Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101900 | XP_003589174.2 | 81.455 | 701 | 56 | 9 | 1 | 627 | 1 | 701 | 0.0 | 1081 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101900 | sp|P85107|TGS1_RAT | 45.320 | 203 | 86 | 4 | 443 | 624 | 638 | 836 | 1.21e-45 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101900 | A0A396JQF6 | 81.455 | 701 | 56 | 9 | 1 | 627 | 1 | 701 | 0.0 | 1081 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026710 | Msa0101900 | 0.876916 | 9.538620e-69 | -8.615850e-47 |
| Msa0027230 | Msa0101900 | 0.806271 | 8.921308e-50 | -8.615850e-47 |
| Msa0061080 | Msa0101900 | 0.802681 | 4.998317e-49 | -8.615850e-47 |
| Msa0063530 | Msa0101900 | 0.809169 | 2.161222e-50 | -8.615850e-47 |
| Msa0075220 | Msa0101900 | 0.801629 | 8.226709e-49 | -8.615850e-47 |
| Msa0101900 | Msa0105620 | 0.802427 | 5.640004e-49 | -8.615850e-47 |
| Msa0101900 | Msa0159180 | 0.807852 | 4.128880e-50 | -8.615850e-47 |
| Msa0101900 | Msa0171540 | 0.802566 | 5.278663e-49 | -8.615850e-47 |
| Msa0101900 | Msa0180500 | 0.802676 | 5.011057e-49 | -8.615850e-47 |
| Msa0101900 | Msa0241470 | 0.800622 | 1.321856e-48 | -8.615850e-47 |
| Msa0101900 | Msa0279220 | 0.805786 | 1.128353e-49 | -8.615850e-47 |
| Msa0101900 | Msa0336290 | 0.808485 | 3.026577e-50 | -8.615850e-47 |
| Msa0101900 | Msa0450400 | -0.808065 | 3.718359e-50 | -8.615850e-47 |
| Msa0101900 | Msa0450480 | 0.806798 | 6.903935e-50 | -8.615850e-47 |
| Msa0101900 | Msa0542290 | 0.806526 | 7.881611e-50 | -8.615850e-47 |
| Msa0101900 | Msa0556060 | 0.816250 | 6.093732e-52 | -8.615850e-47 |
| Msa0101900 | Msa0572840 | 0.801429 | 9.042228e-49 | -8.615850e-47 |
| Msa0101900 | Msa0607910 | 0.800276 | 1.555246e-48 | -8.615850e-47 |
| Msa0101900 | Msa0615490 | 0.850259 | 1.905892e-60 | -8.615850e-47 |
| Msa0101900 | Msa0698540 | 0.844391 | 7.781511e-59 | -8.615850e-47 |
| Msa0101900 | Msa0999970 | 0.801318 | 9.530194e-49 | -8.615850e-47 |
| Msa0101900 | Msa1102220 | 0.802886 | 4.533585e-49 | -8.615850e-47 |
| Msa0101900 | Msa1106700 | 0.830637 | 2.625855e-55 | -8.615850e-47 |
| Msa0101900 | Msa1156160 | 0.801648 | 8.152670e-49 | -8.615850e-47 |
| Msa0101900 | Msa1180500 | 0.810160 | 1.323354e-50 | -8.615850e-47 |
| Msa0101900 | Msa1231840 | 0.800811 | 1.209737e-48 | -8.615850e-47 |
| Msa0101900 | Msa1254730 | 0.802022 | 6.832285e-49 | -8.615850e-47 |
| Msa0101900 | Msa1262720 | 0.808815 | 2.573382e-50 | -8.615850e-47 |
| Msa0101900 | Msa1274560 | 0.822032 | 2.942870e-53 | -8.615850e-47 |
| Msa0101900 | Msa1312520 | 0.816611 | 5.057952e-52 | -8.615850e-47 |
| Msa0101900 | Msa1443850 | 0.801944 | 7.088213e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101900 | MtrunA17_Chr1g0153291 | 81.455 | 701 | 56 | 9 | 1 | 627 | 1 | 701 | 0.0 | 1081 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101900 | AT1G45231.2 | 43.182 | 396 | 177 | 7 | 246 | 624 | 160 | 524 | 4.35e-95 | 303 |
| Msa0101900 | AT1G30545.2 | 50.000 | 200 | 84 | 2 | 443 | 626 | 31 | 230 | 1.16e-63 | 210 |
| Msa0101900 | AT1G30550.1 | 49.749 | 199 | 84 | 2 | 443 | 625 | 19 | 217 | 4.39e-63 | 208 |
| Msa0101900 | AT1G30550.2 | 49.749 | 199 | 84 | 2 | 443 | 625 | 37 | 235 | 1.85e-62 | 207 |
| Msa0101900 | AT1G30545.1 | 38.983 | 118 | 56 | 2 | 525 | 626 | 2 | 119 | 2.30e-23 | 96.3 |
Find 153 sgRNAs with CRISPR-Local
Find 523 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTCTCCCTCTTTCCTTTC+AGG | 0.117881 | 1_3:-8563687 | Msa0101900:CDS |
| ATACAGATTGTGAGACTATT+TGG | 0.181236 | 1_3:-8562022 | Msa0101900:intron |
| GTGGAGAAAATTCATTTAAA+TGG | 0.185649 | 1_3:-8556267 | Msa0101900:CDS |
| TCAATTGATTGTGGTGAATT+TGG | 0.197179 | 1_3:-8561903 | Msa0101900:CDS |
| TGGAGTCGCTGCTGGAAATT+TGG | 0.230378 | 1_3:-8561628 | Msa0101900:CDS |
| GTGTTATGGGATACTTTCTA+TGG | 0.231393 | 1_3:-8561870 | Msa0101900:CDS |
| TGTCACCAGCACCTGTTAAA+TGG | 0.276417 | 1_3:+8562114 | None:intergenic |
| CTACTCACCGTTGTGCAAAT+TGG | 0.278895 | 1_3:+8560571 | None:intergenic |
| GAGCAAACAAATGAATGAAT+TGG | 0.294987 | 1_3:-8563708 | Msa0101900:CDS |
| ATTGCACATGCCTCGGATAC+TGG | 0.299799 | 1_3:-8562152 | Msa0101900:CDS |
| TAAGATCAAAGTCACGGTTC+TGG | 0.303686 | 1_3:+8562177 | None:intergenic |
| TTGGAGATTGGATGGTGTTA+TGG | 0.306890 | 1_3:-8561884 | Msa0101900:CDS |
| AGAATCACTTCCCATGAGTT+TGG | 0.319721 | 1_3:-8561955 | Msa0101900:CDS |
| TGGTTGAAGTTGACATTTCT+TGG | 0.332160 | 1_3:+8557121 | None:intergenic |
| TCTTCAGCTAGTCTTTGTTC+TGG | 0.336169 | 1_3:+8556134 | None:intergenic |
| TCAGATTTACTATCCAATTC+AGG | 0.343225 | 1_3:+8561232 | None:intergenic |
| TCGTCTACCAAGGTTTCTTC+AGG | 0.344527 | 1_3:+8561693 | None:intergenic |
| TGTCTTCCTATCTCCACCTT+GGG | 0.368653 | 1_3:-8557927 | Msa0101900:CDS |
| TCATTTAGAGTTTCATCAAC+AGG | 0.375630 | 1_3:+8562437 | None:intergenic |
| TAGAAATGTGGACCAGTAAA+AGG | 0.376722 | 1_3:-8562506 | Msa0101900:CDS |
| ATTGTTGCAGAATAAGCTTC+AGG | 0.377435 | 1_3:+8560768 | None:intergenic |
| GGTAATTGATACGCCTGAAT+TGG | 0.379166 | 1_3:-8561245 | Msa0101900:CDS |
| TGGAGATTGGATGGTGTTAT+GGG | 0.383342 | 1_3:-8561883 | Msa0101900:CDS |
| TATACTATTAATTCTTTCCT+CGG | 0.394314 | 1_3:+8562223 | None:intergenic |
| AAGATCAAAGTCACGGTTCT+GGG | 0.395925 | 1_3:+8562178 | None:intergenic |
| ATTATCTTGTATATCAATGC+TGG | 0.397234 | 1_3:-8562357 | Msa0101900:CDS |
| GTCGCAACCTTGGCATAATC+TGG | 0.408300 | 1_3:+8557899 | None:intergenic |
| GCTGAGATTGGAGTCGCTGC+TGG | 0.424048 | 1_3:-8561636 | Msa0101900:CDS |
| GATCAAATTGACTTCATAGT+TGG | 0.427835 | 1_3:-8559270 | Msa0101900:CDS |
| AGCAAACAAATGAATGAATT+GGG | 0.428976 | 1_3:-8563707 | Msa0101900:CDS |
| AATACCTAACGACGTGATCC+AGG | 0.429384 | 1_3:+8561496 | None:intergenic |
| TCTGCTGGAAGCCATTTAAC+AGG | 0.439865 | 1_3:-8562125 | Msa0101900:CDS |
| TTGGTAGACGAGAACTTATC+AGG | 0.445848 | 1_3:-8561681 | Msa0101900:CDS |
| TGCTGCACTGGGTTTGCTAA+TGG | 0.446709 | 1_3:-8562251 | Msa0101900:CDS |
| ATTGTGGTGAATTTGGAGAT+TGG | 0.448835 | 1_3:-8561896 | Msa0101900:CDS |
| GACTGTTTCACCGGCGCTGG+TGG | 0.456267 | 1_3:-8560603 | Msa0101900:CDS |
| TCTACATGGGACCCACCCTC+AGG | 0.459782 | 1_3:-8561813 | Msa0101900:CDS |
| GTTGCATATGACAGAGTTGA+TGG | 0.460248 | 1_3:-8561927 | Msa0101900:CDS |
| AGTGATTCTGATTCGTTAGC+TGG | 0.461287 | 1_3:+8561969 | None:intergenic |
| AAATGTCAACTTCAACCAAT+TGG | 0.461325 | 1_3:-8557116 | Msa0101900:CDS |
| GGGATGGAGTATCTAGCATT+TGG | 0.461901 | 1_3:-8561792 | Msa0101900:intron |
| GAAGAGTATTCAGCTGAGAT+TGG | 0.463111 | 1_3:-8561648 | Msa0101900:CDS |
| GATAATTCAACATGCTGCAC+TGG | 0.465684 | 1_3:-8562263 | Msa0101900:CDS |
| TCGGATACTGGAATCTCTGC+TGG | 0.481604 | 1_3:-8562140 | Msa0101900:CDS |
| TTGTTCTTAGAGAGTTGCTC+AGG | 0.483549 | 1_3:+8556071 | None:intergenic |
| TTCTTTGCCTGAAAGGAAAG+AGG | 0.484021 | 1_3:+8563680 | None:intergenic |
| TGATAATGTGCAATAATCTC+TGG | 0.484400 | 1_3:+8560657 | None:intergenic |
| ATACCCTGGATCACGTCGTT+AGG | 0.486600 | 1_3:-8561500 | Msa0101900:intron |
| TTATTCTCTAGATTTGATGA+TGG | 0.486790 | 1_3:-8560717 | Msa0101900:CDS |
| AGTTGGTGACTTCTTCGTCT+TGG | 0.487348 | 1_3:-8559253 | Msa0101900:CDS |
| ACAGTAATTGACTGTTTCAC+CGG | 0.491412 | 1_3:-8560612 | Msa0101900:CDS |
| TGCAACCCCTTCCAAACTCA+TGG | 0.493145 | 1_3:+8561944 | None:intergenic |
| GTCCACCCCAAGGTGGAGAT+AGG | 0.493310 | 1_3:+8557921 | None:intergenic |
| TTTGCTCAATTCCAAATCCT+CGG | 0.493464 | 1_3:+8563724 | None:intergenic |
| CAGCTAGTCTTTGTTCTGGA+AGG | 0.495385 | 1_3:+8556138 | None:intergenic |
| TATTTCAGTTGTACATGAGA+TGG | 0.498573 | 1_3:-8556222 | Msa0101900:exon |
| TTCCTTTCAGGCAAAGAATG+AGG | 0.501644 | 1_3:-8563675 | Msa0101900:intron |
| TACCTCATTCTTTGCCTGAA+AGG | 0.504941 | 1_3:+8563673 | None:intergenic |
| TACTCTGTTCAGTGTTGCTA+AGG | 0.505931 | 1_3:-8557173 | Msa0101900:CDS |
| CATCTGAATGATGAAGAGAT+TGG | 0.506548 | 1_3:+8561577 | None:intergenic |
| ATTGACTGTTTCACCGGCGC+TGG | 0.506856 | 1_3:-8560606 | Msa0101900:CDS |
| GAAGAATGCAGAGGTTACTT+AGG | 0.507980 | 1_3:+8555843 | None:intergenic |
| ATAGAGATAACTCTGCCAAT+TGG | 0.508750 | 1_3:+8557101 | None:intergenic |
| CTGTCTTCCTATCTCCACCT+TGG | 0.509970 | 1_3:-8557928 | Msa0101900:CDS |
| TCTTAAAATTGCACATGCCT+CGG | 0.512307 | 1_3:-8562159 | Msa0101900:CDS |
| TGAAGTTGACATTTCTTGGA+AGG | 0.517744 | 1_3:+8557125 | None:intergenic |
| CACTTCCCATGAGTTTGGAA+GGG | 0.519103 | 1_3:-8561950 | Msa0101900:CDS |
| CTAGCATAATCAATCTTCAA+TGG | 0.520724 | 1_3:+8559321 | None:intergenic |
| TGGAAGGAACATGACAACTC+TGG | 0.528426 | 1_3:+8557141 | None:intergenic |
| TTATCTTGTATATCAATGCT+GGG | 0.528772 | 1_3:-8562356 | Msa0101900:CDS |
| TTGCTCAATTCCAAATCCTC+GGG | 0.531412 | 1_3:+8563725 | None:intergenic |
| GCTGCAAGTACGTGGCTGCT+TGG | 0.531513 | 1_3:+8562463 | None:intergenic |
| TTCCTATCTCCACCTTGGGG+TGG | 0.532270 | 1_3:-8557923 | Msa0101900:CDS |
| AGATACTCCATCCCTGAGGG+TGG | 0.532294 | 1_3:+8561801 | None:intergenic |
| TCACTTCCCATGAGTTTGGA+AGG | 0.534280 | 1_3:-8561951 | Msa0101900:CDS |
| ACTTCCCATGAGTTTGGAAG+GGG | 0.538055 | 1_3:-8561949 | Msa0101900:CDS |
| CACAGTAGGATGATTCACTT+TGG | 0.539774 | 1_3:+8562333 | None:intergenic |
| TTCAGTTGTACATGAGATGG+AGG | 0.540091 | 1_3:-8556219 | Msa0101900:exon |
| GGAAGCCATTTAACAGGTGC+TGG | 0.541054 | 1_3:-8562119 | Msa0101900:CDS |
| TCAAAACAGACACTTCTACA+TGG | 0.541812 | 1_3:-8561827 | Msa0101900:CDS |
| ACTGTTTCACCGGCGCTGGT+GGG | 0.542352 | 1_3:-8560602 | Msa0101900:CDS |
| TGGTGAATTTGGAGATTGGA+TGG | 0.548165 | 1_3:-8561892 | Msa0101900:CDS |
| GACATGGCTCAATCTGTCCC+TGG | 0.553310 | 1_3:-8562293 | Msa0101900:CDS |
| AATAGCGGCGCCTTCATAGT+CGG | 0.558541 | 1_3:+8564083 | None:intergenic |
| TATCAAGCATCACGTTGTGC+AGG | 0.561730 | 1_3:-8560639 | Msa0101900:CDS |
| ATAATTCAACATGCTGCACT+GGG | 0.561985 | 1_3:-8562262 | Msa0101900:CDS |
| CAAACAACCTGAAGAAACCT+TGG | 0.563559 | 1_3:-8561700 | Msa0101900:CDS |
| CATTGAAGATTGATTATGCT+AGG | 0.564121 | 1_3:-8559320 | Msa0101900:CDS |
| GCTCAATCTGTCCCTGGTGA+AGG | 0.564856 | 1_3:-8562287 | Msa0101900:CDS |
| ACGACGATGGTGCTGCCACT+TGG | 0.565157 | 1_3:-8561998 | Msa0101900:CDS |
| GGTGCTGGTGACAAGGTTTG+TGG | 0.565223 | 1_3:-8562104 | Msa0101900:CDS |
| TTTAACAGGTGCTGGTGACA+AGG | 0.566075 | 1_3:-8562111 | Msa0101900:CDS |
| GATGGCATTCCCACCAGCGC+CGG | 0.573122 | 1_3:+8560593 | None:intergenic |
| CTCTATCTGCCTCTCCACCA+TGG | 0.573558 | 1_3:-8557084 | Msa0101900:CDS |
| GGCGCCGCTATTCAATCTCT+CGG | 0.575015 | 1_3:-8564072 | Msa0101900:CDS |
| GTGCTGGTGACAAGGTTTGT+GGG | 0.579936 | 1_3:-8562103 | Msa0101900:CDS |
| CATTTAGAGTTTCATCAACA+GGG | 0.579943 | 1_3:+8562438 | None:intergenic |
| CTGTTCTGTATCAAATACCC+TGG | 0.582745 | 1_3:-8561514 | Msa0101900:CDS |
| TGCTACAAGTGAATCAAGCA+AGG | 0.583679 | 1_3:-8556171 | Msa0101900:three_prime_UTR |
| GTTGAATTATCTCCTTCACC+AGG | 0.585632 | 1_3:+8562275 | None:intergenic |
| TCTTTGCCTGAAAGGAAAGA+GGG | 0.587850 | 1_3:+8563681 | None:intergenic |
| ATGGGACCCACCCTCAGGGA+TGG | 0.588910 | 1_3:-8561808 | Msa0101900:CDS |
| CAAAACAGACACTTCTACAT+GGG | 0.589849 | 1_3:-8561826 | Msa0101900:CDS |
| GATACTCCATCCCTGAGGGT+GGG | 0.590428 | 1_3:+8561802 | None:intergenic |
| CTCTAGCGACCATGGTGGAG+AGG | 0.591857 | 1_3:+8557075 | None:intergenic |
| CTCTCCACCATGGTCGCTAG+AGG | 0.592850 | 1_3:-8557074 | Msa0101900:intron |
| CAATCTTCAAGCTTCATCCA+TGG | 0.592952 | 1_3:+8556043 | None:intergenic |
| TGTTATGGGATACTTTCTAT+GGG | 0.593869 | 1_3:-8561869 | Msa0101900:CDS |
| GCATAATCTGGTCCACCCCA+AGG | 0.596449 | 1_3:+8557911 | None:intergenic |
| TCATACACCAACGGAAAACA+TGG | 0.596879 | 1_3:-8561266 | Msa0101900:CDS |
| CAAGCATCACGTTGTGCAGG+TGG | 0.596897 | 1_3:-8560636 | Msa0101900:CDS |
| GAAATTACCTCTAGCGACCA+TGG | 0.600107 | 1_3:+8557067 | None:intergenic |
| TCACCGTTGTGCAAATTGGA+TGG | 0.602384 | 1_3:+8560575 | None:intergenic |
| ATACCTAACGACGTGATCCA+GGG | 0.603439 | 1_3:+8561497 | None:intergenic |
| AAATGAAGTGAGTGCAGAGG+AGG | 0.606828 | 1_3:-8562420 | Msa0101900:CDS |
| GCTAGATACTCCATCCCTGA+GGG | 0.607652 | 1_3:+8561798 | None:intergenic |
| ATCACCGACTCCGACTATGA+AGG | 0.610202 | 1_3:-8564093 | Msa0101900:CDS |
| GCAACCCCTTCCAAACTCAT+GGG | 0.614097 | 1_3:+8561945 | None:intergenic |
| TAATGCTGCTATTTATCGAG+TGG | 0.614197 | 1_3:-8559295 | Msa0101900:CDS |
| CTACATGGGACCCACCCTCA+GGG | 0.614401 | 1_3:-8561812 | Msa0101900:CDS |
| TTAGTTAGAAGCTTGTGATG+AGG | 0.615096 | 1_3:+8555936 | None:intergenic |
| GTTTGCTAATGGTGTTTCCG+AGG | 0.615324 | 1_3:-8562240 | Msa0101900:CDS |
| TGATAAGTTCTCGTCTACCA+AGG | 0.615470 | 1_3:+8561683 | None:intergenic |
| TCAGTTGTACATGAGATGGA+GGG | 0.615577 | 1_3:-8556218 | Msa0101900:exon |
| CTTGAGAGAACTAGTTGCAA+CGG | 0.617983 | 1_3:-8561549 | Msa0101900:CDS |
| TGGTGCAGCGGAAGTTGACA+TGG | 0.618529 | 1_3:-8562309 | Msa0101900:intron |
| AAATTATATTATGAAACTGA+AGG | 0.620563 | 1_3:-8561157 | Msa0101900:intron |
| GGCGCCTTCATAGTCGGAGT+CGG | 0.622083 | 1_3:+8564089 | None:intergenic |
| GGTTACTTAGGACACAAGCT+AGG | 0.622269 | 1_3:+8555855 | None:intergenic |
| AGAAAGTGAAAAGAAAACAC+AGG | 0.628636 | 1_3:-8561186 | Msa0101900:CDS |
| TCTATCTTGTCATAGAAATG+TGG | 0.633490 | 1_3:-8562518 | Msa0101900:intron |
| GTCTTCCTATCTCCACCTTG+GGG | 0.634884 | 1_3:-8557926 | Msa0101900:CDS |
| AGCAGAGATTCCAGTATCCG+AGG | 0.634906 | 1_3:+8562142 | None:intergenic |
| TTGCATATGACAGAGTTGAT+GGG | 0.643851 | 1_3:-8561926 | Msa0101900:CDS |
| GGGTGGACCAGATTATGCCA+AGG | 0.644458 | 1_3:-8557906 | Msa0101900:intron |
| ATGTTACAGGTGCAGACATG+TGG | 0.644573 | 1_3:-8559361 | Msa0101900:intron |
| ACAGGGTTGCTGCAAGTACG+TGG | 0.644966 | 1_3:+8562455 | None:intergenic |
| GTTGATGGGTCAATTGATTG+TGG | 0.650295 | 1_3:-8561912 | Msa0101900:CDS |
| TCTAAATGAAGTGAGTGCAG+AGG | 0.654427 | 1_3:-8562423 | Msa0101900:CDS |
| AGTGAATCATCCTACTGTGA+TGG | 0.656530 | 1_3:-8562329 | Msa0101900:intron |
| TTGAATTATCTCCTTCACCA+GGG | 0.659466 | 1_3:+8562276 | None:intergenic |
| TTCCGCTGCACCATCACAGT+AGG | 0.666655 | 1_3:+8562319 | None:intergenic |
| ATGCAGTCAAGCAACATCAG+AGG | 0.667380 | 1_3:-8561293 | Msa0101900:CDS |
| TGCTAGATACTCCATCCCTG+AGG | 0.677604 | 1_3:+8561797 | None:intergenic |
| ATGCCATCCAATTTGCACAA+CGG | 0.679134 | 1_3:-8560578 | Msa0101900:intron |
| AGAGGTCGATCATACACCAA+CGG | 0.685453 | 1_3:-8561275 | Msa0101900:CDS |
| AAGTGAAAAGAAAACACAGG+CGG | 0.687466 | 1_3:-8561183 | Msa0101900:CDS |
| ACATGAAAAGAAGAATGCAG+AGG | 0.689551 | 1_3:+8555834 | None:intergenic |
| TAATCTGGTCCACCCCAAGG+TGG | 0.694203 | 1_3:+8557914 | None:intergenic |
| GTTAGCTGGCGACTGCCAAG+TGG | 0.706012 | 1_3:+8561983 | None:intergenic |
| GAGACTATTTGGAACGACGA+TGG | 0.720881 | 1_3:-8562011 | Msa0101900:CDS |
| ATTACCTCTAGCGACCATGG+TGG | 0.725531 | 1_3:+8557070 | None:intergenic |
| AGAACCGAGAGATTGAATAG+CGG | 0.727660 | 1_3:+8564068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTGTAGTTTT+TGG | - | chr1_3:8559879-8559898 | Msa0101900:intron | 10.0% |
| !!! | TATTTTGGATTTTTAAAAAT+AGG | - | chr1_3:8560697-8560716 | Msa0101900:CDS | 10.0% |
| !!! | TATATGAAACAATATTTTAT+TGG | - | chr1_3:8560969-8560988 | Msa0101900:intron | 10.0% |
| !!! | ATATGAAACAATATTTTATT+GGG | - | chr1_3:8560970-8560989 | Msa0101900:intron | 10.0% |
| !!! | AACTTATTATATGTTTTATA+TGG | - | chr1_3:8563523-8563542 | Msa0101900:intron | 10.0% |
| !!! | TGTTTTATATTTTTGTAGAT+TGG | - | chr1_3:8556116-8556135 | Msa0101900:three_prime_UTR | 15.0% |
| !!! | TACTTTTCTTTTTTAAACTA+CGG | - | chr1_3:8556728-8556747 | Msa0101900:intron | 15.0% |
| !! | TGTCTAAATTATTACTATAA+AGG | - | chr1_3:8556997-8557016 | Msa0101900:intron | 15.0% |
| !! | GTCTAAATTATTACTATAAA+GGG | - | chr1_3:8556998-8557017 | Msa0101900:intron | 15.0% |
| !! | TCTAAATTATTACTATAAAG+GGG | - | chr1_3:8556999-8557018 | Msa0101900:intron | 15.0% |
| !! | CTATTATAAAACTATAACTA+TGG | + | chr1_3:8557225-8557244 | None:intergenic | 15.0% |
| !! | AAATTATATTATGAAACTGA+AGG | - | chr1_3:8558725-8558744 | Msa0101900:intron | 15.0% |
| !! | AGACCAAAAAAATTAATATT+CGG | - | chr1_3:8559458-8559477 | Msa0101900:intron | 15.0% |
| !!! | TAACCGAATATTAATTTTTT+TGG | + | chr1_3:8559464-8559483 | None:intergenic | 15.0% |
| !! | AACTACAAAAAAAAATTACA+GGG | + | chr1_3:8559877-8559896 | None:intergenic | 15.0% |
| !! | AAACTACAAAAAAAAATTAC+AGG | + | chr1_3:8559878-8559897 | None:intergenic | 15.0% |
| !! | GATTTATATGAAATGAATAT+TGG | + | chr1_3:8560268-8560287 | None:intergenic | 15.0% |
| !!! | TGATTATTGATTCTTTTTTT+TGG | - | chr1_3:8560471-8560490 | Msa0101900:intron | 15.0% |
| !!! | TATGAAACAATATTTTATTG+GGG | - | chr1_3:8560971-8560990 | Msa0101900:intron | 15.0% |
| !!! | TTATTTCTCCTATTTATATA+TGG | + | chr1_3:8561179-8561198 | None:intergenic | 15.0% |
| !! | TTAAATTTAATTAGAAGAGT+GGG | + | chr1_3:8561806-8561825 | None:intergenic | 15.0% |
| !! | TTTAAATTTAATTAGAAGAG+TGG | + | chr1_3:8561807-8561826 | None:intergenic | 15.0% |
| !! | AATTAAATTTACTTGTACTT+TGG | - | chr1_3:8562311-8562330 | Msa0101900:intron | 15.0% |
| !! | ATTAAATTTACTTGTACTTT+GGG | - | chr1_3:8562312-8562331 | Msa0101900:intron | 15.0% |
| !! | ATGTAAACAAAAAATGTATT+TGG | - | chr1_3:8563195-8563214 | Msa0101900:intron | 15.0% |
| !! | TTCTCTGATTAATTAATGAA+AGG | - | chr1_3:8556059-8556078 | Msa0101900:three_prime_UTR | 20.0% |
| !!! | GATTAATTAATGAAAGGTTT+TGG | - | chr1_3:8556065-8556084 | Msa0101900:three_prime_UTR | 20.0% |
| !!! | AGTGTAATTTGTATAACTAT+AGG | + | chr1_3:8556235-8556254 | None:intergenic | 20.0% |
| !! | TTCTACTATATCATAATATC+AGG | + | chr1_3:8556263-8556282 | None:intergenic | 20.0% |
| !! | TTATGATATAGTAGAAAGTT+TGG | - | chr1_3:8556267-8556286 | Msa0101900:CDS | 20.0% |
| !! | CTAAATTATTACTATAAAGG+GGG | - | chr1_3:8557000-8557019 | Msa0101900:intron | 20.0% |
| !! | ATAACCTGAAAACAATTTAT+AGG | - | chr1_3:8557097-8557116 | Msa0101900:CDS | 20.0% |
| !! | TCTTATATATATAAAGAGCA+GGG | + | chr1_3:8557308-8557327 | None:intergenic | 20.0% |
| !! | ATCTTATATATATAAAGAGC+AGG | + | chr1_3:8557309-8557328 | None:intergenic | 20.0% |
| !! | TATACTATTAATTCTTTCCT+CGG | + | chr1_3:8557662-8557681 | None:intergenic | 20.0% |
| !!! | TGAGATCAATGTTTTTTTAT+TGG | - | chr1_3:8558750-8558769 | Msa0101900:intron | 20.0% |
| !!! | TAATGAATCTTTAAGTTAAC+TGG | - | chr1_3:8558819-8558838 | Msa0101900:intron | 20.0% |
| !!! | TGATAAATTCATCTTGTTTT+TGG | - | chr1_3:8559362-8559381 | Msa0101900:intron | 20.0% |
| !! | AGAAACAGTAAATATATTCT+TGG | - | chr1_3:8559539-8559558 | Msa0101900:intron | 20.0% |
| !! | GAAACAGTAAATATATTCTT+GGG | - | chr1_3:8559540-8559559 | Msa0101900:intron | 20.0% |
| !! | GTATACATCAATATTAAATC+CGG | + | chr1_3:8559725-8559744 | None:intergenic | 20.0% |
| !! | AATTAAATTTGCAAATTACC+AGG | + | chr1_3:8559795-8559814 | None:intergenic | 20.0% |
| !! | TGCAAATTTAATTCTCATAA+AGG | - | chr1_3:8559802-8559821 | Msa0101900:intron | 20.0% |
| !!! | TTCAAAAACAATATTTTGCA+GGG | + | chr1_3:8559906-8559925 | None:intergenic | 20.0% |
| !!! | TTTCAAAAACAATATTTTGC+AGG | + | chr1_3:8559907-8559926 | None:intergenic | 20.0% |
| !!! | CCAAAAACAAAATATTTTAC+AGG | + | chr1_3:8560007-8560026 | None:intergenic | 20.0% |
| !!! | CCTGTAAAATATTTTGTTTT+TGG | - | chr1_3:8560004-8560023 | Msa0101900:intron | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | + | chr1_3:8560037-8560056 | None:intergenic | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | + | chr1_3:8560038-8560057 | None:intergenic | 20.0% |
| !! | ATTTATAAGAGGCTAAAATA+TGG | + | chr1_3:8560088-8560107 | None:intergenic | 20.0% |
| !! | ACATATATAAACTAAAGACA+AGG | + | chr1_3:8560212-8560231 | None:intergenic | 20.0% |
| !! | ATTACTAGACTAAAATAAAG+TGG | + | chr1_3:8560243-8560262 | None:intergenic | 20.0% |
| !! | TTTAAGAGAGATAATAAACA+GGG | + | chr1_3:8560898-8560917 | None:intergenic | 20.0% |
| !!! | TTTTAAGAGAGATAATAAAC+AGG | + | chr1_3:8560899-8560918 | None:intergenic | 20.0% |
| !!! | ATGAAACAATATTTTATTGG+GGG | - | chr1_3:8560972-8560991 | Msa0101900:intron | 20.0% |
| !! | TTATGAACTTATGATTATTC+AGG | - | chr1_3:8561129-8561148 | Msa0101900:intron | 20.0% |
| !! | TATGAACTTATGATTATTCA+GGG | - | chr1_3:8561130-8561149 | Msa0101900:intron | 20.0% |
| !! | TAAATTTAATTAGAAGAGTG+GGG | + | chr1_3:8561805-8561824 | None:intergenic | 20.0% |
| !!! | GATCAACTATTTTTCTTAAA+GGG | + | chr1_3:8562112-8562131 | None:intergenic | 20.0% |
| !!! | AGATCAACTATTTTTCTTAA+AGG | + | chr1_3:8562113-8562132 | None:intergenic | 20.0% |
| !!! | CAATAACCATTTTATTCTTA+GGG | + | chr1_3:8562227-8562246 | None:intergenic | 20.0% |
| !!! | TCAATAACCATTTTATTCTT+AGG | + | chr1_3:8562228-8562247 | None:intergenic | 20.0% |
| !! | AAATTAAGACCTTAATTAGT+TGG | - | chr1_3:8562248-8562267 | Msa0101900:CDS | 20.0% |
| !! | AACTAGAAGATAAAATCAAA+AGG | + | chr1_3:8562393-8562412 | None:intergenic | 20.0% |
| !! | TTCATATTCAAATGTTAAGA+GGG | + | chr1_3:8562892-8562911 | None:intergenic | 20.0% |
| !! | ATTCATATTCAAATGTTAAG+AGG | + | chr1_3:8562893-8562912 | None:intergenic | 20.0% |
| !! | TCAGAAATAAAGTGAAAATA+AGG | - | chr1_3:8563149-8563168 | Msa0101900:intron | 20.0% |
| !! | TATACAATAAAACTCTTAGT+AGG | + | chr1_3:8563311-8563330 | None:intergenic | 20.0% |
| !!! | TGATTTTATGTGAAGTATAT+TGG | - | chr1_3:8563491-8563510 | Msa0101900:intron | 20.0% |
| !!! | AGATTTTTAAGTTATTCTTC+TGG | - | chr1_3:8563770-8563789 | Msa0101900:intron | 20.0% |
| !!! | TTTCATTGATTACTGAAAAA+CGG | - | chr1_3:8563885-8563904 | Msa0101900:intron | 20.0% |
| ! | TGTAAAAAAGAAGGGTAAAA+AGG | + | chr1_3:8555929-8555948 | None:intergenic | 25.0% |
| !!! | TTTTTACCCTTCTTTTTTAC+AGG | - | chr1_3:8555928-8555947 | Msa0101900:three_prime_UTR | 25.0% |
| !!! | TTTTACCCTTCTTTTTTACA+GGG | - | chr1_3:8555929-8555948 | Msa0101900:three_prime_UTR | 25.0% |
| !!! | AAAGGTTTTGGATATTGAAA+GGG | - | chr1_3:8556077-8556096 | Msa0101900:three_prime_UTR | 25.0% |
| ! | AGCAAACAAATGAATGAATT+GGG | - | chr1_3:8556175-8556194 | Msa0101900:three_prime_UTR | 25.0% |
| ! | GAATCAATTTAGTGTATCTT+TGG | - | chr1_3:8556337-8556356 | Msa0101900:intron | 25.0% |
| ! | AATTTAGTGTATCTTTGGAT+TGG | - | chr1_3:8556342-8556361 | Msa0101900:intron | 25.0% |
| ! | ACTTGAGTAAAATATGCATT+TGG | + | chr1_3:8556642-8556661 | None:intergenic | 25.0% |
| ! | TATTATTATTAGCTCACAAG+TGG | - | chr1_3:8556695-8556714 | Msa0101900:intron | 25.0% |
| ! | ATTATTATTAGCTCACAAGT+GGG | - | chr1_3:8556696-8556715 | Msa0101900:intron | 25.0% |
| ! | TTAATTAAGCACTTGTGTAT+AGG | - | chr1_3:8557039-8557058 | Msa0101900:intron | 25.0% |
| !! | TAAGCCTATAAATTGTTTTC+AGG | + | chr1_3:8557104-8557123 | None:intergenic | 25.0% |
| ! | AAGCTTATAAAAATAACCTG+AGG | + | chr1_3:8557129-8557148 | None:intergenic | 25.0% |
| !! | AAAACTATAACTATGGCTTT+TGG | + | chr1_3:8557218-8557237 | None:intergenic | 25.0% |
| ! | GTATAAATGATAGAAGAGAA+GGG | + | chr1_3:8557286-8557305 | None:intergenic | 25.0% |
| ! | ATTATCTTGTATATCAATGC+TGG | - | chr1_3:8557525-8557544 | Msa0101900:intron | 25.0% |
| ! | TTATCTTGTATATCAATGCT+GGG | - | chr1_3:8557526-8557545 | Msa0101900:intron | 25.0% |
| !!! | CAATTTTAAGATCAAAGTCA+CGG | + | chr1_3:8557714-8557733 | None:intergenic | 25.0% |
| !!! | TCTGTATTTTTGAAAACAGA+TGG | + | chr1_3:8557847-8557866 | None:intergenic | 25.0% |
| ! | AGAGCAGATAAATATACATT+AGG | + | chr1_3:8558533-8558552 | None:intergenic | 25.0% |
| !!! | TGCAAAACATGTAATTTGTT+AGG | + | chr1_3:8558556-8558575 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTCATAGACT+TGG | + | chr1_3:8558847-8558866 | None:intergenic | 25.0% |
| !! | GTCTATGACAATATTTTCTA+AGG | - | chr1_3:8558848-8558867 | Msa0101900:intron | 25.0% |
| ! | TAGCTATTTAACTACTACAA+CGG | + | chr1_3:8558920-8558939 | None:intergenic | 25.0% |
| ! | TAGTTAAATAGCTAGAATAC+TGG | - | chr1_3:8558926-8558945 | Msa0101900:intron | 25.0% |
| ! | ATTAATATCTAGCGTTACAT+TGG | + | chr1_3:8558986-8559005 | None:intergenic | 25.0% |
| ! | ATGAAAAATGTCCAATACAA+TGG | + | chr1_3:8559067-8559086 | None:intergenic | 25.0% |
| !! | ATTTTTCATTTTGCAGATCT+CGG | - | chr1_3:8559078-8559097 | Msa0101900:intron | 25.0% |
| ! | CTGCAACAATTGAAAAATAT+TGG | - | chr1_3:8559127-8559146 | Msa0101900:intron | 25.0% |
| ! | TTATTCTCTAGATTTGATGA+TGG | - | chr1_3:8559165-8559184 | Msa0101900:intron | 25.0% |
| !!! | ATTTGATGATGGTGTAAAAA+TGG | - | chr1_3:8559176-8559195 | Msa0101900:intron | 25.0% |
| !!! | ACATCAATTATTTCTGAGTT+TGG | + | chr1_3:8559428-8559447 | None:intergenic | 25.0% |
| !! | GAAATAATTGATGTTTTCGT+AGG | - | chr1_3:8559434-8559453 | Msa0101900:intron | 25.0% |
| ! | TTAAGATTAATCTGTGCTTA+TGG | - | chr1_3:8559485-8559504 | Msa0101900:intron | 25.0% |
| !!! | TAATCTCAATGGATTGTTTA+TGG | - | chr1_3:8559673-8559692 | Msa0101900:intron | 25.0% |
| !!! | AATGTTTTTGTTTCACTCAA+TGG | - | chr1_3:8559745-8559764 | Msa0101900:intron | 25.0% |
| ! | TTCTCATAAAGGCTAAAATA+TGG | - | chr1_3:8559813-8559832 | Msa0101900:intron | 25.0% |
| !! | TAAAGGCTAAAATATGGTTT+TGG | - | chr1_3:8559819-8559838 | Msa0101900:intron | 25.0% |
| !!! | GGAACTTTTTTCTACAAAAT+GGG | + | chr1_3:8559986-8560005 | None:intergenic | 25.0% |
| !!! | AGGAACTTTTTTCTACAAAA+TGG | + | chr1_3:8559987-8560006 | None:intergenic | 25.0% |
| ! | TATATAAACTAAAGACAAGG+AGG | + | chr1_3:8560209-8560228 | None:intergenic | 25.0% |
| !! | TGATGACTAATCTAATTTGT+AGG | - | chr1_3:8560389-8560408 | Msa0101900:intron | 25.0% |
| ! | TTGATTCTATTTGATGTTAC+AGG | - | chr1_3:8560508-8560527 | Msa0101900:intron | 25.0% |
| !!! | ACAGAATCATTTGATTTTCA+AGG | + | chr1_3:8560924-8560943 | None:intergenic | 25.0% |
| ! | TCATCTAGAAATAAACAGTA+CGG | + | chr1_3:8561034-8561053 | None:intergenic | 25.0% |
| ! | GATTTCAGATATGTTATGTT+TGG | - | chr1_3:8561079-8561098 | Msa0101900:intron | 25.0% |
| ! | ATAGGAGAAATAAGAATGAA+AGG | - | chr1_3:8561186-8561205 | Msa0101900:CDS | 25.0% |
| ! | AAGAATGAAAGGAATAGTTA+TGG | - | chr1_3:8561197-8561216 | Msa0101900:CDS | 25.0% |
| ! | GAGAATATAATTCTTCACAA+AGG | + | chr1_3:8561253-8561272 | None:intergenic | 25.0% |
| ! | TTCTTTCATTTCAATTTCTC+TGG | - | chr1_3:8561318-8561337 | Msa0101900:intron | 25.0% |
| ! | GTCATAGAAAGAATAATTGA+TGG | + | chr1_3:8561357-8561376 | None:intergenic | 25.0% |
| !! | CAGTATTTCTAACTAAACTT+TGG | - | chr1_3:8561485-8561504 | Msa0101900:intron | 25.0% |
| ! | TTATGAAGAATGGGAAATAA+TGG | + | chr1_3:8561692-8561711 | None:intergenic | 25.0% |
| ! | CATAAGCTATTATGAAGAAT+GGG | + | chr1_3:8561701-8561720 | None:intergenic | 25.0% |
| !! | AATAGCTTATGCTTTTAGTA+TGG | - | chr1_3:8561710-8561729 | Msa0101900:CDS | 25.0% |
| !!! | CATCAATATTTTGGACATAT+AGG | + | chr1_3:8561854-8561873 | None:intergenic | 25.0% |
| !! | AACGACTTTCATCAATATTT+TGG | + | chr1_3:8561863-8561882 | None:intergenic | 25.0% |
| !! | AATATTGATGAAAGTCGTTT+TGG | - | chr1_3:8561864-8561883 | Msa0101900:CDS | 25.0% |
| !!! | ATATTGATGAAAGTCGTTTT+GGG | - | chr1_3:8561865-8561884 | Msa0101900:CDS | 25.0% |
| ! | ATTATCCAAATTGTCCTTTA+TGG | - | chr1_3:8562192-8562211 | Msa0101900:CDS | 25.0% |
| ! | TTATCCAAATTGTCCTTTAT+GGG | - | chr1_3:8562193-8562212 | Msa0101900:CDS | 25.0% |
| ! | TTTGTTCCCTAAGAATAAAA+TGG | - | chr1_3:8562218-8562237 | Msa0101900:CDS | 25.0% |
| ! | AGTATATACTACTGAGATAA+AGG | - | chr1_3:8562952-8562971 | Msa0101900:intron | 25.0% |
| ! | ACAAAATAAAAACAAGGTCA+TGG | + | chr1_3:8563012-8563031 | None:intergenic | 25.0% |
| ! | CAGGAAACAAAATAAAAACA+AGG | + | chr1_3:8563018-8563037 | None:intergenic | 25.0% |
| !!! | AGAAACATTTTACTGTTTCT+TGG | - | chr1_3:8563110-8563129 | Msa0101900:intron | 25.0% |
| ! | CAAAATGATATTAAGACTAG+TGG | + | chr1_3:8563233-8563252 | None:intergenic | 25.0% |
| !!! | TATCATTTTGTTTCATCAAC+TGG | - | chr1_3:8563243-8563262 | Msa0101900:intron | 25.0% |
| !!! | TTTTAGTTGTAACACCTTTA+AGG | + | chr1_3:8563371-8563390 | None:intergenic | 25.0% |
| ! | TGACATAGATGTAAAATAGA+AGG | - | chr1_3:8563393-8563412 | Msa0101900:intron | 25.0% |
| ! | ATAGATGTAAAATAGAAGGA+CGG | - | chr1_3:8563397-8563416 | Msa0101900:intron | 25.0% |
| ! | ACTTCACATAAAATCACTAA+AGG | + | chr1_3:8563487-8563506 | None:intergenic | 25.0% |
| !!! | CATAACTTCATTATTTTGGT+TGG | - | chr1_3:8563549-8563568 | Msa0101900:intron | 25.0% |
| ! | GATAGAAGAGTTAATTTACT+AGG | + | chr1_3:8563585-8563604 | None:intergenic | 25.0% |
| ! | GTAAATTAACTCTTCTATCA+TGG | - | chr1_3:8563586-8563605 | Msa0101900:intron | 25.0% |
| ! | GTGGAGAAAATTCATTTAAA+TGG | - | chr1_3:8563615-8563634 | Msa0101900:intron | 25.0% |
| !!! | GAAAGGTTTTGGATATTGAA+AGG | - | chr1_3:8556076-8556095 | Msa0101900:three_prime_UTR | 30.0% |
| GAGCAAACAAATGAATGAAT+TGG | - | chr1_3:8556174-8556193 | Msa0101900:three_prime_UTR | 30.0% | |
| GTTTCCATATTCAATGTCTA+AGG | - | chr1_3:8556289-8556308 | Msa0101900:intron | 30.0% | |
| CTGTGAATTAGACGAAATAA+TGG | + | chr1_3:8556427-8556446 | None:intergenic | 30.0% | |
| CAGTATATTTAGTGCATGTT+TGG | + | chr1_3:8556455-8556474 | None:intergenic | 30.0% | |
| CAAACATGCACTAAATATAC+TGG | - | chr1_3:8556453-8556472 | Msa0101900:intron | 30.0% | |
| !! | TAAATATACTGGCTCCAATT+AGG | - | chr1_3:8556464-8556483 | Msa0101900:intron | 30.0% |
| GCTAATAATAATAGCTAGCT+TGG | + | chr1_3:8556688-8556707 | None:intergenic | 30.0% | |
| TATCAACAATCAAGCCTTAA+GGG | + | chr1_3:8556923-8556942 | None:intergenic | 30.0% | |
| TTATCAACAATCAAGCCTTA+AGG | + | chr1_3:8556924-8556943 | None:intergenic | 30.0% | |
| AATTTATAGGCTTATACCTC+AGG | - | chr1_3:8557110-8557129 | Msa0101900:CDS | 30.0% | |
| TATTCATTTGTGTATGTGCT+TGG | + | chr1_3:8557154-8557173 | None:intergenic | 30.0% | |
| GGTATAAATGATAGAAGAGA+AGG | + | chr1_3:8557287-8557306 | None:intergenic | 30.0% | |
| ATAGACCAACATATGATTGA+TGG | + | chr1_3:8557349-8557368 | None:intergenic | 30.0% | |
| TCTATCTTGTCATAGAAATG+TGG | - | chr1_3:8557364-8557383 | Msa0101900:intron | 30.0% | |
| ! | CATTTAGAGTTTCATCAACA+GGG | + | chr1_3:8557447-8557466 | None:intergenic | 30.0% |
| ! | TCATTTAGAGTTTCATCAAC+AGG | + | chr1_3:8557448-8557467 | None:intergenic | 30.0% |
| ATACAGATTGTGAGACTATT+TGG | - | chr1_3:8557860-8557879 | Msa0101900:intron | 30.0% | |
| TCAATTGATTGTGGTGAATT+TGG | - | chr1_3:8557979-8557998 | Msa0101900:intron | 30.0% | |
| TGTTATGGGATACTTTCTAT+GGG | - | chr1_3:8558013-8558032 | Msa0101900:intron | 30.0% | |
| ! | TTGTCGAGAAAAATTTGCTT+TGG | + | chr1_3:8558473-8558492 | None:intergenic | 30.0% |
| GCAAATAACAATATAAGTGC+TGG | - | chr1_3:8558506-8558525 | Msa0101900:intron | 30.0% | |
| TCAGATTTACTATCCAATTC+AGG | + | chr1_3:8558653-8558672 | None:intergenic | 30.0% | |
| AGAAAGTGAAAAGAAAACAC+AGG | - | chr1_3:8558696-8558715 | Msa0101900:intron | 30.0% | |
| CATATGTTGTTCAAAGTTGA+CGG | - | chr1_3:8559036-8559055 | Msa0101900:intron | 30.0% | |
| !! | TTGAAAAATATTGGTGTCAG+AGG | - | chr1_3:8559136-8559155 | Msa0101900:intron | 30.0% |
| ! | TGATAATGTGCAATAATCTC+TGG | + | chr1_3:8559228-8559247 | None:intergenic | 30.0% |
| AATAAGAAGATACCATAGCA+AGG | - | chr1_3:8559515-8559534 | Msa0101900:intron | 30.0% | |
| ATAAGAAGATACCATAGCAA+GGG | - | chr1_3:8559516-8559535 | Msa0101900:intron | 30.0% | |
| ATTTGCCTTCATAATCTCAA+TGG | - | chr1_3:8559662-8559681 | Msa0101900:intron | 30.0% | |
| ACAATCCATTGAGATTATGA+AGG | + | chr1_3:8559670-8559689 | None:intergenic | 30.0% | |
| TCAATGGTGTTTGTTCTAAT+TGG | - | chr1_3:8559761-8559780 | Msa0101900:intron | 30.0% | |
| !!! | TTGTTTTTGAAAATAGTCCC+TGG | - | chr1_3:8559915-8559934 | Msa0101900:intron | 30.0% |
| ATGCAAAACATCACAAAAGT+GGG | + | chr1_3:8559942-8559961 | None:intergenic | 30.0% | |
| TATGCAAAACATCACAAAAG+TGG | + | chr1_3:8559943-8559962 | None:intergenic | 30.0% | |
| ! | AAGAGGCTAAAATATGGTTT+TGG | + | chr1_3:8560082-8560101 | None:intergenic | 30.0% |
| AGAATGGTGCAATTTATAAG+AGG | + | chr1_3:8560099-8560118 | None:intergenic | 30.0% | |
| TAGGCATGACATTGTTATAT+TGG | - | chr1_3:8560408-8560427 | Msa0101900:intron | 30.0% | |
| TCAAATACTTGAGTCTTTCT+TGG | - | chr1_3:8560431-8560450 | Msa0101900:intron | 30.0% | |
| CTAGCATAATCAATCTTCAA+TGG | + | chr1_3:8560564-8560583 | None:intergenic | 30.0% | |
| CATTGAAGATTGATTATGCT+AGG | - | chr1_3:8560562-8560581 | Msa0101900:intron | 30.0% | |
| ! | GATCAAATTGACTTCATAGT+TGG | - | chr1_3:8560612-8560631 | Msa0101900:CDS | 30.0% |
| ! | AACTTTAGCACCTTTAACTT+TGG | + | chr1_3:8560657-8560676 | None:intergenic | 30.0% |
| AATCCAAAATAAATGCGACA+TGG | + | chr1_3:8560688-8560707 | None:intergenic | 30.0% | |
| AAATAGGAGTAGCATTAGAA+AGG | - | chr1_3:8560713-8560732 | Msa0101900:CDS | 30.0% | |
| TTCCTAACTTTAACAAACCT+AGG | - | chr1_3:8560797-8560816 | Msa0101900:intron | 30.0% | |
| !! | TACCTAGGTTTGTTAAAGTT+AGG | + | chr1_3:8560802-8560821 | None:intergenic | 30.0% |
| AATCAAATGATTCTGTCAAC+TGG | - | chr1_3:8560928-8560947 | Msa0101900:intron | 30.0% | |
| ATCAAATGATTCTGTCAACT+GGG | - | chr1_3:8560929-8560948 | Msa0101900:intron | 30.0% | |
| ! | AAACAATATTTTATTGGGGG+TGG | - | chr1_3:8560975-8560994 | Msa0101900:intron | 30.0% |
| ! | AACAATATTTTATTGGGGGT+GGG | - | chr1_3:8560976-8560995 | Msa0101900:intron | 30.0% |
| AGAAATAAACAGTACGGTAA+TGG | + | chr1_3:8561028-8561047 | None:intergenic | 30.0% | |
| GATATGTTATGTTTGGATGA+AGG | - | chr1_3:8561086-8561105 | Msa0101900:intron | 30.0% | |
| ATGTTTGGATGAAGGATATA+AGG | - | chr1_3:8561094-8561113 | Msa0101900:intron | 30.0% | |
| TGTTTGGATGAAGGATATAA+GGG | - | chr1_3:8561095-8561114 | Msa0101900:intron | 30.0% | |
| AGGGGATACCATATATAAAT+AGG | - | chr1_3:8561168-8561187 | Msa0101900:CDS | 30.0% | |
| ! | CATTTGATAGTTGTGATGAA+AGG | - | chr1_3:8561221-8561240 | Msa0101900:CDS | 30.0% |
| AGAAAGATAGAAAGAGTCAA+GGG | + | chr1_3:8561302-8561321 | None:intergenic | 30.0% | |
| AAGAAAGATAGAAAGAGTCA+AGG | + | chr1_3:8561303-8561322 | None:intergenic | 30.0% | |
| ATGACTTAGTTGTTGCATTT+AGG | - | chr1_3:8561372-8561391 | Msa0101900:intron | 30.0% | |
| TATAGCCCAGAAAAAATCTT+TGG | + | chr1_3:8561433-8561452 | None:intergenic | 30.0% | |
| ! | ATGTTTCTACTTTCTAGTCA+TGG | - | chr1_3:8561542-8561561 | Msa0101900:CDS | 30.0% |
| GCATAAGCTATTATGAAGAA+TGG | + | chr1_3:8561702-8561721 | None:intergenic | 30.0% | |
| ! | AAATTTAAAATGCATGCCTG+AGG | - | chr1_3:8561818-8561837 | Msa0101900:CDS | 30.0% |
| ! | TACCAACTGTATTTTCTTTC+AGG | - | chr1_3:8561925-8561944 | Msa0101900:CDS | 30.0% |
| !! | TATTTTTCTTAAAGGGTGTG+AGG | + | chr1_3:8562105-8562124 | None:intergenic | 30.0% |
| AATTCCCATAAAGGACAATT+TGG | + | chr1_3:8562200-8562219 | None:intergenic | 30.0% | |
| TTAAGACCTTAATTAGTTGG+AGG | - | chr1_3:8562251-8562270 | Msa0101900:CDS | 30.0% | |
| TAAGACCTTAATTAGTTGGA+GGG | - | chr1_3:8562252-8562271 | Msa0101900:CDS | 30.0% | |
| TAATACCCTCCAACTAATTA+AGG | + | chr1_3:8562260-8562279 | None:intergenic | 30.0% | |
| !! | AATTAGTTGGAGGGTATTAT+AGG | - | chr1_3:8562261-8562280 | Msa0101900:CDS | 30.0% |
| ! | ATGTTGCTTATATTCAAGAC+CGG | - | chr1_3:8562354-8562373 | Msa0101900:CDS | 30.0% |
| AAAAGGAAAACTACTCAATC+CGG | + | chr1_3:8562376-8562395 | None:intergenic | 30.0% | |
| CTTGTGCTATATGTTAATTG+TGG | + | chr1_3:8562585-8562604 | None:intergenic | 30.0% | |
| ATGCAGCATTTAGTCAAAAT+GGG | + | chr1_3:8562678-8562697 | None:intergenic | 30.0% | |
| AAATGTCAACTTCAACCAAT+TGG | - | chr1_3:8562766-8562785 | Msa0101900:intron | 30.0% | |
| AAGCATATCAAACAGACAAA+AGG | + | chr1_3:8562843-8562862 | None:intergenic | 30.0% | |
| ! | CTGTTTGATATGCTTCATTT+TGG | - | chr1_3:8562848-8562867 | Msa0101900:intron | 30.0% |
| TATTGTCTACTATAGTGTGA+AGG | - | chr1_3:8562917-8562936 | Msa0101900:intron | 30.0% | |
| ATTGTCTACTATAGTGTGAA+GGG | - | chr1_3:8562918-8562937 | Msa0101900:intron | 30.0% | |
| !! | ACGTACAAAACTTTGAAATC+AGG | + | chr1_3:8563037-8563056 | None:intergenic | 30.0% |
| TGTGAAAACTATTGCTTCTA+CGG | + | chr1_3:8563064-8563083 | None:intergenic | 30.0% | |
| ATTACAACATCCAACCTTAA+AGG | - | chr1_3:8563354-8563373 | Msa0101900:intron | 30.0% | |
| CATAAGGAGAAAAAAAAGCA+AGG | - | chr1_3:8563434-8563453 | Msa0101900:intron | 30.0% | |
| TTTATGTGAAGTATATTGGC+AGG | - | chr1_3:8563495-8563514 | Msa0101900:intron | 30.0% | |
| ! | GCAGCATAACTTCATTATTT+TGG | - | chr1_3:8563545-8563564 | Msa0101900:intron | 30.0% |
| TATTTCAGTTGTACATGAGA+TGG | - | chr1_3:8563660-8563679 | Msa0101900:intron | 30.0% | |
| ATTACTGAAAAACGGTTACA+AGG | - | chr1_3:8563893-8563912 | Msa0101900:intron | 30.0% | |
| TAGTTACCAGAGAAAGACTT+GGG | + | chr1_3:8555853-8555872 | None:intergenic | 35.0% | |
| TTAGTTACCAGAGAAAGACT+TGG | + | chr1_3:8555854-8555873 | None:intergenic | 35.0% | |
| ATCGTCCCTGTAAAAAAGAA+GGG | + | chr1_3:8555937-8555956 | None:intergenic | 35.0% | |
| ! | ATTGTTGTTGTGATCAGCTT+CGG | + | chr1_3:8555982-8556001 | None:intergenic | 35.0% |
| !! | TGAGATTATTGTTTTACCCG+AGG | - | chr1_3:8556141-8556160 | Msa0101900:three_prime_UTR | 35.0% |
| !! | TATTGTTTTACCCGAGGATT+TGG | - | chr1_3:8556147-8556166 | Msa0101900:three_prime_UTR | 35.0% |
| TTTGCTCAATTCCAAATCCT+CGG | + | chr1_3:8556161-8556180 | None:intergenic | 35.0% | |
| CACTCCTTAGACATTGAATA+TGG | + | chr1_3:8556296-8556315 | None:intergenic | 35.0% | |
| !! | ATTACTATAAAGGGGGTGTT+TGG | - | chr1_3:8557007-8557026 | Msa0101900:intron | 35.0% |
| !! | TTACTATAAAGGGGGTGTTT+GGG | - | chr1_3:8557008-8557027 | Msa0101900:intron | 35.0% |
| AAGTGCCATCAATCATATGT+TGG | - | chr1_3:8557341-8557360 | Msa0101900:intron | 35.0% | |
| TAGAAATGTGGACCAGTAAA+AGG | - | chr1_3:8557376-8557395 | Msa0101900:intron | 35.0% | |
| ACCAGTAAAAGGCAAAAAGA+AGG | - | chr1_3:8557387-8557406 | Msa0101900:intron | 35.0% | |
| CCAGTAAAAGGCAAAAAGAA+GGG | - | chr1_3:8557388-8557407 | Msa0101900:intron | 35.0% | |
| TTGAATTATCTCCTTCACCA+GGG | + | chr1_3:8557609-8557628 | None:intergenic | 35.0% | |
| ATAATTCAACATGCTGCACT+GGG | - | chr1_3:8557620-8557639 | Msa0101900:intron | 35.0% | |
| TCTTAAAATTGCACATGCCT+CGG | - | chr1_3:8557723-8557742 | Msa0101900:intron | 35.0% | |
| ! | TTGCATATGACAGAGTTGAT+GGG | - | chr1_3:8557956-8557975 | Msa0101900:intron | 35.0% |
| ATTGTGGTGAATTTGGAGAT+TGG | - | chr1_3:8557986-8558005 | Msa0101900:intron | 35.0% | |
| GTGTTATGGGATACTTTCTA+TGG | - | chr1_3:8558012-8558031 | Msa0101900:intron | 35.0% | |
| TCAAAACAGACACTTCTACA+TGG | - | chr1_3:8558055-8558074 | Msa0101900:intron | 35.0% | |
| CAAAACAGACACTTCTACAT+GGG | - | chr1_3:8558056-8558075 | Msa0101900:intron | 35.0% | |
| !! | TGAAGCTCTAAAGTCATTAG+AGG | - | chr1_3:8558137-8558156 | Msa0101900:intron | 35.0% |
| CATCTGAATGATGAAGAGAT+TGG | + | chr1_3:8558308-8558327 | None:intergenic | 35.0% | |
| ! | TCAATTACCATGTTTTCCGT+TGG | + | chr1_3:8558626-8558645 | None:intergenic | 35.0% |
| AAGTGAAAAGAAAACACAGG+CGG | - | chr1_3:8558699-8558718 | Msa0101900:intron | 35.0% | |
| ACTGGACAAAACTTATATGC+AGG | + | chr1_3:8559010-8559029 | None:intergenic | 35.0% | |
| CGTCAACTTTGAACAACATA+TGG | + | chr1_3:8559038-8559057 | None:intergenic | 35.0% | |
| ATTGTTGCAGAATAAGCTTC+AGG | + | chr1_3:8559117-8559136 | None:intergenic | 35.0% | |
| ! | TGATGGTGTAAAAATGGATG+AGG | - | chr1_3:8559182-8559201 | Msa0101900:intron | 35.0% |
| TAAAAATGGATGAGGAAGGA+TGG | - | chr1_3:8559190-8559209 | Msa0101900:intron | 35.0% | |
| ACAGTAATTGACTGTTTCAC+CGG | - | chr1_3:8559270-8559289 | Msa0101900:CDS | 35.0% | |
| ! | AATGTGTTCCAACTTGCTTT+GGG | - | chr1_3:8559590-8559609 | Msa0101900:intron | 35.0% |
| CAAATCCATTGAGAACATGA+AGG | + | chr1_3:8559647-8559666 | None:intergenic | 35.0% | |
| ! | ATCACTCTTCACTCTTTTAC+CGG | - | chr1_3:8559703-8559722 | Msa0101900:intron | 35.0% |
| TTCTAATTGGATTGTTCACC+TGG | - | chr1_3:8559774-8559793 | Msa0101900:intron | 35.0% | |
| TGCAAAACATCACAAAAGTG+GGG | + | chr1_3:8559941-8559960 | None:intergenic | 35.0% | |
| ! | TTTGTGATGTTTTGCATACG+TGG | - | chr1_3:8559945-8559964 | Msa0101900:intron | 35.0% |
| TTGAAACCAGACATATTTGC+AGG | - | chr1_3:8560054-8560073 | Msa0101900:intron | 35.0% | |
| TGAAACCAGACATATTTGCA+GGG | - | chr1_3:8560055-8560074 | Msa0101900:intron | 35.0% | |
| AACAAATACTGCTCACAGAA+TGG | + | chr1_3:8560115-8560134 | None:intergenic | 35.0% | |
| ATAAACTAAAGACAAGGAGG+AGG | + | chr1_3:8560206-8560225 | None:intergenic | 35.0% | |
| TGTAGACAAGTGATTCATGT+TGG | - | chr1_3:8560331-8560350 | Msa0101900:intron | 35.0% | |
| GTAGACAAGTGATTCATGTT+GGG | - | chr1_3:8560332-8560351 | Msa0101900:intron | 35.0% | |
| ! | TAATGCTGCTATTTATCGAG+TGG | - | chr1_3:8560587-8560606 | Msa0101900:CDS | 35.0% |
| AATAAATGCGACATGGCTAA+AGG | + | chr1_3:8560681-8560700 | None:intergenic | 35.0% | |
| ! | TAGCCATGTCGCATTTATTT+TGG | - | chr1_3:8560682-8560701 | Msa0101900:CDS | 35.0% |
| !! | GGTTTGTTAAAGTTAGGAAG+AGG | + | chr1_3:8560796-8560815 | None:intergenic | 35.0% |
| GCATAGCACAAATATTACCT+AGG | + | chr1_3:8560817-8560836 | None:intergenic | 35.0% | |
| ! | ACAATATTTTATTGGGGGTG+GGG | - | chr1_3:8560977-8560996 | Msa0101900:intron | 35.0% |
| TTATGATTATTCAGGGCAGT+TGG | - | chr1_3:8561137-8561156 | Msa0101900:intron | 35.0% | |
| TTTACTATTTCCACTGCTTC+TGG | - | chr1_3:8561407-8561426 | Msa0101900:intron | 35.0% | |
| !!! | TTCTGGCCAAAGATTTTTTC+TGG | - | chr1_3:8561424-8561443 | Msa0101900:intron | 35.0% |
| !!! | TCTGGCCAAAGATTTTTTCT+GGG | - | chr1_3:8561425-8561444 | Msa0101900:intron | 35.0% |
| GAAAGTAGAAACATGTCACA+TGG | + | chr1_3:8561536-8561555 | None:intergenic | 35.0% | |
| TCTTTCCTTCAAGTCAAGTT+AGG | - | chr1_3:8561584-8561603 | Msa0101900:CDS | 35.0% | |
| ! | GCTTATGCTTTTAGTATGGT+TGG | - | chr1_3:8561714-8561733 | Msa0101900:CDS | 35.0% |
| AGCCTGAAAGAAAATACAGT+TGG | + | chr1_3:8561930-8561949 | None:intergenic | 35.0% | |
| TAGGGAACAAATTCCCATAA+AGG | + | chr1_3:8562209-8562228 | None:intergenic | 35.0% | |
| TATGTAGAGCTATTGCATAG+CGG | - | chr1_3:8562437-8562456 | Msa0101900:CDS | 35.0% | |
| TTGTGAAATAGCTGCTATAG+CGG | - | chr1_3:8562506-8562525 | Msa0101900:CDS | 35.0% | |
| AGCATTTAGTCAAAATGGGA+GGG | + | chr1_3:8562674-8562693 | None:intergenic | 35.0% | |
| GATGCAGCATTTAGTCAAAA+TGG | + | chr1_3:8562679-8562698 | None:intergenic | 35.0% | |
| TGAAGTTGACATTTCTTGGA+AGG | + | chr1_3:8562760-8562779 | None:intergenic | 35.0% | |
| TGGTTGAAGTTGACATTTCT+TGG | + | chr1_3:8562764-8562783 | None:intergenic | 35.0% | |
| ATAGAGATAACTCTGCCAAT+TGG | + | chr1_3:8562784-8562803 | None:intergenic | 35.0% | |
| !! | AGTTGTAACACCTTTAAGGT+TGG | + | chr1_3:8563367-8563386 | None:intergenic | 35.0% |
| TTAGTTAGAAGCTTGTGATG+AGG | + | chr1_3:8563949-8563968 | None:intergenic | 35.0% | |
| ACATGAAAAGAAGAATGCAG+AGG | + | chr1_3:8564051-8564070 | None:intergenic | 35.0% | |
| AGAACCGAGAGATTGAATAG+CGG | + | chr1_3:8555817-8555836 | None:intergenic | 40.0% | |
| CATCGTCCCTGTAAAAAAGA+AGG | + | chr1_3:8555938-8555957 | None:intergenic | 40.0% | |
| !!! | CTTCTTTTTTACAGGGACGA+TGG | - | chr1_3:8555936-8555955 | Msa0101900:three_prime_UTR | 40.0% |
| GATTCATCAAACCTCATTCC+TGG | - | chr1_3:8556005-8556024 | Msa0101900:three_prime_UTR | 40.0% | |
| TTGCTCAATTCCAAATCCTC+GGG | + | chr1_3:8556160-8556179 | None:intergenic | 40.0% | |
| TCTTTGCCTGAAAGGAAAGA+GGG | + | chr1_3:8556204-8556223 | None:intergenic | 40.0% | |
| TTCTTTGCCTGAAAGGAAAG+AGG | + | chr1_3:8556205-8556224 | None:intergenic | 40.0% | |
| TTCCTTTCAGGCAAAGAATG+AGG | - | chr1_3:8556207-8556226 | Msa0101900:three_prime_UTR | 40.0% | |
| TACCTCATTCTTTGCCTGAA+AGG | + | chr1_3:8556212-8556231 | None:intergenic | 40.0% | |
| CGCTGAGTTTCACAGAATTA+CGG | - | chr1_3:8556367-8556386 | Msa0101900:intron | 40.0% | |
| !!! | ACTCTGGTTTTAGCGAATCA+CGG | - | chr1_3:8556396-8556415 | Msa0101900:intron | 40.0% |
| CGCTCACTATCTAAGTTGTT+GGG | + | chr1_3:8556545-8556564 | None:intergenic | 40.0% | |
| TCGCTCACTATCTAAGTTGT+TGG | + | chr1_3:8556546-8556565 | None:intergenic | 40.0% | |
| ! | CCCTTCTTTTTGCCTTTTAC+TGG | + | chr1_3:8557391-8557410 | None:intergenic | 40.0% |
| TCTAAATGAAGTGAGTGCAG+AGG | - | chr1_3:8557459-8557478 | Msa0101900:intron | 40.0% | |
| CACAGTAGGATGATTCACTT+TGG | + | chr1_3:8557552-8557571 | None:intergenic | 40.0% | |
| AGTGAATCATCCTACTGTGA+TGG | - | chr1_3:8557553-8557572 | Msa0101900:intron | 40.0% | |
| GTTGAATTATCTCCTTCACC+AGG | + | chr1_3:8557610-8557629 | None:intergenic | 40.0% | |
| GATAATTCAACATGCTGCAC+TGG | - | chr1_3:8557619-8557638 | Msa0101900:intron | 40.0% | |
| AAGATCAAAGTCACGGTTCT+GGG | + | chr1_3:8557707-8557726 | None:intergenic | 40.0% | |
| TAAGATCAAAGTCACGGTTC+TGG | + | chr1_3:8557708-8557727 | None:intergenic | 40.0% | |
| ! | AGTGATTCTGATTCGTTAGC+TGG | + | chr1_3:8557916-8557935 | None:intergenic | 40.0% |
| AGAATCACTTCCCATGAGTT+TGG | - | chr1_3:8557927-8557946 | Msa0101900:CDS | 40.0% | |
| GTTGCATATGACAGAGTTGA+TGG | - | chr1_3:8557955-8557974 | Msa0101900:intron | 40.0% | |
| ! | GTTGATGGGTCAATTGATTG+TGG | - | chr1_3:8557970-8557989 | Msa0101900:intron | 40.0% |
| TGGTGAATTTGGAGATTGGA+TGG | - | chr1_3:8557990-8558009 | Msa0101900:intron | 40.0% | |
| ! | TTGGAGATTGGATGGTGTTA+TGG | - | chr1_3:8557998-8558017 | Msa0101900:intron | 40.0% |
| !! | TGGAGATTGGATGGTGTTAT+GGG | - | chr1_3:8557999-8558018 | Msa0101900:intron | 40.0% |
| ! | ATGGAGTATCTAGCATTTGG+TGG | - | chr1_3:8558093-8558112 | Msa0101900:intron | 40.0% |
| ! | TGGAGTATCTAGCATTTGGT+GGG | - | chr1_3:8558094-8558113 | Msa0101900:intron | 40.0% |
| CAAACAACCTGAAGAAACCT+TGG | - | chr1_3:8558182-8558201 | Msa0101900:intron | 40.0% | |
| TGATAAGTTCTCGTCTACCA+AGG | + | chr1_3:8558202-8558221 | None:intergenic | 40.0% | |
| TTGGTAGACGAGAACTTATC+AGG | - | chr1_3:8558201-8558220 | Msa0101900:intron | 40.0% | |
| !! | GAAGAGTATTCAGCTGAGAT+TGG | - | chr1_3:8558234-8558253 | Msa0101900:intron | 40.0% |
| CTTGAGAGAACTAGTTGCAA+CGG | - | chr1_3:8558333-8558352 | Msa0101900:intron | 40.0% | |
| CTGTTCTGTATCAAATACCC+TGG | - | chr1_3:8558368-8558387 | Msa0101900:intron | 40.0% | |
| TCATACACCAACGGAAAACA+TGG | - | chr1_3:8558616-8558635 | Msa0101900:intron | 40.0% | |
| GGTAATTGATACGCCTGAAT+TGG | - | chr1_3:8558637-8558656 | Msa0101900:intron | 40.0% | |
| GAATAGCAACATACTGCAGA+AGG | + | chr1_3:8558799-8558818 | None:intergenic | 40.0% | |
| GGTGTAAAAATGGATGAGGA+AGG | - | chr1_3:8559186-8559205 | Msa0101900:intron | 40.0% | |
| ATGCCATCCAATTTGCACAA+CGG | - | chr1_3:8559304-8559323 | Msa0101900:CDS | 40.0% | |
| ! | TTACTGTTTCTCCCTTGCTA+TGG | + | chr1_3:8559530-8559549 | None:intergenic | 40.0% |
| ! | CAATGTGTTCCAACTTGCTT+TGG | - | chr1_3:8559589-8559608 | Msa0101900:intron | 40.0% |
| ATACTGAACCCAAAGCAAGT+TGG | + | chr1_3:8559601-8559620 | None:intergenic | 40.0% | |
| !! | GAACATGAAGGCACTCATAT+AGG | + | chr1_3:8559635-8559654 | None:intergenic | 40.0% |
| CAAAACGAGGCATATTTGCA+GGG | + | chr1_3:8559846-8559865 | None:intergenic | 40.0% | |
| GTGTGATTGTATGCTTGCAT+CGG | - | chr1_3:8560147-8560166 | Msa0101900:intron | 40.0% | |
| GAGGAGGACAATATGAATGA+TGG | + | chr1_3:8560190-8560209 | None:intergenic | 40.0% | |
| ACTTGAGTCTTTCTTGGAGA+AGG | - | chr1_3:8560437-8560456 | Msa0101900:intron | 40.0% | |
| AAAGGCAAGCATAAAACGTC+AGG | - | chr1_3:8560731-8560750 | Msa0101900:CDS | 40.0% | |
| TCATCAAGAGGATACAGATG+AGG | + | chr1_3:8560866-8560885 | None:intergenic | 40.0% | |
| ! | CAATATTTTATTGGGGGTGG+GGG | - | chr1_3:8560978-8560997 | Msa0101900:intron | 40.0% |
| AATAATTGATGGAGCGCGTT+AGG | + | chr1_3:8561346-8561365 | None:intergenic | 40.0% | |
| ACATGTCACATGGAACTCTT+GGG | + | chr1_3:8561526-8561545 | None:intergenic | 40.0% | |
| AACATGTCACATGGAACTCT+TGG | + | chr1_3:8561527-8561546 | None:intergenic | 40.0% | |
| TTCCTTCAAGTCAAGTTAGG+AGG | - | chr1_3:8561587-8561606 | Msa0101900:CDS | 40.0% | |
| GTATGCTTCTTTGACCATCA+AGG | - | chr1_3:8561752-8561771 | Msa0101900:intron | 40.0% | |
| TAAAATGCATGCCTGAGGTT+AGG | - | chr1_3:8561823-8561842 | Msa0101900:CDS | 40.0% | |
| AAAATGCATGCCTGAGGTTA+GGG | - | chr1_3:8561824-8561843 | Msa0101900:CDS | 40.0% | |
| CATATCATAAGTCGCAACCT+TGG | + | chr1_3:8561996-8562015 | None:intergenic | 40.0% | |
| GCTATAGCAATACTGCATAG+TGG | - | chr1_3:8562530-8562549 | Msa0101900:intron | 40.0% | |
| CAGCATTTAGTCAAAATGGG+AGG | + | chr1_3:8562675-8562694 | None:intergenic | 40.0% | |
| ! | TACTCTGTTCAGTGTTGCTA+AGG | - | chr1_3:8562709-8562728 | Msa0101900:intron | 40.0% |
| TTGTTTGAACTTCAACCGCT+TGG | - | chr1_3:8563284-8563303 | Msa0101900:intron | 40.0% | |
| TGTTTGAACTTCAACCGCTT+GGG | - | chr1_3:8563285-8563304 | Msa0101900:intron | 40.0% | |
| GGAACACTCATGTACACATA+AGG | - | chr1_3:8563418-8563437 | Msa0101900:intron | 40.0% | |
| TGTGAAGTATATTGGCAGGT+AGG | - | chr1_3:8563499-8563518 | Msa0101900:intron | 40.0% | |
| GTGAAGTATATTGGCAGGTA+GGG | - | chr1_3:8563500-8563519 | Msa0101900:intron | 40.0% | |
| AACTCTTCTATCATGGTGAC+AGG | - | chr1_3:8563593-8563612 | Msa0101900:intron | 40.0% | |
| TTCAGTTGTACATGAGATGG+AGG | - | chr1_3:8563663-8563682 | Msa0101900:intron | 40.0% | |
| TCAGTTGTACATGAGATGGA+GGG | - | chr1_3:8563664-8563683 | Msa0101900:intron | 40.0% | |
| TGCTACAAGTGAATCAAGCA+AGG | - | chr1_3:8563711-8563730 | Msa0101900:CDS | 40.0% | |
| !! | TCTTCAGCTAGTCTTTGTTC+TGG | + | chr1_3:8563751-8563770 | None:intergenic | 40.0% |
| TTGTTCTTAGAGAGTTGCTC+AGG | + | chr1_3:8563814-8563833 | None:intergenic | 40.0% | |
| ! | CTCTAAGAACAAAAACGCCA+TGG | - | chr1_3:8563822-8563841 | Msa0101900:intron | 40.0% |
| CAATCTTCAAGCTTCATCCA+TGG | + | chr1_3:8563842-8563861 | None:intergenic | 40.0% | |
| GAAGAATGCAGAGGTTACTT+AGG | + | chr1_3:8564042-8564061 | None:intergenic | 40.0% | |
| ATGTCACCCAAGTCTTTCTC+TGG | - | chr1_3:8555844-8555863 | Msa0101900:three_prime_UTR | 45.0% | |
| CTTCGGAAGATGGTTGAACT+TGG | + | chr1_3:8555965-8555984 | None:intergenic | 45.0% | |
| TTGTGATCAGCTTCGGAAGA+TGG | + | chr1_3:8555975-8555994 | None:intergenic | 45.0% | |
| !! | AAGAATGAGAAGCACTAGCC+AGG | + | chr1_3:8556026-8556045 | None:intergenic | 45.0% |
| ! | GAGTGACAGTGTTCAAGTTC+TGG | - | chr1_3:8556311-8556330 | Msa0101900:intron | 45.0% |
| AGAATTACGGTGTAGCACTC+TGG | - | chr1_3:8556380-8556399 | Msa0101900:intron | 45.0% | |
| TGAGCTCAGAGTAGCCTAAT+TGG | + | chr1_3:8556481-8556500 | None:intergenic | 45.0% | |
| TCTAAGTTGTTGGGCAGCAA+AGG | + | chr1_3:8556536-8556555 | None:intergenic | 45.0% | |
| CTTAGATAGTGAGCGAAGCT+CGG | - | chr1_3:8556550-8556569 | Msa0101900:intron | 45.0% | |
| TTTGGATGGAGGTTTAGGAG+GGG | + | chr1_3:8556896-8556915 | None:intergenic | 45.0% | |
| GTTTGGATGGAGGTTTAGGA+GGG | + | chr1_3:8556897-8556916 | None:intergenic | 45.0% | |
| TGTTTGGATGGAGGTTTAGG+AGG | + | chr1_3:8556898-8556917 | None:intergenic | 45.0% | |
| GTGTGTTTGGATGGAGGTTT+AGG | + | chr1_3:8556901-8556920 | None:intergenic | 45.0% | |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | + | chr1_3:8556907-8556926 | None:intergenic | 45.0% |
| TCCATCCAAACACACCCTTA+AGG | - | chr1_3:8556906-8556925 | Msa0101900:intron | 45.0% | |
| ! | TCAAGCCTTAAGGGTGTGTT+TGG | + | chr1_3:8556914-8556933 | None:intergenic | 45.0% |
| AAATGAAGTGAGTGCAGAGG+AGG | - | chr1_3:8557462-8557481 | Msa0101900:intron | 45.0% | |
| ! | GTTTGCTAATGGTGTTTCCG+AGG | - | chr1_3:8557642-8557661 | Msa0101900:intron | 45.0% |
| TCTGCTGGAAGCCATTTAAC+AGG | - | chr1_3:8557757-8557776 | Msa0101900:intron | 45.0% | |
| TGTCACCAGCACCTGTTAAA+TGG | + | chr1_3:8557771-8557790 | None:intergenic | 45.0% | |
| !! | TTTAACAGGTGCTGGTGACA+AGG | - | chr1_3:8557771-8557790 | Msa0101900:intron | 45.0% |
| ! | GAGACTATTTGGAACGACGA+TGG | - | chr1_3:8557871-8557890 | Msa0101900:intron | 45.0% |
| TCACTTCCCATGAGTTTGGA+AGG | - | chr1_3:8557931-8557950 | Msa0101900:CDS | 45.0% | |
| CACTTCCCATGAGTTTGGAA+GGG | - | chr1_3:8557932-8557951 | Msa0101900:CDS | 45.0% | |
| ACTTCCCATGAGTTTGGAAG+GGG | - | chr1_3:8557933-8557952 | Msa0101900:CDS | 45.0% | |
| ! | GGGATGGAGTATCTAGCATT+TGG | - | chr1_3:8558090-8558109 | Msa0101900:intron | 45.0% |
| TCGTCTACCAAGGTTTCTTC+AGG | + | chr1_3:8558192-8558211 | None:intergenic | 45.0% | |
| ATACCTAACGACGTGATCCA+GGG | + | chr1_3:8558388-8558407 | None:intergenic | 45.0% | |
| AATACCTAACGACGTGATCC+AGG | + | chr1_3:8558389-8558408 | None:intergenic | 45.0% | |
| ATGCAGTCAAGCAACATCAG+AGG | - | chr1_3:8558589-8558608 | Msa0101900:intron | 45.0% | |
| AGAGGTCGATCATACACCAA+CGG | - | chr1_3:8558607-8558626 | Msa0101900:intron | 45.0% | |
| GAACAACATATGGCAGCTAC+TGG | + | chr1_3:8559028-8559047 | None:intergenic | 45.0% | |
| TGACGGCGATACCATTGTAT+TGG | - | chr1_3:8559053-8559072 | Msa0101900:intron | 45.0% | |
| TATCAAGCATCACGTTGTGC+AGG | - | chr1_3:8559243-8559262 | Msa0101900:intron | 45.0% | |
| TCACCGTTGTGCAAATTGGA+TGG | + | chr1_3:8559310-8559329 | None:intergenic | 45.0% | |
| CTACTCACCGTTGTGCAAAT+TGG | + | chr1_3:8559314-8559333 | None:intergenic | 45.0% | |
| ATTTGCACAACGGTGAGTAG+TGG | - | chr1_3:8559314-8559333 | Msa0101900:CDS | 45.0% | |
| TTTGCACAACGGTGAGTAGT+GGG | - | chr1_3:8559315-8559334 | Msa0101900:CDS | 45.0% | |
| GAGTGCCTTCATGTTCTCAA+TGG | - | chr1_3:8559639-8559658 | Msa0101900:intron | 45.0% | |
| CCAAAACGAGGCATATTTGC+AGG | + | chr1_3:8559847-8559866 | None:intergenic | 45.0% | |
| ! | CCTGCAAATATGCCTCGTTT+TGG | - | chr1_3:8559844-8559863 | Msa0101900:intron | 45.0% |
| CAGGGACTAAAACCAAAACG+AGG | + | chr1_3:8559859-8559878 | None:intergenic | 45.0% | |
| TTGGTCCCTGCAAATATGTC+TGG | + | chr1_3:8560063-8560082 | None:intergenic | 45.0% | |
| ATGTTACAGGTGCAGACATG+TGG | - | chr1_3:8560521-8560540 | Msa0101900:intron | 45.0% | |
| !! | AGTTGGTGACTTCTTCGTCT+TGG | - | chr1_3:8560629-8560648 | Msa0101900:CDS | 45.0% |
| CGTCTTGGCACCAAAGTTAA+AGG | - | chr1_3:8560644-8560663 | Msa0101900:CDS | 45.0% | |
| ! | TGCTATGCGCTGTTGCTTAT+TGG | - | chr1_3:8560829-8560848 | Msa0101900:intron | 45.0% |
| GGGAGATCATGATCATCAAG+AGG | + | chr1_3:8560878-8560897 | None:intergenic | 45.0% | |
| ATTCTGTCAACTGGGATGTC+AGG | - | chr1_3:8560937-8560956 | Msa0101900:intron | 45.0% | |
| ! | AGGGCAGTTGGTTAGTTAGA+GGG | - | chr1_3:8561149-8561168 | Msa0101900:intron | 45.0% |
| AAATCTTTGGCCAGAAGCAG+TGG | + | chr1_3:8561420-8561439 | None:intergenic | 45.0% | |
| TCACATGGAACTCTTGGGAT+AGG | + | chr1_3:8561521-8561540 | None:intergenic | 45.0% | |
| ! | TGCCTCCTAACTTGACTTGA+AGG | + | chr1_3:8561592-8561611 | None:intergenic | 45.0% |
| GGACAGTAAGGATTTGATCC+CGG | + | chr1_3:8561784-8561803 | None:intergenic | 45.0% | |
| TTAGAAGAGTGGGGACAGTA+AGG | + | chr1_3:8561796-8561815 | None:intergenic | 45.0% | |
| TGTCTTCCTATCTCCACCTT+GGG | - | chr1_3:8561955-8561974 | Msa0101900:CDS | 45.0% | |
| ACAATGCTTAGACCGCATGA+TGG | - | chr1_3:8562019-8562038 | Msa0101900:CDS | 45.0% | |
| CAATGCTTAGACCGCATGAT+GGG | - | chr1_3:8562020-8562039 | Msa0101900:intron | 45.0% | |
| AGCACAAGTATCTGCTGCAT+AGG | - | chr1_3:8562597-8562616 | Msa0101900:intron | 45.0% | |
| TGGAAGGAACATGACAACTC+TGG | + | chr1_3:8562744-8562763 | None:intergenic | 45.0% | |
| GAAATTACCTCTAGCGACCA+TGG | + | chr1_3:8562818-8562837 | None:intergenic | 45.0% | |
| !! | CTATAGTGTGAAGGGTGTTG+TGG | - | chr1_3:8562926-8562945 | Msa0101900:intron | 45.0% |
| AAACTCTTAGTAGGCCCAAG+CGG | + | chr1_3:8563302-8563321 | None:intergenic | 45.0% | |
| TCTTCTATCATGGTGACAGG+TGG | - | chr1_3:8563596-8563615 | Msa0101900:intron | 45.0% | |
| !! | CAGCTAGTCTTTGTTCTGGA+AGG | + | chr1_3:8563747-8563766 | None:intergenic | 45.0% |
| GGTTACTTAGGACACAAGCT+AGG | + | chr1_3:8564030-8564049 | None:intergenic | 45.0% | |
| !! | ATAAATTCAATAATATTTAT+AGG | - | chr1_3:8556956-8556975 | Msa0101900:intron | 5.0% |
| !! | ATATAAATCTTAATTATAAA+CGG | - | chr1_3:8560279-8560298 | Msa0101900:intron | 5.0% |
| !! | ATCACCGACTCCGACTATGA+AGG | - | chr1_3:8555789-8555808 | Msa0101900:three_prime_UTR | 50.0% |
| AATAGCGGCGCCTTCATAGT+CGG | + | chr1_3:8555802-8555821 | None:intergenic | 50.0% | |
| !! | AGAAGCACTAGCCAGGAATG+AGG | + | chr1_3:8556019-8556038 | None:intergenic | 50.0% |
| ATGGAGGTTTAGGAGGGGAA+GGG | + | chr1_3:8556891-8556910 | None:intergenic | 50.0% | |
| ! | GCCTTAAGGGTGTGTTTGGA+TGG | + | chr1_3:8556910-8556929 | None:intergenic | 50.0% |
| ! | ATCCTACTGTGATGGTGCAG+CGG | - | chr1_3:8557561-8557580 | Msa0101900:intron | 50.0% |
| !! | TGCTGCACTGGGTTTGCTAA+TGG | - | chr1_3:8557631-8557650 | Msa0101900:intron | 50.0% |
| ATTGCACATGCCTCGGATAC+TGG | - | chr1_3:8557730-8557749 | Msa0101900:intron | 50.0% | |
| AGCAGAGATTCCAGTATCCG+AGG | + | chr1_3:8557743-8557762 | None:intergenic | 50.0% | |
| TCGGATACTGGAATCTCTGC+TGG | - | chr1_3:8557742-8557761 | Msa0101900:intron | 50.0% | |
| GGAAGCCATTTAACAGGTGC+TGG | - | chr1_3:8557763-8557782 | Msa0101900:intron | 50.0% | |
| ! | GTGCTGGTGACAAGGTTTGT+GGG | - | chr1_3:8557779-8557798 | Msa0101900:intron | 50.0% |
| GCAACCCCTTCCAAACTCAT+GGG | + | chr1_3:8557940-8557959 | None:intergenic | 50.0% | |
| TGCAACCCCTTCCAAACTCA+TGG | + | chr1_3:8557941-8557960 | None:intergenic | 50.0% | |
| GCTAGATACTCCATCCCTGA+GGG | + | chr1_3:8558087-8558106 | None:intergenic | 50.0% | |
| TGCTAGATACTCCATCCCTG+AGG | + | chr1_3:8558088-8558107 | None:intergenic | 50.0% | |
| TGGAGTCGCTGCTGGAAATT+TGG | - | chr1_3:8558254-8558273 | Msa0101900:intron | 50.0% | |
| ATACCCTGGATCACGTCGTT+AGG | - | chr1_3:8558382-8558401 | Msa0101900:intron | 50.0% | |
| ACATCACAAAAGTGGGGCCA+GGG | + | chr1_3:8559935-8559954 | None:intergenic | 50.0% | |
| AACATCACAAAAGTGGGGCC+AGG | + | chr1_3:8559936-8559955 | None:intergenic | 50.0% | |
| ! | CAGGGCAGTTGGTTAGTTAG+AGG | - | chr1_3:8561148-8561167 | Msa0101900:intron | 50.0% |
| ! | GGGCAGTTGGTTAGTTAGAG+GGG | - | chr1_3:8561150-8561169 | Msa0101900:intron | 50.0% |
| TTGACCATCAAGGTCTCCTC+CGG | - | chr1_3:8561762-8561781 | Msa0101900:intron | 50.0% | |
| CAGTAAGGATTTGATCCCGG+AGG | + | chr1_3:8561781-8561800 | None:intergenic | 50.0% | |
| CTGTCTTCCTATCTCCACCT+TGG | - | chr1_3:8561954-8561973 | Msa0101900:CDS | 50.0% | |
| GTCTTCCTATCTCCACCTTG+GGG | - | chr1_3:8561956-8561975 | Msa0101900:CDS | 50.0% | |
| GTCGCAACCTTGGCATAATC+TGG | + | chr1_3:8561986-8562005 | None:intergenic | 50.0% | |
| GCATCTACCTACCCATCATG+CGG | + | chr1_3:8562034-8562053 | None:intergenic | 50.0% | |
| ATTACCTCTAGCGACCATGG+TGG | + | chr1_3:8562815-8562834 | None:intergenic | 50.0% | |
| GGCGCCGCTATTCAATCTCT+CGG | - | chr1_3:8555810-8555829 | Msa0101900:three_prime_UTR | 55.0% | |
| GGGTCTCCCTCTTTCCTTTC+AGG | - | chr1_3:8556195-8556214 | Msa0101900:three_prime_UTR | 55.0% | |
| GAGCTCACTAGCTGTCAGCT+TGG | - | chr1_3:8556494-8556513 | Msa0101900:intron | 55.0% | |
| AGGTTTAGGAGGGGAAGGGA+GGG | + | chr1_3:8556887-8556906 | None:intergenic | 55.0% | |
| GATGGAGGTTTAGGAGGGGA+AGG | + | chr1_3:8556892-8556911 | None:intergenic | 55.0% | |
| ACAGGGTTGCTGCAAGTACG+TGG | + | chr1_3:8557430-8557449 | None:intergenic | 55.0% | |
| TTCCGCTGCACCATCACAGT+AGG | + | chr1_3:8557566-8557585 | None:intergenic | 55.0% | |
| TGGTGCAGCGGAAGTTGACA+TGG | - | chr1_3:8557573-8557592 | Msa0101900:intron | 55.0% | |
| GACATGGCTCAATCTGTCCC+TGG | - | chr1_3:8557589-8557608 | Msa0101900:intron | 55.0% | |
| GCTCAATCTGTCCCTGGTGA+AGG | - | chr1_3:8557595-8557614 | Msa0101900:intron | 55.0% | |
| !! | GGTGCTGGTGACAAGGTTTG+TGG | - | chr1_3:8557778-8557797 | Msa0101900:intron | 55.0% |
| GATACTCCATCCCTGAGGGT+GGG | + | chr1_3:8558083-8558102 | None:intergenic | 55.0% | |
| AGATACTCCATCCCTGAGGG+TGG | + | chr1_3:8558084-8558103 | None:intergenic | 55.0% | |
| CAAGCATCACGTTGTGCAGG+TGG | - | chr1_3:8559246-8559265 | Msa0101900:CDS | 55.0% | |
| ATTGACTGTTTCACCGGCGC+TGG | - | chr1_3:8559276-8559295 | Msa0101900:CDS | 55.0% | |
| TGACCATCAAGGTCTCCTCC+GGG | - | chr1_3:8561763-8561782 | Msa0101900:intron | 55.0% | |
| ATGCATGCCTGAGGTTAGGG+TGG | - | chr1_3:8561827-8561846 | Msa0101900:CDS | 55.0% | |
| TGCATGCCTGAGGTTAGGGT+GGG | - | chr1_3:8561828-8561847 | Msa0101900:CDS | 55.0% | |
| TATAGGCCCACCCTAACCTC+AGG | + | chr1_3:8561837-8561856 | None:intergenic | 55.0% | |
| TTCCTATCTCCACCTTGGGG+TGG | - | chr1_3:8561959-8561978 | Msa0101900:CDS | 55.0% | |
| TAATCTGGTCCACCCCAAGG+TGG | + | chr1_3:8561971-8561990 | None:intergenic | 55.0% | |
| GCATAATCTGGTCCACCCCA+AGG | + | chr1_3:8561974-8561993 | None:intergenic | 55.0% | |
| GGGTGGACCAGATTATGCCA+AGG | - | chr1_3:8561976-8561995 | Msa0101900:CDS | 55.0% | |
| !! | GCTTAGACCGCATGATGGGT+AGG | - | chr1_3:8562024-8562043 | Msa0101900:intron | 55.0% |
| CTCTATCTGCCTCTCCACCA+TGG | - | chr1_3:8562798-8562817 | Msa0101900:intron | 55.0% | |
| GGCGCCTTCATAGTCGGAGT+CGG | + | chr1_3:8555796-8555815 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr1_3:8556886-8556905 | None:intergenic | 60.0% | |
| GAGGTTTAGGAGGGGAAGGG+AGG | + | chr1_3:8556888-8556907 | None:intergenic | 60.0% | |
| GCTGCAAGTACGTGGCTGCT+TGG | + | chr1_3:8557422-8557441 | None:intergenic | 60.0% | |
| !! | ACGACGATGGTGCTGCCACT+TGG | - | chr1_3:8557884-8557903 | Msa0101900:intron | 60.0% |
| GTTAGCTGGCGACTGCCAAG+TGG | + | chr1_3:8557902-8557921 | None:intergenic | 60.0% | |
| TCTACATGGGACCCACCCTC+AGG | - | chr1_3:8558069-8558088 | Msa0101900:intron | 60.0% | |
| CTACATGGGACCCACCCTCA+GGG | - | chr1_3:8558070-8558089 | Msa0101900:intron | 60.0% | |
| GCTGAGATTGGAGTCGCTGC+TGG | - | chr1_3:8558246-8558265 | Msa0101900:intron | 60.0% | |
| !! | ACTGTTTCACCGGCGCTGGT+GGG | - | chr1_3:8559280-8559299 | Msa0101900:CDS | 60.0% |
| GATCCCGGAGGAGACCTTGA+TGG | + | chr1_3:8561769-8561788 | None:intergenic | 60.0% | |
| GTCCACCCCAAGGTGGAGAT+AGG | + | chr1_3:8561964-8561983 | None:intergenic | 60.0% | |
| ! | CTCTAGCGACCATGGTGGAG+AGG | + | chr1_3:8562810-8562829 | None:intergenic | 60.0% |
| CTCTCCACCATGGTCGCTAG+AGG | - | chr1_3:8562808-8562827 | Msa0101900:intron | 60.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr1_3:8556882-8556901 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr1_3:8556883-8556902 | None:intergenic | 65.0% | |
| ATGGGACCCACCCTCAGGGA+TGG | - | chr1_3:8558074-8558093 | Msa0101900:intron | 65.0% | |
| ! | GACTGTTTCACCGGCGCTGG+TGG | - | chr1_3:8559279-8559298 | Msa0101900:CDS | 65.0% |
| GATGGCATTCCCACCAGCGC+CGG | + | chr1_3:8559292-8559311 | None:intergenic | 65.0% | |
| ! | GGGGTGGGGGAGCACATGAG+TGG | - | chr1_3:8560991-8561010 | Msa0101900:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8555783 | 8564121 | 8555783 | ID=Msa0101900;Name=Msa0101900 |
| chr1_3 | mRNA | 8555783 | 8564121 | 8555783 | ID=Msa0101900-mRNA-1;Parent=Msa0101900;Name=Msa0101900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.41|0.38|1|0.41|0.46|13|444|627 |
| chr1_3 | exon | 8555783 | 8556289 | 8555783 | ID=Msa0101900-mRNA-1:exon:3417;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8557075 | 8557198 | 8557075 | ID=Msa0101900-mRNA-1:exon:3416;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8557907 | 8557957 | 8557907 | ID=Msa0101900-mRNA-1:exon:3415;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8559246 | 8559374 | 8559246 | ID=Msa0101900-mRNA-1:exon:3414;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8560579 | 8560810 | 8560579 | ID=Msa0101900-mRNA-1:exon:3413;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8561158 | 8561327 | 8561158 | ID=Msa0101900-mRNA-1:exon:3412;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8561501 | 8561747 | 8561501 | ID=Msa0101900-mRNA-1:exon:3411;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8561793 | 8562038 | 8561793 | ID=Msa0101900-mRNA-1:exon:3410;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8562081 | 8562323 | 8562081 | ID=Msa0101900-mRNA-1:exon:3409;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8562330 | 8562525 | 8562330 | ID=Msa0101900-mRNA-1:exon:3408;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8563676 | 8563770 | 8563676 | ID=Msa0101900-mRNA-1:exon:3407;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8563939 | 8563954 | 8563939 | ID=Msa0101900-mRNA-1:exon:3406;Parent=Msa0101900-mRNA-1 |
| chr1_3 | exon | 8564050 | 8564121 | 8564050 | ID=Msa0101900-mRNA-1:exon:3405;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8564050 | 8564121 | 8564050 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8563939 | 8563954 | 8563939 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8563676 | 8563770 | 8563676 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8562330 | 8562525 | 8562330 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8562081 | 8562323 | 8562081 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8561793 | 8562038 | 8561793 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8561501 | 8561747 | 8561501 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8561158 | 8561327 | 8561158 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8560579 | 8560810 | 8560579 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8559246 | 8559374 | 8559246 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8557907 | 8557957 | 8557907 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8557075 | 8557198 | 8557075 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | CDS | 8556227 | 8556289 | 8556227 | ID=Msa0101900-mRNA-1:cds;Parent=Msa0101900-mRNA-1 |
| chr1_3 | three_prime_UTR | 8555783 | 8556226 | 8555783 | ID=Msa0101900-mRNA-1:three_prime_utr;Parent=Msa0101900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
