AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560180 MtrunA17_Chr4g0050151 97.904 334 7 0 4 337 202 535 0.0 676
Msa0560180 MtrunA17_Chr2g0279401 84.132 334 52 1 3 336 208 540 0.0 597
Msa0560180 MtrunA17_Chr2g0327771 72.115 312 86 1 4 314 193 504 7.68e-168 477
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560180 AT5G64300.1 87.619 315 39 0 3 317 215 529 0.0 588
Msa0560180 AT5G59750.1 71.474 312 88 1 3 313 188 499 4.38e-168 478
Msa0560180 AT5G59750.2 71.474 312 88 1 3 313 222 533 9.91e-168 478
Msa0560180 AT2G22450.1 71.724 290 74 2 3 292 193 474 8.20e-151 433
Msa0560180 AT5G59750.3 71.654 254 71 1 3 255 188 441 2.24e-132 385

Find 185 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTTGGGGAATAGGATTT+AGG 0.160264 4_1:+59429135 None:intergenic
GGAAACCAAACGTGTGAAAA+TGG 0.179642 4_1:-59424092 Msa0560180:CDS
ACCTGTGGTGGTACCATATT+TGG 0.201373 4_1:+59427280 None:intergenic
TATCTATTGCTGACTTAATA+AGG 0.228563 4_1:-59426983 Msa0560180:intron
GGTTATGGTTTGTCCATTTC+AGG 0.231937 4_1:-59424163 Msa0560180:CDS
AGAGAAGAAGCCATTTAGTT+TGG 0.270647 4_1:+59429120 None:intergenic
ACATAATTTGTGTATCTTAC+AGG 0.271505 4_1:+59423972 None:intergenic
TTATTTATTTATTGAGAGTT+TGG 0.288189 4_1:+59429175 None:intergenic
GTTGATCTTGCAGTACTTGC+TGG 0.298152 4_1:-59427110 Msa0560180:CDS
AGTTTGGGGAATAGGATTTA+GGG 0.303586 4_1:+59429136 None:intergenic
ATCCTATTCCCCAAACTAAA+TGG 0.305424 4_1:-59429130 Msa0560180:five_prime_UTR
GAGAAGAAGCCATTTAGTTT+GGG 0.305528 4_1:+59429121 None:intergenic
GTACCTTGTATAAGTGATTA+AGG 0.322113 4_1:-59423618 Msa0560180:three_prime_UTR
TGTCTCACAGGAGACATATT+TGG 0.327946 4_1:-59424677 Msa0560180:CDS
GAGATTAGAGCTTCCTTTGA+TGG 0.335212 4_1:-59427759 Msa0560180:five_prime_UTR
AGCCATTTAGTTTGGGGAAT+AGG 0.335852 4_1:+59429128 None:intergenic
CATTCACAGCTAACTGTTAT+AGG 0.336467 4_1:-59425975 Msa0560180:CDS
CAATGGGATCCTACCTGAAA+TGG 0.346472 4_1:+59424150 None:intergenic
AAAATTTCAAATTGCTCAAT+GGG 0.352317 4_1:-59428348 Msa0560180:five_prime_UTR
ACTGGAATCATCAATATTAC+TGG 0.361001 4_1:+59424024 None:intergenic
GGATAGGGCAGCCACAGTTT+TGG 0.367511 4_1:-59427246 Msa0560180:CDS
CGTTCTGTGTTGTGTTGGAT+TGG 0.373220 4_1:+59429207 None:intergenic
TCTTGCAGTACTTGCTGGTT+TGG 0.375590 4_1:-59427105 Msa0560180:CDS
TATGTTGGGCTCAAAGGTTA+TGG 0.393304 4_1:-59424178 Msa0560180:CDS
GATTTAGGGTTTGAATGAAA+TGG 0.395767 4_1:+59429150 None:intergenic
CCTGTTGACTCAAGGGAGTA+TGG 0.400777 4_1:-59424464 Msa0560180:CDS
GGACATGAAGGAAGGGGTAT+TGG 0.405006 4_1:-59424566 Msa0560180:CDS
TTATTTAACAGGGTGACATT+GGG 0.414280 4_1:-59424736 Msa0560180:intron
AAATTGCTCAATGGGTTTAA+CGG 0.418543 4_1:-59428340 Msa0560180:five_prime_UTR
ATTGGTCTGGCAGGTATAGA+AGG 0.425872 4_1:-59426056 Msa0560180:intron
GCTCAGATTTGGCATTTGTT+CGG 0.426151 4_1:-59428288 Msa0560180:five_prime_UTR
TCCTTTGATGGTCAACAGTC+GGG 0.426635 4_1:-59427747 Msa0560180:five_prime_UTR
GTTAAAGCTGCGTTGACCTC+TGG 0.428144 4_1:-59428223 Msa0560180:five_prime_UTR
TTTATTGTGAAGCACGGAAC+TGG 0.428836 4_1:-59427818 Msa0560180:five_prime_UTR
AATAAATCACAAGTAGAATC+AGG 0.432760 4_1:+59423880 None:intergenic
TCATGTGCGTGGCTCAGATT+TGG 0.436104 4_1:-59428299 Msa0560180:five_prime_UTR
GAAGGAAGGGGTATTGGATT+GGG 0.436773 4_1:-59424560 Msa0560180:CDS
CCTGGGCGGTTGAAATCACT+TGG 0.436809 4_1:+59427200 None:intergenic
CTTATTTAACAGGGTGACAT+TGG 0.437054 4_1:-59424737 Msa0560180:intron
TTATGTGCCAGGAGCAGTAC+TGG 0.441984 4_1:+59424006 None:intergenic
TCTAATAATGGCAGCACAGT+TGG 0.442929 4_1:-59427861 Msa0560180:five_prime_UTR
TGAAGGAAGGGGTATTGGAT+TGG 0.444630 4_1:-59424561 Msa0560180:CDS
TGCGGTAGCGCTTGGAACAC+TGG 0.448752 4_1:-59428146 Msa0560180:five_prime_UTR
TTATTTATTGAGAGTTTGGT+TGG 0.452281 4_1:+59429179 None:intergenic
CAGGTGTGTCGGCTCAGGAT+AGG 0.455862 4_1:-59427262 Msa0560180:CDS
ATTATCTATTACACATTACA+TGG 0.458016 4_1:+59423787 None:intergenic
CCATACTCCCTTGAGTCAAC+AGG 0.462092 4_1:+59424464 None:intergenic
CACTTATCACAAATGAAAAC+AGG 0.465466 4_1:-59424123 Msa0560180:CDS
GAATTTAACAGCAAATTGAA+TGG 0.466315 4_1:-59424052 Msa0560180:CDS
CAACTTAATGCGGTAGCGCT+TGG 0.467840 4_1:-59428154 Msa0560180:five_prime_UTR
ATAGAATAGGTGAGGGGCTG+AGG 0.468263 4_1:-59423766 Msa0560180:three_prime_UTR
TGCTGCGTTCTGTGTTGTGT+TGG 0.469256 4_1:+59429202 None:intergenic
GGAGCAGATACAGCTCTAAC+AGG 0.470368 4_1:-59428124 Msa0560180:five_prime_UTR
AGGCAATCCCAACTCCTCAT+TGG 0.470707 4_1:+59424484 None:intergenic
GCAAAATATGTTGGGCTCAA+AGG 0.471659 4_1:-59424184 Msa0560180:CDS
AAACGAAGGAGATCTAATAA+TGG 0.473118 4_1:-59427873 Msa0560180:five_prime_UTR
AACAATCCGGCAAAATATGT+TGG 0.476857 4_1:-59424193 Msa0560180:CDS
AATTGTAATTGCAGATATTG+AGG 0.477500 4_1:-59424249 Msa0560180:intron
TCTGCAAACTGGCGAAGCTT+AGG 0.478958 4_1:+59427026 None:intergenic
AGGTGTGTCGGCTCAGGATA+GGG 0.480451 4_1:-59427261 Msa0560180:CDS
CTGAGGCTATTGAAGACATT+CGG 0.487102 4_1:-59428033 Msa0560180:five_prime_UTR
TGACAGTGGTATGTACAATT+TGG 0.488249 4_1:-59427691 Msa0560180:intron
GTGTGACTGCGGAAATCAAT+TGG 0.489196 4_1:-59424645 Msa0560180:CDS
AAATGAAAACAGGAGATACT+TGG 0.489544 4_1:-59424113 Msa0560180:CDS
GAAACCAAACGTGTGAAAAT+GGG 0.490915 4_1:-59424091 Msa0560180:CDS
CAGATTGAGGCTGCTGGCAG+AGG 0.491152 4_1:-59424608 Msa0560180:CDS
TGTAGAAGCCAATGAGGAGT+TGG 0.491158 4_1:-59424492 Msa0560180:CDS
TGCTTATAACCTACAGGATG+AGG 0.491407 4_1:-59424525 Msa0560180:CDS
TGTGTAATAGATAATAGAAT+AGG 0.492532 4_1:-59423779 Msa0560180:three_prime_UTR
AAGGAAGCTCTAATCTCTCC+AGG 0.494013 4_1:+59427765 None:intergenic
TTGTGATAAGTGATAACAAT+GGG 0.494880 4_1:+59424134 None:intergenic
CACCACAGGTGTGTCGGCTC+AGG 0.495943 4_1:-59427267 Msa0560180:CDS
GTTGGCAACACCTGAGGCTA+TGG 0.497594 4_1:-59427843 Msa0560180:five_prime_UTR
GTGAAAATGGGTCACATGTA+TGG 0.498935 4_1:-59424079 Msa0560180:CDS
GCCAAATATGGTACCACCAC+AGG 0.505213 4_1:-59427281 Msa0560180:CDS
ACAATCCGGCAAAATATGTT+GGG 0.506282 4_1:-59424192 Msa0560180:CDS
CACCCTCTCTCTCGCGTCCA+CGG 0.507943 4_1:-59429086 Msa0560180:intron
GACTCAAGGGAGTATGGAAT+TGG 0.510546 4_1:-59424458 Msa0560180:CDS
ATTGTAATTGCAGATATTGA+GGG 0.510691 4_1:-59424248 Msa0560180:intron
TGGGATTGCCTGTTGACTCA+AGG 0.511648 4_1:-59424472 Msa0560180:CDS
TTTAGCGGGAAAATATGGCC+TGG 0.513539 4_1:+59427182 None:intergenic
TAAAGGTGCTCTTTGTTGAA+AGG 0.514646 4_1:-59423579 Msa0560180:three_prime_UTR
TTAGCGGGAAAATATGGCCT+GGG 0.516577 4_1:+59427183 None:intergenic
TTCCTTTGATGGTCAACAGT+CGG 0.517538 4_1:-59427748 Msa0560180:five_prime_UTR
GGTGGTATCTTGAAGAGAGC+TGG 0.518284 4_1:-59427149 Msa0560180:CDS
ATTGCAGATATTGAGGGACT+TGG 0.519933 4_1:-59424242 Msa0560180:intron
CTTTGTTGAAAGGTATCTCG+TGG 0.520045 4_1:-59423569 Msa0560180:three_prime_UTR
GTCTTCAATAGCCTCAGGTA+TGG 0.520814 4_1:+59428039 None:intergenic
GGTTCAGACAGTCCAACAAA+AGG 0.521369 4_1:-59428070 Msa0560180:five_prime_UTR
GGGATTGCCTGTTGACTCAA+GGG 0.524496 4_1:-59424471 Msa0560180:CDS
CTATAACAGTTAGCTGTGAA+TGG 0.526297 4_1:+59425976 None:intergenic
TCTTGCAATGCAACAGATTG+AGG 0.526543 4_1:-59424621 Msa0560180:CDS
GTAGAAGCCAATGAGGAGTT+GGG 0.529410 4_1:-59424491 Msa0560180:CDS
TCCCGACTGTTGACCATCAA+AGG 0.529835 4_1:+59427746 None:intergenic
TTGATTTCCGCAGTCACACC+TGG 0.532360 4_1:+59424649 None:intergenic
AATTTCTATACTGCTTCAGA+TGG 0.533048 4_1:-59423923 Msa0560180:three_prime_UTR
TCTGATGATAATGATGACTT+CGG 0.539827 4_1:-59428091 Msa0560180:five_prime_UTR
GCGGTAGCGCTTGGAACACT+GGG 0.540082 4_1:-59428145 Msa0560180:five_prime_UTR
TGGACGCGAGAGAGAGGGTG+TGG 0.542232 4_1:+59429089 None:intergenic
GGCTGCTGGCAGAGGTGTGT+TGG 0.543552 4_1:-59424600 Msa0560180:CDS
CATACCACATTGCGACATGA+AGG 0.544172 4_1:+59428250 None:intergenic
GGAGCATATTGCGATGGTAA+AGG 0.544393 4_1:-59425935 Msa0560180:intron
AAGCATGAAAGAGGAAGACC+TGG 0.546167 4_1:-59427783 Msa0560180:five_prime_UTR
CGAATGTCTTCAATAGCCTC+AGG 0.546934 4_1:+59428034 None:intergenic
GAAGCTAATGACAAACAATC+CGG 0.547961 4_1:-59424206 Msa0560180:CDS
GCTTCGTGCTTATAACCTAC+AGG 0.549079 4_1:-59424531 Msa0560180:CDS
TGCACTAATACCAACAATGT+GGG 0.551549 4_1:-59426001 Msa0560180:CDS
GATGATTCCAGTACTGCTCC+TGG 0.554163 4_1:-59424013 Msa0560180:CDS
ATGGTTTGTCCATTTCAGGT+AGG 0.561182 4_1:-59424159 Msa0560180:CDS
ACAATAAAAGCCATAGCCTC+AGG 0.561239 4_1:+59427833 None:intergenic
TCTTCGAGGACATGAAGGAA+GGG 0.561452 4_1:-59424573 Msa0560180:CDS
ATGGATGTGATGTTCTTGTG+AGG 0.562152 4_1:-59424712 Msa0560180:CDS
ATTAGTACTTCAGATGGTAG+TGG 0.563625 4_1:-59427918 Msa0560180:intron
ATGCAACAGATTGAGGCTGC+TGG 0.565430 4_1:-59424614 Msa0560180:CDS
GAGACATATTTGGATCTGCC+AGG 0.566429 4_1:-59424667 Msa0560180:CDS
CCAAGTGATTTCAACCGCCC+AGG 0.570750 4_1:-59427200 Msa0560180:CDS
GGAGTATGGAATTGGTGCAC+AGG 0.571226 4_1:-59424450 Msa0560180:intron
TAACAGGGTGACATTGGGGA+TGG 0.572072 4_1:-59424731 Msa0560180:intron
TTGCAGATATTGAGGGACTT+GGG 0.572398 4_1:-59424241 Msa0560180:intron
GCACTAATACCAACAATGTG+GGG 0.575469 4_1:-59426000 Msa0560180:CDS
AGTTTGTATAAGCATGAAAG+AGG 0.575891 4_1:-59427792 Msa0560180:five_prime_UTR
GGTTATAAGCACGAAGCTTG+TGG 0.577439 4_1:+59424537 None:intergenic
ATCTTCGAGGACATGAAGGA+AGG 0.578424 4_1:-59424574 Msa0560180:CDS
GCTGCGTTGACCTCTGGAGG+AGG 0.578530 4_1:-59428217 Msa0560180:five_prime_UTR
ACCTCACACAGAACTGCCAC+AGG 0.581651 4_1:+59427080 None:intergenic
TAGAATAGGTGAGGGGCTGA+GGG 0.582487 4_1:-59423765 Msa0560180:three_prime_UTR
TATGTCACAACAGAAGAGGA+AGG 0.582497 4_1:-59423954 Msa0560180:three_prime_UTR
AGAAGAAGCCATTTAGTTTG+GGG 0.582512 4_1:+59429122 None:intergenic
TACAGCATTCACTGTGACAG+TGG 0.582981 4_1:-59427705 Msa0560180:five_prime_UTR
TGACCGTGGACGCGAGAGAG+AGG 0.584520 4_1:+59429083 None:intergenic
AATGGGTCACATGTATGGCT+TGG 0.585495 4_1:-59424074 Msa0560180:CDS
TGTGAGGTTGTAGATGATGA+TGG 0.585772 4_1:-59427065 Msa0560180:CDS
CTTCGAGGACATGAAGGAAG+GGG 0.588755 4_1:-59424572 Msa0560180:CDS
AAAGCTGCGTTGACCTCTGG+AGG 0.591046 4_1:-59428220 Msa0560180:five_prime_UTR
CTGTCACAGTGAATGCTGTA+CGG 0.591136 4_1:+59427708 None:intergenic
ACTTGCTGGTTTGGATCCTG+TGG 0.591421 4_1:-59427096 Msa0560180:CDS
ATAGATAATAGAATAGGTGA+GGG 0.591575 4_1:-59423773 Msa0560180:three_prime_UTR
TAACCTACAGGATGAGGGAA+GGG 0.594297 4_1:-59424519 Msa0560180:CDS
GATACAGCTCTAACAGGCAG+TGG 0.594402 4_1:-59428118 Msa0560180:five_prime_UTR
GGTGTGTTGGTATATCTTCG+AGG 0.595300 4_1:-59424587 Msa0560180:CDS
GATAAACTAGTGGAACGTGC+TGG 0.595479 4_1:-59426027 Msa0560180:CDS
AAGGAAGAGAGATAAACTAG+TGG 0.595527 4_1:-59426037 Msa0560180:CDS
GCTATTGAAGACATTCGGAA+TGG 0.596453 4_1:-59428028 Msa0560180:five_prime_UTR
TAGTTTCATTATACACGAGT+GGG 0.596731 4_1:-59423654 Msa0560180:three_prime_UTR
GACCGTGGACGCGAGAGAGA+GGG 0.599560 4_1:+59429084 None:intergenic
TGAAGACATTCGGAATGGAA+AGG 0.600427 4_1:-59428023 Msa0560180:intron
AATAGATAATAGAATAGGTG+AGG 0.601516 4_1:-59423774 Msa0560180:three_prime_UTR
GCTTATAACCTACAGGATGA+GGG 0.601860 4_1:-59424524 Msa0560180:CDS
AAATTATGTCACAACAGAAG+AGG 0.604340 4_1:-59423958 Msa0560180:three_prime_UTR
TATTTAACAGGGTGACATTG+GGG 0.607649 4_1:-59424735 Msa0560180:intron
TATCCCTTCCCTCATCCTGT+AGG 0.610379 4_1:+59424516 None:intergenic
GTACACTCAGAGTGTCTCAC+AGG 0.612117 4_1:-59424689 Msa0560180:CDS
ATCCTGAGCCGACACACCTG+TGG 0.612282 4_1:+59427265 None:intergenic
GTATATCTTCGAGGACATGA+AGG 0.613709 4_1:-59424578 Msa0560180:CDS
ATACCACATTGCGACATGAA+GGG 0.616657 4_1:+59428251 None:intergenic
ATGTCACAACAGAAGAGGAA+GGG 0.617763 4_1:-59423953 Msa0560180:three_prime_UTR
TCCTGTGGCAGTTCTGTGTG+AGG 0.618636 4_1:-59427081 Msa0560180:CDS
CTGCACTAATACCAACAATG+TGG 0.619531 4_1:-59426002 Msa0560180:CDS
ATAGTTTCATTATACACGAG+TGG 0.620861 4_1:-59423655 Msa0560180:three_prime_UTR
AAGCTTAGGTAATCTAGCCA+TGG 0.622161 4_1:+59427040 None:intergenic
ATAACCTACAGGATGAGGGA+AGG 0.623311 4_1:-59424520 Msa0560180:CDS
TGGATGTGATGTTCTTGTGA+GGG 0.626484 4_1:-59424711 Msa0560180:CDS
TGACTTCTGTAGAAAACTAG+AGG 0.627964 4_1:-59423690 Msa0560180:three_prime_UTR
TTCCCGCTAAAATACAGGGA+AGG 0.631313 4_1:-59427170 Msa0560180:CDS
TGGTACCACCACAGGTGTGT+CGG 0.632234 4_1:-59427273 Msa0560180:CDS
TGTAGATGATGATGGTTCCA+TGG 0.633135 4_1:-59427057 Msa0560180:CDS
CCGCTAAAATACAGGGAAGG+TGG 0.634097 4_1:-59427167 Msa0560180:CDS
CCGTCTATGATTCATGTGCG+TGG 0.635896 4_1:-59428310 Msa0560180:five_prime_UTR
CTGAGCCGACACACCTGTGG+TGG 0.636032 4_1:+59427268 None:intergenic
ATGAGAATGCTCAAAGATGT+TGG 0.637351 4_1:+59429230 None:intergenic
GCACCTTAATCACTTATACA+AGG 0.639090 4_1:+59423615 None:intergenic
AGCACAGTTGGCAACACCTG+AGG 0.640668 4_1:-59427849 Msa0560180:five_prime_UTR
CACTAATACCAACAATGTGG+GGG 0.642333 4_1:-59425999 Msa0560180:CDS
TGGGATGGAGCATATTGCGA+TGG 0.648423 4_1:-59425941 Msa0560180:CDS
CCACGCACATGAATCATAGA+CGG 0.649929 4_1:+59428310 None:intergenic
GGATGCAAGGGCCAAAACTG+TGG 0.663388 4_1:+59427235 None:intergenic
GACGAGGACAGAGAAAACGA+AGG 0.678938 4_1:-59427887 Msa0560180:five_prime_UTR
GGATACTGTAGAAGCCAATG+AGG 0.679133 4_1:-59424498 Msa0560180:CDS
TGAATCAGCACAACTTAATG+CGG 0.679998 4_1:-59428164 Msa0560180:five_prime_UTR
GCGGGAAAATATGGCCTGGG+CGG 0.682425 4_1:+59427186 None:intergenic
GGTAGTGGTTGTAGATGACG+AGG 0.685375 4_1:-59427903 Msa0560180:five_prime_UTR
TTTGTGATAAGTGATAACAA+TGG 0.686821 4_1:+59424133 None:intergenic
ATTCCCTTCATGTCGCAATG+TGG 0.695574 4_1:-59428254 Msa0560180:five_prime_UTR
TAGATAATAGAATAGGTGAG+GGG 0.707032 4_1:-59423772 Msa0560180:three_prime_UTR
GGATCTGCCAGGTGTGACTG+CGG 0.722494 4_1:-59424656 Msa0560180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATCTTAATTTTTAGTTA+TGG - chr4_1:59423872-59423891 Msa0560180:three_prime_UTR 10.0%
!!! ATAATAATTTCTTATTTTTG+TGG - chr4_1:59424366-59424385 Msa0560180:intron 10.0%
!!! TAATAATTTCTTATTTTTGT+GGG - chr4_1:59424367-59424386 Msa0560180:intron 10.0%
!! TTTAATAAAATATAACTTTG+TGG - chr4_1:59425448-59425467 Msa0560180:intron 10.0%
!! TCAATATATGATTAAAAAAA+AGG + chr4_1:59427097-59427116 None:intergenic 10.0%
!!! GTTTTTTTTTTATTTTCTTT+AGG - chr4_1:59427871-59427890 Msa0560180:five_prime_UTR 10.0%
!! TTATTTATTTATTGAGAGTT+TGG + chr4_1:59423634-59423653 None:intergenic 15.0%
!! ATTAAAGCAGTTAAAAAATT+GGG + chr4_1:59423819-59423838 None:intergenic 15.0%
!! AATTAAAGCAGTTAAAAAAT+TGG + chr4_1:59423820-59423839 None:intergenic 15.0%
!! AACTAAAAATTAAGATAATC+TGG + chr4_1:59423871-59423890 None:intergenic 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG - chr4_1:59426010-59426029 Msa0560180:CDS 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG - chr4_1:59426011-59426030 Msa0560180:CDS 15.0%
!! TCTATATTGAACTATATATA+TGG - chr4_1:59426908-59426927 Msa0560180:intron 15.0%
!!! TAACTTTGATTTTAACTAAA+TGG - chr4_1:59426962-59426981 Msa0560180:intron 15.0%
!! AAAAAAAACTAAAGAAAGTA+TGG + chr4_1:59427203-59427222 None:intergenic 15.0%
!!! ATTCATTTTGAAAAAATTCA+GGG + chr4_1:59427621-59427640 None:intergenic 15.0%
!!! TATTCATTTTGAAAAAATTC+AGG + chr4_1:59427622-59427641 None:intergenic 15.0%
!!! ATCTTAATTTTTAGTTATGG+TGG - chr4_1:59423875-59423894 Msa0560180:three_prime_UTR 20.0%
!!! GTCATTTTTTAATTTACTAC+CGG + chr4_1:59424230-59424249 None:intergenic 20.0%
!! AAAAATTTCAAATTGCTCAA+TGG - chr4_1:59424457-59424476 Msa0560180:CDS 20.0%
!! AAAATTTCAAATTGCTCAAT+GGG - chr4_1:59424458-59424477 Msa0560180:CDS 20.0%
!!! GGTATTCTATATAAAAGTTT+TGG - chr4_1:59424827-59424846 Msa0560180:intron 20.0%
!! TAAATAATAAAAAGCTCATG+AGG - chr4_1:59425971-59425990 Msa0560180:CDS 20.0%
!! AAATAATAAAAAGCTCATGA+GGG - chr4_1:59425972-59425991 Msa0560180:CDS 20.0%
!!! AATTTTTGAAAGACAAATCA+CGG + chr4_1:59426356-59426375 None:intergenic 20.0%
!! AACTAGAAATTCAATCAATT+TGG - chr4_1:59426386-59426405 Msa0560180:intron 20.0%
!!! TAGGATTTCAATTTTTGTAA+TGG + chr4_1:59426529-59426548 None:intergenic 20.0%
!! ATATAAAGACAAAATAACCA+CGG + chr4_1:59426629-59426648 None:intergenic 20.0%
!! AAAATGAATAGAGAAGAAAA+AGG - chr4_1:59427632-59427651 Msa0560180:intron 20.0%
!! ATGCAAAAATGTTGAAAAAA+GGG + chr4_1:59427915-59427934 None:intergenic 20.0%
!! AATGCAAAAATGTTGAAAAA+AGG + chr4_1:59427916-59427935 None:intergenic 20.0%
!!! ATTTTACTGTATTCAATTCA+TGG - chr4_1:59428433-59428452 Msa0560180:intron 20.0%
!! ATTATCTATTACACATTACA+TGG + chr4_1:59429022-59429041 None:intergenic 20.0%
!! TGTGTAATAGATAATAGAAT+AGG - chr4_1:59429027-59429046 Msa0560180:intron 20.0%
! TTATTTATTGAGAGTTTGGT+TGG + chr4_1:59423630-59423649 None:intergenic 25.0%
! AACAAAACAGATAAGATAAG+AGG + chr4_1:59424040-59424059 None:intergenic 25.0%
! CATCTCCATAAAAGAAAATT+GGG + chr4_1:59424129-59424148 None:intergenic 25.0%
!! CAATTTTCTTTTATGGAGAT+GGG - chr4_1:59424128-59424147 Msa0560180:CDS 25.0%
!! ATTTTTGTGGGAATTATGTT+TGG - chr4_1:59424379-59424398 Msa0560180:intron 25.0%
! TGTCTCTTTCTATTCAATAT+AGG - chr4_1:59424428-59424447 Msa0560180:intron 25.0%
! GTCTCTTTCTATTCAATATA+GGG - chr4_1:59424429-59424448 Msa0560180:intron 25.0%
! GTACTAATGTCAGTTAATAA+CGG + chr4_1:59424876-59424895 None:intergenic 25.0%
!!! TGTTTTAGATGATGTAAGAA+TGG + chr4_1:59425195-59425214 None:intergenic 25.0%
!! ACTTATCAATGCAATTTTGT+AGG - chr4_1:59425500-59425519 Msa0560180:intron 25.0%
!!! TATCTATTGCTGACTTAATA+AGG - chr4_1:59425823-59425842 Msa0560180:intron 25.0%
!!! AGGGTTTTTAAGTAATTAGT+AGG - chr4_1:59425901-59425920 Msa0560180:intron 25.0%
!!! GTTTTTAAGTAATTAGTAGG+TGG - chr4_1:59425904-59425923 Msa0560180:intron 25.0%
! TTATTAGCAAGTTTCTCATT+AGG - chr4_1:59425946-59425965 Msa0560180:CDS 25.0%
! TATTAGCAAGTTTCTCATTA+GGG - chr4_1:59425947-59425966 Msa0560180:CDS 25.0%
! GATGACAATTAAGGAAAATA+GGG + chr4_1:59426185-59426204 None:intergenic 25.0%
! AGATGACAATTAAGGAAAAT+AGG + chr4_1:59426186-59426205 None:intergenic 25.0%
! GAAGAAATAGATGACAATTA+AGG + chr4_1:59426194-59426213 None:intergenic 25.0%
! ACAACAAAAATTGCATACAA+TGG + chr4_1:59426267-59426286 None:intergenic 25.0%
!!! TTGTATGCAATTTTTGTTGT+CGG - chr4_1:59426267-59426286 Msa0560180:intron 25.0%
!!! TCAATCAATTTGGTTTTTTG+TGG - chr4_1:59426396-59426415 Msa0560180:intron 25.0%
! TAATGGAAGATAAACAAGAT+AGG + chr4_1:59426548-59426567 None:intergenic 25.0%
! AAAAATTTAACTGCGCTTAA+AGG + chr4_1:59426606-59426625 None:intergenic 25.0%
! AAATTAGCTAAAGATGAATC+AGG + chr4_1:59426673-59426692 None:intergenic 25.0%
! AAAAGAAACAAAAAGAATCC+AGG + chr4_1:59426701-59426720 None:intergenic 25.0%
!!! GATTCTTTTTGTTTCTTTTC+TGG - chr4_1:59426702-59426721 Msa0560180:intron 25.0%
!!! ATTTATTTTTTTGACAGCCA+CGG + chr4_1:59427141-59427160 None:intergenic 25.0%
! TCATCAAACAAGTTATGTAT+TGG + chr4_1:59427317-59427336 None:intergenic 25.0%
!! GTAAGTAGTTCGATATTTTA+AGG + chr4_1:59427411-59427430 None:intergenic 25.0%
! TGCAAAAATGTTGAAAAAAG+GGG + chr4_1:59427914-59427933 None:intergenic 25.0%
!! TTTCAACATTTTTGCATTCA+AGG - chr4_1:59427918-59427937 Msa0560180:intron 25.0%
! ATTGAAAGGTTCAAGATAAT+TGG + chr4_1:59427987-59428006 None:intergenic 25.0%
!! TTGGACATTTCTTATTTAAC+AGG - chr4_1:59428059-59428078 Msa0560180:five_prime_UTR 25.0%
!! TGGACATTTCTTATTTAACA+GGG - chr4_1:59428060-59428079 Msa0560180:five_prime_UTR 25.0%
! TACATGATTATTAAGTTCAC+TGG - chr4_1:59428461-59428480 Msa0560180:intron 25.0%
!! AACATAGAACTAGATGTTTT+AGG - chr4_1:59428501-59428520 Msa0560180:intron 25.0%
! TTGTGATAAGTGATAACAAT+GGG + chr4_1:59428675-59428694 None:intergenic 25.0%
! TTTGTGATAAGTGATAACAA+TGG + chr4_1:59428676-59428695 None:intergenic 25.0%
! GAATTTAACAGCAAATTGAA+TGG - chr4_1:59428754-59428773 Msa0560180:intron 25.0%
!! ACATAATTTGTGTATCTTAC+AGG + chr4_1:59428837-59428856 None:intergenic 25.0%
! AATAAATCACAAGTAGAATC+AGG + chr4_1:59428929-59428948 None:intergenic 25.0%
! AATAGATAATAGAATAGGTG+AGG - chr4_1:59429032-59429051 Msa0560180:intron 25.0%
! ATAGATAATAGAATAGGTGA+GGG - chr4_1:59429033-59429052 Msa0560180:intron 25.0%
! GATTTAGGGTTTGAATGAAA+TGG + chr4_1:59423659-59423678 None:intergenic 30.0%
CAGAAGATAAATGGAAAAGA+AGG + chr4_1:59423768-59423787 None:intergenic 30.0%
TGAAATAGAACCTAAGAAAG+CGG + chr4_1:59423794-59423813 None:intergenic 30.0%
CATAAAAGAAAATTGGGCTA+AGG + chr4_1:59424123-59424142 None:intergenic 30.0%
! CTTAGCCCAATTTTCTTTTA+TGG - chr4_1:59424121-59424140 Msa0560180:CDS 30.0%
CCATCTCCATAAAAGAAAAT+TGG + chr4_1:59424130-59424149 None:intergenic 30.0%
! CCAATTTTCTTTTATGGAGA+TGG - chr4_1:59424127-59424146 Msa0560180:CDS 30.0%
CAAAATTGAATGTAATGTGC+TGG - chr4_1:59424249-59424268 Msa0560180:intron 30.0%
! AAATTGCTCAATGGGTTTAA+CGG - chr4_1:59424466-59424485 Msa0560180:CDS 30.0%
AGACCTAAAAAATGAAGATC+TGG - chr4_1:59424612-59424631 Msa0560180:CDS 30.0%
!!! CAACCAGATCTTCATTTTTT+AGG + chr4_1:59424618-59424637 None:intergenic 30.0%
CTAAAAAATGAAGATCTGGT+TGG - chr4_1:59424616-59424635 Msa0560180:CDS 30.0%
! TCTGATGATAATGATGACTT+CGG - chr4_1:59424715-59424734 Msa0560180:CDS 30.0%
! GTTAATAACGGAAATCTAAG+TGG + chr4_1:59424864-59424883 None:intergenic 30.0%
AAACGAAGGAGATCTAATAA+TGG - chr4_1:59424933-59424952 Msa0560180:intron 30.0%
AGTTTGTATAAGCATGAAAG+AGG - chr4_1:59425014-59425033 Msa0560180:intron 30.0%
GTAAATGTCTGTTACATACT+GGG + chr4_1:59425350-59425369 None:intergenic 30.0%
AGTAAATGTCTGTTACATAC+TGG + chr4_1:59425351-59425370 None:intergenic 30.0%
! ATTTTGTAGGATGCCAAATA+TGG - chr4_1:59425513-59425532 Msa0560180:intron 30.0%
! TTTTGAATCTTTGGATGCAA+GGG + chr4_1:59425586-59425605 None:intergenic 30.0%
!!! ATCACTTGGTTTTGAATCTT+TGG + chr4_1:59425595-59425614 None:intergenic 30.0%
!!! TGTATTTTAGCGGGAAAATA+TGG + chr4_1:59425632-59425651 None:intergenic 30.0%
! ATATTTTCCCGCTAAAATAC+AGG - chr4_1:59425631-59425650 Msa0560180:intron 30.0%
! TATTTTCCCGCTAAAATACA+GGG - chr4_1:59425632-59425651 Msa0560180:intron 30.0%
CTTAAAAACCCTCTCATATT+GGG + chr4_1:59425893-59425912 None:intergenic 30.0%
ACTTAAAAACCCTCTCATAT+TGG + chr4_1:59425894-59425913 None:intergenic 30.0%
GTAATGACAATAGTAGTAGA+GGG + chr4_1:59426149-59426168 None:intergenic 30.0%
AGTAATGACAATAGTAGTAG+AGG + chr4_1:59426150-59426169 None:intergenic 30.0%
!! TGATAGCAACCTCTAAAATT+AGG + chr4_1:59426430-59426449 None:intergenic 30.0%
AGGTAAGGAACAAAAAATAG+AGG + chr4_1:59426653-59426672 None:intergenic 30.0%
! CTTTAGCTAATTTTTCTTCC+TGG - chr4_1:59426680-59426699 Msa0560180:intron 30.0%
!!! TGTTATAGGTCACTTTTAGA+TGG - chr4_1:59426845-59426864 Msa0560180:intron 30.0%
!!! GTTATAGGTCACTTTTAGAT+GGG - chr4_1:59426846-59426865 Msa0560180:intron 30.0%
ATCATATTGCTCTACCATAT+TGG + chr4_1:59427010-59427029 None:intergenic 30.0%
ATAAAAATTGAGTCACATCG+AGG - chr4_1:59427167-59427186 Msa0560180:CDS 30.0%
TAGCTTCTATTCCAAATGTA+GGG + chr4_1:59427343-59427362 None:intergenic 30.0%
TTAGCTTCTATTCCAAATGT+AGG + chr4_1:59427344-59427363 None:intergenic 30.0%
!! AGAATTTCAAGTTAACTCAC+GGG + chr4_1:59427500-59427519 None:intergenic 30.0%
!! CAGAATTTCAAGTTAACTCA+CGG + chr4_1:59427501-59427520 None:intergenic 30.0%
GATCTAGTCATCTTTCTATT+TGG - chr4_1:59427768-59427787 Msa0560180:five_prime_UTR 30.0%
! AATTCTCGTTGACTGAAATT+GGG - chr4_1:59427810-59427829 Msa0560180:five_prime_UTR 30.0%
AAACTGATCTTGTCAGTTAA+AGG + chr4_1:59427855-59427874 None:intergenic 30.0%
TTATTTAACAGGGTGACATT+GGG - chr4_1:59428070-59428089 Msa0560180:five_prime_UTR 30.0%
!! ACATCTAGTTCTATGTTGTA+TGG + chr4_1:59428498-59428517 None:intergenic 30.0%
CACTTATCACAAATGAAAAC+AGG - chr4_1:59428683-59428702 Msa0560180:intron 30.0%
AAATGAAAACAGGAGATACT+TGG - chr4_1:59428693-59428712 Msa0560180:intron 30.0%
ACTGGAATCATCAATATTAC+TGG + chr4_1:59428785-59428804 None:intergenic 30.0%
TGTATCTTACAGGAAAAAAC+AGG + chr4_1:59428827-59428846 None:intergenic 30.0%
AAATTATGTCACAACAGAAG+AGG - chr4_1:59428848-59428867 Msa0560180:intron 30.0%
AATTTCTATACTGCTTCAGA+TGG - chr4_1:59428883-59428902 Msa0560180:intron 30.0%
GAAAAATCGTGCAAATGAAT+TGG + chr4_1:59428958-59428977 None:intergenic 30.0%
TAGATAATAGAATAGGTGAG+GGG - chr4_1:59429034-59429053 Msa0560180:intron 30.0%
ATAGTTTCATTATACACGAG+TGG - chr4_1:59429151-59429170 Msa0560180:five_prime_UTR 30.0%
TAGTTTCATTATACACGAGT+GGG - chr4_1:59429152-59429171 Msa0560180:five_prime_UTR 30.0%
GTACCTTGTATAAGTGATTA+AGG - chr4_1:59429188-59429207 Msa0560180:five_prime_UTR 30.0%
! GTGCATTTTTGTGACAATAA+AGG - chr4_1:59429210-59429229 Msa0560180:five_prime_UTR 30.0%
ATGAGAATGCTCAAAGATGT+TGG + chr4_1:59423579-59423598 None:intergenic 35.0%
AGTTTGGGGAATAGGATTTA+GGG + chr4_1:59423673-59423692 None:intergenic 35.0%
TAGTTTGGGGAATAGGATTT+AGG + chr4_1:59423674-59423693 None:intergenic 35.0%
ATCCTATTCCCCAAACTAAA+TGG - chr4_1:59423676-59423695 Msa0560180:three_prime_UTR 35.0%
!! AGAAGAAGCCATTTAGTTTG+GGG + chr4_1:59423687-59423706 None:intergenic 35.0%
! GAGAAGAAGCCATTTAGTTT+GGG + chr4_1:59423688-59423707 None:intergenic 35.0%
AGAGAAGAAGCCATTTAGTT+TGG + chr4_1:59423689-59423708 None:intergenic 35.0%
GAAAAGAAGGAAGAAAGAGA+AGG + chr4_1:59423755-59423774 None:intergenic 35.0%
AAGCGGTTTCAGAAGATAAA+TGG + chr4_1:59423777-59423796 None:intergenic 35.0%
AGATAAGAGGAACAAAGTTG+TGG + chr4_1:59424027-59424046 None:intergenic 35.0%
GGAAAGTTTAGGTAAAGCTT+TGG + chr4_1:59424102-59424121 None:intergenic 35.0%
AATTGGGCTAAGGAAAGTTT+AGG + chr4_1:59424113-59424132 None:intergenic 35.0%
TGAATCAGCACAACTTAATG+CGG - chr4_1:59424642-59424661 Msa0560180:CDS 35.0%
! ATGGAAGCAAAACCTTTTGT+TGG + chr4_1:59424751-59424770 None:intergenic 35.0%
! AATAACGGAAATCTAAGTGG+AGG + chr4_1:59424861-59424880 None:intergenic 35.0%
ACTGACATTAGTACTTCAGA+TGG - chr4_1:59424882-59424901 Msa0560180:intron 35.0%
ATTAGTACTTCAGATGGTAG+TGG - chr4_1:59424888-59424907 Msa0560180:intron 35.0%
! ATGGCTTTTATTGTGAAGCA+CGG - chr4_1:59424982-59425001 Msa0560180:intron 35.0%
TGACAGTGGTATGTACAATT+TGG - chr4_1:59425115-59425134 Msa0560180:intron 35.0%
ATTTACTCACCTTCATGTGA+TGG - chr4_1:59425217-59425236 Msa0560180:intron 35.0%
TAAAGTTGACCATCACATGA+AGG + chr4_1:59425229-59425248 None:intergenic 35.0%
TTCATGTGATGGTCAACTTT+AGG - chr4_1:59425228-59425247 Msa0560180:intron 35.0%
TCATGTGATGGTCAACTTTA+GGG - chr4_1:59425229-59425248 Msa0560180:intron 35.0%
!! GTTTTGAATCTTTGGATGCA+AGG + chr4_1:59425587-59425606 None:intergenic 35.0%
TGCGAAATACGTTGTATGTT+AGG - chr4_1:59425866-59425885 Msa0560180:intron 35.0%
TAATTAGTAGGTGGCTAAGT+AGG - chr4_1:59425913-59425932 Msa0560180:intron 35.0%
AATTAGTAGGTGGCTAAGTA+GGG - chr4_1:59425914-59425933 Msa0560180:intron 35.0%
GGGAAATTCTTATGAGTTGT+AGG - chr4_1:59426031-59426050 Msa0560180:CDS 35.0%
CTTATGAGTTGTAGGTTTGA+CGG - chr4_1:59426039-59426058 Msa0560180:CDS 35.0%
! TGACGGAATATGTTTCTGTT+AGG - chr4_1:59426056-59426075 Msa0560180:intron 35.0%
!! TGTTACTGTTGGTTTATTGC+AGG - chr4_1:59426226-59426245 Msa0560180:intron 35.0%
CTGAAAGCAAAATATGAACG+TGG + chr4_1:59426293-59426312 None:intergenic 35.0%
TGTTTAATAACTGCAGTGCA+AGG + chr4_1:59426575-59426594 None:intergenic 35.0%
AGCTAAAGATGAATCAGGTA+AGG + chr4_1:59426668-59426687 None:intergenic 35.0%
AAGGAAGAGAGATAAACTAG+TGG - chr4_1:59426769-59426788 Msa0560180:intron 35.0%
TGCACTAATACCAACAATGT+GGG - chr4_1:59426805-59426824 Msa0560180:intron 35.0%
CTATAACAGTTAGCTGTGAA+TGG + chr4_1:59426833-59426852 None:intergenic 35.0%
CATTCACAGCTAACTGTTAT+AGG - chr4_1:59426831-59426850 Msa0560180:intron 35.0%
GCATAAGAGAGATACCAATA+TGG - chr4_1:59426993-59427012 Msa0560180:CDS 35.0%
ATTATTATTACACCCTCAGC+AGG + chr4_1:59427235-59427254 None:intergenic 35.0%
TTTGATGAAGTCCCTACATT+TGG - chr4_1:59427329-59427348 Msa0560180:intron 35.0%
TGGAATAGAAGCTAAGCTAT+TGG - chr4_1:59427349-59427368 Msa0560180:intron 35.0%
AAGCTAAGCTATTGGCATAA+AGG - chr4_1:59427357-59427376 Msa0560180:intron 35.0%
!!! ATTTTAAGGTGCCAATCCTA+GGG + chr4_1:59427397-59427416 None:intergenic 35.0%
!!! TATTTTAAGGTGCCAATCCT+AGG + chr4_1:59427398-59427417 None:intergenic 35.0%
TCCCAAAAAATCTCAGATAG+AGG - chr4_1:59427461-59427480 Msa0560180:intron 35.0%
!!! GCCTCTATCTGAGATTTTTT+GGG + chr4_1:59427465-59427484 None:intergenic 35.0%
GTTCTGATCCACAAATACTT+TGG - chr4_1:59427547-59427566 Msa0560180:intron 35.0%
! TGTTGAAGCCAAAGTATTTG+TGG + chr4_1:59427558-59427577 None:intergenic 35.0%
GTAAAAAGAACCTTGATCCA+GGG - chr4_1:59427654-59427673 Msa0560180:intron 35.0%
ACACAAAGTTTACCTCTTAG+TGG + chr4_1:59427694-59427713 None:intergenic 35.0%
GAGGTAAACTTTGTGTGTTT+AGG - chr4_1:59427698-59427717 Msa0560180:exon 35.0%
AAGACTTCACTCAATCTTGT+GGG + chr4_1:59427735-59427754 None:intergenic 35.0%
! GAATTCTCGTTGACTGAAAT+TGG - chr4_1:59427809-59427828 Msa0560180:five_prime_UTR 35.0%
GAAATGTCCAACCATAACAA+AGG + chr4_1:59428050-59428069 None:intergenic 35.0%
CTTATTTAACAGGGTGACAT+TGG - chr4_1:59428069-59428088 Msa0560180:five_prime_UTR 35.0%
TATTTAACAGGGTGACATTG+GGG - chr4_1:59428071-59428090 Msa0560180:five_prime_UTR 35.0%
!! AACTAGATGTTTTAGGCAGT+TGG - chr4_1:59428508-59428527 Msa0560180:intron 35.0%
GAAGCTAATGACAAACAATC+CGG - chr4_1:59428600-59428619 Msa0560180:intron 35.0%
AACAATCCGGCAAAATATGT+TGG - chr4_1:59428613-59428632 Msa0560180:intron 35.0%
ACAATCCGGCAAAATATGTT+GGG - chr4_1:59428614-59428633 Msa0560180:intron 35.0%
GAAACCAAACGTGTGAAAAT+GGG - chr4_1:59428715-59428734 Msa0560180:intron 35.0%
AAAAAACAGGTTTATGTGCC+AGG + chr4_1:59428814-59428833 None:intergenic 35.0%
TGACTTCTGTAGAAAACTAG+AGG - chr4_1:59429116-59429135 Msa0560180:five_prime_UTR 35.0%
GCACCTTAATCACTTATACA+AGG + chr4_1:59429194-59429213 None:intergenic 35.0%
!! TAAAGGTGCTCTTTGTTGAA+AGG - chr4_1:59429227-59429246 Msa0560180:five_prime_UTR 35.0%
!! AGCCATTTAGTTTGGGGAAT+AGG + chr4_1:59423681-59423700 None:intergenic 40.0%
!! TCTTCTGAAACCGCTTTCTT+AGG - chr4_1:59423781-59423800 Msa0560180:three_prime_UTR 40.0%
TTACACTAACACGTCAACAC+CGG - chr4_1:59424208-59424227 Msa0560180:CDS 40.0%
TGTCAAACACAGACACATGT+CGG - chr4_1:59424272-59424291 Msa0560180:intron 40.0%
GCTCAGATTTGGCATTTGTT+CGG - chr4_1:59424518-59424537 Msa0560180:CDS 40.0%
ATACCACATTGCGACATGAA+GGG + chr4_1:59424558-59424577 None:intergenic 40.0%
CTGAGGCTATTGAAGACATT+CGG - chr4_1:59424773-59424792 Msa0560180:intron 40.0%
GCTATTGAAGACATTCGGAA+TGG - chr4_1:59424778-59424797 Msa0560180:intron 40.0%
TGAAGACATTCGGAATGGAA+AGG - chr4_1:59424783-59424802 Msa0560180:intron 40.0%
TCTAATAATGGCAGCACAGT+TGG - chr4_1:59424945-59424964 Msa0560180:intron 40.0%
ACAATAAAAGCCATAGCCTC+AGG + chr4_1:59424976-59424995 None:intergenic 40.0%
TTTATTGTGAAGCACGGAAC+TGG - chr4_1:59424988-59425007 Msa0560180:intron 40.0%
GAGATTAGAGCTTCCTTTGA+TGG - chr4_1:59425047-59425066 Msa0560180:intron 40.0%
! TTCCTTTGATGGTCAACAGT+CGG - chr4_1:59425058-59425077 Msa0560180:intron 40.0%
!!! GGTGCGTGCATTTTTTTATC+TGG - chr4_1:59425136-59425155 Msa0560180:intron 40.0%
! ATTTTGTTCCTACGCAACTC+AGG - chr4_1:59425476-59425495 Msa0560180:intron 40.0%
TGTGAGGTTGTAGATGATGA+TGG - chr4_1:59425741-59425760 Msa0560180:intron 40.0%
!! TGTAGATGATGATGGTTCCA+TGG - chr4_1:59425749-59425768 Msa0560180:intron 40.0%
AAGCTTAGGTAATCTAGCCA+TGG + chr4_1:59425769-59425788 None:intergenic 40.0%
! AATTTTCACGCTCTGCAAAC+TGG + chr4_1:59425794-59425813 None:intergenic 40.0%
ATGTTAGGACCCAATATGAG+AGG - chr4_1:59425881-59425900 Msa0560180:intron 40.0%
TGTTAGGACCCAATATGAGA+GGG - chr4_1:59425882-59425901 Msa0560180:intron 40.0%
! TGTTTGTGCTGTGTTACTGT+TGG - chr4_1:59426215-59426234 Msa0560180:intron 40.0%
TGGTTTATTGCAGGATCCAT+TGG - chr4_1:59426235-59426254 Msa0560180:intron 40.0%
GGTTTATTGCAGGATCCATT+GGG - chr4_1:59426236-59426255 Msa0560180:intron 40.0%
CATACAATGGTAGAACCCAA+TGG + chr4_1:59426254-59426273 None:intergenic 40.0%
! GTGCTTGCTCCTAATTTTAG+AGG - chr4_1:59426418-59426437 Msa0560180:intron 40.0%
! CTGCAGTGCAAGGTATTTAA+TGG + chr4_1:59426565-59426584 None:intergenic 40.0%
! AGCGCAGTTAAATTTTTCCG+TGG - chr4_1:59426609-59426628 Msa0560180:intron 40.0%
!!! TCTTTTCTGGTTACCTATCG+AGG - chr4_1:59426715-59426734 Msa0560180:intron 40.0%
TAGGTGTTAATCTCCTCGAT+AGG + chr4_1:59426731-59426750 None:intergenic 40.0%
TCGAGGAGATTAACACCTAT+TGG - chr4_1:59426732-59426751 Msa0560180:intron 40.0%
GAGATTAACACCTATTGGTC+TGG - chr4_1:59426737-59426756 Msa0560180:intron 40.0%
CTGCACTAATACCAACAATG+TGG - chr4_1:59426804-59426823 Msa0560180:intron 40.0%
GCACTAATACCAACAATGTG+GGG - chr4_1:59426806-59426825 Msa0560180:intron 40.0%
CACTAATACCAACAATGTGG+GGG - chr4_1:59426807-59426826 Msa0560180:intron 40.0%
!!! TAGGTCACTTTTAGATGGGA+TGG - chr4_1:59426850-59426869 Msa0560180:intron 40.0%
! TTTTTATATCCTGCCTGCTG+AGG - chr4_1:59427219-59427238 Msa0560180:CDS 40.0%
! TTTTATATCCTGCCTGCTGA+GGG - chr4_1:59427220-59427239 Msa0560180:CDS 40.0%
CTCTCTGGACTTCAAGAATT+GGG + chr4_1:59427275-59427294 None:intergenic 40.0%
TCTCTCTGGACTTCAAGAAT+TGG + chr4_1:59427276-59427295 None:intergenic 40.0%
! TTGTGAGTTGAAACTCTCTC+TGG + chr4_1:59427290-59427309 None:intergenic 40.0%
GGAAAATGACATACTTCCCT+AGG - chr4_1:59427378-59427397 Msa0560180:intron 40.0%
ATGACATACTTCCCTAGGAT+TGG - chr4_1:59427383-59427402 Msa0560180:intron 40.0%
!!! TTTTTTGGGACTTCTAGCCT+TGG + chr4_1:59427451-59427470 None:intergenic 40.0%
!!! GGCCTCTATCTGAGATTTTT+TGG + chr4_1:59427466-59427485 None:intergenic 40.0%
ATGATATAGAATGCCTGAGC+AGG - chr4_1:59427584-59427603 Msa0560180:intron 40.0%
GGTAAAAAGAACCTTGATCC+AGG - chr4_1:59427653-59427672 Msa0560180:intron 40.0%
! CTCTTAGTGGATCCTATTTG+TGG + chr4_1:59427681-59427700 None:intergenic 40.0%
CACAAATAGGATCCACTAAG+AGG - chr4_1:59427679-59427698 Msa0560180:intron 40.0%
CAAGACTTCACTCAATCTTG+TGG + chr4_1:59427736-59427755 None:intergenic 40.0%
CACAAGATTGAGTGAAGTCT+TGG - chr4_1:59427734-59427753 Msa0560180:five_prime_UTR 40.0%
AGAAAGATGACTAGATCCCT+GGG + chr4_1:59427765-59427784 None:intergenic 40.0%
TAGAAAGATGACTAGATCCC+TGG + chr4_1:59427766-59427785 None:intergenic 40.0%
TCAACGAGAATTCCATTCCT+GGG + chr4_1:59427802-59427821 None:intergenic 40.0%
AGCCTGCAGGATTTGAAAAT+CGG - chr4_1:59427952-59427971 Msa0560180:intron 40.0%
! TCGACACTTAGCCTTTGTTA+TGG - chr4_1:59428036-59428055 Msa0560180:five_prime_UTR 40.0%
! CACTTAGCCTTTGTTATGGT+TGG - chr4_1:59428040-59428059 Msa0560180:five_prime_UTR 40.0%
ATGGATGTGATGTTCTTGTG+AGG - chr4_1:59428094-59428113 Msa0560180:five_prime_UTR 40.0%
TGGATGTGATGTTCTTGTGA+GGG - chr4_1:59428095-59428114 Msa0560180:five_prime_UTR 40.0%
TGTCTCACAGGAGACATATT+TGG - chr4_1:59428129-59428148 Msa0560180:five_prime_UTR 40.0%
TCTTGCAATGCAACAGATTG+AGG - chr4_1:59428185-59428204 Msa0560180:five_prime_UTR 40.0%
GTATATCTTCGAGGACATGA+AGG - chr4_1:59428228-59428247 Msa0560180:five_prime_UTR 40.0%
TGCTTATAACCTACAGGATG+AGG - chr4_1:59428281-59428300 Msa0560180:five_prime_UTR 40.0%
GCTTATAACCTACAGGATGA+GGG - chr4_1:59428282-59428301 Msa0560180:five_prime_UTR 40.0%
GCAGTTGGATTCACTCATAA+TGG - chr4_1:59428523-59428542 Msa0560180:intron 40.0%
! TTGAGCCCAACATATTTTGC+CGG + chr4_1:59428622-59428641 None:intergenic 40.0%
GCAAAATATGTTGGGCTCAA+AGG - chr4_1:59428622-59428641 Msa0560180:intron 40.0%
TATGTTGGGCTCAAAGGTTA+TGG - chr4_1:59428628-59428647 Msa0560180:intron 40.0%
! GGTTATGGTTTGTCCATTTC+AGG - chr4_1:59428643-59428662 Msa0560180:intron 40.0%
! ATGGTTTGTCCATTTCAGGT+AGG - chr4_1:59428647-59428666 Msa0560180:intron 40.0%
GGAAACCAAACGTGTGAAAA+TGG - chr4_1:59428714-59428733 Msa0560180:intron 40.0%
GTGAAAATGGGTCACATGTA+TGG - chr4_1:59428727-59428746 Msa0560180:intron 40.0%
TATGTCACAACAGAAGAGGA+AGG - chr4_1:59428852-59428871 Msa0560180:intron 40.0%
ATGTCACAACAGAAGAGGAA+GGG - chr4_1:59428853-59428872 Msa0560180:intron 40.0%
! TGCACGATTTTTCTTCTGTC+TGG - chr4_1:59428965-59428984 Msa0560180:intron 40.0%
CGTTCTGTGTTGTGTTGGAT+TGG + chr4_1:59423602-59423621 None:intergenic 45.0%
AGAGAAGGTAAAACTGACCG+TGG + chr4_1:59423740-59423759 None:intergenic 45.0%
! GGTAAAGCTTTGGCAAGACA+TGG + chr4_1:59424092-59424111 None:intergenic 45.0%
! ACGCCTTTGATCAGAAGTGT+CGG - chr4_1:59424304-59424323 Msa0560180:intron 45.0%
! GTACCGACACTTCTGATCAA+AGG + chr4_1:59424310-59424329 None:intergenic 45.0%
CCACGCACATGAATCATAGA+CGG + chr4_1:59424499-59424518 None:intergenic 45.0%
ATTCCCTTCATGTCGCAATG+TGG - chr4_1:59424552-59424571 Msa0560180:CDS 45.0%
CATACCACATTGCGACATGA+AGG + chr4_1:59424559-59424578 None:intergenic 45.0%
GGTTCAGACAGTCCAACAAA+AGG - chr4_1:59424736-59424755 Msa0560180:intron 45.0%
! AGGTTTTGCTTCCATACCTG+AGG - chr4_1:59424756-59424775 Msa0560180:intron 45.0%
GTCTTCAATAGCCTCAGGTA+TGG + chr4_1:59424770-59424789 None:intergenic 45.0%
CGAATGTCTTCAATAGCCTC+AGG + chr4_1:59424775-59424794 None:intergenic 45.0%
GACATTCGGAATGGAAAGGT+CGG - chr4_1:59424787-59424806 Msa0560180:intron 45.0%
AAGCATGAAAGAGGAAGACC+TGG - chr4_1:59425023-59425042 Msa0560180:intron 45.0%
! AAGGAAGCTCTAATCTCTCC+AGG + chr4_1:59425044-59425063 None:intergenic 45.0%
! TCCTTTGATGGTCAACAGTC+GGG - chr4_1:59425059-59425078 Msa0560180:intron 45.0%
CTGTCACAGTGAATGCTGTA+CGG + chr4_1:59425101-59425120 None:intergenic 45.0%
TACAGCATTCACTGTGACAG+TGG - chr4_1:59425101-59425120 Msa0560180:intron 45.0%
GATAAGTTCCTGAGTTGCGT+AGG + chr4_1:59425487-59425506 None:intergenic 45.0%
ACCTGTGGTGGTACCATATT+TGG + chr4_1:59425529-59425548 None:intergenic 45.0%
TTAGCGGGAAAATATGGCCT+GGG + chr4_1:59425626-59425645 None:intergenic 45.0%
TTTAGCGGGAAAATATGGCC+TGG + chr4_1:59425627-59425646 None:intergenic 45.0%
TTCCCGCTAAAATACAGGGA+AGG - chr4_1:59425636-59425655 Msa0560180:intron 45.0%
!!! CACCTTCCCTGTATTTTAGC+GGG + chr4_1:59425641-59425660 None:intergenic 45.0%
!! CCACCTTCCCTGTATTTTAG+CGG + chr4_1:59425642-59425661 None:intergenic 45.0%
GTTGATCTTGCAGTACTTGC+TGG - chr4_1:59425696-59425715 Msa0560180:intron 45.0%
! TCTTGCAGTACTTGCTGGTT+TGG - chr4_1:59425701-59425720 Msa0560180:intron 45.0%
GTTTCTGTTAGGACCAGAGT+AGG - chr4_1:59426067-59426086 Msa0560180:intron 45.0%
TCTGAGTCAGTGAGTTGTGT+CGG - chr4_1:59426095-59426114 Msa0560180:intron 45.0%
GTTGTGTCGGAGCTTAACTT+TGG - chr4_1:59426108-59426127 Msa0560180:intron 45.0%
! TTAACACCTATTGGTCTGGC+AGG - chr4_1:59426741-59426760 Msa0560180:intron 45.0%
TCTATACCTGCCAGACCAAT+AGG + chr4_1:59426750-59426769 None:intergenic 45.0%
! ATTGGTCTGGCAGGTATAGA+AGG - chr4_1:59426750-59426769 Msa0560180:intron 45.0%
GATAAACTAGTGGAACGTGC+TGG - chr4_1:59426779-59426798 Msa0560180:intron 45.0%
GGAGCATATTGCGATGGTAA+AGG - chr4_1:59426871-59426890 Msa0560180:intron 45.0%
AACCTGTTGTTACATTGCCG+TGG - chr4_1:59427121-59427140 Msa0560180:CDS 45.0%
AACTCACGGGAAAAAGACGA+AGG + chr4_1:59427487-59427506 None:intergenic 45.0%
ATTCTGCAGCATTGTCCTGA+TGG - chr4_1:59427515-59427534 Msa0560180:intron 45.0%
TATTTGTGGACCCTGGATCA+AGG + chr4_1:59427667-59427686 None:intergenic 45.0%
TTGATCCAGGGTCCACAAAT+AGG - chr4_1:59427666-59427685 Msa0560180:intron 45.0%
CAATCTTGTGGGCATTAGAG+TGG + chr4_1:59427724-59427743 None:intergenic 45.0%
TCTATTTGGATGTGTAGCCC+AGG - chr4_1:59427782-59427801 Msa0560180:five_prime_UTR 45.0%
GTCAACGAGAATTCCATTCC+TGG + chr4_1:59427803-59427822 None:intergenic 45.0%
! GGCATTTTCTATAAGCCTGC+AGG - chr4_1:59427939-59427958 Msa0560180:intron 45.0%
!!! TGCCGATTTTCAAATCCTGC+AGG + chr4_1:59427957-59427976 None:intergenic 45.0%
GAGACATATTTGGATCTGCC+AGG - chr4_1:59428139-59428158 Msa0560180:five_prime_UTR 45.0%
GTGTGACTGCGGAAATCAAT+TGG - chr4_1:59428161-59428180 Msa0560180:five_prime_UTR 45.0%
! GGTGTGTTGGTATATCTTCG+AGG - chr4_1:59428219-59428238 Msa0560180:five_prime_UTR 45.0%
ATCTTCGAGGACATGAAGGA+AGG - chr4_1:59428232-59428251 Msa0560180:five_prime_UTR 45.0%
TCTTCGAGGACATGAAGGAA+GGG - chr4_1:59428233-59428252 Msa0560180:five_prime_UTR 45.0%
!! TGAAGGAAGGGGTATTGGAT+TGG - chr4_1:59428245-59428264 Msa0560180:five_prime_UTR 45.0%
!! GAAGGAAGGGGTATTGGATT+GGG - chr4_1:59428246-59428265 Msa0560180:five_prime_UTR 45.0%
GGTTATAAGCACGAAGCTTG+TGG + chr4_1:59428272-59428291 None:intergenic 45.0%
GCTTCGTGCTTATAACCTAC+AGG - chr4_1:59428275-59428294 Msa0560180:five_prime_UTR 45.0%
ATAACCTACAGGATGAGGGA+AGG - chr4_1:59428286-59428305 Msa0560180:five_prime_UTR 45.0%
TAACCTACAGGATGAGGGAA+GGG - chr4_1:59428287-59428306 Msa0560180:five_prime_UTR 45.0%
GGATACTGTAGAAGCCAATG+AGG - chr4_1:59428308-59428327 Msa0560180:five_prime_UTR 45.0%
TGTAGAAGCCAATGAGGAGT+TGG - chr4_1:59428314-59428333 Msa0560180:five_prime_UTR 45.0%
GTAGAAGCCAATGAGGAGTT+GGG - chr4_1:59428315-59428334 Msa0560180:five_prime_UTR 45.0%
! GACTCAAGGGAGTATGGAAT+TGG - chr4_1:59428348-59428367 Msa0560180:five_prime_UTR 45.0%
CAATGGGATCCTACCTGAAA+TGG + chr4_1:59428659-59428678 None:intergenic 45.0%
! GTGACCCATTTTCACACGTT+TGG + chr4_1:59428722-59428741 None:intergenic 45.0%
AATGGGTCACATGTATGGCT+TGG - chr4_1:59428732-59428751 Msa0560180:intron 45.0%
!!! ATATAAAATTTAAAATTGAA+AGG + chr4_1:59428001-59428020 None:intergenic 5.0%
TGCTGCGTTCTGTGTTGTGT+TGG + chr4_1:59423607-59423626 None:intergenic 50.0%
CCGTCTATGATTCATGTGCG+TGG - chr4_1:59424496-59424515 Msa0560180:CDS 50.0%
TCATGTGCGTGGCTCAGATT+TGG - chr4_1:59424507-59424526 Msa0560180:CDS 50.0%
! GTTAAAGCTGCGTTGACCTC+TGG - chr4_1:59424583-59424602 Msa0560180:CDS 50.0%
!! TTTTAGGTCTCCTCCTCCAG+AGG + chr4_1:59424602-59424621 None:intergenic 50.0%
CAACTTAATGCGGTAGCGCT+TGG - chr4_1:59424652-59424671 Msa0560180:CDS 50.0%
! GGAGCAGATACAGCTCTAAC+AGG - chr4_1:59424682-59424701 Msa0560180:CDS 50.0%
! GATACAGCTCTAACAGGCAG+TGG - chr4_1:59424688-59424707 Msa0560180:CDS 50.0%
TCGGTACTCTGTCTCTCTGT+GGG - chr4_1:59424806-59424825 Msa0560180:intron 50.0%
! GGTAGTGGTTGTAGATGACG+AGG - chr4_1:59424903-59424922 Msa0560180:intron 50.0%
GACGAGGACAGAGAAAACGA+AGG - chr4_1:59424919-59424938 Msa0560180:intron 50.0%
TCCCGACTGTTGACCATCAA+AGG + chr4_1:59425063-59425082 None:intergenic 50.0%
TGCCTACACAAGTGCAGCTA+GGG + chr4_1:59425269-59425288 None:intergenic 50.0%
ATGCCTACACAAGTGCAGCT+AGG + chr4_1:59425270-59425289 None:intergenic 50.0%
GCCAAATATGGTACCACCAC+AGG - chr4_1:59425525-59425544 Msa0560180:intron 50.0%
CCGCTAAAATACAGGGAAGG+TGG - chr4_1:59425639-59425658 Msa0560180:intron 50.0%
GGTGGTATCTTGAAGAGAGC+TGG - chr4_1:59425657-59425676 Msa0560180:intron 50.0%
!! ACTTGCTGGTTTGGATCCTG+TGG - chr4_1:59425710-59425729 Msa0560180:intron 50.0%
TCTGCAAACTGGCGAAGCTT+AGG + chr4_1:59425783-59425802 None:intergenic 50.0%
GACTCAGAGGAATCCTACTC+TGG + chr4_1:59426083-59426102 None:intergenic 50.0%
!! GACACAACTCACTGACTCAG+AGG + chr4_1:59426096-59426115 None:intergenic 50.0%
CACGGTAGCAGACAACATGA+GGG + chr4_1:59426338-59426357 None:intergenic 50.0%
TCACGGTAGCAGACAACATG+AGG + chr4_1:59426339-59426358 None:intergenic 50.0%
TGGGATGGAGCATATTGCGA+TGG - chr4_1:59426865-59426884 Msa0560180:intron 50.0%
AGCCACGGCAATGTAACAAC+AGG + chr4_1:59427126-59427145 None:intergenic 50.0%
TTATTACACCCTCAGCAGGC+AGG + chr4_1:59427231-59427250 None:intergenic 50.0%
AAATTGTCTGCCAGCTGCCA+AGG - chr4_1:59427431-59427450 Msa0560180:intron 50.0%
CAGAACTCTGCAAAGCCATC+AGG + chr4_1:59427533-59427552 None:intergenic 50.0%
TGGATCCTATTTGTGGACCC+TGG + chr4_1:59427674-59427693 None:intergenic 50.0%
TTGGATGTGTAGCCCAGGAA+TGG - chr4_1:59427787-59427806 Msa0560180:five_prime_UTR 50.0%
TAACAGGGTGACATTGGGGA+TGG - chr4_1:59428075-59428094 Msa0560180:five_prime_UTR 50.0%
! GTACACTCAGAGTGTCTCAC+AGG - chr4_1:59428117-59428136 Msa0560180:five_prime_UTR 50.0%
TTGATTTCCGCAGTCACACC+TGG + chr4_1:59428160-59428179 None:intergenic 50.0%
ATGCAACAGATTGAGGCTGC+TGG - chr4_1:59428192-59428211 Msa0560180:five_prime_UTR 50.0%
CTTCGAGGACATGAAGGAAG+GGG - chr4_1:59428234-59428253 Msa0560180:five_prime_UTR 50.0%
! GGACATGAAGGAAGGGGTAT+TGG - chr4_1:59428240-59428259 Msa0560180:five_prime_UTR 50.0%
TATCCCTTCCCTCATCCTGT+AGG + chr4_1:59428293-59428312 None:intergenic 50.0%
AGGCAATCCCAACTCCTCAT+TGG + chr4_1:59428325-59428344 None:intergenic 50.0%
!! TGGGATTGCCTGTTGACTCA+AGG - chr4_1:59428334-59428353 Msa0560180:five_prime_UTR 50.0%
!! GGGATTGCCTGTTGACTCAA+GGG - chr4_1:59428335-59428354 Msa0560180:five_prime_UTR 50.0%
CCATACTCCCTTGAGTCAAC+AGG + chr4_1:59428345-59428364 None:intergenic 50.0%
!! CCTGTTGACTCAAGGGAGTA+TGG - chr4_1:59428342-59428361 Msa0560180:five_prime_UTR 50.0%
GGAGTATGGAATTGGTGCAC+AGG - chr4_1:59428356-59428375 Msa0560180:five_prime_UTR 50.0%
GATGATTCCAGTACTGCTCC+TGG - chr4_1:59428793-59428812 Msa0560180:intron 50.0%
TTATGTGCCAGGAGCAGTAC+TGG + chr4_1:59428803-59428822 None:intergenic 50.0%
ATAGAATAGGTGAGGGGCTG+AGG - chr4_1:59429040-59429059 Msa0560180:intron 50.0%
TAGAATAGGTGAGGGGCTGA+GGG - chr4_1:59429041-59429060 Msa0560180:intron 50.0%
CACAGACACATGTCGGACGT+TGG - chr4_1:59424279-59424298 Msa0560180:intron 55.0%
! AAAGCTGCGTTGACCTCTGG+AGG - chr4_1:59424586-59424605 Msa0560180:CDS 55.0%
GTCGGTACTCTGTCTCTCTG+TGG - chr4_1:59424805-59424824 Msa0560180:intron 55.0%
AGCACAGTTGGCAACACCTG+AGG - chr4_1:59424957-59424976 Msa0560180:intron 55.0%
GTTGGCAACACCTGAGGCTA+TGG - chr4_1:59424963-59424982 Msa0560180:intron 55.0%
TGGTACCACCACAGGTGTGT+CGG - chr4_1:59425533-59425552 Msa0560180:intron 55.0%
!! AGGTGTGTCGGCTCAGGATA+GGG - chr4_1:59425545-59425564 Msa0560180:intron 55.0%
! GGATAGGGCAGCCACAGTTT+TGG - chr4_1:59425560-59425579 Msa0560180:intron 55.0%
GGATGCAAGGGCCAAAACTG+TGG + chr4_1:59425574-59425593 None:intergenic 55.0%
CCTGGGCGGTTGAAATCACT+TGG + chr4_1:59425609-59425628 None:intergenic 55.0%
CCAAGTGATTTCAACCGCCC+AGG - chr4_1:59425606-59425625 Msa0560180:intron 55.0%
TCCTGTGGCAGTTCTGTGTG+AGG - chr4_1:59425725-59425744 Msa0560180:intron 55.0%
ACCTCACACAGAACTGCCAC+AGG + chr4_1:59425729-59425748 None:intergenic 55.0%
GTGAATGGCCCCCACATTGT+TGG + chr4_1:59426818-59426837 None:intergenic 55.0%
GGACATTCATCTGCCTGCTC+AGG + chr4_1:59427600-59427619 None:intergenic 55.0%
TGAAGTCTTGGCCAGTCCCA+GGG - chr4_1:59427746-59427765 Msa0560180:five_prime_UTR 55.0%
GATGACTAGATCCCTGGGAC+TGG + chr4_1:59427760-59427779 None:intergenic 55.0%
TGCGGTAGCGCTTGGAACAC+TGG - chr4_1:59424660-59424679 Msa0560180:CDS 60.0%
GCGGTAGCGCTTGGAACACT+GGG - chr4_1:59424661-59424680 Msa0560180:CDS 60.0%
CGCCCTAGCTGCACTTGTGT+AGG - chr4_1:59425264-59425283 Msa0560180:intron 60.0%
ATCCTGAGCCGACACACCTG+TGG + chr4_1:59425544-59425563 None:intergenic 60.0%
!! CAGGTGTGTCGGCTCAGGAT+AGG - chr4_1:59425544-59425563 Msa0560180:intron 60.0%
GCGGGAAAATATGGCCTGGG+CGG + chr4_1:59425623-59425642 None:intergenic 60.0%
!! GGACTTCTAGCCTTGGCAGC+TGG + chr4_1:59427444-59427463 None:intergenic 60.0%
GTGAAGTCTTGGCCAGTCCC+AGG - chr4_1:59427745-59427764 Msa0560180:five_prime_UTR 60.0%
GGATCTGCCAGGTGTGACTG+CGG - chr4_1:59428150-59428169 Msa0560180:five_prime_UTR 60.0%
CAGATTGAGGCTGCTGGCAG+AGG - chr4_1:59428198-59428217 Msa0560180:five_prime_UTR 60.0%
TGGACGCGAGAGAGAGGGTG+TGG + chr4_1:59423720-59423739 None:intergenic 65.0%
CACCCTCTCTCTCGCGTCCA+CGG - chr4_1:59423720-59423739 Msa0560180:three_prime_UTR 65.0%
GACCGTGGACGCGAGAGAGA+GGG + chr4_1:59423725-59423744 None:intergenic 65.0%
TGACCGTGGACGCGAGAGAG+AGG + chr4_1:59423726-59423745 None:intergenic 65.0%
! GCTGCGTTGACCTCTGGAGG+AGG - chr4_1:59424589-59424608 Msa0560180:CDS 65.0%
CTGAGCCGACACACCTGTGG+TGG + chr4_1:59425541-59425560 None:intergenic 65.0%
!! CACCACAGGTGTGTCGGCTC+AGG - chr4_1:59425539-59425558 Msa0560180:intron 65.0%
! GGCTGCTGGCAGAGGTGTGT+TGG - chr4_1:59428206-59428225 Msa0560180:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59423569 59429259 59423569 ID=Msa0560180;Name=Msa0560180
chr4_1 mRNA 59423569 59429259 59423569 ID=Msa0560180-mRNA-1;Parent=Msa0560180;Name=Msa0560180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=752|1|1|1|0.66|0.71|7|437|337
chr4_1 exon 59423569 59424257 59423569 ID=Msa0560180-mRNA-1:exon:18362;Parent=Msa0560180-mRNA-1
chr4_1 exon 59424451 59424747 59424451 ID=Msa0560180-mRNA-1:exon:18361;Parent=Msa0560180-mRNA-1
chr4_1 exon 59425936 59426065 59425936 ID=Msa0560180-mRNA-1:exon:18360;Parent=Msa0560180-mRNA-1
chr4_1 exon 59426984 59427306 59426984 ID=Msa0560180-mRNA-1:exon:18359;Parent=Msa0560180-mRNA-1
chr4_1 exon 59427692 59427927 59427692 ID=Msa0560180-mRNA-1:exon:18358;Parent=Msa0560180-mRNA-1
chr4_1 exon 59428024 59428378 59428024 ID=Msa0560180-mRNA-1:exon:18357;Parent=Msa0560180-mRNA-1
chr4_1 exon 59429087 59429259 59429087 ID=Msa0560180-mRNA-1:exon:18356;Parent=Msa0560180-mRNA-1
chr4_1 five_prime_UTR 59429087 59429259 59429087 ID=Msa0560180-mRNA-1:five_prime_utr;Parent=Msa0560180-mRNA-1
chr4_1 five_prime_UTR 59428024 59428378 59428024 ID=Msa0560180-mRNA-1:five_prime_utr;Parent=Msa0560180-mRNA-1
chr4_1 five_prime_UTR 59427704 59427927 59427704 ID=Msa0560180-mRNA-1:five_prime_utr;Parent=Msa0560180-mRNA-1
chr4_1 CDS 59427692 59427703 59427692 ID=Msa0560180-mRNA-1:cds;Parent=Msa0560180-mRNA-1
chr4_1 CDS 59426984 59427306 59426984 ID=Msa0560180-mRNA-1:cds;Parent=Msa0560180-mRNA-1
chr4_1 CDS 59425936 59426065 59425936 ID=Msa0560180-mRNA-1:cds;Parent=Msa0560180-mRNA-1
chr4_1 CDS 59424451 59424747 59424451 ID=Msa0560180-mRNA-1:cds;Parent=Msa0560180-mRNA-1
chr4_1 CDS 59424006 59424257 59424006 ID=Msa0560180-mRNA-1:cds;Parent=Msa0560180-mRNA-1
chr4_1 three_prime_UTR 59423569 59424005 59423569 ID=Msa0560180-mRNA-1:three_prime_utr;Parent=Msa0560180-mRNA-1
Gene Sequence

>Msa0560180

ATGTACAATTTGGATGCCAAATATGGTACCACCACAGGTGTGTCGGCTCAGGATAGGGCAGCCACAGTTTTGGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCGCTAAAATACAGGGAAGGTGGTATCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCAGTACTTGCTGGTTTGGATCCTGTGGCAGTTCTGTGTGAGGTTGTAGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAATTATATCTATTGCTGACTTAATAAGGTATAGAAGGAAGAGAGATAAACTAGTGGAACGTGCTGGTGCTGCACTAATACCAACAATGTGGGGGCCATTCACAGCTAACTGTTATAGGTCACTTTTAGATGGGATGGAGCATATTGCGATGGTAAAGGGTGACATTGGGGATGGATGTGATGTTCTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGGTGTGACTGCGGAAATCAATTGGCTCTTGCAATGCAACAGATTGAGGCTGCTGGCAGAGGTGTGTTGGTATATCTTCGAGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGAGGGAAGGGATACTGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATATTGAGGGACTTGGGTGTTCGTTCTATGAAGCTAATGACAAACAATCCGGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGTCCATTTCAGGTAGGATCCCATTGTTATCACTTATCACAAATGAAAACAGGAGATACTTGGAAACCAAACGTGTGAAAATGGGTCACATGTATGGCTTGGAATTTAACAGCAAATTGAATGGTAATGCCAGTAATATTGATGATTCCAGTACTGCTCCTGGCACATAA

Protein sequence

>Msa0560180

MYNLDAKYGTTTGVSAQDRAATVLALASKDSKPSDFNRPGHIFPLKYREGGILKRAGHTEASVDLAVLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVERAGAALIPTMWGPFTANCYRSLLDGMEHIAMVKGDIGDGCDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLSISGRIPLLSLITNENRRYLETKRVKMGHMYGLEFNSKLNGNASNIDDSSTAPGT*