3:69342311-69342330 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG + chr3_3:69342158-69342177 Msa0467880:intron 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr3_3:69342158-69342177 None:intergenic 80.0%
!!! CCCCGGGGGCACCGGTTAGC+AGG + chr3_3:69342308-69342327 Msa0467880:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69338754 69342458 69338754 ID=Msa0467880;Name=Msa0467880
chr3_3 mRNA 69338754 69342458 69338754 ID=Msa0467880-mRNA-1;Parent=Msa0467880;Name=Msa0467880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=89|1|1|1|0.8|0.66|6|329|201
chr3_3 exon 69338754 69339089 69338754 ID=Msa0467880-mRNA-1:exon:16397;Parent=Msa0467880-mRNA-1
chr3_3 exon 69339193 69339296 69339193 ID=Msa0467880-mRNA-1:exon:16398;Parent=Msa0467880-mRNA-1
chr3_3 exon 69339463 69339576 69339463 ID=Msa0467880-mRNA-1:exon:16399;Parent=Msa0467880-mRNA-1
chr3_3 exon 69341599 69341682 69341599 ID=Msa0467880-mRNA-1:exon:16400;Parent=Msa0467880-mRNA-1
chr3_3 exon 69341877 69342148 69341877 ID=Msa0467880-mRNA-1:exon:16401;Parent=Msa0467880-mRNA-1
chr3_3 exon 69342345 69342458 69342345 ID=Msa0467880-mRNA-1:exon:16402;Parent=Msa0467880-mRNA-1
chr3_3 five_prime_UTR 69338754 69338842 69338754 ID=Msa0467880-mRNA-1:five_prime_utr;Parent=Msa0467880-mRNA-1
chr3_3 CDS 69338843 69339089 69338843 ID=Msa0467880-mRNA-1:cds;Parent=Msa0467880-mRNA-1
chr3_3 CDS 69339193 69339296 69339193 ID=Msa0467880-mRNA-1:cds;Parent=Msa0467880-mRNA-1
chr3_3 CDS 69339463 69339576 69339463 ID=Msa0467880-mRNA-1:cds;Parent=Msa0467880-mRNA-1
chr3_3 CDS 69341599 69341682 69341599 ID=Msa0467880-mRNA-1:cds;Parent=Msa0467880-mRNA-1
chr3_3 CDS 69341877 69341933 69341877 ID=Msa0467880-mRNA-1:cds;Parent=Msa0467880-mRNA-1
chr3_3 three_prime_UTR 69341934 69342148 69341934 ID=Msa0467880-mRNA-1:three_prime_utr;Parent=Msa0467880-mRNA-1
chr3_3 three_prime_UTR 69342345 69342458 69342345 ID=Msa0467880-mRNA-1:three_prime_utr;Parent=Msa0467880-mRNA-1
Gene Sequence

>Msa0467880

ATGGCGTGCAGGAGCATGCTTCGTTCAGCGATGATTGTGGAACCATTGCAATTCCAATTCCAATTCAAACCTTTACTTTTTAATTTGAATCCGAATAAGAGAGGAGGTTTTCGCTGCAGAACCGTTAAGGCTCGTCCCTTTCACCGTGGTAATGGAATTCTCCGTTGCTCTCGTAACGATACACCGTCGTCGTCTTTTCACGATGATCAAGGTCCTCCTCAAGAAGCTGTGTTGAAGGCCATTTCAGAGGTATCTAAGACAGAAGGAAGGATAGGACAAACTACGAATATGGTTATTGGAGGAACTGTCACGGATGATTCTACTAATGAATGGGTTGCTTTAGACAAAAAGGTGAATACATACCCAACTGTTAGGGGGTTCACTGCAATAGGAACCGGTGGGGATGACTTCGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTAATCCAACAGCCCATTCCCCAGGGGAGTGTGAAGCACAAGGTATCAGCAAGGGGCAAATATGTGTCCGTAAACATTGGGCCAGTCCAAGTTGTTTCCAGCGAACAGGTCCAAGCTGTATATAATGCTATGAGGAGGGATGACAGGATGAAATACTTTTTATAG

Protein sequence

>Msa0467880

MACRSMLRSAMIVEPLQFQFQFKPLLFNLNPNKRGGFRCRTVKARPFHRGNGILRCSRNDTPSSSFHDDQGPPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEWVALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSVNIGPVQVVSSEQVQAVYNAMRRDDRMKYFL*