AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1262720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262720 MtrunA17_Chr4g0066451 98.165 218 4 0 1 218 1 218 1.13e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262720 AT4G15520.1 75.342 219 51 2 2 217 3 221 1.45e-121 344

Find 57 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTGTTCTTCATCAATT+TGG 0.169699 8_2:-65560963 Msa1262720:CDS
TGAAGATTTCTACTCTTATT+AGG 0.212920 8_2:-65558939 Msa1262720:three_prime_UTR
CTTGATGCATTATTTGTTGA+TGG 0.263222 8_2:-65559120 Msa1262720:CDS
TTAAAAGGATGTTGATTAAC+AGG 0.283978 8_2:+65561119 None:intergenic
CAATTGACGGACTGTAGTTT+AGG 0.285728 8_2:-65559067 Msa1262720:three_prime_UTR
ATCCATTTGCTCTACTGATA+TGG 0.295728 8_2:-65558801 Msa1262720:three_prime_UTR
TTTGTTTATATTCCGCAATA+TGG 0.296529 8_2:-65561023 Msa1262720:CDS
CGAAGAGATTTCAACAGTTT+CGG 0.342769 8_2:-65561263 Msa1262720:CDS
AATTGACGGACTGTAGTTTA+GGG 0.348699 8_2:-65559066 Msa1262720:three_prime_UTR
TTGCTTGGTAATGAAGGTTC+TGG 0.350744 8_2:-65561080 Msa1262720:CDS
CATTATTTGTTGATGGTTGA+TGG 0.355935 8_2:-65559113 Msa1262720:exon
AAAAGTACTGCTTTCTTGCT+TGG 0.361273 8_2:-65561095 Msa1262720:CDS
TAGAAGAGAACCGACATCTT+AGG 0.393257 8_2:-65559023 Msa1262720:three_prime_UTR
ATTGGCGGCATTCTCTCTTC+TGG 0.397261 8_2:+65559188 None:intergenic
CTTAGGTATCTAATGTGGTT+TGG 0.397267 8_2:-65559006 Msa1262720:three_prime_UTR
CAGAGTTGATGCTAACAAAA+TGG 0.414424 8_2:-65561393 Msa1262720:exon
AACCATATCAGTAGAGCAAA+TGG 0.420057 8_2:+65558799 None:intergenic
GCACGAAGCGCAACAGCATT+CGG 0.421833 8_2:-65561311 Msa1262720:CDS
GCTTTCTTGCTTGGTAATGA+AGG 0.426363 8_2:-65561086 Msa1262720:CDS
TTGTTTATATTCCGCAATAT+GGG 0.446663 8_2:-65561022 Msa1262720:CDS
ATTGTTCTTCATCAATTTGG+AGG 0.453062 8_2:-65560960 Msa1262720:intron
GCAAATGGATGTGTTATAGT+TGG 0.459860 8_2:+65558814 None:intergenic
ATTTATACAGAGGCATTAGC+TGG 0.464610 8_2:-65558963 Msa1262720:three_prime_UTR
TCGACCAACGAGGATTAGTT+CGG 0.466321 8_2:+65561283 None:intergenic
GACAAAGATTGTGACATTTG+CGG 0.478875 8_2:-65561167 Msa1262720:CDS
GGCTCTACGCTCTTCGATGA+CGG 0.492169 8_2:+65559209 None:intergenic
ATTACTTGACGATCAATTGA+CGG 0.506631 8_2:-65559080 Msa1262720:three_prime_UTR
AGCTTCTTCAAAGAAACCAT+TGG 0.515730 8_2:+65559170 None:intergenic
TATTTGTTGCAAAGAGAAAA+CGG 0.516103 8_2:+65561448 None:intergenic
TTTCGTCGACCATGTTTCAC+AGG 0.524298 8_2:+65559255 None:intergenic
TATATTCCGCAATATGGGTG+TGG 0.552488 8_2:-65561017 Msa1262720:CDS
TTCTTCAAAGAAACCATTGG+CGG 0.556928 8_2:+65559173 None:intergenic
ACGGCTACGGCGTTGCGAAA+GGG 0.563055 8_2:+65561467 None:intergenic
TTCAACAGTTTCGGTAACCA+TGG 0.567269 8_2:-65561254 Msa1262720:CDS
CAACAACTGTCACTAATGAC+AGG 0.573798 8_2:-65558887 Msa1262720:three_prime_UTR
CATCAACAAATAATGCATCA+AGG 0.584095 8_2:+65559121 None:intergenic
GGGCTTAAATGCTTTAGTTG+CGG 0.586711 8_2:-65559046 Msa1262720:three_prime_UTR
ACATTAGATACCTAAGATGT+CGG 0.596555 8_2:+65559013 None:intergenic
TTGCAAAGAGAAAACGGCTA+CGG 0.597471 8_2:+65561454 None:intergenic
AGAAGAGAGAATGCCGCCAA+TGG 0.603778 8_2:-65559186 Msa1262720:CDS
TTGTACACAACATAGCAAAA+CGG 0.606644 8_2:-65561352 Msa1262720:CDS
GACAAAGTAAATTGCACGGA+AGG 0.613588 8_2:+65561417 None:intergenic
GCAGAGAGACCTGTGAAACA+TGG 0.616817 8_2:-65559264 Msa1262720:CDS
TGCATCAAGGAGGTTTGAAG+AGG 0.620830 8_2:+65559134 None:intergenic
GTATCCGAACTAATCCTCGT+TGG 0.630687 8_2:-65561287 Msa1262720:CDS
GAAGGTGGTTTGAAGAACCA+TGG 0.643878 8_2:+65561237 None:intergenic
GACATCTTAGGTATCTAATG+TGG 0.644904 8_2:-65559011 Msa1262720:three_prime_UTR
TTATTACATAATTTATACAG+AGG 0.645843 8_2:-65558973 Msa1262720:three_prime_UTR
CTGCGACAAAGTAAATTGCA+CGG 0.660455 8_2:+65561413 None:intergenic
GAAAGTGACGAAATCGAAGG+TGG 0.672321 8_2:+65561222 None:intergenic
TGAAATCTCTTCGACCAACG+AGG 0.674642 8_2:+65561273 None:intergenic
AGTGAAAGTGACGAAATCGA+AGG 0.683890 8_2:+65561219 None:intergenic
TGGTCGACGAAATTACTGCA+CGG 0.684868 8_2:-65559244 Msa1262720:CDS
TTTGCTGAGAGATCTCGTGA+TGG 0.690113 8_2:-65559303 Msa1262720:CDS
GCAGTACCACACCCATATTG+CGG 0.695525 8_2:+65561011 None:intergenic
ATAGCAAAACGGCACAACGT+AGG 0.696815 8_2:-65561341 Msa1262720:CDS
CAACAAATAATGCATCAAGG+AGG 0.738791 8_2:+65559124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATATGCATATTTTTT+TGG + chr8_2:65560239-65560258 None:intergenic 10.0%
!!! ATCATATTTCTACATTTTTT+TGG - chr8_2:65560757-65560776 Msa1262720:intron 15.0%
!! TTATTACATAATTTATACAG+AGG - chr8_2:65561299-65561318 Msa1262720:CDS 15.0%
!!! GAAATTGATTTTGGTATATT+TGG + chr8_2:65559639-65559658 None:intergenic 20.0%
!! GGAAATGTTATTGATATATT+GGG + chr8_2:65559912-65559931 None:intergenic 20.0%
!! AGGAAATGTTATTGATATAT+TGG + chr8_2:65559913-65559932 None:intergenic 20.0%
!! TCAATTGTATGTAAGAAAAA+AGG + chr8_2:65560103-65560122 None:intergenic 20.0%
!!! TTTTTTGGAAGTACTATAAT+AGG + chr8_2:65560224-65560243 None:intergenic 20.0%
!!! AAGTTTTTAACTAAAAGAAC+TGG + chr8_2:65560323-65560342 None:intergenic 20.0%
!!! GTTCTTTTAGTTAAAAACTT+TGG - chr8_2:65560323-65560342 Msa1262720:intron 20.0%
!!! TGTTTATGTTCTCATTTTTT+TGG - chr8_2:65560715-65560734 Msa1262720:intron 20.0%
!! AACAAAATCAATATACAGTT+GGG + chr8_2:65560793-65560812 None:intergenic 20.0%
!! TATTTGTTGCAAAGAGAAAA+CGG + chr8_2:65558827-65558846 None:intergenic 25.0%
!! TTAAAAGGATGTTGATTAAC+AGG + chr8_2:65559156-65559175 None:intergenic 25.0%
!! AAAGCAGTACTTTTCTTAAA+AGG + chr8_2:65559171-65559190 None:intergenic 25.0%
! TTTGTTTATATTCCGCAATA+TGG - chr8_2:65559249-65559268 Msa1262720:CDS 25.0%
! TTGTTTATATTCCGCAATAT+GGG - chr8_2:65559250-65559269 Msa1262720:CDS 25.0%
! TCTATTGTTCTTCATCAATT+TGG - chr8_2:65559309-65559328 Msa1262720:CDS 25.0%
!!! TGATGACTTGAAATTGATTT+TGG + chr8_2:65559648-65559667 None:intergenic 25.0%
!! CTGAAAAGGTATATAAACAT+GGG + chr8_2:65559803-65559822 None:intergenic 25.0%
!! ACTGAAAAGGTATATAAACA+TGG + chr8_2:65559804-65559823 None:intergenic 25.0%
!!! CTTTTAGTTAAAAACTTTGG+TGG - chr8_2:65560326-65560345 Msa1262720:intron 25.0%
!! TGATTAAATGTCTGTTTCTT+TGG - chr8_2:65560528-65560547 Msa1262720:intron 25.0%
!!! AACGTAAATTAGTTTGTTAC+TGG - chr8_2:65560621-65560640 Msa1262720:intron 25.0%
! ATGAGAACATAAACAACAAA+GGG + chr8_2:65560710-65560729 None:intergenic 25.0%
! AATGAGAACATAAACAACAA+AGG + chr8_2:65560711-65560730 None:intergenic 25.0%
! CAACAAAATCAATATACAGT+TGG + chr8_2:65560794-65560813 None:intergenic 25.0%
! TTAAGTAAAAAGATGCAGTT+AGG + chr8_2:65560849-65560868 None:intergenic 25.0%
! AACCAATATCATAATGAATG+AGG + chr8_2:65560876-65560895 None:intergenic 25.0%
! TGAAGATTTCTACTCTTATT+AGG - chr8_2:65561333-65561352 Msa1262720:CDS 25.0%
TTGTACACAACATAGCAAAA+CGG - chr8_2:65558920-65558939 Msa1262720:three_prime_UTR 30.0%
ATTGTTCTTCATCAATTTGG+AGG - chr8_2:65559312-65559331 Msa1262720:CDS 30.0%
! GTTGTGGTGATATTTTATGT+AGG - chr8_2:65559406-65559425 Msa1262720:intron 30.0%
!! TAACCTGCAAAAGTTGATTT+TGG - chr8_2:65559436-65559455 Msa1262720:intron 30.0%
AAGAGAAAACGATTTATGTC+TGG - chr8_2:65559486-65559505 Msa1262720:intron 30.0%
!! AAGTCATCAGAATCACTTTT+GGG - chr8_2:65559659-65559678 Msa1262720:intron 30.0%
CAAAAATCTAAGTGCAAGTT+CGG + chr8_2:65559701-65559720 None:intergenic 30.0%
! GAACTTGCACTTAGATTTTT+GGG - chr8_2:65559700-65559719 Msa1262720:intron 30.0%
TAACATTCAACTACCAACTT+GGG - chr8_2:65559768-65559787 Msa1262720:intron 30.0%
AGGATTCATGAAAACTGAAA+AGG + chr8_2:65559817-65559836 None:intergenic 30.0%
!! ATCAGTTGGTGAAGAAAATA+GGG - chr8_2:65559854-65559873 Msa1262720:intron 30.0%
!! AGTGTTGCTTCTTAATATTG+AGG - chr8_2:65559944-65559963 Msa1262720:intron 30.0%
!! GTGTTGCTTCTTAATATTGA+GGG - chr8_2:65559945-65559964 Msa1262720:intron 30.0%
! CTTAATATTGAGGGACATTT+TGG - chr8_2:65559954-65559973 Msa1262720:intron 30.0%
TTAGTTAAAAACTTTGGTGG+TGG - chr8_2:65560329-65560348 Msa1262720:intron 30.0%
TTAATCACAAGAAGACAACT+CGG + chr8_2:65560515-65560534 None:intergenic 30.0%
GTCATATGTTATCACTTACA+AGG + chr8_2:65560653-65560672 None:intergenic 30.0%
ATAACATATGACTACTGTAG+TGG - chr8_2:65560661-65560680 Msa1262720:intron 30.0%
CACCTCATTCATTATGATAT+TGG - chr8_2:65560871-65560890 Msa1262720:intron 30.0%
CATCAACAAATAATGCATCA+AGG + chr8_2:65561154-65561173 None:intergenic 30.0%
! CTTGATGCATTATTTGTTGA+TGG - chr8_2:65561152-65561171 Msa1262720:CDS 30.0%
!! CATTATTTGTTGATGGTTGA+TGG - chr8_2:65561159-65561178 Msa1262720:CDS 30.0%
ATTACTTGACGATCAATTGA+CGG - chr8_2:65561192-65561211 Msa1262720:CDS 30.0%
ACATTAGATACCTAAGATGT+CGG + chr8_2:65561262-65561281 None:intergenic 30.0%
!! CAGAGTTGATGCTAACAAAA+TGG - chr8_2:65558879-65558898 Msa1262720:three_prime_UTR 35.0%
CGAAGAGATTTCAACAGTTT+CGG - chr8_2:65559009-65559028 Msa1262720:three_prime_UTR 35.0%
GACAAAGATTGTGACATTTG+CGG - chr8_2:65559105-65559124 Msa1262720:exon 35.0%
!! AAAAGTACTGCTTTCTTGCT+TGG - chr8_2:65559177-65559196 Msa1262720:CDS 35.0%
! CAACCAAAATCAACTTTTGC+AGG + chr8_2:65559442-65559461 None:intergenic 35.0%
GATTTATGTCTGGATACTCT+CGG - chr8_2:65559496-65559515 Msa1262720:intron 35.0%
ATTTATGTCTGGATACTCTC+GGG - chr8_2:65559497-65559516 Msa1262720:intron 35.0%
! CAAGTCATCAGAATCACTTT+TGG - chr8_2:65559658-65559677 Msa1262720:intron 35.0%
! CGAACTTGCACTTAGATTTT+TGG - chr8_2:65559699-65559718 Msa1262720:intron 35.0%
! TTGGGAGACTAGATTCATTT+TGG - chr8_2:65559718-65559737 Msa1262720:intron 35.0%
! TGGGAGACTAGATTCATTTT+GGG - chr8_2:65559719-65559738 Msa1262720:intron 35.0%
!! TAGATTCATTTTGGGAGGTT+TGG - chr8_2:65559727-65559746 Msa1262720:intron 35.0%
CTAACATTCAACTACCAACT+TGG - chr8_2:65559767-65559786 Msa1262720:intron 35.0%
GATCTCACAAGGAAAACTTA+AGG + chr8_2:65559837-65559856 None:intergenic 35.0%
!! GATCAGTTGGTGAAGAAAAT+AGG - chr8_2:65559853-65559872 Msa1262720:intron 35.0%
! TTCATCGAAGGACATTTTGT+CGG - chr8_2:65560003-65560022 Msa1262720:intron 35.0%
GACTTATTTCAACTGCTTTG+CGG - chr8_2:65560121-65560140 Msa1262720:intron 35.0%
! ATAGTGTTGAAGGCAAATAG+CGG + chr8_2:65560150-65560169 None:intergenic 35.0%
! CATGTAGCATATAGTGTTGA+AGG + chr8_2:65560160-65560179 None:intergenic 35.0%
CAACACTATATGCTACATGA+CGG - chr8_2:65560161-65560180 Msa1262720:intron 35.0%
!! TATGCTACATGACGGATATT+TGG - chr8_2:65560169-65560188 Msa1262720:intron 35.0%
AACTAAAAGAACTGGCTACA+AGG + chr8_2:65560315-65560334 None:intergenic 35.0%
!!! GTTTTTGAGTTCTCTTAGTC+TGG - chr8_2:65560382-65560401 Msa1262720:intron 35.0%
ACAAAACTCCCATAATGACA+AGG + chr8_2:65560488-65560507 None:intergenic 35.0%
TCAATATACAGTTGGGAATG+AGG + chr8_2:65560786-65560805 None:intergenic 35.0%
!!! TTCTGATGCGTTCCTTTTTT+TGG - chr8_2:65560931-65560950 Msa1262720:intron 35.0%
!!! TTCCTTTTTTTGGTCAGTCT+GGG - chr8_2:65560941-65560960 Msa1262720:intron 35.0%
TTCTTCAAAGAAACCATTGG+CGG + chr8_2:65561102-65561121 None:intergenic 35.0%
AGCTTCTTCAAAGAAACCAT+TGG + chr8_2:65561105-65561124 None:intergenic 35.0%
CAACAAATAATGCATCAAGG+AGG + chr8_2:65561151-65561170 None:intergenic 35.0%
!! AATTGACGGACTGTAGTTTA+GGG - chr8_2:65561206-65561225 Msa1262720:CDS 35.0%
GACATCTTAGGTATCTAATG+TGG - chr8_2:65561261-65561280 Msa1262720:CDS 35.0%
CTTAGGTATCTAATGTGGTT+TGG - chr8_2:65561266-65561285 Msa1262720:CDS 35.0%
!! ATTTATACAGAGGCATTAGC+TGG - chr8_2:65561309-65561328 Msa1262720:CDS 35.0%
GCAAATGGATGTGTTATAGT+TGG + chr8_2:65561461-65561480 None:intergenic 35.0%
ATCCATTTGCTCTACTGATA+TGG - chr8_2:65561471-65561490 Msa1262720:five_prime_UTR 35.0%
AACCATATCAGTAGAGCAAA+TGG + chr8_2:65561476-65561495 None:intergenic 35.0%
TTGCAAAGAGAAAACGGCTA+CGG + chr8_2:65558821-65558840 None:intergenic 40.0%
GACAAAGTAAATTGCACGGA+AGG + chr8_2:65558858-65558877 None:intergenic 40.0%
CTGCGACAAAGTAAATTGCA+CGG + chr8_2:65558862-65558881 None:intergenic 40.0%
TTCAACAGTTTCGGTAACCA+TGG - chr8_2:65559018-65559037 Msa1262720:three_prime_UTR 40.0%
AGTGAAAGTGACGAAATCGA+AGG + chr8_2:65559056-65559075 None:intergenic 40.0%
!! GCTTTCTTGCTTGGTAATGA+AGG - chr8_2:65559186-65559205 Msa1262720:CDS 40.0%
!! TTGCTTGGTAATGAAGGTTC+TGG - chr8_2:65559192-65559211 Msa1262720:CDS 40.0%
TATATTCCGCAATATGGGTG+TGG - chr8_2:65559255-65559274 Msa1262720:CDS 40.0%
TTCGCGATAAAAGAACGTTG+TGG - chr8_2:65559390-65559409 Msa1262720:intron 40.0%
TTGAGTGTCTGAATCACGTT+TGG - chr8_2:65559543-65559562 Msa1262720:intron 40.0%
!! GCAAGTTCGGATTCACTTTT+CGG + chr8_2:65559688-65559707 None:intergenic 40.0%
! GAGACTAGATTCATTTTGGG+AGG - chr8_2:65559722-65559741 Msa1262720:intron 40.0%
! GTTTTCCTTGTGAGATCAGT+TGG - chr8_2:65559840-65559859 Msa1262720:intron 40.0%
TGAAGAAAATAGGGAGTTGC+TGG - chr8_2:65559863-65559882 Msa1262720:intron 40.0%
AGCAACACTCACTCGTAAAA+AGG + chr8_2:65559933-65559952 None:intergenic 40.0%
!! TATTGAGGGACATTTTGGTG+TGG - chr8_2:65559959-65559978 Msa1262720:intron 40.0%
!! ATTGAGGGACATTTTGGTGT+GGG - chr8_2:65559960-65559979 Msa1262720:intron 40.0%
TTGGTGTGGGATTGAATATG+AGG - chr8_2:65559973-65559992 Msa1262720:intron 40.0%
TGAGGTGAAAAGTTCATCGA+AGG - chr8_2:65559991-65560010 Msa1262720:intron 40.0%
AGCGGAAAAGAGAGAATTTC+TGG - chr8_2:65560033-65560052 Msa1262720:intron 40.0%
GCGGAAAAGAGAGAATTTCT+GGG - chr8_2:65560034-65560053 Msa1262720:intron 40.0%
TTCTCTTAGTCTGGTTGAAG+TGG - chr8_2:65560391-65560410 Msa1262720:intron 40.0%
TGTGATGAAAATGTCCCGAT+GGG - chr8_2:65560445-65560464 Msa1262720:intron 40.0%
TAATGACAAGGTTTGGGGAA+GGG + chr8_2:65560476-65560495 None:intergenic 40.0%
ATAATGACAAGGTTTGGGGA+AGG + chr8_2:65560477-65560496 None:intergenic 40.0%
TTCCCCAAACCTTGTCATTA+TGG - chr8_2:65560476-65560495 Msa1262720:intron 40.0%
TCCCCAAACCTTGTCATTAT+GGG - chr8_2:65560477-65560496 Msa1262720:intron 40.0%
TCCCATAATGACAAGGTTTG+GGG + chr8_2:65560481-65560500 None:intergenic 40.0%
CTCCCATAATGACAAGGTTT+GGG + chr8_2:65560482-65560501 None:intergenic 40.0%
ACTCCCATAATGACAAGGTT+TGG + chr8_2:65560483-65560502 None:intergenic 40.0%
! CTGTAGTGGTACATCCTTTT+TGG - chr8_2:65560675-65560694 Msa1262720:intron 40.0%
AAGGGAACACAGATCCAAAA+AGG + chr8_2:65560692-65560711 None:intergenic 40.0%
!!! GTTCCTTTTTTTGGTCAGTC+TGG - chr8_2:65560940-65560959 Msa1262720:intron 40.0%
!! CAATTGACGGACTGTAGTTT+AGG - chr8_2:65561205-65561224 Msa1262720:CDS 40.0%
GGGCTTAAATGCTTTAGTTG+CGG - chr8_2:65561226-65561245 Msa1262720:CDS 40.0%
TAGAAGAGAACCGACATCTT+AGG - chr8_2:65561249-65561268 Msa1262720:CDS 40.0%
CAACAACTGTCACTAATGAC+AGG - chr8_2:65561385-65561404 Msa1262720:exon 40.0%
ATAGCAAAACGGCACAACGT+AGG - chr8_2:65558931-65558950 Msa1262720:three_prime_UTR 45.0%
GTATCCGAACTAATCCTCGT+TGG - chr8_2:65558985-65559004 Msa1262720:three_prime_UTR 45.0%
!! TCGACCAACGAGGATTAGTT+CGG + chr8_2:65558992-65559011 None:intergenic 45.0%
TGAAATCTCTTCGACCAACG+AGG + chr8_2:65559002-65559021 None:intergenic 45.0%
GAAGGTGGTTTGAAGAACCA+TGG + chr8_2:65559038-65559057 None:intergenic 45.0%
GAAAGTGACGAAATCGAAGG+TGG + chr8_2:65559053-65559072 None:intergenic 45.0%
!!! TCATTTTGGGAGGTTTGGTG+TGG - chr8_2:65559732-65559751 Msa1262720:intron 45.0%
CATTCAACTACCAACTTGGG+AGG - chr8_2:65559771-65559790 Msa1262720:intron 45.0%
TGGGATAAATCCTCCCAAGT+TGG + chr8_2:65559784-65559803 None:intergenic 45.0%
CTTCACCAACTGATCTCACA+AGG + chr8_2:65559848-65559867 None:intergenic 45.0%
! ATCGAAGGACATTTTGTCGG+TGG - chr8_2:65560006-65560025 Msa1262720:intron 45.0%
! CATTTTGTCGGTGGATGTAG+CGG - chr8_2:65560015-65560034 Msa1262720:intron 45.0%
GTGTGATGAAAATGTCCCGA+TGG - chr8_2:65560444-65560463 Msa1262720:intron 45.0%
GCAGTGTGCAAACTGGAATT+AGG + chr8_2:65560577-65560596 None:intergenic 45.0%
ATTCCAGTTTGCACACTGCT+TGG - chr8_2:65560578-65560597 Msa1262720:intron 45.0%
TGCCCAGACTGACCAAAAAA+AGG + chr8_2:65560946-65560965 None:intergenic 45.0%
!!! TTTTTTTGGTCAGTCTGGGC+AGG - chr8_2:65560945-65560964 Msa1262720:intron 45.0%
TTTGCTGAGAGATCTCGTGA+TGG - chr8_2:65560969-65560988 Msa1262720:CDS 45.0%
TTTCGTCGACCATGTTTCAC+AGG + chr8_2:65561020-65561039 None:intergenic 45.0%
TGGTCGACGAAATTACTGCA+CGG - chr8_2:65561028-65561047 Msa1262720:CDS 45.0%
TGCATCAAGGAGGTTTGAAG+AGG + chr8_2:65561141-65561160 None:intergenic 45.0%
GCAGTACCACACCCATATTG+CGG + chr8_2:65559264-65559283 None:intergenic 50.0%
TGGATACTCTCGGGTGAAAG+TGG - chr8_2:65559506-65559525 Msa1262720:intron 50.0%
GGATACTCTCGGGTGAAAGT+GGG - chr8_2:65559507-65559526 Msa1262720:intron 50.0%
CATCCAAGCAGTGTGCAAAC+TGG + chr8_2:65560584-65560603 None:intergenic 50.0%
GCAGAGAGACCTGTGAAACA+TGG - chr8_2:65561008-65561027 Msa1262720:CDS 50.0%
ATTGGCGGCATTCTCTCTTC+TGG + chr8_2:65561087-65561106 None:intergenic 50.0%
AGAAGAGAGAATGCCGCCAA+TGG - chr8_2:65561086-65561105 Msa1262720:CDS 50.0%
GCACGAAGCGCAACAGCATT+CGG - chr8_2:65558961-65558980 Msa1262720:three_prime_UTR 55.0%
GGCTCTACGCTCTTCGATGA+CGG + chr8_2:65561066-65561085 None:intergenic 55.0%
ACGGCTACGGCGTTGCGAAA+GGG + chr8_2:65558808-65558827 None:intergenic 60.0%
AACGGCTACGGCGTTGCGAA+AGG + chr8_2:65558809-65558828 None:intergenic 60.0%
TGGGGAAGGGTCAAGCCCAT+CGG + chr8_2:65560463-65560482 None:intergenic 60.0%
GGGGAAGGGTCAAGCCCATC+GGG + chr8_2:65560462-65560481 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 65558792 65561502 65558792 ID=Msa1262720;Name=Msa1262720
chr8_2 mRNA 65558792 65561502 65558792 ID=Msa1262720-mRNA-1;Parent=Msa1262720;Name=Msa1262720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|1|1|2|324|218
chr8_2 exon 65558792 65559336 65558792 ID=Msa1262720-mRNA-1:exon:21301;Parent=Msa1262720-mRNA-1
chr8_2 exon 65560961 65561502 65560961 ID=Msa1262720-mRNA-1:exon:21300;Parent=Msa1262720-mRNA-1
chr8_2 five_prime_UTR 65561397 65561502 65561397 ID=Msa1262720-mRNA-1:five_prime_utr;Parent=Msa1262720-mRNA-1
chr8_2 CDS 65560961 65561396 65560961 ID=Msa1262720-mRNA-1:cds;Parent=Msa1262720-mRNA-1
chr8_2 CDS 65559116 65559336 65559116 ID=Msa1262720-mRNA-1:cds;Parent=Msa1262720-mRNA-1
chr8_2 three_prime_UTR 65558792 65559115 65558792 ID=Msa1262720-mRNA-1:three_prime_utr;Parent=Msa1262720-mRNA-1
Gene Sequence

>Msa1262720

ATGGCGTTTGAAAGCTATGTAGTTGTACACAACATAGCAAAACGGCACAACGTAGGAACACTAGCACGAAGCGCAACAGCATTCGGCGTATCCGAACTAATCCTCGTTGGTCGAAGAGATTTCAACAGTTTCGGTAACCATGGTTCTTCAAACCACCTTCGATTTCGTCACTTTCACTCACTTCAAGACGCTAAACAATTTCTCAAAGACAAAGATTGTGACATTTGCGGCGTCGAGATCACACACGATGCTCTTCCTGTTAATCAACATCCTTTTAAGAAAAGTACTGCTTTCTTGCTTGGTAATGAAGGTTCTGGTCTTTCGACGAAAGAGTGTGAGATTTGTGATTTTTTTGTTTATATTCCGCAATATGGGTGTGGTACTGCTTCGTTGAATGTTACTGTTGCTGCTTCTATTGTTCTTCATCAATTTGGAGTCTGGGCAGGTTTTGCTGAGAGATCTCGTGATGGAAATAAATTTGTTGTAGCAGAGAGACCTGTGAAACATGGTCGACGAAATTACTGCACGGAAACAGATGATTCCGTCATCGAAGAGCGTAGAGCCAGAAGAGAGAATGCCGCCAATGGTTTCTTTGAAGAAGCTGAGAGTAGCAATTCCTCTTCAAACCTCCTTGATGCATTATTTGTTGATGGTTGA

Protein sequence

>Msa1262720

MAFESYVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNSFGNHGSSNHLRFRHFHSLQDAKQFLKDKDCDICGVEITHDALPVNQHPFKKSTAFLLGNEGSGLSTKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFAERSRDGNKFVVAERPVKHGRRNYCTETDDSVIEERRARRENAANGFFEEAESSNSSSNLLDALFVDG*