AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027230 MtrunA17_Chr1g0183311 93.371 890 59 0 1 890 1 890 0.0 1655
Msa0027230 MtrunA17_Chr1g0211711 79.540 782 113 6 119 890 315 1059 0.0 1273
Msa0027230 MtrunA17_Chr5g0426961 67.754 797 188 7 99 883 97 836 0.0 1063
Msa0027230 MtrunA17_Chr1g0211691 68.407 747 177 8 43 770 239 945 0.0 995
Msa0027230 MtrunA17_Chr1g0211661 69.120 693 169 5 130 822 218 865 0.0 971
Msa0027230 MtrunA17_Chr5g0420361 68.986 661 182 8 207 863 138 779 0.0 912
Msa0027230 MtrunA17_Chr6g0472441 65.185 675 185 11 207 875 80 710 0.0 858
Msa0027230 MtrunA17_Chr7g0275771 43.228 886 402 23 91 888 61 933 0.0 666
Msa0027230 MtrunA17_Chr5g0448301 59.786 562 165 4 233 792 129 631 0.0 649
Msa0027230 MtrunA17_Chr4g0075261 47.122 747 334 15 144 879 168 864 0.0 639
Msa0027230 MtrunA17_Chr2g0289121 47.568 740 310 13 143 879 155 819 0.0 619
Msa0027230 MtrunA17_Chr1g0192011 37.550 751 399 20 144 880 267 961 1.45e-147 461
Msa0027230 MtrunA17_Chr2g0289031 51.508 431 162 3 451 879 8 393 1.00e-141 426
Msa0027230 MtrunA17_Chr1g0147021 45.506 534 254 11 140 669 866 1366 2.56e-132 435
Msa0027230 MtrunA17_Chr1g0147021 72.059 136 38 0 735 870 1551 1686 1.60e-58 218
Msa0027230 MtrunA17_Chr2g0281051 34.275 779 448 15 144 884 207 959 6.95e-131 416
Msa0027230 MtrunA17_Chr2g0289091 47.368 399 130 10 525 844 23 420 2.93e-100 319
Msa0027230 MtrunA17_Chr4g0048531 37.077 561 296 14 367 880 727 1277 5.90e-98 333
Msa0027230 MtrunA17_Chr4g0048531 32.127 221 108 5 139 338 255 454 3.43e-27 119
Msa0027230 MtrunA17_Chr8g0364421 50.195 257 96 4 254 510 5 229 3.85e-70 231
Msa0027230 MtrunA17_Chr1g0211701 77.236 123 28 0 768 890 4 126 2.90e-64 213
Msa0027230 MtrunA17_Chr8g0340381 70.414 169 31 3 546 714 36 185 1.78e-61 206
Msa0027230 MtrunA17_Chr7g0231061 61.585 164 63 0 512 675 12 175 2.26e-59 201
Msa0027230 MtrunA17_Chr8g0361381 51.337 187 87 1 447 633 26 208 4.78e-58 197
Msa0027230 MtrunA17_Chr8g0361391 77.528 89 19 1 734 822 50 137 1.46e-42 152
Msa0027230 MtrunA17_Chr2g0289041 41.038 212 115 4 166 376 2 204 1.83e-42 154
Msa0027230 MtrunA17_Chr8g0364411 50.350 143 65 2 113 255 8 144 7.09e-37 135
Msa0027230 MtrunA17_Chr1g0211671 77.419 62 14 0 821 882 15 76 1.89e-27 108
Msa0027230 MtrunA17_Chr3g0119761 62.338 77 29 0 619 695 55 131 2.86e-22 93.6
Msa0027230 MtrunA17_Chr2g0289101 38.095 147 81 5 276 418 8 148 3.03e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027230 AT3G07610.1 43.492 922 399 11 27 885 35 897 0.0 713
Msa0027230 AT3G07610.3 42.295 941 405 12 27 885 35 919 0.0 692
Msa0027230 AT1G11950.1 48.988 741 308 13 144 879 193 868 0.0 687
Msa0027230 AT1G11950.3 48.988 741 308 13 144 879 193 868 0.0 687
Msa0027230 AT1G62310.1 49.108 729 313 12 144 868 209 883 0.0 678
Msa0027230 AT4G00990.1 43.846 780 368 16 142 879 78 829 0.0 605
Msa0027230 AT1G11950.2 46.736 674 289 13 144 812 193 801 0.0 583
Msa0027230 AT4G00990.3 42.661 729 348 16 142 828 78 778 1.36e-179 538
Msa0027230 AT4G00990.2 42.996 721 341 16 142 820 78 770 1.36e-178 535
Msa0027230 AT3G07610.2 40.237 676 321 9 27 639 35 690 4.61e-153 469
Msa0027230 AT1G09060.2 32.322 758 420 17 144 880 206 891 4.76e-116 376
Msa0027230 AT1G09060.1 32.322 758 420 17 144 880 206 891 4.76e-116 376
Msa0027230 AT1G09060.4 32.322 758 420 17 144 880 220 905 8.72e-116 376
Msa0027230 AT1G09060.3 32.322 758 420 17 144 880 220 905 8.72e-116 376
Msa0027230 AT4G21430.1 30.504 754 460 12 140 886 223 919 2.06e-99 332

Find 236 sgRNAs with CRISPR-Local

Find 580 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGTCATTGTTGGTTTC+TGG 0.066287 1_1:+51475978 None:intergenic
TTTAAATATTCTTCCAATTT+AGG 0.124269 1_1:+51472704 None:intergenic
TTGCTCATATGAAGCCTTTA+TGG 0.181249 1_1:+51472880 None:intergenic
AGTACATTGCTGACAATTAT+AGG 0.182829 1_1:+51474833 None:intergenic
TGATAAAGAAAATAGTTTAT+TGG 0.211724 1_1:-51472783 Msa0027230:CDS
TCATACTCGTCTTTAATTTC+AGG 0.227847 1_1:-51477736 Msa0027230:five_prime_UTR
TCACAGCTTTAAACATAATA+AGG 0.229078 1_1:+51477698 None:intergenic
GCTATGGTTTCTTGATTATC+AGG 0.232645 1_1:+51477508 None:intergenic
AATTTGCACCAATTCTTTAC+TGG 0.236831 1_1:-51473886 Msa0027230:CDS
TGTTTGTAGTGTTTGAAAAT+TGG 0.263463 1_1:+51477625 None:intergenic
GAGAGAGGATGTACCTAAAT+TGG 0.270507 1_1:-51472717 Msa0027230:CDS
GTCCTTATTGGTCTGTAATA+AGG 0.273383 1_1:-51477055 Msa0027230:CDS
TCTGCAGACTTGTGATTTAC+TGG 0.286546 1_1:+51471082 None:intergenic
TTTCTGCCACGTTTCTTTGC+CGG 0.291268 1_1:+51477448 None:intergenic
AGTGTTCGATTTGTGGAAAA+TGG 0.293306 1_1:-51472854 Msa0027230:CDS
TGAAGTGAAGCTGGATTCTA+AGG 0.294563 1_1:-51473020 Msa0027230:CDS
ACAGCATCCTGGACATTTCT+TGG 0.294851 1_1:+51476147 None:intergenic
GATTGAAGATGTGTCCTTAT+TGG 0.294904 1_1:-51477067 Msa0027230:CDS
TCACAATCATCATCGGCTTT+TGG 0.295247 1_1:+51475145 None:intergenic
CTTCGTGGTGGGAAGCTTCT+AGG 0.295572 1_1:-51475343 Msa0027230:CDS
CTCGGCTGGACTGGCTTAAT+TGG 0.295795 1_1:-51473852 Msa0027230:CDS
AAAGTTTATAACGTTATTAT+CGG 0.305847 1_1:-51477779 Msa0027230:five_prime_UTR
TGTTGCTGTTCAATGCATTC+AGG 0.310113 1_1:+51477211 None:intergenic
GCTGGAACTGAAGAAGATTA+AGG 0.321087 1_1:-51477314 Msa0027230:CDS
ATCCTCATGACGTAGATTTA+CGG 0.327624 1_1:+51474892 None:intergenic
TATGTTATACCTTCAGATTT+CGG 0.328391 1_1:+51471603 None:intergenic
TAATTCATCTTCTTCCATAA+AGG 0.328727 1_1:-51472894 Msa0027230:CDS
AAGAAAATAGTTTATTGGTT+GGG 0.336358 1_1:-51472778 Msa0027230:CDS
GTGCCAGACATAACAAAATA+TGG 0.337395 1_1:+51470126 None:intergenic
TTTGTCTCTCCTGAAAATAT+TGG 0.339057 1_1:-51471142 Msa0027230:CDS
TCTGGCTGTAAAACATCTTT+AGG 0.339519 1_1:+51473682 None:intergenic
GCAAAATAGTGTTCGATTTG+TGG 0.347280 1_1:-51472861 Msa0027230:CDS
ATTATCAAGCATGTCAATCT+TGG 0.359732 1_1:+51472913 None:intergenic
AGAAGCATTTCAGAGAGTTC+AGG 0.360974 1_1:-51472682 Msa0027230:CDS
AACGGAGAAGGAAGCCGAAA+AGG 0.363667 1_1:-51477419 Msa0027230:CDS
TTATCAACTTCTTTGAGCTC+TGG 0.364253 1_1:+51472800 None:intergenic
CTTTCCTCAAATAAATTAGA+AGG 0.368022 1_1:+51473799 None:intergenic
AAGAGGCTTAAGGAGGAGTA+TGG 0.382059 1_1:-51471798 Msa0027230:intron
ATTCTTTAGACGGTGCTCTC+TGG 0.384591 1_1:-51472751 Msa0027230:CDS
AGAAAATAGTTTATTGGTTG+GGG 0.387608 1_1:-51472777 Msa0027230:CDS
TAAATTTGAGTCGCGTAGTT+AGG 0.387882 1_1:-51470195 Msa0027230:three_prime_UTR
TATGGATTTGCTCAGGAGCT+TGG 0.388333 1_1:-51473634 Msa0027230:CDS
GTGCTCTCTGGGATATCTTT+CGG 0.394357 1_1:-51472739 Msa0027230:CDS
AAACAATATATGACTTGTAA+TGG 0.397925 1_1:-51470083 Msa0027230:three_prime_UTR
GGGAGCTACATGGTGATAAT+CGG 0.399614 1_1:-51472946 Msa0027230:CDS
GCCTCCTTCTAATTTATTTG+AGG 0.400880 1_1:-51473803 Msa0027230:CDS
ATTTGCTCAGGAGCTTGGGC+GGG 0.402390 1_1:-51473629 Msa0027230:CDS
CAAGTCTGCAGAGGACAAAT+TGG 0.404949 1_1:-51471071 Msa0027230:CDS
TGTGAAAACTATTGATTGCT+TGG 0.405542 1_1:-51474720 Msa0027230:CDS
TGTATCTCAGAGATTGAATC+TGG 0.410142 1_1:-51470227 Msa0027230:three_prime_UTR
ATACCTTCAGATTTCGGACT+TGG 0.410789 1_1:+51471609 None:intergenic
TTCAATGGCACTGGAGCAAA+GGG 0.413215 1_1:-51474859 Msa0027230:CDS
GTAGTTAGGTGTGGTGATCT+TGG 0.415690 1_1:-51470181 Msa0027230:three_prime_UTR
CTCAACCTCATGGTCATTGT+TGG 0.418130 1_1:+51475971 None:intergenic
TTTGCTCAGGAGCTTGGGCG+GGG 0.418489 1_1:-51473628 Msa0027230:CDS
ATGGATTTGCTCAGGAGCTT+GGG 0.418850 1_1:-51473633 Msa0027230:CDS
TACATACCAACTGTTAATAC+AGG 0.419767 1_1:+51476948 None:intergenic
AACTAATGTGGAGGAGGAGC+TGG 0.421014 1_1:-51477332 Msa0027230:CDS
AATGTACTTGAATGTACATC+AGG 0.426491 1_1:-51474818 Msa0027230:CDS
GTCCTTATTACAGACCAATA+AGG 0.427034 1_1:+51477053 None:intergenic
TCATCCAATCGTCTTAAATA+CGG 0.427692 1_1:+51475918 None:intergenic
TCAAATAAAACGTCTGATCA+TGG 0.431981 1_1:+51471835 None:intergenic
TATGAACTCGGCACAATGAC+GGG 0.437450 1_1:+51473771 None:intergenic
TTTGAAAATTGGAATGTAAA+CGG 0.438366 1_1:+51477636 None:intergenic
ACACAAAGGCTCGGCTGGAC+TGG 0.438875 1_1:-51473861 Msa0027230:CDS
AACAACACAGTTGCTTTCAC+AGG 0.439858 1_1:-51477544 Msa0027230:CDS
CTTGTAATGGTGTTCTTACA+AGG 0.441246 1_1:-51470070 Msa0027230:three_prime_UTR
CTGGAACTGAAGAAGATTAA+GGG 0.442023 1_1:-51477313 Msa0027230:CDS
TTCTTTAGACGGTGCTCTCT+GGG 0.443773 1_1:-51472750 Msa0027230:CDS
TGGGTACACAAAGGCTCGGC+TGG 0.444045 1_1:-51473866 Msa0027230:CDS
GGACTGGCTTAATTGGCCTC+AGG 0.444813 1_1:-51473845 Msa0027230:CDS
TTGCAATTGCAAAGCATGCT+TGG 0.446682 1_1:-51476119 Msa0027230:CDS
TTGTGTACCCAGTAAAGAAT+TGG 0.446939 1_1:+51473878 None:intergenic
TCTTGACCATTCACGAATCT+CGG 0.449180 1_1:+51475207 None:intergenic
AATGTACATCAGGTTTAAGC+TGG 0.453673 1_1:-51474808 Msa0027230:CDS
GACAAAATCAAGTGCAACCT+TGG 0.456526 1_1:+51471159 None:intergenic
TGAGAAGGAGTGAGCGTGCT+AGG 0.457513 1_1:-51477387 Msa0027230:CDS
ATGTCAGATGCATTCAAAAC+AGG 0.458193 1_1:+51474983 None:intergenic
AGGAAGAAGAAGGTGGCAAT+TGG 0.459943 1_1:-51477280 Msa0027230:CDS
TGAAATGCACGGAATGCAAC+CGG 0.461269 1_1:-51476987 Msa0027230:CDS
GAAGTATGCTTCTCAGTTCA+AGG 0.462341 1_1:+51475113 None:intergenic
CTTTGTTGCTGCGAGCTTCG+TGG 0.465758 1_1:-51475358 Msa0027230:CDS
GCTTGATCTGGTCGAGAAGT+TGG 0.466266 1_1:-51470486 Msa0027230:CDS
ATTTGCACCAATTCTTTACT+GGG 0.468225 1_1:-51473885 Msa0027230:CDS
AAAGAAAATAGTTTATTGGT+TGG 0.470270 1_1:-51472779 Msa0027230:CDS
ATTCGTGAATGGTCAAGATC+TGG 0.470424 1_1:-51475202 Msa0027230:CDS
AGGGTATGCAAAATTTCTTC+CGG 0.470503 1_1:+51476968 None:intergenic
TGTTGATGCTGCCGCTCCTC+CGG 0.475825 1_1:-51477467 Msa0027230:CDS
TTATCAAGCATGTCAATCTT+GGG 0.478672 1_1:+51472914 None:intergenic
GCCGATGATGATTGTGATCA+TGG 0.480443 1_1:-51475139 Msa0027230:CDS
TCATATTGCTGAAGTGAAGC+TGG 0.481347 1_1:-51473029 Msa0027230:CDS
ATGTCCTCCTCTTTCAAGTC+AGG 0.481667 1_1:+51476172 None:intergenic
ACGATTGGATGAAGAACAAA+TGG 0.482210 1_1:-51475907 Msa0027230:CDS
ACGGAGAAGGAAGCCGAAAA+GGG 0.482416 1_1:-51477418 Msa0027230:CDS
AGCTTCATCAGGAGCAGCTA+TGG 0.485026 1_1:+51477492 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.485220 1_1:+51471092 None:intergenic
TATTGCTTATGGATTTGCTC+AGG 0.486399 1_1:-51473641 Msa0027230:CDS
GGTTTCTTGATTATCAGGAA+TGG 0.486545 1_1:+51477513 None:intergenic
CCATTCACGAATCTCGGGTT+GGG 0.489370 1_1:+51475213 None:intergenic
AAGATAAACTCAAACTCGAT+TGG 0.491141 1_1:+51475310 None:intergenic
GATTTGCTCAGGAGCTTGGG+CGG 0.493090 1_1:-51473630 Msa0027230:CDS
TATGTATGCTATGCTTGATC+TGG 0.494282 1_1:-51470498 Msa0027230:CDS
TGATGAAATCAATGCTGCTC+AGG 0.495231 1_1:-51477245 Msa0027230:CDS
TCTTCCGTATTTAAGACGAT+TGG 0.495391 1_1:-51475922 Msa0027230:CDS
CTTGACCATTCACGAATCTC+GGG 0.495468 1_1:+51475208 None:intergenic
GTAAAAGAAATGACAAGGGC+AGG 0.498499 1_1:-51477014 Msa0027230:CDS
AAACCCATCAGTATCTAGCT+AGG 0.502685 1_1:-51477673 Msa0027230:five_prime_UTR
CAGCTTCTGAACAAAAGTCC+AGG 0.502730 1_1:+51471667 None:intergenic
CCTTCAGATTTCGGACTTGG+TGG 0.506047 1_1:+51471612 None:intergenic
TGAAGAACAAATGGCTGAGA+AGG 0.507808 1_1:-51475898 Msa0027230:CDS
GCATCAACAGAAGCTTCATC+AGG 0.508288 1_1:+51477481 None:intergenic
TCAGAGATTGAATCTGGATA+GGG 0.513367 1_1:-51470221 Msa0027230:three_prime_UTR
GGAGCTACATGGTGATAATC+GGG 0.514858 1_1:-51472945 Msa0027230:CDS
TTTCAATGGCACTGGAGCAA+AGG 0.515097 1_1:-51474860 Msa0027230:CDS
ACCATTCACGAATCTCGGGT+TGG 0.516372 1_1:+51475212 None:intergenic
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 1_1:+51472963 None:intergenic
GACATTGCCAAGAAATGTCC+AGG 0.520062 1_1:-51476154 Msa0027230:CDS
ACTTGGTGGGGACAACCAGC+TGG 0.521593 1_1:+51471626 None:intergenic
ATGACGTAGATTTACGGCCC+TGG 0.523658 1_1:+51474898 None:intergenic
AGATTAAGGGGAAACGTGGT+AGG 0.523807 1_1:-51477300 Msa0027230:CDS
TACAGTTTACATAGGAACCT+TGG 0.524108 1_1:+51470252 None:intergenic
AAACTATTGATTGCTTGGAT+TGG 0.524576 1_1:-51474715 Msa0027230:CDS
GCATACCCTGTATTAACAGT+TGG 0.527233 1_1:-51476954 Msa0027230:intron
CTGTGGAGACTTCTGATAGT+AGG 0.527371 1_1:-51475021 Msa0027230:CDS
AGAACTTCTTATACTGTCCC+AGG 0.529232 1_1:-51474916 Msa0027230:CDS
GAATATACAGATCCTTTCAA+TGG 0.530031 1_1:-51473730 Msa0027230:CDS
CGATTTGTGGAAAATGGAAG+TGG 0.534768 1_1:-51472848 Msa0027230:CDS
ATAAAACGTCTGATCATGGA+TGG 0.535414 1_1:+51471839 None:intergenic
CCATTGCTCTCCTTTAAAGC+AGG 0.538406 1_1:-51472654 Msa0027230:intron
TTCAGATTTCGGACTTGGTG+GGG 0.539205 1_1:+51471614 None:intergenic
CTCAGAGATTGAATCTGGAT+AGG 0.540049 1_1:-51470222 Msa0027230:three_prime_UTR
GGATCTGTATATTCTTTGAA+CGG 0.541600 1_1:+51473739 None:intergenic
TTGCAATTACCACAGCATCC+TGG 0.543302 1_1:+51476136 None:intergenic
CTGCCACGTTTCTTTGCCGG+AGG 0.549368 1_1:+51477451 None:intergenic
CGAGGGCGTGATTATCTGCA+TGG 0.550325 1_1:-51475286 Msa0027230:CDS
GGACTCACCTGTACTTATCA+AGG 0.553693 1_1:-51476098 Msa0027230:intron
GACTTGTAGGAATTGAACCC+TGG 0.555009 1_1:-51471685 Msa0027230:intron
GCTTGGTATTACGTATCTGA+CGG 0.555671 1_1:+51474759 None:intergenic
ACAACACAGTTGCTTTCACA+GGG 0.556589 1_1:-51477543 Msa0027230:CDS
CTTCAGATTTCGGACTTGGT+GGG 0.557725 1_1:+51471613 None:intergenic
TAAAACGTCTGATCATGGAT+GGG 0.558437 1_1:+51471840 None:intergenic
AATGCACGCCACATGACAAA+CGG 0.559884 1_1:+51474782 None:intergenic
GAAATCAATGCTGCTCAGGA+GGG 0.560506 1_1:-51477241 Msa0027230:CDS
TGACGTAGATTTACGGCCCT+GGG 0.562320 1_1:+51474899 None:intergenic
GCTGGGAACCGTTTGTCATG+TGG 0.563485 1_1:-51474790 Msa0027230:CDS
GAACTGACCTTGATAAGTAC+AGG 0.563624 1_1:+51476091 None:intergenic
CTGGGATATCTTTCGGAGAG+AGG 0.564748 1_1:-51472732 Msa0027230:CDS
TTACTTAACTAATGTGGAGG+AGG 0.564991 1_1:-51477338 Msa0027230:CDS
AAATCAATGCTGCTCAGGAG+GGG 0.565311 1_1:-51477240 Msa0027230:CDS
CACGAAGCTCGCAGCAACAA+AGG 0.565525 1_1:+51475359 None:intergenic
AAACCCTAGCTAGATACTGA+TGG 0.565719 1_1:+51477669 None:intergenic
AATTAAGCTTCAAGTTGCTG+TGG 0.566902 1_1:-51475038 Msa0027230:CDS
TGAAATCAATGCTGCTCAGG+AGG 0.567663 1_1:-51477242 Msa0027230:CDS
GCACCTTGAGCAAGACAAGA+GGG 0.570458 1_1:-51472966 Msa0027230:CDS
ACAGTATAAGAAGTTCTCAC+TGG 0.571064 1_1:+51474922 None:intergenic
AAGTGGAATATGTGATGAAA+AGG 0.573587 1_1:-51472831 Msa0027230:CDS
TCTTTGTATTGCAACTGTAG+AGG 0.579879 1_1:-51470156 Msa0027230:three_prime_UTR
AATCAATGCTGCTCAGGAGG+GGG 0.580226 1_1:-51477239 Msa0027230:CDS
TGAGGATTACTTAACTAATG+TGG 0.581603 1_1:-51477344 Msa0027230:CDS
GAATAGTAGATCGTTGAATG+AGG 0.582028 1_1:-51477362 Msa0027230:CDS
TGTATATTCTTTGAACGGCA+AGG 0.583089 1_1:+51473744 None:intergenic
CCTGCTTTAAAGGAGAGCAA+TGG 0.584616 1_1:+51472654 None:intergenic
GAGTTTGAGTTTATCTTCCG+AGG 0.584896 1_1:-51475304 Msa0027230:CDS
TGGAACTGAAGAAGATTAAG+GGG 0.585226 1_1:-51477312 Msa0027230:CDS
GAAAATAGTTTATTGGTTGG+GGG 0.586081 1_1:-51472776 Msa0027230:CDS
GTTGCTGCGAGCTTCGTGGT+GGG 0.586137 1_1:-51475354 Msa0027230:CDS
GAAACGTGGTAGGAAGAAGA+AGG 0.586757 1_1:-51477290 Msa0027230:CDS
ATATGAACTCGGCACAATGA+CGG 0.586817 1_1:+51473770 None:intergenic
AAGGTATCCTGACTTGAAAG+AGG 0.587569 1_1:-51476179 Msa0027230:CDS
AGGTTTAGAACACCATTGAA+AGG 0.588651 1_1:+51473718 None:intergenic
AACCCTAGCTAGATACTGAT+GGG 0.588680 1_1:+51477670 None:intergenic
AACCCATCAGTATCTAGCTA+GGG 0.590250 1_1:-51477672 Msa0027230:five_prime_UTR
CAAGACAAGAGGGAGCTACA+TGG 0.591607 1_1:-51472956 Msa0027230:CDS
GTCTGCAGAGGACAAATTGG+AGG 0.593405 1_1:-51471068 Msa0027230:intron
TGTTGCTGCGAGCTTCGTGG+TGG 0.594415 1_1:-51475355 Msa0027230:CDS
TGATCTGGTCGAGAAGTTGG+AGG 0.595507 1_1:-51470483 Msa0027230:CDS
TGATTGCTTGGATTGGTGTG+AGG 0.595645 1_1:-51474708 Msa0027230:intron
TTACTGGGTACACAAAGGCT+CGG 0.595742 1_1:-51473870 Msa0027230:CDS
ACTTGGAGAGCTCAACCTCA+TGG 0.596456 1_1:+51475961 None:intergenic
AAAACGTCTGATCATGGATG+GGG 0.596952 1_1:+51471841 None:intergenic
CCCAACCCGAGATTCGTGAA+TGG 0.597529 1_1:-51475213 Msa0027230:CDS
ACGTTTCTTTGCCGGAGGAG+CGG 0.599042 1_1:+51477456 None:intergenic
CTTTAGGCAACTTCACAGCA+AGG 0.600321 1_1:+51473698 None:intergenic
AAGAAGGTGGCAATTGGTGT+CGG 0.600696 1_1:-51477274 Msa0027230:CDS
ATGTACATCAGGTTTAAGCT+GGG 0.604955 1_1:-51474807 Msa0027230:CDS
ACCATGATCACAATCATCAT+CGG 0.605104 1_1:+51475138 None:intergenic
CGAGTGCTTTCGTTTGACAG+AGG 0.605461 1_1:-51471119 Msa0027230:CDS
GTTATGTCTGGCACACCTTG+AGG 0.606055 1_1:-51470117 Msa0027230:three_prime_UTR
TAAAAGAAATGACAAGGGCA+GGG 0.606870 1_1:-51477013 Msa0027230:CDS
TCCTCAAATAAATTAGAAGG+AGG 0.607054 1_1:+51473802 None:intergenic
TGGAATATGTGATGAAAAGG+TGG 0.607337 1_1:-51472828 Msa0027230:CDS
GGCCGTAAATCTACGTCATG+AGG 0.608399 1_1:-51474894 Msa0027230:CDS
AGTTTGAGTTTATCTTCCGA+GGG 0.609136 1_1:-51475303 Msa0027230:CDS
GATACATCTACAGTTTACAT+AGG 0.609345 1_1:+51470244 None:intergenic
TCTTTCAGTTTCAAAACCTG+AGG 0.609559 1_1:+51473829 None:intergenic
AGCTTCTGAACAAAAGTCCA+GGG 0.617796 1_1:+51471668 None:intergenic
AGCACCTTGAGCAAGACAAG+AGG 0.618569 1_1:-51472967 Msa0027230:CDS
GAGATAGAAGCAAAGAGACA+AGG 0.619116 1_1:-51475876 Msa0027230:intron
TCGGGTTGGGCAGCAGCACG+AGG 0.619296 1_1:+51475226 None:intergenic
ATGCATTGAACAGCAACAGA+TGG 0.621495 1_1:-51477206 Msa0027230:intron
CGGCAAGGAAGATATGAACT+CGG 0.631163 1_1:+51473759 None:intergenic
TCGAGAAGTTGGAGGAAGCA+AGG 0.632086 1_1:-51470475 Msa0027230:intron
TTGAGTCGCGTAGTTAGGTG+TGG 0.636929 1_1:-51470190 Msa0027230:three_prime_UTR
CATACACAATAGCACAAGGA+AGG 0.637072 1_1:-51474963 Msa0027230:CDS
GCTCCTCCGGCAAAGAAACG+TGG 0.637351 1_1:-51477454 Msa0027230:CDS
CATGCAGATAATCACGCCCT+CGG 0.639805 1_1:+51475287 None:intergenic
TTACAGGTCTGGAGAAACCA+AGG 0.639931 1_1:-51470269 Msa0027230:intron
CCACCAAGTCCGAAATCTGA+AGG 0.644909 1_1:-51471612 Msa0027230:intron
GAAGTGAAGCTGGATTCTAA+GGG 0.652860 1_1:-51473019 Msa0027230:CDS
AAAAGGGCGAAAGTGTGAGA+AGG 0.653518 1_1:-51477402 Msa0027230:CDS
CTGACATACACAATAGCACA+AGG 0.658068 1_1:-51474967 Msa0027230:CDS
GGGCAGGGTTGTGAAATGCA+CGG 0.660572 1_1:-51476998 Msa0027230:CDS
AAACCCGAAAATTAGTACAC+AGG 0.661989 1_1:+51470031 None:intergenic
GGATGGCTTGCAGACAGTGA+TGG 0.662046 1_1:-51475181 Msa0027230:CDS
ATTCTTTACTGGGTACACAA+AGG 0.662591 1_1:-51473875 Msa0027230:CDS
ATGAACTCGGCACAATGACG+GGG 0.667242 1_1:+51473772 None:intergenic
GTATCCTGACTTGAAAGAGG+AGG 0.668706 1_1:-51476176 Msa0027230:CDS
TCAATGTAAAAGAAATGACA+AGG 0.668906 1_1:-51477019 Msa0027230:CDS
TAGTACACAGGATATACAAG+TGG 0.669313 1_1:+51470043 None:intergenic
CGTGGTGGGAAGCTTCTAGG+TGG 0.669451 1_1:-51475340 Msa0027230:CDS
CTACATGGTGATAATCGGGA+CGG 0.669945 1_1:-51472941 Msa0027230:CDS
GTGAATGGTCAAGATCTGGA+TGG 0.677090 1_1:-51475198 Msa0027230:CDS
AGTAAATCACAAGTCTGCAG+AGG 0.679551 1_1:-51471080 Msa0027230:CDS
ACATACCAACTGTTAATACA+GGG 0.682457 1_1:+51476949 None:intergenic
GGATTACTTAACTAATGTGG+AGG 0.684192 1_1:-51477341 Msa0027230:CDS
CTGCATCTGACATATCACAA+TGG 0.687580 1_1:+51473587 None:intergenic
GAACTTCTTATACTGTCCCA+GGG 0.691463 1_1:-51474915 Msa0027230:CDS
AAGAAATGTCCAGGATGCTG+TGG 0.691596 1_1:-51476145 Msa0027230:CDS
GGGCGTGATTATCTGCATGG+TGG 0.701277 1_1:-51475283 Msa0027230:CDS
ACGTGGTAGGAAGAAGAAGG+TGG 0.709702 1_1:-51477287 Msa0027230:CDS
AAGAAGATTAAGGGGAAACG+TGG 0.711553 1_1:-51477304 Msa0027230:CDS
CAATGTAAAAGAAATGACAA+GGG 0.715489 1_1:-51477018 Msa0027230:CDS
GAAAATTGGAATGTAAACGG+CGG 0.717466 1_1:+51477639 None:intergenic
AGAAACCAACAATGACCATG+AGG 0.730663 1_1:-51475976 Msa0027230:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 1_1:-51474858 Msa0027230:CDS
CAACACAGTTGCTTTCACAG+GGG 0.779411 1_1:-51477542 Msa0027230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATATTTATTAT+CGG - chr1_1:51471468-51471487 Msa0027230:intron 0.0%
!!! TTTTTTTTTTTTTTTGTCTT+TGG - chr1_1:51472116-51472135 Msa0027230:intron 10.0%
!!! TTTTTTTTTTTTTTGTCTTT+GGG - chr1_1:51472117-51472136 Msa0027230:intron 10.0%
!!! ACTATAATTTTACTTTATTT+AGG - chr1_1:51473127-51473146 Msa0027230:intron 10.0%
!!! CTATAATTTTACTTTATTTA+GGG - chr1_1:51473128-51473147 Msa0027230:intron 10.0%
!!! ATTTTTCAAAAGAAAAAATT+GGG + chr1_1:51475369-51475388 None:intergenic 10.0%
!!! TATTTTTCAAAAGAAAAAAT+TGG + chr1_1:51475370-51475389 None:intergenic 10.0%
!!! TTCTTTTGAAAAATAATTTT+TGG - chr1_1:51475375-51475394 Msa0027230:CDS 10.0%
!! AAAGTTTATAACGTTATTAT+CGG - chr1_1:51469944-51469963 Msa0027230:three_prime_UTR 15.0%
!!! AAAAATATTTATTATCGGTT+TGG - chr1_1:51471473-51471492 Msa0027230:intron 15.0%
!! TGATAAAGAAAATAGTTTAT+TGG - chr1_1:51474940-51474959 Msa0027230:CDS 15.0%
!! TTTAAATATTCTTCCAATTT+AGG + chr1_1:51475022-51475041 None:intergenic 15.0%
!!! ATTTAAAATAGATGATCAAA+AGG - chr1_1:51476331-51476350 Msa0027230:intron 15.0%
!! TTTGAAAATTGGAATGTAAA+CGG + chr1_1:51470090-51470109 None:intergenic 20.0%
!! TGTAGATTTATGTTTGAATT+TGG - chr1_1:51470580-51470599 Msa0027230:intron 20.0%
!! ACAGAATAAAACATAAGTTA+AGG + chr1_1:51470813-51470832 None:intergenic 20.0%
!! TACATTGTTTATAAAAGTGA+AGG + chr1_1:51471320-51471339 None:intergenic 20.0%
!!! GTGAAAAACATGATATTTTA+GGG - chr1_1:51471411-51471430 Msa0027230:intron 20.0%
!!! CTAAATTTGTTGATAATGTT+GGG + chr1_1:51473469-51473488 None:intergenic 20.0%
!!! TCTAAATTTGTTGATAATGT+TGG + chr1_1:51473470-51473489 None:intergenic 20.0%
!! AAAGAAAATGAATACAACTA+GGG + chr1_1:51473675-51473694 None:intergenic 20.0%
!! ATAAAAATTGCAGAAATTAC+TGG + chr1_1:51473787-51473806 None:intergenic 20.0%
!!! CATAAGCAATATATGTTTTT+GGG + chr1_1:51474073-51474092 None:intergenic 20.0%
!! TAAAATATCATAAGACATTG+TGG + chr1_1:51474199-51474218 None:intergenic 20.0%
!! TAATTGAGTATCATATTGAA+AGG - chr1_1:51474242-51474261 Msa0027230:intron 20.0%
!!! TCATTTTATAAGGTATCTTT+TGG - chr1_1:51474497-51474516 Msa0027230:intron 20.0%
!! AAAGAAAATAGTTTATTGGT+TGG - chr1_1:51474944-51474963 Msa0027230:CDS 20.0%
!!! AAGAAAATAGTTTATTGGTT+GGG - chr1_1:51474945-51474964 Msa0027230:CDS 20.0%
!!! ACAATTTTCTATTATCTGTT+GGG - chr1_1:51475106-51475125 Msa0027230:CDS 20.0%
!! TTAATGACTCAAGTTAAAAT+GGG + chr1_1:51475136-51475155 None:intergenic 20.0%
!!! AATAATTTTTGGTACATACT+TGG - chr1_1:51475386-51475405 Msa0027230:CDS 20.0%
!! ATTAAGATTATCAACTCAAT+GGG + chr1_1:51475721-51475740 None:intergenic 20.0%
!! TATTAAGATTATCAACTCAA+TGG + chr1_1:51475722-51475741 None:intergenic 20.0%
!! GAAATTAAATACAAATAGAG+TGG + chr1_1:51475826-51475845 None:intergenic 20.0%
!! GGTATAACATACATATATTA+TGG - chr1_1:51476132-51476151 Msa0027230:CDS 20.0%
!! CAAAAAAAAACTTTCTTGAA+TGG - chr1_1:51476381-51476400 Msa0027230:intron 20.0%
!!! TACATAACTTTAGTTTCTTT+AGG - chr1_1:51477383-51477402 Msa0027230:CDS 20.0%
!!! AAACAATATATGACTTGTAA+TGG - chr1_1:51477640-51477659 Msa0027230:five_prime_UTR 20.0%
!!! TCACAGCTTTAAACATAATA+AGG + chr1_1:51470028-51470047 None:intergenic 25.0%
! TGTTTGTAGTGTTTGAAAAT+TGG + chr1_1:51470101-51470120 None:intergenic 25.0%
! TTACATGTTGTATGTAATTG+TGG - chr1_1:51470605-51470624 Msa0027230:intron 25.0%
!! TTACTGTTTCTCAATAAACA+GGG - chr1_1:51470633-51470652 Msa0027230:intron 25.0%
!!! TGTCATTTCTTTTACATTGA+TGG + chr1_1:51470704-51470723 None:intergenic 25.0%
! TCAATGTAAAAGAAATGACA+AGG - chr1_1:51470704-51470723 Msa0027230:intron 25.0%
! CAATGTAAAAGAAATGACAA+GGG - chr1_1:51470705-51470724 Msa0027230:intron 25.0%
! TGTTTATAAAAGTGAAGGTT+GGG + chr1_1:51471315-51471334 None:intergenic 25.0%
! TTGTTTATAAAAGTGAAGGT+TGG + chr1_1:51471316-51471335 None:intergenic 25.0%
!! GGTGAAAAACATGATATTTT+AGG - chr1_1:51471410-51471429 Msa0027230:intron 25.0%
!!! CATGATATTTTAGGGATATT+TGG - chr1_1:51471419-51471438 Msa0027230:intron 25.0%
!!! TTTATTATCGGTTTGGATTT+TGG - chr1_1:51471480-51471499 Msa0027230:intron 25.0%
! AGGAATAGTTAATCTATAAG+GGG + chr1_1:51471660-51471679 None:intergenic 25.0%
! CAGGAATAGTTAATCTATAA+GGG + chr1_1:51471661-51471680 None:intergenic 25.0%
! ACAGGAATAGTTAATCTATA+AGG + chr1_1:51471662-51471681 None:intergenic 25.0%
!! ACATTTGAAATGTGATAATC+TGG - chr1_1:51471697-51471716 Msa0027230:intron 25.0%
!! AAGTATTTTCAGCATATACT+TGG + chr1_1:51471782-51471801 None:intergenic 25.0%
! AAGCAACACACATTAATAAA+AGG + chr1_1:51471933-51471952 None:intergenic 25.0%
!! TTTTGCTTTACATACTAACT+CGG + chr1_1:51472651-51472670 None:intergenic 25.0%
!!! AGGATTTAAGACATTTTCAA+TGG - chr1_1:51472849-51472868 Msa0027230:CDS 25.0%
! TTGTGATCTTTGCTAAAATT+TGG - chr1_1:51473099-51473118 Msa0027230:intron 25.0%
!! TCATACATGTTTTCTGAATT+TGG - chr1_1:51473186-51473205 Msa0027230:intron 25.0%
!! CATACATGTTTTCTGAATTT+GGG - chr1_1:51473187-51473206 Msa0027230:intron 25.0%
!! TTACTGTTCCAACTAATTTT+TGG - chr1_1:51473323-51473342 Msa0027230:intron 25.0%
! TTGTATATTTGCAGACAAAT+AGG + chr1_1:51473434-51473453 None:intergenic 25.0%
! GATGAGAGAAGTTATAATTA+AGG + chr1_1:51473516-51473535 None:intergenic 25.0%
! AAGAAAATGAATACAACTAG+GGG + chr1_1:51473674-51473693 None:intergenic 25.0%
! GAAAGAAAATGAATACAACT+AGG + chr1_1:51473676-51473695 None:intergenic 25.0%
! CTTTCCTCAAATAAATTAGA+AGG + chr1_1:51473927-51473946 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+TGG + chr1_1:51474074-51474093 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG - chr1_1:51474071-51474090 Msa0027230:intron 25.0%
!! AGTATTTTCAAAGAACACTA+CGG + chr1_1:51474370-51474389 None:intergenic 25.0%
!! ATTAGCTGCATCATTTTATA+AGG - chr1_1:51474487-51474506 Msa0027230:intron 25.0%
!!! TCTGTGCTTCATTTTTTTTT+TGG - chr1_1:51474585-51474604 Msa0027230:intron 25.0%
!! AACATGTTTCTTGTTTAATC+TGG - chr1_1:51474649-51474668 Msa0027230:intron 25.0%
!!! CTTTTGTGTCAGTTTTTTAA+TGG + chr1_1:51474738-51474757 None:intergenic 25.0%
! TAATTCATCTTCTTCCATAA+AGG - chr1_1:51474829-51474848 Msa0027230:CDS 25.0%
!! AGAAAATAGTTTATTGGTTG+GGG - chr1_1:51474946-51474965 Msa0027230:CDS 25.0%
!! ACTAATTTTACCTGCTTTAA+AGG + chr1_1:51475082-51475101 None:intergenic 25.0%
!! GACAATTTTCTATTATCTGT+TGG - chr1_1:51475105-51475124 Msa0027230:CDS 25.0%
! TAATGACTCAAGTTAAAATG+GGG + chr1_1:51475135-51475154 None:intergenic 25.0%
! GTTAATGACTCAAGTTAAAA+TGG + chr1_1:51475137-51475156 None:intergenic 25.0%
! TACTGAAAGTAAAACTAACT+GGG + chr1_1:51475174-51475193 None:intergenic 25.0%
! TTACTGAAAGTAAAACTAAC+TGG + chr1_1:51475175-51475194 None:intergenic 25.0%
! GTCACTGTATATGTAATATT+AGG - chr1_1:51475209-51475228 Msa0027230:CDS 25.0%
!! AGATAGCATCAATTTTATCA+TGG + chr1_1:51475243-51475262 None:intergenic 25.0%
!! ACACAATTAATCAAAAGTGT+CGG - chr1_1:51475280-51475299 Msa0027230:CDS 25.0%
! AAAAAATTGGGTACTTTGTT+TGG + chr1_1:51475357-51475376 None:intergenic 25.0%
! TATTGAAACATATGATATGC+AGG - chr1_1:51475679-51475698 Msa0027230:intron 25.0%
! TATGTTATACCTTCAGATTT+CGG + chr1_1:51476123-51476142 None:intergenic 25.0%
! AAAGGAATAACTTTCTTGAA+TGG - chr1_1:51476349-51476368 Msa0027230:intron 25.0%
! GATATGCAATATCTCAATAT+TGG + chr1_1:51476731-51476750 None:intergenic 25.0%
! AAAGAAGCTAATAACAAAAC+AGG + chr1_1:51476753-51476772 None:intergenic 25.0%
!! CTTTCAACTAGATTTCATTT+TGG - chr1_1:51476769-51476788 Msa0027230:intron 25.0%
! ATTCAACAAGTAAAAACAGT+TGG + chr1_1:51477057-51477076 None:intergenic 25.0%
!! TAACAATCTTTTGATATGAC+AGG + chr1_1:51477137-51477156 None:intergenic 25.0%
!! ATATCCTGTGTACTAATTTT+CGG - chr1_1:51477688-51477707 Msa0027230:five_prime_UTR 25.0%
! TCATACTCGTCTTTAATTTC+AGG - chr1_1:51469987-51470006 Msa0027230:three_prime_UTR 30.0%
! TCTCCATTTGAATTTTTCCA+TGG - chr1_1:51470136-51470155 Msa0027230:three_prime_UTR 30.0%
TGAGGATTACTTAACTAATG+TGG - chr1_1:51470379-51470398 Msa0027230:intron 30.0%
! GTTACTGTTTCTCAATAAAC+AGG - chr1_1:51470632-51470651 Msa0027230:intron 30.0%
! TACTGTTTCTCAATAAACAG+GGG - chr1_1:51470634-51470653 Msa0027230:intron 30.0%
ACATACCAACTGTTAATACA+GGG + chr1_1:51470777-51470796 None:intergenic 30.0%
TACATACCAACTGTTAATAC+AGG + chr1_1:51470778-51470797 None:intergenic 30.0%
!! TTAACTTGCTTCCTATTTGT+TGG - chr1_1:51470833-51470852 Msa0027230:intron 30.0%
ACACAAGATAACCAACAAAT+AGG + chr1_1:51470847-51470866 None:intergenic 30.0%
! TATTTGTTGGTTATCTTGTG+TGG - chr1_1:51470846-51470865 Msa0027230:intron 30.0%
! ATTTGTTGGTTATCTTGTGT+GGG - chr1_1:51470847-51470866 Msa0027230:intron 30.0%
ATTGATAAACTCACACTTGA+GGG + chr1_1:51471007-51471026 None:intergenic 30.0%
AATTGATAAACTCACACTTG+AGG + chr1_1:51471008-51471027 None:intergenic 30.0%
!!! TAAGGTTTTAGGTTACAATG+TGG + chr1_1:51471259-51471278 None:intergenic 30.0%
CATTGTAACCTAAAACCTTA+AGG - chr1_1:51471259-51471278 Msa0027230:intron 30.0%
!! ATGTTTTTGCTGTCTTATGA+AGG - chr1_1:51471525-51471544 Msa0027230:intron 30.0%
GGAATAGTTAATCTATAAGG+GGG + chr1_1:51471659-51471678 None:intergenic 30.0%
TGTAGAATACAACAAATCAC+AGG + chr1_1:51471680-51471699 None:intergenic 30.0%
TCATCCAATCGTCTTAAATA+CGG + chr1_1:51471808-51471827 None:intergenic 30.0%
AATCCAAAAGAAAGAAGAAG+AGG + chr1_1:51472011-51472030 None:intergenic 30.0%
ATATAAGTATAGTGTGAAGC+AGG + chr1_1:51472051-51472070 None:intergenic 30.0%
AAGATAAACTCAAACTCGAT+TGG + chr1_1:51472416-51472435 None:intergenic 30.0%
AGTACATTGCTGACAATTAT+AGG + chr1_1:51472893-51472912 None:intergenic 30.0%
AATGTACTTGAATGTACATC+AGG - chr1_1:51472905-51472924 Msa0027230:CDS 30.0%
! TACCAAGCAAAAAACACTTT+TGG - chr1_1:51472979-51472998 Msa0027230:CDS 30.0%
!!! ATCCAAAAGTGTTTTTTGCT+TGG + chr1_1:51472984-51473003 None:intergenic 30.0%
! TGTGAAAACTATTGATTGCT+TGG - chr1_1:51473003-51473022 Msa0027230:CDS 30.0%
! AAACTATTGATTGCTTGGAT+TGG - chr1_1:51473008-51473027 Msa0027230:CDS 30.0%
AAGTTTCTCTTAATCCCAAA+AGG + chr1_1:51473222-51473241 None:intergenic 30.0%
ATGAAGTATGACTTGAGTAA+TGG + chr1_1:51473263-51473282 None:intergenic 30.0%
TCAATGTCTTGAAAAGATGT+TGG - chr1_1:51473291-51473310 Msa0027230:intron 30.0%
AATTAGTTGGAACAGTAACT+TGG + chr1_1:51473321-51473340 None:intergenic 30.0%
TAGATCAAGCAAAAAGAACA+GGG + chr1_1:51473624-51473643 None:intergenic 30.0%
GTGTGACAAACTATATAGAA+AGG + chr1_1:51473698-51473717 None:intergenic 30.0%
AATTTGCACCAATTCTTTAC+TGG - chr1_1:51473837-51473856 Msa0027230:CDS 30.0%
ATTTGCACCAATTCTTTACT+GGG - chr1_1:51473838-51473857 Msa0027230:CDS 30.0%
!!! AGGTTTTGAAACTGAAAGAT+TGG - chr1_1:51473898-51473917 Msa0027230:CDS 30.0%
TCCTCAAATAAATTAGAAGG+AGG + chr1_1:51473924-51473943 None:intergenic 30.0%
GGATCTGTATATTCTTTGAA+CGG + chr1_1:51473987-51474006 None:intergenic 30.0%
GAATATACAGATCCTTTCAA+TGG - chr1_1:51473993-51474012 Msa0027230:intron 30.0%
! ATTCATAGTCTTTCTAGCAT+TGG - chr1_1:51474168-51474187 Msa0027230:intron 30.0%
!! TTGAAAGGTGCATAGTTTTT+AGG - chr1_1:51474257-51474276 Msa0027230:intron 30.0%
!!! GTGTTACTTACCTTTTGTTT+TGG - chr1_1:51474427-51474446 Msa0027230:intron 30.0%
TTAGCAGTAACCAAAACAAA+AGG + chr1_1:51474440-51474459 None:intergenic 30.0%
ATGGATCTGCTAATAAGTAT+AGG + chr1_1:51474542-51474561 None:intergenic 30.0%
TGAATGCATACTCTATTATG+AGG - chr1_1:51474619-51474638 Msa0027230:intron 30.0%
!!! CTTGTTTAATCTGGCTTTTT+AGG - chr1_1:51474658-51474677 Msa0027230:intron 30.0%
TTATCAAGCATGTCAATCTT+GGG + chr1_1:51474812-51474831 None:intergenic 30.0%
ATTATCAAGCATGTCAATCT+TGG + chr1_1:51474813-51474832 None:intergenic 30.0%
AAGTGGAATATGTGATGAAA+AGG - chr1_1:51474892-51474911 Msa0027230:CDS 30.0%
! GAAAATAGTTTATTGGTTGG+GGG - chr1_1:51474947-51474966 Msa0027230:CDS 30.0%
TGTATAACAATAAACTGAGC+TGG + chr1_1:51475498-51475517 None:intergenic 30.0%
TTGTTATACATGACAGTCTT+TGG - chr1_1:51475508-51475527 Msa0027230:intron 30.0%
TGTTATACATGACAGTCTTT+GGG - chr1_1:51475509-51475528 Msa0027230:intron 30.0%
AACACCTTCTTTGATATTGT+AGG - chr1_1:51475852-51475871 Msa0027230:intron 30.0%
ACAACCTACAATATCAAAGA+AGG + chr1_1:51475859-51475878 None:intergenic 30.0%
TCAAATAAAACGTCTGATCA+TGG + chr1_1:51475891-51475910 None:intergenic 30.0%
!! ACAATTCAACATTGACTTGT+AGG - chr1_1:51476025-51476044 Msa0027230:intron 30.0%
AGAAGAGAGAGAATACATAT+AGG - chr1_1:51476237-51476256 Msa0027230:intron 30.0%
ATTCCCATCAGTATATTCAT+GGG - chr1_1:51476278-51476297 Msa0027230:intron 30.0%
! GTAGTGAAGATTTTCTTTCA+CGG + chr1_1:51476413-51476432 None:intergenic 30.0%
GAGCTAGTGATAGATAATTT+AGG + chr1_1:51476452-51476471 None:intergenic 30.0%
TTTGTCTCTCCTGAAAATAT+TGG - chr1_1:51476581-51476600 Msa0027230:intron 30.0%
TCAAATCAACAAATGTAGCA+TGG + chr1_1:51476687-51476706 None:intergenic 30.0%
!! CAGATTCTAAAACAGCTATT+GGG + chr1_1:51476795-51476814 None:intergenic 30.0%
!!! CAATAGCTGTTTTAGAATCT+GGG - chr1_1:51476794-51476813 Msa0027230:intron 30.0%
! TTTGGCTTATTGGAACAATT+TGG - chr1_1:51476817-51476836 Msa0027230:intron 30.0%
!! AGTAACATAGGTTCTGAAAT+TGG + chr1_1:51477101-51477120 None:intergenic 30.0%
CAAGTATGATACAGTAACAT+AGG + chr1_1:51477113-51477132 None:intergenic 30.0%
TATCACAAATCCATAACCAT+AGG + chr1_1:51477295-51477314 None:intergenic 30.0%
ATGTCTGTCATTCAATTTAC+AGG - chr1_1:51477438-51477457 Msa0027230:CDS 30.0%
GATACATCTACAGTTTACAT+AGG + chr1_1:51477482-51477501 None:intergenic 30.0%
!! AGTCCATATTTTGTTATGTC+TGG - chr1_1:51477594-51477613 Msa0027230:five_prime_UTR 30.0%
GTTTAAAAAATGCTTCCTCA+AGG + chr1_1:51477624-51477643 None:intergenic 30.0%
! TATCCTGTGTACTAATTTTC+GGG - chr1_1:51477689-51477708 Msa0027230:five_prime_UTR 30.0%
GAAAATTGGAATGTAAACGG+CGG + chr1_1:51470087-51470106 None:intergenic 35.0%
! CCATTTGAATTTTTCCATGG+CGG - chr1_1:51470139-51470158 Msa0027230:three_prime_UTR 35.0%
! CATTTGAATTTTTCCATGGC+GGG - chr1_1:51470140-51470159 Msa0027230:three_prime_UTR 35.0%
! ATTTGAATTTTTCCATGGCG+GGG - chr1_1:51470141-51470160 Msa0027230:three_prime_UTR 35.0%
GGTTTCTTGATTATCAGGAA+TGG + chr1_1:51470213-51470232 None:intergenic 35.0%
GCTATGGTTTCTTGATTATC+AGG + chr1_1:51470218-51470237 None:intergenic 35.0%
GAATAGTAGATCGTTGAATG+AGG - chr1_1:51470361-51470380 Msa0027230:intron 35.0%
GGATTACTTAACTAATGTGG+AGG - chr1_1:51470382-51470401 Msa0027230:intron 35.0%
TTACTTAACTAATGTGGAGG+AGG - chr1_1:51470385-51470404 Msa0027230:intron 35.0%
CTGGAACTGAAGAAGATTAA+GGG - chr1_1:51470410-51470429 Msa0027230:intron 35.0%
TGGAACTGAAGAAGATTAAG+GGG - chr1_1:51470411-51470430 Msa0027230:intron 35.0%
GATTGAAGATGTGTCCTTAT+TGG - chr1_1:51470656-51470675 Msa0027230:intron 35.0%
! GTCCTTATTGGTCTGTAATA+AGG - chr1_1:51470668-51470687 Msa0027230:intron 35.0%
GTCCTTATTACAGACCAATA+AGG + chr1_1:51470673-51470692 None:intergenic 35.0%
TAAAAGAAATGACAAGGGCA+GGG - chr1_1:51470710-51470729 Msa0027230:intron 35.0%
AGGGTATGCAAAATTTCTTC+CGG + chr1_1:51470758-51470777 None:intergenic 35.0%
! TTTGTTGGTTATCTTGTGTG+GGG - chr1_1:51470848-51470867 Msa0027230:intron 35.0%
CACTTTAACCCAAAACCTTA+AGG - chr1_1:51470939-51470958 Msa0027230:intron 35.0%
TTGATAAACTCACACTTGAG+GGG + chr1_1:51471006-51471025 None:intergenic 35.0%
ATGAAAGAACTTCCACTTGA+GGG + chr1_1:51471043-51471062 None:intergenic 35.0%
AGTATAAGTGCAAGTGTATG+TGG + chr1_1:51471066-51471085 None:intergenic 35.0%
ATATCGAAAGTTCAGGTCAT+GGG + chr1_1:51471120-51471139 None:intergenic 35.0%
TATATCGAAAGTTCAGGTCA+TGG + chr1_1:51471121-51471140 None:intergenic 35.0%
TGACCTGAACTTTCGATATA+AGG - chr1_1:51471121-51471140 Msa0027230:CDS 35.0%
AACCTAAAACCTTAAGGCAA+TGG - chr1_1:51471265-51471284 Msa0027230:intron 35.0%
ACCTAAAACCTTAAGGCAAT+GGG - chr1_1:51471266-51471285 Msa0027230:intron 35.0%
TTCAATAACAAGACGTTGTG+TGG + chr1_1:51471366-51471385 None:intergenic 35.0%
!! GTCTTGTTATTGAATGAGAC+TGG - chr1_1:51471372-51471391 Msa0027230:intron 35.0%
AAGACAGCAAAAACATACAC+TGG + chr1_1:51471521-51471540 None:intergenic 35.0%
! TCTTCCGTATTTAAGACGAT+TGG - chr1_1:51471801-51471820 Msa0027230:CDS 35.0%
ACGATTGGATGAAGAACAAA+TGG - chr1_1:51471816-51471835 Msa0027230:CDS 35.0%
! ACTCCTCTTCTTCTTTCTTT+TGG - chr1_1:51472005-51472024 Msa0027230:intron 35.0%
!!! CTCTTTTTTAGGGATATCTG+CGG + chr1_1:51472186-51472205 None:intergenic 35.0%
!!! AGTACACACGCTCTTTTTTA+GGG + chr1_1:51472196-51472215 None:intergenic 35.0%
! AGTTTGAGTTTATCTTCCGA+GGG - chr1_1:51472420-51472439 Msa0027230:intron 35.0%
ACCATGATCACAATCATCAT+CGG + chr1_1:51472588-51472607 None:intergenic 35.0%
!! AATTAAGCTTCAAGTTGCTG+TGG - chr1_1:51472685-51472704 Msa0027230:CDS 35.0%
ATGTCAGATGCATTCAAAAC+AGG + chr1_1:51472743-51472762 None:intergenic 35.0%
ACAGTATAAGAAGTTCTCAC+TGG + chr1_1:51472804-51472823 None:intergenic 35.0%
ATCCTCATGACGTAGATTTA+CGG + chr1_1:51472834-51472853 None:intergenic 35.0%
! TAAGACATTTTCAATGGCAC+TGG - chr1_1:51472855-51472874 Msa0027230:CDS 35.0%
AATGTACATCAGGTTTAAGC+TGG - chr1_1:51472915-51472934 Msa0027230:CDS 35.0%
ATGTACATCAGGTTTAAGCT+GGG - chr1_1:51472916-51472935 Msa0027230:CDS 35.0%
CACAATACAAGCTCAAGATA+TGG + chr1_1:51473084-51473103 None:intergenic 35.0%
! TTTGGGTATTTCCATCCTTT+TGG - chr1_1:51473204-51473223 Msa0027230:intron 35.0%
! TTGGGTATTTCCATCCTTTT+GGG - chr1_1:51473205-51473224 Msa0027230:intron 35.0%
TTCTCTTAATCCCAAAAGGA+TGG + chr1_1:51473218-51473237 None:intergenic 35.0%
!! CTGTTCCAACTAATTTTTGG+CGG - chr1_1:51473326-51473345 Msa0027230:intron 35.0%
AAAAACGTGTCTAGACTAGA+TGG - chr1_1:51473364-51473383 Msa0027230:intron 35.0%
CTCATCTTTCTCTTAGTCAT+AGG - chr1_1:51473530-51473549 Msa0027230:intron 35.0%
GTAGATCAAGCAAAAAGAAC+AGG + chr1_1:51473625-51473644 None:intergenic 35.0%
!! AAGGGCAACAAAAAGTACTT+GGG + chr1_1:51473647-51473666 None:intergenic 35.0%
CAGATAGACATGTCATGTAA+AGG + chr1_1:51473761-51473780 None:intergenic 35.0%
TTGTGTACCCAGTAAAGAAT+TGG + chr1_1:51473848-51473867 None:intergenic 35.0%
ATTCTTTACTGGGTACACAA+AGG - chr1_1:51473848-51473867 Msa0027230:CDS 35.0%
TCTTTCAGTTTCAAAACCTG+AGG + chr1_1:51473897-51473916 None:intergenic 35.0%
GCCTCCTTCTAATTTATTTG+AGG - chr1_1:51473920-51473939 Msa0027230:intron 35.0%
TGTATATTCTTTGAACGGCA+AGG + chr1_1:51473982-51474001 None:intergenic 35.0%
! AGGTTTAGAACACCATTGAA+AGG + chr1_1:51474008-51474027 None:intergenic 35.0%
TCTGGCTGTAAAACATCTTT+AGG + chr1_1:51474044-51474063 None:intergenic 35.0%
! TATTGCTTATGGATTTGCTC+AGG - chr1_1:51474082-51474101 Msa0027230:intron 35.0%
GTGCAACAAGCAAAAAAGTA+AGG + chr1_1:51474348-51474367 None:intergenic 35.0%
TTGCTCATATGAAGCCTTTA+TGG + chr1_1:51474846-51474865 None:intergenic 35.0%
! GCAAAATAGTGTTCGATTTG+TGG - chr1_1:51474862-51474881 Msa0027230:CDS 35.0%
! AGTGTTCGATTTGTGGAAAA+TGG - chr1_1:51474869-51474888 Msa0027230:CDS 35.0%
TGGAATATGTGATGAAAAGG+TGG - chr1_1:51474895-51474914 Msa0027230:CDS 35.0%
GATACACATGAGTACTTCTT+GGG + chr1_1:51475335-51475354 None:intergenic 35.0%
TTTGGGTACATCTTGAATGT+TGG - chr1_1:51475430-51475449 Msa0027230:CDS 35.0%
GTAACGTCATGACATGAATA+AGG - chr1_1:51475633-51475652 Msa0027230:intron 35.0%
TAAAACGTCTGATCATGGAT+GGG + chr1_1:51475886-51475905 None:intergenic 35.0%
ATAAAACGTCTGATCATGGA+TGG + chr1_1:51475887-51475906 None:intergenic 35.0%
TGACTATCGAGCATAAAAAG+AGG - chr1_1:51475908-51475927 Msa0027230:CDS 35.0%
TATACACTTTGTGGCAAACA+AGG + chr1_1:51476187-51476206 None:intergenic 35.0%
GATTCCCATCAGTATATTCA+TGG - chr1_1:51476277-51476296 Msa0027230:intron 35.0%
TTCCCATCAGTATATTCATG+GGG - chr1_1:51476279-51476298 Msa0027230:intron 35.0%
GGAATAACTTTCTTGAATGG+TGG - chr1_1:51476352-51476371 Msa0027230:intron 35.0%
! TGAAGATTTTCTTTCACGGT+TGG + chr1_1:51476409-51476428 None:intergenic 35.0%
TGTGATTTACTGGAAGTTTG+CGG + chr1_1:51476634-51476653 None:intergenic 35.0%
!! CCAGATTCTAAAACAGCTAT+TGG + chr1_1:51476796-51476815 None:intergenic 35.0%
!!! CCAATAGCTGTTTTAGAATC+TGG - chr1_1:51476793-51476812 Msa0027230:intron 35.0%
AACCTATTAGTGTTTGGATC+TGG + chr1_1:51476897-51476916 None:intergenic 35.0%
CAGTTCAACCTATTAGTGTT+TGG + chr1_1:51476903-51476922 None:intergenic 35.0%
! CAAACACTAATAGGTTGAAC+TGG - chr1_1:51476901-51476920 Msa0027230:intron 35.0%
!! TATCTGATTGCTGCTTCTTT+TGG - chr1_1:51477182-51477201 Msa0027230:intron 35.0%
!! TTGCTGCTTCTTTTGGTAAA+AGG - chr1_1:51477189-51477208 Msa0027230:intron 35.0%
TATGTATGCTATGCTTGATC+TGG - chr1_1:51477225-51477244 Msa0027230:CDS 35.0%
GGTTAGTGATTGCAAACTTT+AGG - chr1_1:51477269-51477288 Msa0027230:CDS 35.0%
AAACTTTAGGCCTATGGTTA+TGG - chr1_1:51477282-51477301 Msa0027230:CDS 35.0%
! CTTTAGTTTCTTTAGGCTCA+CGG - chr1_1:51477390-51477409 Msa0027230:CDS 35.0%
TGTCATTCAATTTACAGGTC+TGG - chr1_1:51477443-51477462 Msa0027230:CDS 35.0%
TACAGTTTACATAGGAACCT+TGG + chr1_1:51477474-51477493 None:intergenic 35.0%
TGTATCTCAGAGATTGAATC+TGG - chr1_1:51477496-51477515 Msa0027230:CDS 35.0%
TCAGAGATTGAATCTGGATA+GGG - chr1_1:51477502-51477521 Msa0027230:CDS 35.0%
TAAATTTGAGTCGCGTAGTT+AGG - chr1_1:51477528-51477547 Msa0027230:CDS 35.0%
TCTTTGTATTGCAACTGTAG+AGG - chr1_1:51477567-51477586 Msa0027230:CDS 35.0%
GTGCCAGACATAACAAAATA+TGG + chr1_1:51477600-51477619 None:intergenic 35.0%
CTTGTAATGGTGTTCTTACA+AGG - chr1_1:51477653-51477672 Msa0027230:five_prime_UTR 35.0%
TAGTACACAGGATATACAAG+TGG + chr1_1:51477683-51477702 None:intergenic 35.0%
AAACCCGAAAATTAGTACAC+AGG + chr1_1:51477695-51477714 None:intergenic 35.0%
!!! TACTAATTTTCGGGTTTGTC+TGG - chr1_1:51477698-51477717 Msa0027230:five_prime_UTR 35.0%
AAACCCATCAGTATCTAGCT+AGG - chr1_1:51470050-51470069 Msa0027230:three_prime_UTR 40.0%
AACCCATCAGTATCTAGCTA+GGG - chr1_1:51470051-51470070 Msa0027230:three_prime_UTR 40.0%
AACCCTAGCTAGATACTGAT+GGG + chr1_1:51470056-51470075 None:intergenic 40.0%
AAACCCTAGCTAGATACTGA+TGG + chr1_1:51470057-51470076 None:intergenic 40.0%
CCGCCATGGAAAAATTCAAA+TGG + chr1_1:51470142-51470161 None:intergenic 40.0%
! TTTGAATTTTTCCATGGCGG+GGG - chr1_1:51470142-51470161 Msa0027230:three_prime_UTR 40.0%
! AACAACACAGTTGCTTTCAC+AGG - chr1_1:51470179-51470198 Msa0027230:three_prime_UTR 40.0%
! ACAACACAGTTGCTTTCACA+GGG - chr1_1:51470180-51470199 Msa0027230:three_prime_UTR 40.0%
ACGTGGCAGAAAGAGAAAAA+CGG - chr1_1:51470286-51470305 Msa0027230:intron 40.0%
CAGAAAGAGAAAAACGGAGA+AGG - chr1_1:51470292-51470311 Msa0027230:intron 40.0%
GCTGGAACTGAAGAAGATTA+AGG - chr1_1:51470409-51470428 Msa0027230:intron 40.0%
AAGAAGATTAAGGGGAAACG+TGG - chr1_1:51470419-51470438 Msa0027230:intron 40.0%
TGATGAAATCAATGCTGCTC+AGG - chr1_1:51470478-51470497 Msa0027230:CDS 40.0%
! TGTTGCTGTTCAATGCATTC+AGG + chr1_1:51470515-51470534 None:intergenic 40.0%
ATGCATTGAACAGCAACAGA+TGG - chr1_1:51470517-51470536 Msa0027230:intron 40.0%
GTAAAAGAAATGACAAGGGC+AGG - chr1_1:51470709-51470728 Msa0027230:intron 40.0%
GCATACCCTGTATTAACAGT+TGG - chr1_1:51470769-51470788 Msa0027230:intron 40.0%
AGCAACTAGACAAGTGAGTT+TGG - chr1_1:51470910-51470929 Msa0027230:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG - chr1_1:51470945-51470964 Msa0027230:intron 40.0%
! ACCCAAAACCTTAAGGCATT+GGG - chr1_1:51470946-51470965 Msa0027230:intron 40.0%
! ACCCAATGCCTTAAGGTTTT+GGG + chr1_1:51470950-51470969 None:intergenic 40.0%
! AACCCAATGCCTTAAGGTTT+TGG + chr1_1:51470951-51470970 None:intergenic 40.0%
!! ACCTTAAGGCATTGGGTTTA+AGG - chr1_1:51470953-51470972 Msa0027230:intron 40.0%
!! CCTTAAGGCATTGGGTTTAA+GGG - chr1_1:51470954-51470973 Msa0027230:intron 40.0%
ATTGTTCTGTAGCAAGTGAG+AGG + chr1_1:51470981-51471000 None:intergenic 40.0%
TGAAAGAACTTCCACTTGAG+GGG + chr1_1:51471042-51471061 None:intergenic 40.0%
GATGAAAGAACTTCCACTTG+AGG + chr1_1:51471044-51471063 None:intergenic 40.0%
GCTCCTTATATCGAAAGTTC+AGG + chr1_1:51471127-51471146 None:intergenic 40.0%
GAACTTTCGATATAAGGAGC+CGG - chr1_1:51471127-51471146 Msa0027230:CDS 40.0%
! ACCCATTGCCTTAAGGTTTT+AGG + chr1_1:51471270-51471289 None:intergenic 40.0%
! ACCTTAAGGCAATGGGTTTA+TGG - chr1_1:51471273-51471292 Msa0027230:intron 40.0%
TCCATAAACCCATTGCCTTA+AGG + chr1_1:51471277-51471296 None:intergenic 40.0%
! AAGGTATCCTGACTTGAAAG+AGG - chr1_1:51471544-51471563 Msa0027230:intron 40.0%
TTGCAATTGCAAAGCATGCT+TGG - chr1_1:51471604-51471623 Msa0027230:intron 40.0%
GAACTGACCTTGATAAGTAC+AGG + chr1_1:51471635-51471654 None:intergenic 40.0%
! GTGATAATCTGGTTCACTAC+AGG - chr1_1:51471708-51471727 Msa0027230:intron 40.0%
!! TCATGGTCATTGTTGGTTTC+TGG + chr1_1:51471748-51471767 None:intergenic 40.0%
AGAAACCAACAATGACCATG+AGG - chr1_1:51471747-51471766 Msa0027230:intron 40.0%
TGAAGAACAAATGGCTGAGA+AGG - chr1_1:51471825-51471844 Msa0027230:CDS 40.0%
GAGATAGAAGCAAAGAGACA+AGG - chr1_1:51471847-51471866 Msa0027230:CDS 40.0%
ATTGCAAGAAGTGAGACTCT+TGG + chr1_1:51471883-51471902 None:intergenic 40.0%
!!! GTTGCTTTTCTCATGCTTCA+TGG - chr1_1:51471946-51471965 Msa0027230:intron 40.0%
!! TCTTTGGGATGAACATTGCA+GGG - chr1_1:51472132-51472151 Msa0027230:intron 40.0%
!!! CAGTACACACGCTCTTTTTT+AGG + chr1_1:51472197-51472216 None:intergenic 40.0%
! CTAAAAAAGAGCGTGTGTAC+TGG - chr1_1:51472195-51472214 Msa0027230:intron 40.0%
! AGCATTTTGTACAGCTTCTG+TGG + chr1_1:51472328-51472347 None:intergenic 40.0%
! GAGTTTGAGTTTATCTTCCG+AGG - chr1_1:51472419-51472438 Msa0027230:intron 40.0%
TCTTGACCATTCACGAATCT+CGG + chr1_1:51472519-51472538 None:intergenic 40.0%
ATTCGTGAATGGTCAAGATC+TGG - chr1_1:51472521-51472540 Msa0027230:intron 40.0%
!!! TCACAATCATCATCGGCTTT+TGG + chr1_1:51472581-51472600 None:intergenic 40.0%
GAAGTATGCTTCTCAGTTCA+AGG + chr1_1:51472613-51472632 None:intergenic 40.0%
! AACTCGGAGATGCAATTTTG+TGG + chr1_1:51472635-51472654 None:intergenic 40.0%
CTGACATACACAATAGCACA+AGG - chr1_1:51472756-51472775 Msa0027230:CDS 40.0%
CATACACAATAGCACAAGGA+AGG - chr1_1:51472760-51472779 Msa0027230:CDS 40.0%
AGAACTTCTTATACTGTCCC+AGG - chr1_1:51472807-51472826 Msa0027230:CDS 40.0%
GAACTTCTTATACTGTCCCA+GGG - chr1_1:51472808-51472827 Msa0027230:CDS 40.0%
GCTTGGTATTACGTATCTGA+CGG + chr1_1:51472967-51472986 None:intergenic 40.0%
ACTGTCCGCCAAAAATTAGT+TGG + chr1_1:51473334-51473353 None:intergenic 40.0%
ATAGGACTTTAACCTTGTGC+TGG + chr1_1:51473416-51473435 None:intergenic 40.0%
TGAGAAATTGAGAGACACTG+AGG + chr1_1:51473556-51473575 None:intergenic 40.0%
!! CAAGGGCAACAAAAAGTACT+TGG + chr1_1:51473648-51473667 None:intergenic 40.0%
AATACAACTAGGGGATGCAA+GGG + chr1_1:51473665-51473684 None:intergenic 40.0%
! TCTGAGATGTTGATTGATGC+AGG - chr1_1:51473806-51473825 Msa0027230:CDS 40.0%
! CTGAGATGTTGATTGATGCA+GGG - chr1_1:51473807-51473826 Msa0027230:CDS 40.0%
ATATGAACTCGGCACAATGA+CGG + chr1_1:51473956-51473975 None:intergenic 40.0%
! AGATGTTTTACAGCCAGACA+TGG - chr1_1:51474046-51474065 Msa0027230:intron 40.0%
! GATGTTTTACAGCCAGACAT+GGG - chr1_1:51474047-51474066 Msa0027230:intron 40.0%
CTGCATCTGACATATCACAA+TGG + chr1_1:51474139-51474158 None:intergenic 40.0%
CATGGTGTAACAGCTTACAA+AGG + chr1_1:51474295-51474314 None:intergenic 40.0%
GGCATGTACTTGAAACTACA+AGG + chr1_1:51474327-51474346 None:intergenic 40.0%
ATGAAGCACAGACAAAGAAC+TGG + chr1_1:51474577-51474596 None:intergenic 40.0%
TCATATTGCTGAAGTGAAGC+TGG - chr1_1:51474694-51474713 Msa0027230:intron 40.0%
TGAAGTGAAGCTGGATTCTA+AGG - chr1_1:51474703-51474722 Msa0027230:intron 40.0%
GAAGTGAAGCTGGATTCTAA+GGG - chr1_1:51474704-51474723 Msa0027230:intron 40.0%
CGATTTGTGGAAAATGGAAG+TGG - chr1_1:51474875-51474894 Msa0027230:CDS 40.0%
GTTGGGGGAAATTCTTTAGA+CGG - chr1_1:51474962-51474981 Msa0027230:CDS 40.0%
GAGAGAGGATGTACCTAAAT+TGG - chr1_1:51475006-51475025 Msa0027230:CDS 40.0%
!! AGAAGCATTTCAGAGAGTTC+AGG - chr1_1:51475041-51475060 Msa0027230:CDS 40.0%
TTGATGCTATCTCTCCTTGT+CGG - chr1_1:51475251-51475270 Msa0027230:CDS 40.0%
GGATACACATGAGTACTTCT+TGG + chr1_1:51475336-51475355 None:intergenic 40.0%
ATTCAAGATGTACCCAAACC+CGG + chr1_1:51475428-51475447 None:intergenic 40.0%
AAAACGTCTGATCATGGATG+GGG + chr1_1:51475885-51475904 None:intergenic 40.0%
CGAGCATAAAAAGAGGCTTA+AGG - chr1_1:51475915-51475934 Msa0027230:CDS 40.0%
GCATAAAAAGAGGCTTAAGG+AGG - chr1_1:51475918-51475937 Msa0027230:CDS 40.0%
AGCTTCTGAACAAAAGTCCA+GGG + chr1_1:51476058-51476077 None:intergenic 40.0%
! TGGACTTTTGTTCAGAAGCT+GGG - chr1_1:51476058-51476077 Msa0027230:intron 40.0%
ATACCTTCAGATTTCGGACT+TGG + chr1_1:51476117-51476136 None:intergenic 40.0%
GCCACAAAGTGTATATGTTG+CGG - chr1_1:51476192-51476211 Msa0027230:intron 40.0%
ACCGCAACATATACACTTTG+TGG + chr1_1:51476196-51476215 None:intergenic 40.0%
! ATGTTGCGGTTGTGAGTTTT+AGG - chr1_1:51476206-51476225 Msa0027230:intron 40.0%
GTCCCCATGAATATACTGAT+GGG + chr1_1:51476284-51476303 None:intergenic 40.0%
AGTCCCCATGAATATACTGA+TGG + chr1_1:51476285-51476304 None:intergenic 40.0%
TTCATGGGGACTGATATTCT+TGG - chr1_1:51476293-51476312 Msa0027230:intron 40.0%
TCATGGGGACTGATATTCTT+GGG - chr1_1:51476294-51476313 Msa0027230:intron 40.0%
GACAAAATCAAGTGCAACCT+TGG + chr1_1:51476567-51476586 None:intergenic 40.0%
! AAGCACTCGCCAATATTTTC+AGG + chr1_1:51476593-51476612 None:intergenic 40.0%
TCTGCAGACTTGTGATTTAC+TGG + chr1_1:51476644-51476663 None:intergenic 40.0%
AGTAAATCACAAGTCTGCAG+AGG - chr1_1:51476643-51476662 Msa0027230:intron 40.0%
!!! GCTGTTTTAGAATCTGGGTT+TGG - chr1_1:51476799-51476818 Msa0027230:intron 40.0%
! AGAATCTGGGTTTGGCTTAT+TGG - chr1_1:51476807-51476826 Msa0027230:intron 40.0%
AACATGACAGTGACATCACT+AGG + chr1_1:51476866-51476885 None:intergenic 40.0%
GTCCAGATCCAAACACTAAT+AGG - chr1_1:51476892-51476911 Msa0027230:intron 40.0%
CGTCTTGATTCTAAACCACA+AGG - chr1_1:51476982-51477001 Msa0027230:CDS 40.0%
GATTGCAAACTTTAGGCCTA+TGG - chr1_1:51477276-51477295 Msa0027230:CDS 40.0%
CTCAGAGATTGAATCTGGAT+AGG - chr1_1:51477501-51477520 Msa0027230:CDS 40.0%
! CAACACAGTTGCTTTCACAG+GGG - chr1_1:51470181-51470200 Msa0027230:three_prime_UTR 45.0%
GCATCAACAGAAGCTTCATC+AGG + chr1_1:51470245-51470264 None:intergenic 45.0%
TTTCTGCCACGTTTCTTTGC+CGG + chr1_1:51470278-51470297 None:intergenic 45.0%
! TCTCACACTTTCGCCCTTTT+CGG + chr1_1:51470321-51470340 None:intergenic 45.0%
! AAAAGGGCGAAAGTGTGAGA+AGG - chr1_1:51470321-51470340 Msa0027230:intron 45.0%
AGATTAAGGGGAAACGTGGT+AGG - chr1_1:51470423-51470442 Msa0027230:intron 45.0%
GAAACGTGGTAGGAAGAAGA+AGG - chr1_1:51470433-51470452 Msa0027230:intron 45.0%
AGGAAGAAGAAGGTGGCAAT+TGG - chr1_1:51470443-51470462 Msa0027230:intron 45.0%
AAGAAGGTGGCAATTGGTGT+CGG - chr1_1:51470449-51470468 Msa0027230:intron 45.0%
TGAAATCAATGCTGCTCAGG+AGG - chr1_1:51470481-51470500 Msa0027230:CDS 45.0%
GAAATCAATGCTGCTCAGGA+GGG - chr1_1:51470482-51470501 Msa0027230:CDS 45.0%
AAATCAATGCTGCTCAGGAG+GGG - chr1_1:51470483-51470502 Msa0027230:CDS 45.0%
TGAAATGCACGGAATGCAAC+CGG - chr1_1:51470736-51470755 Msa0027230:intron 45.0%
CCCTTAAACCCAATGCCTTA+AGG + chr1_1:51470957-51470976 None:intergenic 45.0%
AAAGAACTTCCACTTGAGGG+GGG + chr1_1:51471040-51471059 None:intergenic 45.0%
GAAAGAACTTCCACTTGAGG+GGG + chr1_1:51471041-51471060 None:intergenic 45.0%
AACGGTGACTTTGACAATGG+CGG + chr1_1:51471093-51471112 None:intergenic 45.0%
TCCAACGGTGACTTTGACAA+TGG + chr1_1:51471096-51471115 None:intergenic 45.0%
CGACAATGGTATCAGAGTCA+GGG + chr1_1:51471169-51471188 None:intergenic 45.0%
CCTGACTCTGATACCATTGT+CGG - chr1_1:51471167-51471186 Msa0027230:CDS 45.0%
CTGACTCTGATACCATTGTC+GGG - chr1_1:51471168-51471187 Msa0027230:CDS 45.0%
AGTCTGGGGATTGTCTACAT+TGG - chr1_1:51471201-51471220 Msa0027230:intron 45.0%
GTCTGGGGATTGTCTACATT+GGG - chr1_1:51471202-51471221 Msa0027230:intron 45.0%
AGCAACCACACAAGTGAGTT+TGG - chr1_1:51471230-51471249 Msa0027230:intron 45.0%
GGTATCCAAACTCACTTGTG+TGG + chr1_1:51471238-51471257 None:intergenic 45.0%
! GTATCCTGACTTGAAAGAGG+AGG - chr1_1:51471547-51471566 Msa0027230:intron 45.0%
! ATGTCCTCCTCTTTCAAGTC+AGG + chr1_1:51471554-51471573 None:intergenic 45.0%
GACATTGCCAAGAAATGTCC+AGG - chr1_1:51471569-51471588 Msa0027230:intron 45.0%
ACAGCATCCTGGACATTTCT+TGG + chr1_1:51471579-51471598 None:intergenic 45.0%
AAGAAATGTCCAGGATGCTG+TGG - chr1_1:51471578-51471597 Msa0027230:intron 45.0%
TTGCAATTACCACAGCATCC+TGG + chr1_1:51471590-51471609 None:intergenic 45.0%
GGACTCACCTGTACTTATCA+AGG - chr1_1:51471625-51471644 Msa0027230:CDS 45.0%
CTCAACCTCATGGTCATTGT+TGG + chr1_1:51471755-51471774 None:intergenic 45.0%
!! GTCTTTGGGATGAACATTGC+AGG - chr1_1:51472131-51472150 Msa0027230:intron 45.0%
! AAAAGAGCGTGTGTACTGGT+AGG - chr1_1:51472199-51472218 Msa0027230:intron 45.0%
! AAAGAGCGTGTGTACTGGTA+GGG - chr1_1:51472200-51472219 Msa0027230:intron 45.0%
CTTGACCATTCACGAATCTC+GGG + chr1_1:51472518-51472537 None:intergenic 45.0%
GTGAATGGTCAAGATCTGGA+TGG - chr1_1:51472525-51472544 Msa0027230:intron 45.0%
!!! TCATCATCGGCTTTTGGACA+GGG + chr1_1:51472575-51472594 None:intergenic 45.0%
!!! ATCATCATCGGCTTTTGGAC+AGG + chr1_1:51472576-51472595 None:intergenic 45.0%
GCCGATGATGATTGTGATCA+TGG - chr1_1:51472584-51472603 Msa0027230:intron 45.0%
CTGTGGAGACTTCTGATAGT+AGG - chr1_1:51472702-51472721 Msa0027230:CDS 45.0%
! TTTCAATGGCACTGGAGCAA+AGG - chr1_1:51472863-51472882 Msa0027230:CDS 45.0%
! TTCAATGGCACTGGAGCAAA+GGG - chr1_1:51472864-51472883 Msa0027230:CDS 45.0%
AATGCACGCCACATGACAAA+CGG + chr1_1:51472944-51472963 None:intergenic 45.0%
!! TGATTGCTTGGATTGGTGTG+AGG - chr1_1:51473015-51473034 Msa0027230:CDS 45.0%
GAATACAACTAGGGGATGCA+AGG + chr1_1:51473666-51473685 None:intergenic 45.0%
TTACTGGGTACACAAAGGCT+CGG - chr1_1:51473853-51473872 Msa0027230:CDS 45.0%
TATGAACTCGGCACAATGAC+GGG + chr1_1:51473955-51473974 None:intergenic 45.0%
CGGCAAGGAAGATATGAACT+CGG + chr1_1:51473967-51473986 None:intergenic 45.0%
CTTTAGGCAACTTCACAGCA+AGG + chr1_1:51474028-51474047 None:intergenic 45.0%
!!! TATGTTTTTGGGCCCATGTC+TGG + chr1_1:51474062-51474081 None:intergenic 45.0%
! TATGGATTTGCTCAGGAGCT+TGG - chr1_1:51474089-51474108 Msa0027230:intron 45.0%
! ATGGATTTGCTCAGGAGCTT+GGG - chr1_1:51474090-51474109 Msa0027230:intron 45.0%
ACTACAAGGCTAACAGCTCA+TGG + chr1_1:51474313-51474332 None:intergenic 45.0%
GGGAGCTACATGGTGATAAT+CGG - chr1_1:51474777-51474796 Msa0027230:CDS 45.0%
GGAGCTACATGGTGATAATC+GGG - chr1_1:51474778-51474797 Msa0027230:CDS 45.0%
CTACATGGTGATAATCGGGA+CGG - chr1_1:51474782-51474801 Msa0027230:CDS 45.0%
ATTCTTTAGACGGTGCTCTC+TGG - chr1_1:51474972-51474991 Msa0027230:CDS 45.0%
TTCTTTAGACGGTGCTCTCT+GGG - chr1_1:51474973-51474992 Msa0027230:CDS 45.0%
!! GTGCTCTCTGGGATATCTTT+CGG - chr1_1:51474984-51475003 Msa0027230:CDS 45.0%
!! CCTGCTTTAAAGGAGAGCAA+TGG + chr1_1:51475072-51475091 None:intergenic 45.0%
!! CCATTGCTCTCCTTTAAAGC+AGG - chr1_1:51475069-51475088 Msa0027230:CDS 45.0%
AATTGTGTGTGTGTCCGACA+AGG + chr1_1:51475268-51475287 None:intergenic 45.0%
ACAGAGTTGTGGGTACATAC+TGG - chr1_1:51475307-51475326 Msa0027230:CDS 45.0%
TGGTACTTACACACGAGTAC+CGG - chr1_1:51475406-51475425 Msa0027230:CDS 45.0%
!! AGATACCAGCTCTGAAGCAT+GGG + chr1_1:51475459-51475478 None:intergenic 45.0%
!! AAGATACCAGCTCTGAAGCA+TGG + chr1_1:51475460-51475479 None:intergenic 45.0%
TTCAGAGCTGGTATCTTACC+TGG - chr1_1:51475463-51475482 Msa0027230:intron 45.0%
TCAGAGCTGGTATCTTACCT+GGG - chr1_1:51475464-51475483 Msa0027230:intron 45.0%
TACATGACAGTCTTTGGGTC+AGG - chr1_1:51475514-51475533 Msa0027230:intron 45.0%
ACATGACAGTCTTTGGGTCA+GGG - chr1_1:51475515-51475534 Msa0027230:intron 45.0%
AGTCTTTGGGTCAGGGATAT+TGG - chr1_1:51475522-51475541 Msa0027230:intron 45.0%
AGTCTCCCACCATAAGTTCA+GGG - chr1_1:51475572-51475591 Msa0027230:CDS 45.0%
AAAGTTCACTCGACAGACGA+AGG - chr1_1:51475761-51475780 Msa0027230:intron 45.0%
AAGTTCACTCGACAGACGAA+GGG - chr1_1:51475762-51475781 Msa0027230:intron 45.0%
TAGATGGCTAGGAAGACTGA+TGG - chr1_1:51475796-51475815 Msa0027230:intron 45.0%
AAGAGGCTTAAGGAGGAGTA+TGG - chr1_1:51475925-51475944 Msa0027230:CDS 45.0%
GACTTGTAGGAATTGAACCC+TGG - chr1_1:51476038-51476057 Msa0027230:intron 45.0%
CAGCTTCTGAACAAAAGTCC+AGG + chr1_1:51476059-51476078 None:intergenic 45.0%
! CTGGACTTTTGTTCAGAAGC+TGG - chr1_1:51476057-51476076 Msa0027230:intron 45.0%
!!! GATGCTGTTTTCATTCCAGC+TGG - chr1_1:51476082-51476101 Msa0027230:intron 45.0%
!! TTCAGATTTCGGACTTGGTG+GGG + chr1_1:51476112-51476131 None:intergenic 45.0%
! CTTCAGATTTCGGACTTGGT+GGG + chr1_1:51476113-51476132 None:intergenic 45.0%
CTGATGGGAATCACAGTCTT+GGG + chr1_1:51476269-51476288 None:intergenic 45.0%
ACTGATGGGAATCACAGTCT+TGG + chr1_1:51476270-51476289 None:intergenic 45.0%
! CTTGGTGCATGACTGCAAAA+CGG + chr1_1:51476549-51476568 None:intergenic 45.0%
CAAGTCTGCAGAGGACAAAT+TGG - chr1_1:51476652-51476671 Msa0027230:intron 45.0%
GTGACTTAGTTAGCACCTTG+TGG + chr1_1:51477000-51477019 None:intergenic 45.0%
TTACAGGTCTGGAGAAACCA+AGG - chr1_1:51477454-51477473 Msa0027230:CDS 45.0%
GTAGTTAGGTGTGGTGATCT+TGG - chr1_1:51477542-51477561 Msa0027230:CDS 45.0%
AGCTTCATCAGGAGCAGCTA+TGG + chr1_1:51470234-51470253 None:intergenic 50.0%
AACGGAGAAGGAAGCCGAAA+AGG - chr1_1:51470304-51470323 Msa0027230:intron 50.0%
ACGGAGAAGGAAGCCGAAAA+GGG - chr1_1:51470305-51470324 Msa0027230:intron 50.0%
AACTAATGTGGAGGAGGAGC+TGG - chr1_1:51470391-51470410 Msa0027230:intron 50.0%
ACGTGGTAGGAAGAAGAAGG+TGG - chr1_1:51470436-51470455 Msa0027230:intron 50.0%
AATCAATGCTGCTCAGGAGG+GGG - chr1_1:51470484-51470503 Msa0027230:CDS 50.0%
TTATCTTGTGTGGGGTCACG+AGG - chr1_1:51470856-51470875 Msa0027230:intron 50.0%
TATCTTGTGTGGGGTCACGA+GGG - chr1_1:51470857-51470876 Msa0027230:intron 50.0%
! TAGTTGCTCTGAGCCCAATG+GGG + chr1_1:51470898-51470917 None:intergenic 50.0%
! CTAGTTGCTCTGAGCCCAAT+GGG + chr1_1:51470899-51470918 None:intergenic 50.0%
! TCTAGTTGCTCTGAGCCCAA+TGG + chr1_1:51470900-51470919 None:intergenic 50.0%
AAGAACTTCCACTTGAGGGG+GGG + chr1_1:51471039-51471058 None:intergenic 50.0%
GCCATTGTCAAAGTCACCGT+TGG - chr1_1:51471092-51471111 Msa0027230:CDS 50.0%
GTTCAGGTCATGGGTTCCAA+CGG + chr1_1:51471111-51471130 None:intergenic 50.0%
TCAGAGTCAGGGTTCGACAA+GGG + chr1_1:51471158-51471177 None:intergenic 50.0%
ATCAGAGTCAGGGTTCGACA+AGG + chr1_1:51471159-51471178 None:intergenic 50.0%
CCGACAATGGTATCAGAGTC+AGG + chr1_1:51471170-51471189 None:intergenic 50.0%
TACCATTGTCGGGTCATGAG+AGG - chr1_1:51471178-51471197 Msa0027230:intron 50.0%
! TGAGACTGGTTCAACAGCTG+AGG - chr1_1:51471386-51471405 Msa0027230:intron 50.0%
ACTTGGAGAGCTCAACCTCA+TGG + chr1_1:51471765-51471784 None:intergenic 50.0%
GCAAGAAGTGAGACTCTTGG+AGG + chr1_1:51471880-51471899 None:intergenic 50.0%
! AAGAGCGTGTGTACTGGTAG+GGG - chr1_1:51472201-51472220 Msa0027230:intron 50.0%
CATGCAGATAATCACGCCCT+CGG + chr1_1:51472439-51472458 None:intergenic 50.0%
CCATTCACGAATCTCGGGTT+GGG + chr1_1:51472513-51472532 None:intergenic 50.0%
ACCATTCACGAATCTCGGGT+TGG + chr1_1:51472514-51472533 None:intergenic 50.0%
TGACGTAGATTTACGGCCCT+GGG + chr1_1:51472827-51472846 None:intergenic 50.0%
ATGACGTAGATTTACGGCCC+TGG + chr1_1:51472828-51472847 None:intergenic 50.0%
GGCCGTAAATCTACGTCATG+AGG - chr1_1:51472829-51472848 Msa0027230:CDS 50.0%
! TCAATGGCACTGGAGCAAAG+GGG - chr1_1:51472865-51472884 Msa0027230:CDS 50.0%
AGACTAGATGGTCTGCTCTC+TGG - chr1_1:51473376-51473395 Msa0027230:intron 50.0%
GACTAGATGGTCTGCTCTCT+GGG - chr1_1:51473377-51473396 Msa0027230:intron 50.0%
CATGAAGAGTGACCAGCACA+AGG - chr1_1:51473401-51473420 Msa0027230:intron 50.0%
ATGAACTCGGCACAATGACG+GGG + chr1_1:51473954-51473973 None:intergenic 50.0%
AGCAGATCCATTGTCCTTCC+TGG - chr1_1:51474551-51474570 Msa0027230:intron 50.0%
AGACAAAGAACTGGCCAGGA+AGG + chr1_1:51474568-51474587 None:intergenic 50.0%
AGCACCTTGAGCAAGACAAG+AGG - chr1_1:51474756-51474775 Msa0027230:CDS 50.0%
GCACCTTGAGCAAGACAAGA+GGG - chr1_1:51474757-51474776 Msa0027230:CDS 50.0%
CAAGACAAGAGGGAGCTACA+TGG - chr1_1:51474767-51474786 Msa0027230:CDS 50.0%
CTGGGATATCTTTCGGAGAG+AGG - chr1_1:51474991-51475010 Msa0027230:CDS 50.0%
TGTCGGTGCAACAGAGTTGT+GGG - chr1_1:51475297-51475316 Msa0027230:CDS 50.0%
GGTACTTACACACGAGTACC+GGG - chr1_1:51475407-51475426 Msa0027230:CDS 50.0%
!! TTACACACGAGTACCGGGTT+TGG - chr1_1:51475412-51475431 Msa0027230:CDS 50.0%
!! TACACACGAGTACCGGGTTT+GGG - chr1_1:51475413-51475432 Msa0027230:CDS 50.0%
GAGACTGAGTGAATGCAGGT+GGG + chr1_1:51475558-51475577 None:intergenic 50.0%
CAGTCTCCCACCATAAGTTC+AGG - chr1_1:51475571-51475590 Msa0027230:CDS 50.0%
GTCTCCCACCATAAGTTCAG+GGG - chr1_1:51475573-51475592 Msa0027230:CDS 50.0%
AAGGGCCTGCTGTATGTAGA+TGG - chr1_1:51475780-51475799 Msa0027230:intron 50.0%
CCTAGCCATCTACATACAGC+AGG + chr1_1:51475788-51475807 None:intergenic 50.0%
CCTGCTGTATGTAGATGGCT+AGG - chr1_1:51475785-51475804 Msa0027230:intron 50.0%
CCTTCAGATTTCGGACTTGG+TGG + chr1_1:51476114-51476133 None:intergenic 50.0%
CCACCAAGTCCGAAATCTGA+AGG - chr1_1:51476111-51476130 Msa0027230:CDS 50.0%
! CGTTTTGCAGTCATGCACCA+AGG - chr1_1:51476547-51476566 Msa0027230:intron 50.0%
CGAGTGCTTTCGTTTGACAG+AGG - chr1_1:51476604-51476623 Msa0027230:intron 50.0%
GTCTGCAGAGGACAAATTGG+AGG - chr1_1:51476655-51476674 Msa0027230:intron 50.0%
GCTTGATCTGGTCGAGAAGT+TGG - chr1_1:51477237-51477256 Msa0027230:CDS 50.0%
TGATCTGGTCGAGAAGTTGG+AGG - chr1_1:51477240-51477259 Msa0027230:CDS 50.0%
TCGAGAAGTTGGAGGAAGCA+AGG - chr1_1:51477248-51477267 Msa0027230:CDS 50.0%
TTGAGTCGCGTAGTTAGGTG+TGG - chr1_1:51477533-51477552 Msa0027230:CDS 50.0%
GTTATGTCTGGCACACCTTG+AGG - chr1_1:51477606-51477625 Msa0027230:five_prime_UTR 50.0%
ACGTTTCTTTGCCGGAGGAG+CGG + chr1_1:51470270-51470289 None:intergenic 55.0%
TGAGAAGGAGTGAGCGTGCT+AGG - chr1_1:51470336-51470355 Msa0027230:intron 55.0%
GGGCAGGGTTGTGAAATGCA+CGG - chr1_1:51470725-51470744 Msa0027230:intron 55.0%
ATCTTGTGTGGGGTCACGAG+GGG - chr1_1:51470858-51470877 Msa0027230:intron 55.0%
! AGTTGCTCTGAGCCCAATGG+GGG + chr1_1:51470897-51470916 None:intergenic 55.0%
CATTTATGCCCCCCCTCAAG+TGG - chr1_1:51471028-51471047 Msa0027230:intron 55.0%
GGGTTCGACAAGGGATCAAC+CGG + chr1_1:51471149-51471168 None:intergenic 55.0%
CTCCTCTCATGACCCGACAA+TGG + chr1_1:51471183-51471202 None:intergenic 55.0%
TCGGGTCATGAGAGGAGTCT+GGG - chr1_1:51471186-51471205 Msa0027230:intron 55.0%
AAGGTTGGGCACTCTGTGAG+AGG + chr1_1:51471301-51471320 None:intergenic 55.0%
! GACTGGTTCAACAGCTGAGG+AGG - chr1_1:51471389-51471408 Msa0027230:intron 55.0%
CACGAAGCTCGCAGCAACAA+AGG + chr1_1:51472367-51472386 None:intergenic 55.0%
CTTTGTTGCTGCGAGCTTCG+TGG - chr1_1:51472365-51472384 Msa0027230:intron 55.0%
! CTTCGTGGTGGGAAGCTTCT+AGG - chr1_1:51472380-51472399 Msa0027230:intron 55.0%
! CGAGGGCGTGATTATCTGCA+TGG - chr1_1:51472437-51472456 Msa0027230:intron 55.0%
GGGCGTGATTATCTGCATGG+TGG - chr1_1:51472440-51472459 Msa0027230:intron 55.0%
CCCAACCCGAGATTCGTGAA+TGG - chr1_1:51472510-51472529 Msa0027230:intron 55.0%
! GGATGGCTTGCAGACAGTGA+TGG - chr1_1:51472542-51472561 Msa0027230:intron 55.0%
GCTGGGAACCGTTTGTCATG+TGG - chr1_1:51472933-51472952 Msa0027230:CDS 55.0%
!! CTCGGCTGGACTGGCTTAAT+TGG - chr1_1:51473871-51473890 Msa0027230:CDS 55.0%
!! GGACTGGCTTAATTGGCCTC+AGG - chr1_1:51473878-51473897 Msa0027230:CDS 55.0%
! GATTTGCTCAGGAGCTTGGG+CGG - chr1_1:51474093-51474112 Msa0027230:intron 55.0%
ATTTGCTCAGGAGCTTGGGC+GGG - chr1_1:51474094-51474113 Msa0027230:intron 55.0%
GAACTGGCCAGGAAGGACAA+TGG + chr1_1:51474561-51474580 None:intergenic 55.0%
GCACAGACAAAGAACTGGCC+AGG + chr1_1:51474572-51474591 None:intergenic 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG + chr1_1:51474763-51474782 None:intergenic 55.0%
! GTGTCGGTGCAACAGAGTTG+TGG - chr1_1:51475296-51475315 Msa0027230:CDS 55.0%
GGAGACTGAGTGAATGCAGG+TGG + chr1_1:51475559-51475578 None:intergenic 55.0%
GTGGGAGACTGAGTGAATGC+AGG + chr1_1:51475562-51475581 None:intergenic 55.0%
GCAGCCCCTGAACTTATGGT+GGG + chr1_1:51475580-51475599 None:intergenic 55.0%
AGCAGCCCCTGAACTTATGG+TGG + chr1_1:51475581-51475600 None:intergenic 55.0%
ACCATAAGTTCAGGGGCTGC+TGG - chr1_1:51475580-51475599 Msa0027230:intron 55.0%
ACCAGCAGCCCCTGAACTTA+TGG + chr1_1:51475584-51475603 None:intergenic 55.0%
GTTGTCTTCTTCCCCCGCCA+TGG + chr1_1:51470156-51470175 None:intergenic 60.0%
TGTTGATGCTGCCGCTCCTC+CGG - chr1_1:51470256-51470275 Msa0027230:exon 60.0%
GCTCCTCCGGCAAAGAAACG+TGG - chr1_1:51470269-51470288 Msa0027230:intron 60.0%
CTGCCACGTTTCTTTGCCGG+AGG + chr1_1:51470275-51470294 None:intergenic 60.0%
GTCGGGTCATGAGAGGAGTC+TGG - chr1_1:51471185-51471204 Msa0027230:intron 60.0%
CGGGTCATGAGAGGAGTCTG+GGG - chr1_1:51471187-51471206 Msa0027230:intron 60.0%
TGTTGCTGCGAGCTTCGTGG+TGG - chr1_1:51472368-51472387 Msa0027230:intron 60.0%
GTTGCTGCGAGCTTCGTGGT+GGG - chr1_1:51472369-51472388 Msa0027230:intron 60.0%
! CGTGGTGGGAAGCTTCTAGG+TGG - chr1_1:51472383-51472402 Msa0027230:intron 60.0%
TGGGTACACAAAGGCTCGGC+TGG - chr1_1:51473857-51473876 Msa0027230:CDS 60.0%
ACACAAAGGCTCGGCTGGAC+TGG - chr1_1:51473862-51473881 Msa0027230:CDS 60.0%
TTTGCTCAGGAGCTTGGGCG+GGG - chr1_1:51474095-51474114 Msa0027230:intron 60.0%
GGAGTCCCATGCTTCAGAGC+TGG - chr1_1:51475451-51475470 Msa0027230:intron 60.0%
CTGAGCTGGAGATAGAGCCC+AGG + chr1_1:51475484-51475503 None:intergenic 60.0%
! ACTTGGTGGGGACAACCAGC+TGG + chr1_1:51476100-51476119 None:intergenic 60.0%
AGCCTTGGGACCACCCCCAT+TGG - chr1_1:51470881-51470900 Msa0027230:intron 65.0%
GCCTTGGGACCACCCCCATT+GGG - chr1_1:51470882-51470901 Msa0027230:intron 65.0%
! TGCTCTGAGCCCAATGGGGG+TGG + chr1_1:51470894-51470913 None:intergenic 65.0%
TGGGGTCACGAGGGGAGCCT+TGG - chr1_1:51470866-51470885 Msa0027230:intron 70.0%
GGGGTCACGAGGGGAGCCTT+GGG - chr1_1:51470867-51470886 Msa0027230:intron 70.0%
GCCCAATGGGGGTGGTCCCA+AGG + chr1_1:51470886-51470905 None:intergenic 70.0%
!! TCGGGTTGGGCAGCAGCACG+AGG + chr1_1:51472500-51472519 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51469934 51477811 51469934 ID=Msa0027230;Name=Msa0027230
chr1_1 mRNA 51469934 51477811 51469934 ID=Msa0027230-mRNA-1;Parent=Msa0027230;Name=Msa0027230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=221|0.41|0.38|1|1|1|13|324|890
chr1_1 exon 51469934 51470285 51469934 ID=Msa0027230-mRNA-1:exon:15035;Parent=Msa0027230-mRNA-1
chr1_1 exon 51470476 51470534 51470476 ID=Msa0027230-mRNA-1:exon:15034;Parent=Msa0027230-mRNA-1
chr1_1 exon 51471069 51471188 51471069 ID=Msa0027230-mRNA-1:exon:15033;Parent=Msa0027230-mRNA-1
chr1_1 exon 51471613 51471698 51471613 ID=Msa0027230-mRNA-1:exon:15032;Parent=Msa0027230-mRNA-1
chr1_1 exon 51471799 51471871 51471799 ID=Msa0027230-mRNA-1:exon:15031;Parent=Msa0027230-mRNA-1
chr1_1 exon 51472655 51473065 51472655 ID=Msa0027230-mRNA-1:exon:15030;Parent=Msa0027230-mRNA-1
chr1_1 exon 51473588 51473917 51473588 ID=Msa0027230-mRNA-1:exon:15029;Parent=Msa0027230-mRNA-1
chr1_1 exon 51474709 51475450 51474709 ID=Msa0027230-mRNA-1:exon:15028;Parent=Msa0027230-mRNA-1
chr1_1 exon 51475529 51475592 51475529 ID=Msa0027230-mRNA-1:exon:15027;Parent=Msa0027230-mRNA-1
chr1_1 exon 51475877 51476015 51475877 ID=Msa0027230-mRNA-1:exon:15026;Parent=Msa0027230-mRNA-1
chr1_1 exon 51476099 51476198 51476099 ID=Msa0027230-mRNA-1:exon:15025;Parent=Msa0027230-mRNA-1
chr1_1 exon 51476955 51477091 51476955 ID=Msa0027230-mRNA-1:exon:15024;Parent=Msa0027230-mRNA-1
chr1_1 exon 51477207 51477811 51477207 ID=Msa0027230-mRNA-1:exon:15023;Parent=Msa0027230-mRNA-1
chr1_1 five_prime_UTR 51477591 51477811 51477591 ID=Msa0027230-mRNA-1:five_prime_utr;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51477207 51477590 51477207 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51476955 51477091 51476955 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51476099 51476198 51476099 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51475877 51476015 51475877 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51475529 51475592 51475529 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51474709 51475450 51474709 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51473588 51473917 51473588 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51472655 51473065 51472655 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51471799 51471871 51471799 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51471613 51471698 51471613 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51471069 51471188 51471069 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51470476 51470534 51470476 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 CDS 51470258 51470285 51470258 ID=Msa0027230-mRNA-1:cds;Parent=Msa0027230-mRNA-1
chr1_1 three_prime_UTR 51469934 51470257 51469934 ID=Msa0027230-mRNA-1:three_prime_utr;Parent=Msa0027230-mRNA-1
Gene Sequence

>Msa0027230

ATGGCGGGGGAAGAAGACAACAACAACAACACAGTTGCTTTCACAGGGGAAGAATCCATTCCTGATAATCAAGAAACCATAGCTGCTCCTGATGAAGCTTCTGTTGATGCTGCCGCTCCTCCGGCAAAGAAACGTGGCAGAAAGAGAAAAACGGAGAAGGAAGCCGAAAAGGGCGAAAGTGTGAGAAGGAGTGAGCGTGCTAGGAAGAATAGTAGATCGTTGAATGAGGATTACTTAACTAATGTGGAGGAGGAGCTGGAACTGAAGAAGATTAAGGGGAAACGTGGTAGGAAGAAGAAGGTGGCAATTGGTGTCGGTGTTTCTGATGAAATCAATGCTGCTCAGGAGGGGGAGAAACCTGAATGCATTGAACAGCAACAGATGGGGATTGAAGATGTGTCCTTATTGGTCTGTAATAAGGACACTAATTGCCATCAATGTAAAAGAAATGACAAGGGCAGGGTTGTGAAATGCACGGAATGCAACCGGAAGAAATTTTGCATACCCTGTATTAACAGTTGGTATCCTGACTTGAAAGAGGAGGACATTGCCAAGAAATGTCCAGGATGCTGTGGTAATTGCAATTGCAAAGCATGCTTGGACTCACCTGTACTTATCAAGGCAATTAAAGAGAAGCCAGAAACCAACAATGACCATGAGGTTGAGCTCTCCAAGTATATGCTGAAAATACTTCTTCCGTATTTAAGACGATTGGATGAAGAACAAATGGCTGAGAAGGAGATAGAAGCAAAGAGACAAGGGATCTCACGTTCTGAGCTAAAAATAAAAGCCGCAGATATCCCTAAAAAAGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAAAATGCTCTTTTGACATTTGTCTCCTTTGTTGCTGCGAGCTTCGTGGTGGGAAGCTTCTAGGTGGTGCAGATCCAATCGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATCTGCATGGTGGAAATGATAATGAAGAGAGAGTAAATGAAAGTGAACCTCGTGCTGCTGCCCAACCCGAGATTCGTGAATGGTCAAGATCTGGATGGCTTGCAGACAGTGATGGTAGCATTCCCTGTCCAAAAGCCGATGATGATTGTGATCATGGTTTCCTTGAACTGAGAAGCATACTTCCACAAAATTGCATCTCCGAGTTAGTATGTAAAGCAAAAGAACATGAAGAAACAATTAAGCTTCAAGTTGCTGTGGAGACTTCTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTTTGAATGCATCTGACATACACAATAGCACAAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGAGAACTTCTTATACTGTCCCAGGGCCGTAAATCTACGTCATGAGGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTATAATTGTCAGCAATGTACTTGAATGTACATCAGGTTTAAGCTGGGAACCGTTTGTCATGTGGCGTGCATTCCGTCAGATACGTAATACCAAGCAAAAAACACTTTTGGATGTGAAAACTATTGATTGCTTGGATTGGTGTGAGGGAGATCTTAATTTGCACCAATTCTTTACTGGGTACACAAAGGCTCGGCTGGACTGGCTTAATTGGCCTCAGGTTTTGAAACTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTTCAAAGAATATACAGATCCTTTCAATGGTGTTCTAAACCTTGCTGTGAAGTTGCCTAAAGATGTTTTACAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCAGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAGCTGGATTCTAAGGGCATTAATGCCATTAAAAAACTGACACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCGGGACGGAGAGCCCAAGATTGACATGCTTGATAATTCATCTTCTTCCATAAAGGCTTCATATGAGCAAAATAGTGTTCGATTTGTGGAAAATGGAAGTGGAATATGTGATGAAAAGGTGGTTGATCCAGAGCTCAAAGAAGTTGATAAAGAAAATAGTTTATTGGTTGGGGGAAATTCTTTAGACGGTGCTCTCTGGGATATCTTTCGGAGAGAGGATGTACCTAAATTGGAAGAATATTTAAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTTTAAAGCAGGTTGTTCACCCCATCCATGATCAGACGTTTTATTTGACTATCGAGCATAAAAAGAGGCTTAAGGAGGAGTATGGAATTGAACCCTGGACTTTTGTTCAGAAGCTGGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATATTGGCGAGTGCTTTCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAAGTCTGCAGAGGACAAATTGGAGGTGAAGAAAATGATTATGTATGCTATGCTTGATCTGGTCGAGAAGTTGGAGGAAGCAAGGTCTGGAGAAACCAAGGTTCCTATGTAA
Protein sequence

>Msa0027230

MAGEEDNNNNTVAFTGEESIPDNQETIAAPDEASVDAAAPPAKKRGRKRKTEKEAEKGESVRRSERARKNSRSLNEDYLTNVEEELELKKIKGKRGRKKKVAIGVGVSDEINAAQEGEKPECIEQQQMGIEDVSLLVCNKDTNCHQCKRNDKGRVVKCTECNRKKFCIPCINSWYPDLKEEDIAKKCPGCCGNCNCKACLDSPVLIKAIKEKPETNNDHEVELSKYMLKILLPYLRRLDEEQMAEKEIEAKRQGISRSELKIKAADIPKKERVYCDNCKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGADPIEFEFIFRGRDYLHGGNDNEERVNESEPRAAAQPEIREWSRSGWLADSDGSIPCPKADDDCDHGFLELRSILPQNCISELVCKAKEHEETIKLQVAVETSDSRCSCLKPVLNASDIHNSTRKAASREDSSENFLYCPRAVNLRHEDLRHFQWHWSKGEPIIVSNVLECTSGLSWEPFVMWRAFRQIRNTKQKTLLDVKTIDCLDWCEGDLNLHQFFTGYTKARLDWLNWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPFKEYTDPFNGVLNLAVKLPKDVLQPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSKGINAIKKLTQKHLEQDKRELHGDNRDGEPKIDMLDNSSSSIKASYEQNSVRFVENGSGICDEKVVDPELKEVDKENSLLVGGNSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENIGECFRLTEEFRKLPVNHKSAEDKLEVKKMIMYAMLDLVEKLEEARSGETKVPM*