AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514260 MtrunA17_Chr3g0122461 96.585 205 3 1 1 201 1 205 5.84e-148 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514260 AT1G27385.1 75.000 148 31 1 54 201 61 202 1.05e-76 229
Msa0514260 AT1G27385.3 74.324 148 32 1 54 201 61 202 7.56e-76 228
Msa0514260 AT1G27385.2 74.324 148 31 2 54 201 61 201 4.29e-74 222
Msa0514260 AT1G27385.4 74.324 148 31 2 54 201 61 201 1.96e-73 223

Find 71 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATAATTAAGTGCAAAAT+TGG 0.188824 3_4:+64940897 Msa0514260:three_prime_UTR
CATCTACGGCTCAGTGATTC+AGG 0.227333 3_4:-64941035 None:intergenic
TATAATCATAAAATAATTAT+TGG 0.243829 3_4:-64940970 None:intergenic
TTGGACTGGCCCAATGTTTA+CGG 0.293987 3_4:-64940581 None:intergenic
GCTGTGTTGAAGGCCATTTC+AGG 0.308532 3_4:+64938015 Msa0514260:CDS
CGAAAACCTCCTCTCTTATT+CGG 0.315627 3_4:-64937880 None:intergenic
ATGGGTTGCTTTAGACAAAA+AGG 0.324861 3_4:+64938199 Msa0514260:CDS
GTAAAGGTTTGAATTGGAAT+TGG 0.326338 3_4:-64937843 None:intergenic
CAAACTACGAATATGGTTAT+TGG 0.349962 3_4:+64938146 Msa0514260:CDS
TGAATACATACCCAACTGTT+AGG 0.369842 3_4:+64938392 Msa0514260:CDS
GATAGGACAAACTACGAATA+TGG 0.387015 3_4:+64938139 Msa0514260:CDS
TCCTCAAGAAGCTGTGTTGA+AGG 0.392868 3_4:+64938005 Msa0514260:CDS
TGCAATTAAGAAAATGAAAC+AGG 0.399689 3_4:-64941059 None:intergenic
CCAAGTTGTTTCCAGCGAAC+AGG 0.415316 3_4:+64940600 Msa0514260:CDS
ATAAAACATACCTGGGGAAT+GGG 0.419641 3_4:-64938493 None:intergenic
CGTCCCTTTCACCGTGGTAA+TGG 0.421777 3_4:+64937922 Msa0514260:CDS
AGGCATGTCAATATATCAAT+TGG 0.427642 3_4:-64940824 None:intergenic
TTTCTTTGACACAACAGATT+GGG 0.444590 3_4:+64941095 Msa0514260:three_prime_UTR
GTGAAAGGGACGAGCCTTAA+CGG 0.448927 3_4:-64937911 None:intergenic
CCTGTTCGCTGGAAACAACT+TGG 0.461413 3_4:-64940600 None:intergenic
CGGATGATTCTACTAATGAA+TGG 0.463843 3_4:+64938180 Msa0514260:CDS
GAAGATGGAATTACCTGAAA+TGG 0.471281 3_4:-64938028 None:intergenic
CATAAAACATACCTGGGGAA+TGG 0.489276 3_4:-64938494 None:intergenic
GAATACATACCCAACTGTTA+GGG 0.490009 3_4:+64938393 Msa0514260:CDS
ATGCTATGAGGAGGGATGAC+AGG 0.511597 3_4:+64940758 Msa0514260:CDS
AATATGTGTCCGTAAACATT+GGG 0.511909 3_4:+64940572 Msa0514260:CDS
AAATATGTGTCCGTAAACAT+TGG 0.512566 3_4:+64940571 Msa0514260:CDS
GGATGATTCTACTAATGAAT+GGG 0.513339 3_4:+64938181 Msa0514260:CDS
AATTCCATTACCACGGTGAA+AGG 0.519265 3_4:-64937926 None:intergenic
GGGTTCACTGCAATAGGAAC+CGG 0.532077 3_4:+64938415 Msa0514260:CDS
AGGCAGAAATACCTGTTCGC+TGG 0.537747 3_4:-64940611 None:intergenic
TCGCTGGAAACAACTTGGAC+TGG 0.541126 3_4:-64940595 None:intergenic
GCCTTCAACACAGCTTCTTG+AGG 0.541456 3_4:-64938006 None:intergenic
ATACCTGGGGAATGGGCTGT+TGG 0.541945 3_4:-64938486 None:intergenic
ATGCCTGCTTTCTAGTGGTT+AGG 0.549502 3_4:+64940841 Msa0514260:three_prime_UTR
ATTCCATTACCACGGTGAAA+GGG 0.551205 3_4:-64937925 None:intergenic
TCATAGCATTATATACAGCT+TGG 0.551996 3_4:-64940744 None:intergenic
CAGCCTAACCACTAGAAAGC+AGG 0.556389 3_4:-64940844 None:intergenic
TTCACTGCAATAGGAACCGG+TGG 0.562823 3_4:+64938418 Msa0514260:CDS
GGATGACTTCGTGCAAGCTA+TGG 0.570776 3_4:+64938441 Msa0514260:CDS
TCTAAGACAGAAGGAAGGAT+AGG 0.570938 3_4:+64938122 Msa0514260:CDS
GCTTCGTTCAGCGATGATTG+TGG 0.572314 3_4:+64937807 Msa0514260:CDS
TTGACATGCCTGCTTTCTAG+TGG 0.576997 3_4:+64940836 Msa0514260:three_prime_UTR
AATTGGAATTGGAATTGCAA+TGG 0.580064 3_4:-64937832 None:intergenic
AATCCAACAGCCCATTCCCC+AGG 0.580170 3_4:+64938483 Msa0514260:CDS
ATCTACGGCTCAGTGATTCA+GGG 0.586429 3_4:-64941034 None:intergenic
ACTACGAATATGGTTATTGG+AGG 0.589546 3_4:+64938149 Msa0514260:CDS
TTCAACACAGCTTCTTGAGG+AGG 0.596405 3_4:-64938003 None:intergenic
GCAGAGGTATCTAAGACAGA+AGG 0.603237 3_4:+64938113 Msa0514260:intron
CTGTATATAATGCTATGAGG+AGG 0.611383 3_4:+64940749 Msa0514260:CDS
TGTATATAATGCTATGAGGA+GGG 0.612053 3_4:+64940750 Msa0514260:CDS
AATTTGAATCCGAATAAGAG+AGG 0.614217 3_4:+64937871 Msa0514260:CDS
AAGCTGTATATAATGCTATG+AGG 0.615037 3_4:+64940746 Msa0514260:CDS
AAAATGAAACAGGACATCTA+CGG 0.620359 3_4:-64941049 None:intergenic
TTGAATCCGAATAAGAGAGG+AGG 0.625769 3_4:+64937874 Msa0514260:CDS
GAAGCACAAGGTATCAGCAA+GGG 0.626581 3_4:+64940546 Msa0514260:CDS
TGAAGCACAAGGTATCAGCA+AGG 0.632271 3_4:+64940545 Msa0514260:CDS
AAGCACAAGGTATCAGCAAG+GGG 0.636193 3_4:+64940547 Msa0514260:CDS
AGGTATCTAAGACAGAAGGA+AGG 0.645582 3_4:+64938117 Msa0514260:CDS
ACTTAATTATAACGATATCG+TGG 0.647194 3_4:-64940887 None:intergenic
GGTTATTGGAGGAACTGTCA+CGG 0.650079 3_4:+64938160 Msa0514260:CDS
AATACATACCCAACTGTTAG+GGG 0.655407 3_4:+64938394 Msa0514260:CDS
ACAGGGGAGTGTGAAGCACA+AGG 0.655631 3_4:+64940534 Msa0514260:intron
TTGCACGAAGTCATCCCCAC+CGG 0.656764 3_4:-64938434 None:intergenic
CACTGCAATAGGAACCGGTG+GGG 0.661994 3_4:+64938420 Msa0514260:CDS
AACGGAGAATTCCATTACCA+CGG 0.679173 3_4:-64937933 None:intergenic
GTGTATCGTTACGAGAGCAA+CGG 0.696668 3_4:-64937951 None:intergenic
ATACATACCCAACTGTTAGG+GGG 0.700615 3_4:+64938395 Msa0514260:CDS
TCACTGCAATAGGAACCGGT+GGG 0.708899 3_4:+64938419 Msa0514260:CDS
AAGGCTCGTCCCTTTCACCG+TGG 0.745511 3_4:+64937916 Msa0514260:CDS
TCATCGTGAAAAGACGACGA+CGG 0.780619 3_4:-64937973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCAAATATTATTCTTATAA+AGG + chr3_4:64938712-64938731 Msa0514260:intron 15.0%
!! ACCTTTATAAGAATAATATT+TGG - chr3_4:64938716-64938735 None:intergenic 15.0%
!! TAACAATTTAATACAATTCT+TGG - chr3_4:64939105-64939124 None:intergenic 15.0%
!!! ACTTTTTTTTTTTTTGAACA+AGG + chr3_4:64939887-64939906 Msa0514260:intron 15.0%
!! TAAAAAGTAAAGGTTTGAAT+TGG - chr3_4:64937852-64937871 None:intergenic 20.0%
!! GGATTCAAATTAAAAAGTAA+AGG - chr3_4:64937862-64937881 None:intergenic 20.0%
!! AATTAAATCAAATGTGAAGA+TGG - chr3_4:64938046-64938065 None:intergenic 20.0%
!!! TCAATACTTTTTCAGAAATT+TGG + chr3_4:64938544-64938563 Msa0514260:intron 20.0%
!!! ATCTATCTGCTAAATATTTT+TGG + chr3_4:64939056-64939075 Msa0514260:intron 20.0%
!!! CTAAATATTTTTGGCTTATA+AGG + chr3_4:64939065-64939084 Msa0514260:intron 20.0%
!! TCAAAAGTTAGTATTTAGAA+GGG + chr3_4:64939966-64939985 Msa0514260:intron 20.0%
!!! AGCCTAAAATTTTCTTATTT+GGG - chr3_4:64940051-64940070 None:intergenic 20.0%
!!! TAGCCTAAAATTTTCTTATT+TGG - chr3_4:64940052-64940071 None:intergenic 20.0%
!!! ATGAACAGTTTTCATTAATA+TGG + chr3_4:64940450-64940469 Msa0514260:intron 20.0%
!!! TGAATTTTGTTGTATTTTTC+AGG + chr3_4:64940720-64940739 Msa0514260:intron 20.0%
!! GTTATAATTAAGTGCAAAAT+TGG + chr3_4:64940897-64940916 Msa0514260:three_prime_UTR 20.0%
!!! AAAACACAGATTTTTCGATA+AGG - chr3_4:64937720-64937739 None:intergenic 25.0%
! AAAGAGACAGAAAAAAACAA+TGG + chr3_4:64937771-64937790 Msa0514260:exon 25.0%
! GAGCTTCAAATAAATGTTAA+TGG + chr3_4:64938088-64938107 Msa0514260:intron 25.0%
! TTGATACATAAAACATACCT+GGG - chr3_4:64938503-64938522 None:intergenic 25.0%
!!! TTTTTCAGAAATTTGGACAT+TGG + chr3_4:64938551-64938570 Msa0514260:intron 25.0%
! TAAGTTGCACCTATTTATTT+AGG + chr3_4:64938574-64938593 Msa0514260:intron 25.0%
! AAGTTGCACCTATTTATTTA+GGG + chr3_4:64938575-64938594 Msa0514260:intron 25.0%
! GTATAACAAAAAAGTTGTTG+CGG - chr3_4:64938632-64938651 None:intergenic 25.0%
!!! TATTTGTTGTTATTACCGTA+AGG + chr3_4:64938742-64938761 Msa0514260:intron 25.0%
! TAGACACAAAATTAACCTTA+CGG - chr3_4:64938760-64938779 None:intergenic 25.0%
!!! AATATTTTTGGCTTATAAGG+TGG + chr3_4:64939068-64939087 Msa0514260:intron 25.0%
! ATGATAATATGTAAACCTGA+CGG - chr3_4:64939156-64939175 None:intergenic 25.0%
! TATATTCGTATCCATATTCA+AGG + chr3_4:64939405-64939424 Msa0514260:intron 25.0%
! ATATTCGTATCCATATTCAA+GGG + chr3_4:64939406-64939425 Msa0514260:intron 25.0%
!!! TCTTTTAAAAGGTCTAACTT+GGG - chr3_4:64939601-64939620 None:intergenic 25.0%
!!! TATAATTTTCAAGGACTTCA+TGG - chr3_4:64939788-64939807 None:intergenic 25.0%
! TGAAGTCCTTGAAAATTATA+TGG + chr3_4:64939788-64939807 Msa0514260:intron 25.0%
!!! TTTTTTTTTTGAACAAGGAG+AGG + chr3_4:64939892-64939911 Msa0514260:intron 25.0%
! GTCAAAAGTTAGTATTTAGA+AGG + chr3_4:64939965-64939984 Msa0514260:intron 25.0%
!! GTCCCAAATAAGAAAATTTT+AGG + chr3_4:64940046-64940065 Msa0514260:intron 25.0%
! TAAAATTCATAACTTAGTCC+CGG + chr3_4:64940210-64940229 Msa0514260:intron 25.0%
! GATCATCATTAACAATAAGT+TGG - chr3_4:64940321-64940340 None:intergenic 25.0%
! AATGTTAACATATTGCTTAC+AGG + chr3_4:64940516-64940535 Msa0514260:intron 25.0%
! ATGTTAACATATTGCTTACA+GGG + chr3_4:64940517-64940536 Msa0514260:intron 25.0%
! AAAAACAGAAAACATAGAAG+AGG - chr3_4:64940671-64940690 None:intergenic 25.0%
! ACTTAATTATAACGATATCG+TGG - chr3_4:64940890-64940909 None:intergenic 25.0%
! TGCAATTAAGAAAATGAAAC+AGG - chr3_4:64941062-64941081 None:intergenic 25.0%
!! TCATTTTCTTAATTGCAGAT+TGG + chr3_4:64941065-64941084 Msa0514260:three_prime_UTR 25.0%
AATTGGAATTGGAATTGCAA+TGG - chr3_4:64937835-64937854 None:intergenic 30.0%
GTAAAGGTTTGAATTGGAAT+TGG - chr3_4:64937846-64937865 None:intergenic 30.0%
AATTTGAATCCGAATAAGAG+AGG + chr3_4:64937871-64937890 Msa0514260:CDS 30.0%
ATAAATGTTAATGGTTGCAG+AGG + chr3_4:64938097-64938116 Msa0514260:intron 30.0%
CAAACTACGAATATGGTTAT+TGG + chr3_4:64938146-64938165 Msa0514260:CDS 30.0%
GGATGATTCTACTAATGAAT+GGG + chr3_4:64938181-64938200 Msa0514260:CDS 30.0%
TGATACATAAAACATACCTG+GGG - chr3_4:64938502-64938521 None:intergenic 30.0%
GTTGATACATAAAACATACC+TGG - chr3_4:64938504-64938523 None:intergenic 30.0%
ATCTTATATGCTGTGTAACT+TGG + chr3_4:64938791-64938810 Msa0514260:intron 30.0%
AGGTTTACATATTATCATCG+AGG + chr3_4:64939158-64939177 Msa0514260:intron 30.0%
! ACTAGTCTAAATGAGACAAT+GGG + chr3_4:64939225-64939244 Msa0514260:intron 30.0%
AAACCATTTACAGCACATAT+TGG - chr3_4:64939345-64939364 None:intergenic 30.0%
! TTCATAAGAGACTTCTAGAA+GGG - chr3_4:64939375-64939394 None:intergenic 30.0%
TTTCATAAGAGACTTCTAGA+AGG - chr3_4:64939376-64939395 None:intergenic 30.0%
TGTCCTTATAAAAAGACTAG+AGG + chr3_4:64939457-64939476 Msa0514260:intron 30.0%
!! CTTTTAAAAGGTCTAACTTG+GGG - chr3_4:64939600-64939619 None:intergenic 30.0%
!! GTCTTTTAAAAGGTCTAACT+TGG - chr3_4:64939602-64939621 None:intergenic 30.0%
! GAGAAGCCATATAATTTTCA+AGG - chr3_4:64939797-64939816 None:intergenic 30.0%
!! TACTAACTTTTGACTGTTGT+TGG - chr3_4:64939959-64939978 None:intergenic 30.0%
!!! AATTTTAGGCTAGCCTTTAA+TGG + chr3_4:64940060-64940079 Msa0514260:intron 30.0%
GGAAACTGAAATACCATTAA+AGG - chr3_4:64940076-64940095 None:intergenic 30.0%
! TAAATTTTATCATCACCCAC+CGG - chr3_4:64940232-64940251 None:intergenic 30.0%
TCTACATATCCTTATTGTGT+TGG - chr3_4:64940274-64940293 None:intergenic 30.0%
ACAATAAGGATATGTAGAGT+TGG + chr3_4:64940276-64940295 Msa0514260:intron 30.0%
TGTTAACATATTGCTTACAG+GGG + chr3_4:64940518-64940537 Msa0514260:intron 30.0%
AAATATGTGTCCGTAAACAT+TGG + chr3_4:64940571-64940590 Msa0514260:CDS 30.0%
AATATGTGTCCGTAAACATT+GGG + chr3_4:64940572-64940591 Msa0514260:CDS 30.0%
GGAAAAGAAAAAAACGAACA+AGG - chr3_4:64940634-64940653 None:intergenic 30.0%
!!! TTTTCTGTTTTTTCTGATCC+TGG + chr3_4:64940679-64940698 Msa0514260:intron 30.0%
!!! TTTCTGTTTTTTCTGATCCT+GGG + chr3_4:64940680-64940699 Msa0514260:intron 30.0%
TCATAGCATTATATACAGCT+TGG - chr3_4:64940747-64940766 None:intergenic 30.0%
AAGCTGTATATAATGCTATG+AGG + chr3_4:64940746-64940765 Msa0514260:CDS 30.0%
TGTATATAATGCTATGAGGA+GGG + chr3_4:64940750-64940769 Msa0514260:CDS 30.0%
AGGCATGTCAATATATCAAT+TGG - chr3_4:64940827-64940846 None:intergenic 30.0%
AAAATGAAACAGGACATCTA+CGG - chr3_4:64941052-64941071 None:intergenic 30.0%
! TTTTCTTTGACACAACAGAT+TGG + chr3_4:64941094-64941113 Msa0514260:three_prime_UTR 30.0%
TTTCTTTGACACAACAGATT+GGG + chr3_4:64941095-64941114 Msa0514260:three_prime_UTR 30.0%
GAAGATGGAATTACCTGAAA+TGG - chr3_4:64938031-64938050 None:intergenic 35.0%
GATAGGACAAACTACGAATA+TGG + chr3_4:64938139-64938158 Msa0514260:CDS 35.0%
ACTACGAATATGGTTATTGG+AGG + chr3_4:64938149-64938168 Msa0514260:CDS 35.0%
CGGATGATTCTACTAATGAA+TGG + chr3_4:64938180-64938199 Msa0514260:CDS 35.0%
! ATGGGTTGCTTTAGACAAAA+AGG + chr3_4:64938199-64938218 Msa0514260:CDS 35.0%
!! CTGTTGTGTGTTACTTACAT+AGG + chr3_4:64938369-64938388 Msa0514260:intron 35.0%
TGAATACATACCCAACTGTT+AGG + chr3_4:64938392-64938411 Msa0514260:CDS 35.0%
GAATACATACCCAACTGTTA+GGG + chr3_4:64938393-64938412 Msa0514260:CDS 35.0%
AATACATACCCAACTGTTAG+GGG + chr3_4:64938394-64938413 Msa0514260:CDS 35.0%
ATAAAACATACCTGGGGAAT+GGG - chr3_4:64938496-64938515 None:intergenic 35.0%
TGCACCTATTTATTTAGGGA+CGG + chr3_4:64938579-64938598 Msa0514260:intron 35.0%
ATAATATGTAAACCTGACGG+TGG - chr3_4:64939153-64939172 None:intergenic 35.0%
! CACTAGTCTAAATGAGACAA+TGG + chr3_4:64939224-64939243 Msa0514260:intron 35.0%
CTAGTCTAAATGAGACAATG+GGG + chr3_4:64939226-64939245 Msa0514260:intron 35.0%
GATCATAGGATTTCACACAA+TGG + chr3_4:64939291-64939310 Msa0514260:intron 35.0%
TTGCCAATATGTGCTGTAAA+TGG + chr3_4:64939339-64939358 Msa0514260:intron 35.0%
!! CCTCCTCTAGTCTTTTTATA+AGG - chr3_4:64939463-64939482 None:intergenic 35.0%
CCTTATAAAAAGACTAGAGG+AGG + chr3_4:64939460-64939479 Msa0514260:intron 35.0%
TATAAAAAGACTAGAGGAGG+AGG + chr3_4:64939463-64939482 Msa0514260:intron 35.0%
! TCACTGTCTCGTCTTTTAAA+AGG - chr3_4:64939612-64939631 None:intergenic 35.0%
TTCAAGGACTTCATGGAATT+TGG - chr3_4:64939781-64939800 None:intergenic 35.0%
! AAATTTTATCATCACCCACC+GGG - chr3_4:64940231-64940250 None:intergenic 35.0%
! ATTGTGTTGGTGTTCTTCTA+CGG - chr3_4:64940261-64940280 None:intergenic 35.0%
AGAAGAACACCAACACAATA+AGG + chr3_4:64940262-64940281 Msa0514260:intron 35.0%
!! GATTTCCTTCGAGTTGTTAT+AGG + chr3_4:64940409-64940428 Msa0514260:intron 35.0%
! CTTTTCCTATAACAACTCGA+AGG - chr3_4:64940417-64940436 None:intergenic 35.0%
GGTACATCTTCACTTACATT+TGG + chr3_4:64940471-64940490 Msa0514260:intron 35.0%
ACATCTTCACTTACATTTGG+TGG + chr3_4:64940474-64940493 Msa0514260:intron 35.0%
ATATCAATGTATATTCGCCC+AGG - chr3_4:64940700-64940719 None:intergenic 35.0%
CTGTATATAATGCTATGAGG+AGG + chr3_4:64940749-64940768 Msa0514260:CDS 35.0%
AGAAAAAAACAATGGCGTGC+AGG + chr3_4:64937779-64937798 Msa0514260:exon 40.0%
TTGAATCCGAATAAGAGAGG+AGG + chr3_4:64937874-64937893 Msa0514260:CDS 40.0%
CGAAAACCTCCTCTCTTATT+CGG - chr3_4:64937883-64937902 None:intergenic 40.0%
ATTCCATTACCACGGTGAAA+GGG - chr3_4:64937928-64937947 None:intergenic 40.0%
AATTCCATTACCACGGTGAA+AGG - chr3_4:64937929-64937948 None:intergenic 40.0%
AACGGAGAATTCCATTACCA+CGG - chr3_4:64937936-64937955 None:intergenic 40.0%
! TCGTCTTTTCACGATGATCA+AGG + chr3_4:64937979-64937998 Msa0514260:CDS 40.0%
! AGGTATCTAAGACAGAAGGA+AGG + chr3_4:64938117-64938136 Msa0514260:CDS 40.0%
! TCTAAGACAGAAGGAAGGAT+AGG + chr3_4:64938122-64938141 Msa0514260:CDS 40.0%
ATACATACCCAACTGTTAGG+GGG + chr3_4:64938395-64938414 Msa0514260:CDS 40.0%
CATAAAACATACCTGGGGAA+TGG - chr3_4:64938497-64938516 None:intergenic 40.0%
GCACCTATTTATTTAGGGAC+GGG + chr3_4:64938580-64938599 Msa0514260:intron 40.0%
CACCTATTTATTTAGGGACG+GGG + chr3_4:64938581-64938600 Msa0514260:intron 40.0%
AACCCCGTCCCTAAATAAAT+AGG - chr3_4:64938586-64938605 None:intergenic 40.0%
ATTGACGTGATGCTTATTGC+TGG + chr3_4:64938826-64938845 Msa0514260:intron 40.0%
! TGACTTTAGAAGTCCAGTGT+AGG + chr3_4:64938970-64938989 Msa0514260:intron 40.0%
ATGCAATCTTAGAACCACCA+CGG - chr3_4:64939024-64939043 None:intergenic 40.0%
! GCTTGACATAGTTTGTGGTT+TGG - chr3_4:64939131-64939150 None:intergenic 40.0%
TTATGAAGGACGCTGATCAT+AGG + chr3_4:64939277-64939296 Msa0514260:intron 40.0%
AACCATGAGTAGCTGCTTAA+AGG - chr3_4:64939321-64939340 None:intergenic 40.0%
!! GAGACTTCTAGAAGGGATTT+TGG - chr3_4:64939368-64939387 None:intergenic 40.0%
TTTGCTGCATCCCTTGAATA+TGG - chr3_4:64939419-64939438 None:intergenic 40.0%
TAATGGAAAGATCAGTCACC+CGG - chr3_4:64939499-64939518 None:intergenic 40.0%
! GTGTAGGTAGGAGTACATAA+TGG - chr3_4:64939516-64939535 None:intergenic 40.0%
AAAAGGTCTAACTTGGGGAT+GGG - chr3_4:64939595-64939614 None:intergenic 40.0%
TAAAAGGTCTAACTTGGGGA+TGG - chr3_4:64939596-64939615 None:intergenic 40.0%
AAGTGGAGAAGCAAAAGATG+AGG - chr3_4:64939714-64939733 None:intergenic 40.0%
AAGGACTTCATGGAATTTGG+AGG - chr3_4:64939778-64939797 None:intergenic 40.0%
CGGTGCAAAATTCCAAACAT+GGG - chr3_4:64940110-64940129 None:intergenic 40.0%
TCGGTGCAAAATTCCAAACA+TGG - chr3_4:64940111-64940130 None:intergenic 40.0%
!! GTTTGGAATTTTGCACCGAA+TGG + chr3_4:64940112-64940131 Msa0514260:intron 40.0%
! GGTAAAAAGCACATTCCTGT+TGG - chr3_4:64940138-64940157 None:intergenic 40.0%
ACGTATCGTAACAGTTGTCA+AGG + chr3_4:64940176-64940195 Msa0514260:intron 40.0%
TATCGTAACAGTTGTCAAGG+TGG + chr3_4:64940179-64940198 Msa0514260:intron 40.0%
AATTCATAACTTAGTCCCGG+TGG + chr3_4:64940213-64940232 Msa0514260:intron 40.0%
ATTCATAACTTAGTCCCGGT+GGG + chr3_4:64940214-64940233 Msa0514260:intron 40.0%
GAAGAGGATAACTTAGAGAG+AGG - chr3_4:64940655-64940674 None:intergenic 40.0%
! TTTTCGCTGCAGAACCGTTA+AGG + chr3_4:64937897-64937916 Msa0514260:CDS 45.0%
GTGTATCGTTACGAGAGCAA+CGG - chr3_4:64937954-64937973 None:intergenic 45.0%
TCATCGTGAAAAGACGACGA+CGG - chr3_4:64937976-64937995 None:intergenic 45.0%
TTCAACACAGCTTCTTGAGG+AGG - chr3_4:64938006-64938025 None:intergenic 45.0%
TCCTCAAGAAGCTGTGTTGA+AGG + chr3_4:64938005-64938024 Msa0514260:CDS 45.0%
!! GCAGAGGTATCTAAGACAGA+AGG + chr3_4:64938113-64938132 Msa0514260:intron 45.0%
GGTTATTGGAGGAACTGTCA+CGG + chr3_4:64938160-64938179 Msa0514260:CDS 45.0%
GATCAAATTGCAGCCTACAC+TGG - chr3_4:64938986-64939005 None:intergenic 45.0%
CTCAGGACCTTGCATTATGA+AGG + chr3_4:64939263-64939282 Msa0514260:intron 45.0%
TCAGCGTCCTTCATAATGCA+AGG - chr3_4:64939273-64939292 None:intergenic 45.0%
GACCTTTAAGCAGCTACTCA+TGG + chr3_4:64939316-64939335 Msa0514260:intron 45.0%
AAAGACTAGAGGAGGAGGTT+TGG + chr3_4:64939468-64939487 Msa0514260:intron 45.0%
AATGGAAAGATCAGTCACCC+GGG - chr3_4:64939498-64939517 None:intergenic 45.0%
GGAGAAGGCTAAAGACTGTT+GGG - chr3_4:64939574-64939593 None:intergenic 45.0%
TTCTCCACTTGCTCTCTAGA+TGG + chr3_4:64939724-64939743 Msa0514260:intron 45.0%
ATGCTCGTACACACATTGAG+AGG + chr3_4:64939857-64939876 Msa0514260:intron 45.0%
CAAACATGGGACTCAGTGAA+AGG - chr3_4:64940097-64940116 None:intergenic 45.0%
CTTTCACTGAGTCCCATGTT+TGG + chr3_4:64940095-64940114 Msa0514260:intron 45.0%
TCGAAGGAAATCACAGTGCA+TGG - chr3_4:64940401-64940420 None:intergenic 45.0%
! TGAAGCACAAGGTATCAGCA+AGG + chr3_4:64940545-64940564 Msa0514260:CDS 45.0%
! GAAGCACAAGGTATCAGCAA+GGG + chr3_4:64940546-64940565 Msa0514260:CDS 45.0%
! AAGCACAAGGTATCAGCAAG+GGG + chr3_4:64940547-64940566 Msa0514260:CDS 45.0%
!! TTGGACTGGCCCAATGTTTA+CGG - chr3_4:64940584-64940603 None:intergenic 45.0%
TTGACATGCCTGCTTTCTAG+TGG + chr3_4:64940836-64940855 Msa0514260:three_prime_UTR 45.0%
! ATGCCTGCTTTCTAGTGGTT+AGG + chr3_4:64940841-64940860 Msa0514260:three_prime_UTR 45.0%
ATCTACGGCTCAGTGATTCA+GGG - chr3_4:64941037-64941056 None:intergenic 45.0%
!! TATAATCATAAAATAATTAT+TGG - chr3_4:64940973-64940992 None:intergenic 5.0%
GCTTCGTTCAGCGATGATTG+TGG + chr3_4:64937807-64937826 Msa0514260:CDS 50.0%
GTGAAAGGGACGAGCCTTAA+CGG - chr3_4:64937914-64937933 None:intergenic 50.0%
GCCTTCAACACAGCTTCTTG+AGG - chr3_4:64938009-64938028 None:intergenic 50.0%
GCTGTGTTGAAGGCCATTTC+AGG + chr3_4:64938015-64938034 Msa0514260:CDS 50.0%
CAGTGAACCCCCTAACAGTT+GGG - chr3_4:64938405-64938424 None:intergenic 50.0%
GTTAGGGGGTTCACTGCAAT+AGG + chr3_4:64938409-64938428 Msa0514260:CDS 50.0%
GGGTTCACTGCAATAGGAAC+CGG + chr3_4:64938415-64938434 Msa0514260:CDS 50.0%
TTCACTGCAATAGGAACCGG+TGG + chr3_4:64938418-64938437 Msa0514260:CDS 50.0%
TCACTGCAATAGGAACCGGT+GGG + chr3_4:64938419-64938438 Msa0514260:CDS 50.0%
GGATGACTTCGTGCAAGCTA+TGG + chr3_4:64938441-64938460 Msa0514260:CDS 50.0%
CGGTGGCTTGACATAGTTTG+TGG - chr3_4:64939136-64939155 None:intergenic 50.0%
AACTATGTCAAGCCACCGTC+AGG + chr3_4:64939138-64939157 Msa0514260:intron 50.0%
! GGGACTAGTAATCACGACTC+AGG + chr3_4:64939246-64939265 Msa0514260:intron 50.0%
TCAAGGGATGCAGCAAAGTC+TGG + chr3_4:64939422-64939441 Msa0514260:intron 50.0%
AAGACTGTTGGGAGAGTCCA+GGG - chr3_4:64939563-64939582 None:intergenic 50.0%
AAAGACTGTTGGGAGAGTCC+AGG - chr3_4:64939564-64939583 None:intergenic 50.0%
GGGAGAAGGCTAAAGACTGT+TGG - chr3_4:64939575-64939594 None:intergenic 50.0%
TCTAACTTGGGGATGGGAGA+AGG - chr3_4:64939589-64939608 None:intergenic 50.0%
GAGGTTAGAATCAGCTCCAC+CGG - chr3_4:64939695-64939714 None:intergenic 50.0%
GGTTCCATCTAGAGAGCAAG+TGG - chr3_4:64939731-64939750 None:intergenic 50.0%
! CATGGAATTTGGAGGCACAC+TGG - chr3_4:64939770-64939789 None:intergenic 50.0%
TGTGTACGAGCATGCGTAAG+CGG - chr3_4:64939850-64939869 None:intergenic 50.0%
! TTTTGCACCGAATGGCCAAC+AGG + chr3_4:64940120-64940139 Msa0514260:intron 50.0%
GCACATTCCTGTTGGCCATT+CGG - chr3_4:64940130-64940149 None:intergenic 50.0%
CGTACTCTTCTGCACAAAGC+AGG - chr3_4:64940159-64940178 None:intergenic 50.0%
TCGCTGGAAACAACTTGGAC+TGG - chr3_4:64940598-64940617 None:intergenic 50.0%
CCTGTTCGCTGGAAACAACT+TGG - chr3_4:64940603-64940622 None:intergenic 50.0%
! CCAAGTTGTTTCCAGCGAAC+AGG + chr3_4:64940600-64940619 Msa0514260:CDS 50.0%
AGGCAGAAATACCTGTTCGC+TGG - chr3_4:64940614-64940633 None:intergenic 50.0%
ATGCTATGAGGAGGGATGAC+AGG + chr3_4:64940758-64940777 Msa0514260:CDS 50.0%
CAGCCTAACCACTAGAAAGC+AGG - chr3_4:64940847-64940866 None:intergenic 50.0%
CATCTACGGCTCAGTGATTC+AGG - chr3_4:64941038-64941057 None:intergenic 50.0%
CGTCCCTTTCACCGTGGTAA+TGG + chr3_4:64937922-64937941 Msa0514260:CDS 55.0%
GCAGTGAACCCCCTAACAGT+TGG - chr3_4:64938406-64938425 None:intergenic 55.0%
CACTGCAATAGGAACCGGTG+GGG + chr3_4:64938420-64938439 Msa0514260:CDS 55.0%
TTGCACGAAGTCATCCCCAC+CGG - chr3_4:64938437-64938456 None:intergenic 55.0%
AATCCAACAGCCCATTCCCC+AGG + chr3_4:64938483-64938502 Msa0514260:CDS 55.0%
!! ATACCTGGGGAATGGGCTGT+TGG - chr3_4:64938489-64938508 None:intergenic 55.0%
TCTGCGTAGTTTAGCTGCCG+TGG + chr3_4:64939004-64939023 Msa0514260:intron 55.0%
!! AGGAGGAGGTTTGGTTTGCC+CGG + chr3_4:64939477-64939496 Msa0514260:intron 55.0%
CTTTGGTTGCTGGTGCGTGT+AGG - chr3_4:64939532-64939551 None:intergenic 55.0%
CACGCACCAGCAACCAAAGT+CGG + chr3_4:64939533-64939552 Msa0514260:intron 55.0%
ACAGAACACTCCCGAGTCGT+CGG + chr3_4:64939649-64939668 Msa0514260:intron 55.0%
ATGGACTCTTCCGACGACTC+GGG - chr3_4:64939662-64939681 None:intergenic 55.0%
CATGGACTCTTCCGACGACT+CGG - chr3_4:64939663-64939682 None:intergenic 55.0%
AGAGTCCATGTCCGTCTAGC+CGG + chr3_4:64939673-64939692 Msa0514260:intron 55.0%
! AATCAGCTCCACCGGCTAGA+CGG - chr3_4:64939687-64939706 None:intergenic 55.0%
TGGAACCTTCGTAGAGAGCC+TGG + chr3_4:64939744-64939763 Msa0514260:intron 55.0%
! AATTTGGAGGCACACTGGCC+AGG - chr3_4:64939765-64939784 None:intergenic 55.0%
ATGCGTAAGCGGGCATGTAC+AGG - chr3_4:64939839-64939858 None:intergenic 55.0%
GTGTACGAGCATGCGTAAGC+GGG - chr3_4:64939849-64939868 None:intergenic 55.0%
! ACAGGGGAGTGTGAAGCACA+AGG + chr3_4:64940534-64940553 Msa0514260:intron 55.0%
AAGGCTCGTCCCTTTCACCG+TGG + chr3_4:64937916-64937935 Msa0514260:CDS 60.0%
GCGTAGTTTAGCTGCCGTGG+TGG + chr3_4:64939007-64939026 Msa0514260:intron 60.0%
!! GGAGGAGGTTTGGTTTGCCC+GGG + chr3_4:64939478-64939497 Msa0514260:intron 60.0%
GGTTGCTGGTGCGTGTAGGT+AGG - chr3_4:64939528-64939547 None:intergenic 60.0%
ACTGTTGGGAGAGTCCAGGG+CGG - chr3_4:64939560-64939579 None:intergenic 60.0%
ACTGGCCAGGCTCTCTACGA+AGG - chr3_4:64939752-64939771 None:intergenic 60.0%
GGCGGTCCGACTTTGGTTGC+TGG - chr3_4:64939542-64939561 None:intergenic 65.0%
CAACCAAAGTCGGACCGCCC+TGG + chr3_4:64939543-64939562 Msa0514260:intron 65.0%
AGTCCAGGGCGGTCCGACTT+TGG - chr3_4:64939549-64939568 None:intergenic 65.0%
GTCCATGTCCGTCTAGCCGG+TGG + chr3_4:64939676-64939695 Msa0514260:intron 65.0%
! CTCCACCGGCTAGACGGACA+TGG - chr3_4:64939681-64939700 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64937700 64941122 64937700 ID=Msa0514260;Name=Msa0514260
chr3_4 mRNA 64937700 64941122 64937700 ID=Msa0514260-mRNA-1;Parent=Msa0514260;Name=Msa0514260-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|1|1|1|1|1|5|324|201
chr3_4 exon 64937700 64938036 64937700 ID=Msa0514260-mRNA-1:exon:16394;Parent=Msa0514260-mRNA-1
chr3_4 exon 64938117 64938220 64938117 ID=Msa0514260-mRNA-1:exon:16395;Parent=Msa0514260-mRNA-1
chr3_4 exon 64938391 64938504 64938391 ID=Msa0514260-mRNA-1:exon:16396;Parent=Msa0514260-mRNA-1
chr3_4 exon 64940538 64940621 64940538 ID=Msa0514260-mRNA-1:exon:16397;Parent=Msa0514260-mRNA-1
chr3_4 exon 64940742 64941122 64940742 ID=Msa0514260-mRNA-1:exon:16398;Parent=Msa0514260-mRNA-1
chr3_4 five_prime_UTR 64937700 64937789 64937700 ID=Msa0514260-mRNA-1:five_prime_utr;Parent=Msa0514260-mRNA-1
chr3_4 CDS 64937790 64938036 64937790 ID=Msa0514260-mRNA-1:cds;Parent=Msa0514260-mRNA-1
chr3_4 CDS 64938117 64938220 64938117 ID=Msa0514260-mRNA-1:cds;Parent=Msa0514260-mRNA-1
chr3_4 CDS 64938391 64938504 64938391 ID=Msa0514260-mRNA-1:cds;Parent=Msa0514260-mRNA-1
chr3_4 CDS 64940538 64940621 64940538 ID=Msa0514260-mRNA-1:cds;Parent=Msa0514260-mRNA-1
chr3_4 CDS 64940742 64940798 64940742 ID=Msa0514260-mRNA-1:cds;Parent=Msa0514260-mRNA-1
chr3_4 three_prime_UTR 64940799 64941122 64940799 ID=Msa0514260-mRNA-1:three_prime_utr;Parent=Msa0514260-mRNA-1
Gene Sequence

>Msa0514260

ATGGCGTGCAGGAGCATGCTTCGTTCAGCGATGATTGTGGAACCATTGCAATTCCAATTCCAATTCAAACCTTTACTTTTTAATTTGAATCCGAATAAGAGAGGAGGTTTTCGCTGCAGAACCGTTAAGGCTCGTCCCTTTCACCGTGGTAATGGAATTCTCCGTTGCTCTCGTAACGATACACCGTCGTCGTCTTTTCACGATGATCAAGGTCCTCCTCAAGAAGCTGTGTTGAAGGCCATTTCAGAGGTATCTAAGACAGAAGGAAGGATAGGACAAACTACGAATATGGTTATTGGAGGAACTGTCACGGATGATTCTACTAATGAATGGGTTGCTTTAGACAAAAAGGTGAATACATACCCAACTGTTAGGGGGTTCACTGCAATAGGAACCGGTGGGGATGACTTCGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTAATCCAACAGCCCATTCCCCAGGGGAGTGTGAAGCACAAGGTATCAGCAAGGGGCAAATATGTGTCCGTAAACATTGGGCCAGTCCAAGTTGTTTCCAGCGAACAGGTCCAAGCTGTATATAATGCTATGAGGAGGGATGACAGGATGAAATACTTTTTATAG

Protein sequence

>Msa0514260

MACRSMLRSAMIVEPLQFQFQFKPLLFNLNPNKRGGFRCRTVKARPFHRGNGILRCSRNDTPSSSFHDDQGPPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEWVALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSVNIGPVQVVSSEQVQAVYNAMRRDDRMKYFL*