AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156160 MtrunA17_Chr7g0249531 99.027 411 2 2 1 410 1 410 0.0 799
Msa1156160 MtrunA17_Chr4g0021001 30.348 201 105 7 1 190 1 177 8.25e-16 78.2
Msa1156160 MtrunA17_Chr4g0021001 27.941 136 92 2 210 344 135 265 3.31e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156160 AT3G03340.2 76.829 410 87 4 1 410 79 480 0.0 540
Msa1156160 AT3G03340.1 76.829 410 87 4 1 410 1 402 0.0 539
Msa1156160 AT5G17440.1 81.250 320 57 2 1 320 1 317 0.0 524
Msa1156160 AT3G03340.3 80.938 320 58 2 1 320 1 317 0.0 521
Msa1156160 AT5G17440.2 80.634 284 52 2 1 284 1 281 1.04e-163 461
Msa1156160 AT5G51410.2 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1156160 AT5G51410.1 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1156160 AT5G51410.4 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1156160 AT5G51410.3 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1156160 AT5G51410.5 36.111 180 90 6 1 159 1 176 1.80e-16 80.5

Find 130 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCACATCCATAAGATTTA+TGG 0.151914 7_4:+44400010 None:intergenic
TTGGACAACTCAAGTATTTC+AGG 0.177903 7_4:+44404672 None:intergenic
TTGAAAGAAGCTGATAAATT+TGG 0.226607 7_4:-44404633 Msa1156160:intron
CGTCGATTAGCTGATCATTT+TGG 0.228452 7_4:-44401422 Msa1156160:CDS
GGGGTAAGTGTGGGACTATT+TGG 0.241411 7_4:+44405402 None:intergenic
ACTGAAACTCGATGAGTTTA+GGG 0.260026 7_4:+44405354 None:intergenic
AACTGAAACTCGATGAGTTT+AGG 0.268287 7_4:+44405353 None:intergenic
GCTTAGGTGTTGCAAAATTA+TGG 0.276294 7_4:-44399896 Msa1156160:three_prime_UTR
TGAAATTGCAATTGCGGCTT+TGG 0.289328 7_4:+44404804 None:intergenic
TAGATGCATTCAACAAAGAT+AGG 0.295715 7_4:-44403911 Msa1156160:CDS
GAAGCAACTGGACGTTCTTA+TGG 0.297108 7_4:-44405297 Msa1156160:CDS
GGTGCTAGCGGTGGTGGATT+TGG 0.300979 7_4:+44403867 None:intergenic
AGCAGCTGCCATAAATCTTA+TGG 0.318878 7_4:-44400018 Msa1156160:three_prime_UTR
TTTGGAGGGAAACTTCATTT+AGG 0.335267 7_4:-44401404 Msa1156160:CDS
GGTGAATGTGATAGGAAAAT+TGG 0.348156 7_4:-44404859 Msa1156160:CDS
TCTAATTTGTAATATTCTCT+TGG 0.351038 7_4:-44399846 Msa1156160:three_prime_UTR
TCACGAACTCTTTCAATTAA+CGG 0.377204 7_4:-44405186 Msa1156160:intron
GATGTTATAGATAAGCTTAT+TGG 0.385739 7_4:-44404880 Msa1156160:CDS
ATCTCTTGTGTTCGAGCATC+GGG 0.391648 7_4:+44403828 None:intergenic
CATGCACTTGCAGATCTTGA+AGG 0.403956 7_4:-44404192 Msa1156160:intron
CGAAAAGCATGGATGCTATA+CGG 0.405750 7_4:-44405319 Msa1156160:exon
AGCTGCAATGAGTGAACCTT+AGG 0.406940 7_4:+44405060 None:intergenic
GGAAGGGGTGCTAGCGGTGG+TGG 0.407725 7_4:+44403861 None:intergenic
ATGGTTTGATGTTGCTTTGC+GGG 0.411277 7_4:-44399877 Msa1156160:three_prime_UTR
TTGAAGAAGGCTGAGGATCT+TGG 0.418272 7_4:-44403792 Msa1156160:intron
CTCGTAACTATCAGTCCCTT+TGG 0.422514 7_4:+44404915 None:intergenic
ATCCAATGGTGGCTCCTGCC+TGG 0.424634 7_4:+44402031 None:intergenic
AAGCAACTGGACGTTCTTAT+GGG 0.432251 7_4:-44405296 Msa1156160:CDS
CCACGTTCACGGTCCCTACT+AGG 0.437974 7_4:+44400493 None:intergenic
AAGATAACTTACTTGAAGTT+CGG 0.438627 7_4:+44401355 None:intergenic
TGCAGATCTTGAAGGCTTGT+CGG 0.442278 7_4:-44404184 Msa1156160:intron
AACGGAGTAGGGATCGTGAC+AGG 0.443961 7_4:-44400519 Msa1156160:CDS
GGATGCTATACGGAAGCAAC+TGG 0.452696 7_4:-44405309 Msa1156160:CDS
CATCTCTTGTGTTCGAGCAT+CGG 0.458767 7_4:+44403827 None:intergenic
GGTGGATTTGGCAGAGGTTG+AGG 0.460137 7_4:+44403879 None:intergenic
CATTGTCTCGCCCTCGCTCA+TGG 0.461773 7_4:+44400464 None:intergenic
ATCTTGTTCAAGTAGTGGGG+TGG 0.461954 7_4:+44405381 None:intergenic
AATACTTGCGGTTAACTTCA+CGG 0.467208 7_4:+44405252 None:intergenic
TTAGATCTTGTTCAAGTAGT+GGG 0.467358 7_4:+44405377 None:intergenic
GTGGGTGTTGAACCTTGTCT+TGG 0.469863 7_4:-44399972 Msa1156160:three_prime_UTR
AGCTTATTGGTGAATGTGAT+AGG 0.470005 7_4:-44404867 Msa1156160:CDS
AATTAAAAGAGCAGACAAAC+AGG 0.474940 7_4:-44404121 Msa1156160:intron
TTCCAGGCAGGAGCCACCAT+TGG 0.478074 7_4:-44402033 Msa1156160:CDS
GGATATGAAGATTCGAGCTC+TGG 0.479032 7_4:-44404163 Msa1156160:CDS
ATCACAGCTTCCTTCCAGGC+AGG 0.481581 7_4:-44402045 Msa1156160:intron
AGGGCAACCAAGTCGATGAC+AGG 0.489701 7_4:+44399778 None:intergenic
CATATCCACGGTCTCTATCA+TGG 0.494619 7_4:+44400413 None:intergenic
CATGGCTCTCACCACGTTCA+CGG 0.499053 7_4:+44400482 None:intergenic
CTACGTGTGTGCGACATTTG+TGG 0.501100 7_4:-44401787 Msa1156160:CDS
ATCGTGACAGGGAGCCTAGT+AGG 0.501423 7_4:-44400507 Msa1156160:CDS
AGATGCATTCAACAAAGATA+GGG 0.509438 7_4:-44403910 Msa1156160:CDS
TTCAGTATCCGAAGTTACTC+AGG 0.515579 7_4:-44404785 Msa1156160:CDS
AATGGTGGCTCCTGCCTGGA+AGG 0.520384 7_4:+44402035 None:intergenic
GAAGTTCGGCCAACTTCTCA+CGG 0.524583 7_4:+44401369 None:intergenic
AGATTGATCGTCTTGATGAC+AGG 0.526184 7_4:-44400649 Msa1156160:CDS
GTTAGATCTTGTTCAAGTAG+TGG 0.527033 7_4:+44405376 None:intergenic
TATGCAAATCCGTGAGAAGT+TGG 0.527127 7_4:-44401378 Msa1156160:CDS
GATAAATGAAAAGTTGAAGA+AGG 0.528067 7_4:-44403805 Msa1156160:CDS
CATCAAGACGATCAATCTTA+CGG 0.529702 7_4:+44400654 None:intergenic
ATTGAACAATATCTGAATGA+TGG 0.531182 7_4:-44399930 Msa1156160:three_prime_UTR
CGAGCATCGGGAGTAACTAC+AGG 0.532576 7_4:+44403840 None:intergenic
TCTTGTTCAAGTAGTGGGGT+GGG 0.533880 7_4:+44405382 None:intergenic
TAGTGGGGTGGGGTAAGTGT+GGG 0.538484 7_4:+44405393 None:intergenic
ACAGATCAAAAGAACGGAGT+AGG 0.538832 7_4:-44400531 Msa1156160:intron
GTTTGCCGTCTTTATCTCGT+CGG 0.541242 7_4:-44405218 Msa1156160:CDS
GATGGATGTAACTTGAGCTT+AGG 0.542349 7_4:-44399912 Msa1156160:three_prime_UTR
GTAGTGGGGTGGGGTAAGTG+TGG 0.548250 7_4:+44405392 None:intergenic
ATAAGATGTGTAGTCTAGGT+GGG 0.550978 7_4:-44399990 Msa1156160:three_prime_UTR
TATGGTTTGATGTTGCTTTG+CGG 0.552375 7_4:-44399878 Msa1156160:three_prime_UTR
TAGTTACGAGAGGGAGTTGG+AGG 0.553553 7_4:-44404902 Msa1156160:CDS
TTTGTATGAACAGGTGAGCA+AGG 0.553610 7_4:-44402300 Msa1156160:intron
TCGTGACAGGGAGCCTAGTA+GGG 0.554514 7_4:-44400506 Msa1156160:CDS
TGATAGTTACGAGAGGGAGT+TGG 0.555551 7_4:-44404905 Msa1156160:CDS
AGAGGCTGAAGCACTTAAGA+AGG 0.556383 7_4:-44402247 Msa1156160:intron
ACCGTGGATATGATCGAGAT+CGG 0.556484 7_4:-44400402 Msa1156160:CDS
ATGAGGAAGCTAAATCCAAA+GGG 0.556688 7_4:-44404930 Msa1156160:CDS
CAGATCAAAAGAACGGAGTA+GGG 0.561355 7_4:-44400530 Msa1156160:CDS
GGATACTGAAATTGCAATTG+CGG 0.561931 7_4:+44404798 None:intergenic
TGATGAGGCACAGAAAGCAT+TGG 0.562627 7_4:-44402271 Msa1156160:CDS
CTTGTTCAAGTAGTGGGGTG+GGG 0.565857 7_4:+44405383 None:intergenic
TGTGATAAGATGTGTAGTCT+AGG 0.567273 7_4:-44399994 Msa1156160:three_prime_UTR
CTAGAGATTATGATCGTCAC+AGG 0.572592 7_4:-44400318 Msa1156160:intron
CCGTGGATATGATCGAGATC+GGG 0.578018 7_4:-44400401 Msa1156160:CDS
AGCGGTGGTGGATTTGGCAG+AGG 0.578278 7_4:+44403873 None:intergenic
GGATATGGGTCCTTGCCCTA+AGG 0.580760 7_4:-44405076 Msa1156160:CDS
GCGACTTCTTGAATCATAGC+GGG 0.581845 7_4:+44400366 None:intergenic
TAGATCTTGTTCAAGTAGTG+GGG 0.582349 7_4:+44405378 None:intergenic
GTAGGAGCAGAGATCGTGAC+AGG 0.584050 7_4:-44400438 Msa1156160:CDS
TAGAGCTCTTAAGCGTCTTG+AGG 0.585351 7_4:-44404836 Msa1156160:CDS
TCGGGAGTAACTACAGGAAG+GGG 0.585363 7_4:+44403846 None:intergenic
GCTGCAATGAGTGAACCTTA+GGG 0.585660 7_4:+44405061 None:intergenic
TGAAAAGTTGAAGAAGGCTG+AGG 0.585802 7_4:-44403799 Msa1156160:CDS
TATGAGGAAGCTAAATCCAA+AGG 0.585843 7_4:-44404931 Msa1156160:CDS
GGCACAGAAAGCATTGGAAG+AGG 0.587050 7_4:-44402265 Msa1156160:CDS
ATCGGGAGTAACTACAGGAA+GGG 0.587672 7_4:+44403845 None:intergenic
TTGTTCCAGATCGAAAAGCA+TGG 0.594445 7_4:-44405330 Msa1156160:exon
ACAGGAAGGGGTGCTAGCGG+TGG 0.594793 7_4:+44403858 None:intergenic
GCTCTCGAGATCGTGACCTC+CGG 0.595184 7_4:+44400344 None:intergenic
CATCGGGAGTAACTACAGGA+AGG 0.598826 7_4:+44403844 None:intergenic
AAAATTATTTGTCCAAGACA+AGG 0.599616 7_4:+44399960 None:intergenic
TCGAGCTCTGGAGATTGTAG+AGG 0.600295 7_4:-44404151 Msa1156160:CDS
AATCACCACCTGAGTAACTT+CGG 0.604512 7_4:+44404777 None:intergenic
GTTAATTGAAAGAGTTCGTG+AGG 0.604661 7_4:+44405188 None:intergenic
CCTAGTAGGGACCGTGAACG+TGG 0.608938 7_4:-44400493 Msa1156160:CDS
GTGGTGAGAGCCATGAGCGA+GGG 0.612251 7_4:-44400474 Msa1156160:CDS
AATGAGTGAACCTTAGGGCA+AGG 0.622000 7_4:+44405066 None:intergenic
GATAAGATGTGTAGTCTAGG+TGG 0.624297 7_4:-44399991 Msa1156160:three_prime_UTR
CCCGATCTCGATCATATCCA+CGG 0.629250 7_4:+44400401 None:intergenic
CGTGGTGAGAGCCATGAGCG+AGG 0.635589 7_4:-44400475 Msa1156160:CDS
AGTACACAGCTGCTGATGTG+CGG 0.638522 7_4:-44402001 Msa1156160:CDS
AAAGACCGACGAGATAAAGA+CGG 0.644940 7_4:+44405213 None:intergenic
ATATGCACAGATCAAAAGAA+CGG 0.645466 7_4:-44400537 Msa1156160:intron
CTTATGGGAGCCAATCGTAA+CGG 0.646630 7_4:-44405281 Msa1156160:CDS
ACGGAGTAGGGATCGTGACA+GGG 0.652302 7_4:-44400518 Msa1156160:CDS
GGGCAACCAAGTCGATGACA+GGG 0.652657 7_4:+44399779 None:intergenic
AGTATCCGAAGTTACTCAGG+TGG 0.657827 7_4:-44404782 Msa1156160:intron
GTGTACTTCGAAGAATCCAA+TGG 0.658279 7_4:+44402017 None:intergenic
CATCGCGATCGTAATACTTG+CGG 0.660494 7_4:+44405240 None:intergenic
GAGGGCGAGACAATGATCGT+AGG 0.664594 7_4:-44400456 Msa1156160:CDS
AGGGACTGATAGTTACGAGA+GGG 0.667101 7_4:-44404911 Msa1156160:CDS
TGAGCAAGGATTGATTGATG+AGG 0.675277 7_4:-44402286 Msa1156160:CDS
TACTTCGAAGAATCCAATGG+TGG 0.684414 7_4:+44402020 None:intergenic
TTGATCGTCTTGATGACAGG+AGG 0.686646 7_4:-44400646 Msa1156160:intron
TTAATTGAAAGAGTTCGTGA+GGG 0.691313 7_4:+44405189 None:intergenic
ATGATTCAAGAAGTCGCCGG+AGG 0.695304 7_4:-44400360 Msa1156160:CDS
AGGCACCATGATAGAGACCG+TGG 0.701940 7_4:-44400418 Msa1156160:CDS
AAGGGACTGATAGTTACGAG+AGG 0.704405 7_4:-44404912 Msa1156160:CDS
ACTACAGGAAGGGGTGCTAG+CGG 0.704539 7_4:+44403855 None:intergenic
GGCGACTTCTTGAATCATAG+CGG 0.719406 7_4:+44400365 None:intergenic
GCTATGATTCAAGAAGTCGC+CGG 0.727551 7_4:-44400363 Msa1156160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAATGTAAATAAAA+AGG + chr7_4:44402844-44402863 None:intergenic 10.0%
!!! TCAAATTTTTATATTATCTA+TGG - chr7_4:44405070-44405089 Msa1156160:CDS 10.0%
!!! GATCTAATTTTCATTTTATT+TGG - chr7_4:44402579-44402598 Msa1156160:intron 15.0%
!!! TAAACAATCTGTTTTAAAAT+AGG + chr7_4:44403865-44403884 None:intergenic 15.0%
!!! AAATTAGAAATTTTAGAATG+TGG - chr7_4:44403917-44403936 Msa1156160:CDS 15.0%
!! CATTATTATATTTGTAATTG+TGG - chr7_4:44404094-44404113 Msa1156160:intron 15.0%
!!! TTTTCATTCTTTTCAGAAAA+TGG - chr7_4:44400066-44400085 Msa1156160:intron 20.0%
!!! TTCAATTGTTATTGTAGTTT+TGG - chr7_4:44400175-44400194 Msa1156160:intron 20.0%
!!! TTAACTGTTTTTTAGATATG+AGG - chr7_4:44400216-44400235 Msa1156160:intron 20.0%
!! AATTAATGCATGTTTGATAT+TGG + chr7_4:44400424-44400443 None:intergenic 20.0%
!! AAAGATGAGAGAATAATATA+GGG - chr7_4:44400622-44400641 Msa1156160:intron 20.0%
!! GTATGATATGAATGAATAAA+GGG - chr7_4:44400760-44400779 Msa1156160:intron 20.0%
!! TATGATATGAATGAATAAAG+GGG - chr7_4:44400761-44400780 Msa1156160:intron 20.0%
!! GAGTGAAATTCAATAAATAA+GGG + chr7_4:44401625-44401644 None:intergenic 20.0%
!! CCTTTATTAATTGTAGTTAT+TGG + chr7_4:44401660-44401679 None:intergenic 20.0%
!! CCAATAACTACAATTAATAA+AGG - chr7_4:44401657-44401676 Msa1156160:intron 20.0%
!!! TTGTTTAAAATAAAACTCAG+AGG - chr7_4:44402304-44402323 Msa1156160:intron 20.0%
!! ATTGTATTATTTGTATGAAC+AGG - chr7_4:44402854-44402873 Msa1156160:intron 20.0%
!! ATTCCTAGTTAGAAATTTAT+AGG - chr7_4:44403634-44403653 Msa1156160:intron 20.0%
!! TTCCTAGTTAGAAATTTATA+GGG - chr7_4:44403635-44403654 Msa1156160:intron 20.0%
!! TAATAATAAAGAAATGGTCA+CGG + chr7_4:44404880-44404899 None:intergenic 20.0%
!! AGGAAGTAATAATAAAGAAA+TGG + chr7_4:44404886-44404905 None:intergenic 20.0%
!!! TCTAATTTGTAATATTCTCT+TGG - chr7_4:44405317-44405336 Msa1156160:exon 20.0%
!!! ATGCACAATTTTGTTTTTAA+GGG + chr7_4:44405407-44405426 None:intergenic 20.0%
!!! AATGCACAATTTTGTTTTTA+AGG + chr7_4:44405408-44405427 None:intergenic 20.0%
!! TTCTTTTCAGAAAATGGATA+TGG - chr7_4:44400072-44400091 Msa1156160:intron 25.0%
!! TCTTTTCAGAAAATGGATAT+GGG - chr7_4:44400073-44400092 Msa1156160:intron 25.0%
! GATGTTATAGATAAGCTTAT+TGG - chr7_4:44400283-44400302 Msa1156160:intron 25.0%
!!! CAACTTTTCTTTGATTTCTT+TGG + chr7_4:44400513-44400532 None:intergenic 25.0%
! TTGAAAGAAGCTGATAAATT+TGG - chr7_4:44400530-44400549 Msa1156160:CDS 25.0%
! CAAAGATGAGAGAATAATAT+AGG - chr7_4:44400621-44400640 Msa1156160:intron 25.0%
! AAGATGAGAGAATAATATAG+GGG - chr7_4:44400623-44400642 Msa1156160:intron 25.0%
! GGTATGATATGAATGAATAA+AGG - chr7_4:44400759-44400778 Msa1156160:intron 25.0%
! TTTATTCCTTGCTCAAAATT+TGG - chr7_4:44400904-44400923 Msa1156160:intron 25.0%
! TTATTCCTTGCTCAAAATTT+GGG - chr7_4:44400905-44400924 Msa1156160:intron 25.0%
!!! GTTTTGTTTATTCTTTTCAC+TGG - chr7_4:44400937-44400956 Msa1156160:intron 25.0%
! GATAAATGAAAAGTTGAAGA+AGG - chr7_4:44401358-44401377 Msa1156160:intron 25.0%
! GTCTCAAAATAATTGTCATT+TGG - chr7_4:44401565-44401584 Msa1156160:intron 25.0%
!! ATAAATAAGGGTATATGAGA+GGG + chr7_4:44401613-44401632 None:intergenic 25.0%
!! AATAAATAAGGGTATATGAG+AGG + chr7_4:44401614-44401633 None:intergenic 25.0%
! GGAGTGAAATTCAATAAATA+AGG + chr7_4:44401626-44401645 None:intergenic 25.0%
! CTCAATTTAATTGTCACATT+TGG + chr7_4:44401757-44401776 None:intergenic 25.0%
! ATGTGACAATTAAATTGAGA+CGG - chr7_4:44401758-44401777 Msa1156160:intron 25.0%
! CTTCTTCTGAATAGAATTAA+TGG + chr7_4:44401905-44401924 None:intergenic 25.0%
!! ATTCTATTCAGAAGAAGTTT+TGG - chr7_4:44401908-44401927 Msa1156160:intron 25.0%
! TGAAAAGGGCAAAAAAAATT+TGG + chr7_4:44402161-44402180 None:intergenic 25.0%
! AAAACAAATGGATCTGAAAA+GGG + chr7_4:44402175-44402194 None:intergenic 25.0%
! ATTCCTTGAAACAAAACAAA+TGG + chr7_4:44402187-44402206 None:intergenic 25.0%
! AAGTCATAACTCAAATGTAT+CGG - chr7_4:44402273-44402292 Msa1156160:CDS 25.0%
! TACTAGCAATTTGAACTATT+TGG - chr7_4:44402393-44402412 Msa1156160:intron 25.0%
! TTGAACTATTTGGACTTAAT+AGG - chr7_4:44402403-44402422 Msa1156160:intron 25.0%
! TGCAGCATTAGTATTAATTA+AGG - chr7_4:44402518-44402537 Msa1156160:intron 25.0%
! TTAAAACAGTAATACTGGAT+AGG + chr7_4:44402605-44402624 None:intergenic 25.0%
!!! TCTTGAAGTTTTTTTTGCTA+GGG - chr7_4:44403456-44403475 Msa1156160:intron 25.0%
! TTCCCTATAAATTTCTAACT+AGG + chr7_4:44403640-44403659 None:intergenic 25.0%
! AAGATAACTTACTTGAAGTT+CGG + chr7_4:44403811-44403830 None:intergenic 25.0%
! AGGATAAAATTACACAAGTT+TGG + chr7_4:44403845-44403864 None:intergenic 25.0%
!!! TTTCTGGAATCATGTATAAA+AGG - chr7_4:44404030-44404049 Msa1156160:intron 25.0%
! ACATAATAACATCCTATGAT+GGG + chr7_4:44404188-44404207 None:intergenic 25.0%
! AACATAATAACATCCTATGA+TGG + chr7_4:44404189-44404208 None:intergenic 25.0%
! ACTTCAAAATAACCAACATT+TGG + chr7_4:44404289-44404308 None:intergenic 25.0%
! ATACAAACCTTTGATTCAAT+TGG - chr7_4:44404429-44404448 Msa1156160:intron 25.0%
! CTAAACGTAAAAAACATATC+TGG - chr7_4:44404555-44404574 Msa1156160:intron 25.0%
! TATCACATCCATAAGATTTA+TGG + chr7_4:44405156-44405175 None:intergenic 25.0%
! AAAATTATTTGTCCAAGACA+AGG + chr7_4:44405206-44405225 None:intergenic 25.0%
! ATTGAACAATATCTGAATGA+TGG - chr7_4:44405233-44405252 Msa1156160:CDS 25.0%
TTAGATCTTGTTCAAGTAGT+GGG + chr7_4:44399789-44399808 None:intergenic 30.0%
TTAATTGAAAGAGTTCGTGA+GGG + chr7_4:44399977-44399996 None:intergenic 30.0%
TCACGAACTCTTTCAATTAA+CGG - chr7_4:44399977-44399996 Msa1156160:three_prime_UTR 30.0%
!!! GTTATTGTAGTTTTGGATAG+TGG - chr7_4:44400182-44400201 Msa1156160:intron 30.0%
AGATGAGAGAATAATATAGG+GGG - chr7_4:44400624-44400643 Msa1156160:intron 30.0%
ATTCATTCATATCATACCCA+CGG + chr7_4:44400757-44400776 None:intergenic 30.0%
!! CAAATCAACTTGATTAGCTT+TGG - chr7_4:44400855-44400874 Msa1156160:intron 30.0%
AATTAAAAGAGCAGACAAAC+AGG - chr7_4:44401042-44401061 Msa1156160:intron 30.0%
AACTTTACTGTCTAACGAAT+TGG + chr7_4:44401133-44401152 None:intergenic 30.0%
! TCTGACTGATCACTATTTTA+CGG - chr7_4:44401158-44401177 Msa1156160:intron 30.0%
TAGATGCATTCAACAAAGAT+AGG - chr7_4:44401252-44401271 Msa1156160:intron 30.0%
AGATGCATTCAACAAAGATA+GGG - chr7_4:44401253-44401272 Msa1156160:intron 30.0%
TAGTTATTGGAGTAGTTAAG+TGG + chr7_4:44401647-44401666 None:intergenic 30.0%
! ACCAACCTAATCATTTTCTT+AGG - chr7_4:44401718-44401737 Msa1156160:intron 30.0%
TCCTAAGAAAATGATTAGGT+TGG + chr7_4:44401722-44401741 None:intergenic 30.0%
TGGTTCCTAAGAAAATGATT+AGG + chr7_4:44401726-44401745 None:intergenic 30.0%
TTTCTTCATCCAATACACAT+AGG - chr7_4:44401969-44401988 Msa1156160:intron 30.0%
GACTTAAAACCTATGTGTAT+TGG + chr7_4:44401981-44402000 None:intergenic 30.0%
!!! ATACACATAGGTTTTAAGTC+CGG - chr7_4:44401981-44402000 Msa1156160:intron 30.0%
GACATATTAAAGAACAGACA+AGG + chr7_4:44402095-44402114 None:intergenic 30.0%
ACATTTCCTAAACAAGTCAA+AGG - chr7_4:44402119-44402138 Msa1156160:intron 30.0%
!! TTTCAACCTTTGACTTGTTT+AGG + chr7_4:44402128-44402147 None:intergenic 30.0%
CAAAACAAATGGATCTGAAA+AGG + chr7_4:44402176-44402195 None:intergenic 30.0%
!!! GATCCATTTGTTTTGTTTCA+AGG - chr7_4:44402181-44402200 Msa1156160:intron 30.0%
GTTCAAAAATAGGTACTCAA+GGG + chr7_4:44402475-44402494 None:intergenic 30.0%
TGTTCAAAAATAGGTACTCA+AGG + chr7_4:44402476-44402495 None:intergenic 30.0%
!!! TTGAGTACCTATTTTTGAAC+AGG - chr7_4:44402475-44402494 Msa1156160:intron 30.0%
AATCCTTCCTGTTCAAAAAT+AGG + chr7_4:44402485-44402504 None:intergenic 30.0%
ATTAATACTAATGCTGCATG+AGG + chr7_4:44402516-44402535 None:intergenic 30.0%
AGAGGTTAAAACAGTAATAC+TGG + chr7_4:44402610-44402629 None:intergenic 30.0%
!!! AGTATTACTGTTTTAACCTC+TGG - chr7_4:44402609-44402628 Msa1156160:intron 30.0%
ATACAAGCAAATTTCATCCA+GGG - chr7_4:44402747-44402766 Msa1156160:intron 30.0%
!! ACAGAAGCTTTTCTAAAAGA+AGG + chr7_4:44402821-44402840 None:intergenic 30.0%
!!! CATTTTTGAGTGTTTATGAC+AGG - chr7_4:44403401-44403420 Msa1156160:intron 30.0%
!!! CTCTTGAAGTTTTTTTTGCT+AGG - chr7_4:44403455-44403474 Msa1156160:intron 30.0%
AGGGATTTAGTGTTAGAATT+TGG - chr7_4:44403475-44403494 Msa1156160:intron 30.0%
GGGATTTAGTGTTAGAATTT+GGG - chr7_4:44403476-44403495 Msa1156160:intron 30.0%
GGATTTAGTGTTAGAATTTG+GGG - chr7_4:44403477-44403496 Msa1156160:intron 30.0%
TAGAATGTGGAGAAATTGTT+AGG - chr7_4:44403930-44403949 Msa1156160:intron 30.0%
ATGATCAGAAGAAACGATTA+AGG + chr7_4:44403986-44404005 None:intergenic 30.0%
! GTTTCTTCTGATCATCTTTT+GGG - chr7_4:44403991-44404010 Msa1156160:intron 30.0%
!! CTATTGCTTTTATCTCTTTC+TGG - chr7_4:44404014-44404033 Msa1156160:intron 30.0%
! TGAAGTGTTTGACCATTAAT+AGG - chr7_4:44404303-44404322 Msa1156160:intron 30.0%
TTCTTCTGTTTGCCTATTAA+TGG + chr7_4:44404318-44404337 None:intergenic 30.0%
CAGAAGAATAGAAAGAAATG+AGG - chr7_4:44404330-44404349 Msa1156160:intron 30.0%
!!! TCTAAGGCTTTTATTTTCTC+TGG - chr7_4:44404464-44404483 Msa1156160:intron 30.0%
ACGTAAAAAACATATCTGGT+AGG - chr7_4:44404559-44404578 Msa1156160:intron 30.0%
ATATGCACAGATCAAAAGAA+CGG - chr7_4:44404626-44404645 Msa1156160:intron 30.0%
GATCAAATATGAGTGATACA+AGG - chr7_4:44404953-44404972 Msa1156160:intron 30.0%
TAGATCTTGTTCAAGTAGTG+GGG + chr7_4:44399788-44399807 None:intergenic 35.0%
GTTAGATCTTGTTCAAGTAG+TGG + chr7_4:44399790-44399809 None:intergenic 35.0%
ACTGAAACTCGATGAGTTTA+GGG + chr7_4:44399812-44399831 None:intergenic 35.0%
AACTGAAACTCGATGAGTTT+AGG + chr7_4:44399813-44399832 None:intergenic 35.0%
AATACTTGCGGTTAACTTCA+CGG + chr7_4:44399914-44399933 None:intergenic 35.0%
GTTAATTGAAAGAGTTCGTG+AGG + chr7_4:44399978-44399997 None:intergenic 35.0%
AGTACAGTTAGATCGTGAAA+AGG + chr7_4:44400142-44400161 None:intergenic 35.0%
TATGAGGAAGCTAAATCCAA+AGG - chr7_4:44400232-44400251 Msa1156160:intron 35.0%
ATGAGGAAGCTAAATCCAAA+GGG - chr7_4:44400233-44400252 Msa1156160:intron 35.0%
AGCTTATTGGTGAATGTGAT+AGG - chr7_4:44400296-44400315 Msa1156160:intron 35.0%
GGTGAATGTGATAGGAAAAT+TGG - chr7_4:44400304-44400323 Msa1156160:intron 35.0%
GGATACTGAAATTGCAATTG+CGG + chr7_4:44400368-44400387 None:intergenic 35.0%
TTGGACAACTCAAGTATTTC+AGG + chr7_4:44400494-44400513 None:intergenic 35.0%
!! GTCAAGTTCTGCTTACTTTT+TGG - chr7_4:44400583-44400602 Msa1156160:intron 35.0%
AGTTGAGACATGGAAGATTT+GGG + chr7_4:44400703-44400722 None:intergenic 35.0%
TGAATAAAGGGGATGATACA+TGG - chr7_4:44400772-44400791 Msa1156160:intron 35.0%
! ATGTTCCCAAATTTTGAGCA+AGG + chr7_4:44400913-44400932 None:intergenic 35.0%
TGACAGATCTTCATGTACAA+GGG + chr7_4:44401078-44401097 None:intergenic 35.0%
TTGACAGATCTTCATGTACA+AGG + chr7_4:44401079-44401098 None:intergenic 35.0%
GAAAAGAAAGACATACACCT+AGG + chr7_4:44401111-44401130 None:intergenic 35.0%
! CTGACTGATCACTATTTTAC+GGG - chr7_4:44401159-44401178 Msa1156160:intron 35.0%
!!! GACCATTATTTTGAGACGAA+GGG + chr7_4:44401526-44401545 None:intergenic 35.0%
!!! TGACCATTATTTTGAGACGA+AGG + chr7_4:44401527-44401546 None:intergenic 35.0%
!! ATTAGGTTGGTTGAGTTCAA+TGG + chr7_4:44401709-44401728 None:intergenic 35.0%
TGACAATTAAATTGAGACGG+AGG - chr7_4:44401761-44401780 Msa1156160:intron 35.0%
GACAATTAAATTGAGACGGA+GGG - chr7_4:44401762-44401781 Msa1156160:intron 35.0%
GCAGTCATCATCTACTAATA+TGG + chr7_4:44401795-44401814 None:intergenic 35.0%
GAAGAAAATGATACAGTCAG+TGG + chr7_4:44401956-44401975 None:intergenic 35.0%
! CAAAGTGTCTCTTTATGAAC+CGG + chr7_4:44402003-44402022 None:intergenic 35.0%
GTGGACTTATTGTCTTGAAT+TGG + chr7_4:44402026-44402045 None:intergenic 35.0%
TTAAAGAACAGACAAGGTTG+TGG + chr7_4:44402089-44402108 None:intergenic 35.0%
! GACTTGTTTAGGAAATGTGA+AGG + chr7_4:44402117-44402136 None:intergenic 35.0%
AAATAAAACTCAGAGGTTGC+AGG - chr7_4:44402311-44402330 Msa1156160:intron 35.0%
!!! GTACCTATTTTTGAACAGGA+AGG - chr7_4:44402479-44402498 Msa1156160:intron 35.0%
GATACAAGCAAATTTCATCC+AGG - chr7_4:44402746-44402765 Msa1156160:intron 35.0%
TAAACAGAGAGTAAAGGACA+AGG + chr7_4:44402774-44402793 None:intergenic 35.0%
AGTTGCTAAACAGAGAGTAA+AGG + chr7_4:44402780-44402799 None:intergenic 35.0%
! GAAGGCAGTTGTTAACATTT+TGG + chr7_4:44402803-44402822 None:intergenic 35.0%
GAGTTCTTTAAGCAAATGTG+TGG - chr7_4:44403252-44403271 Msa1156160:intron 35.0%
!! TGACAAGGAGGTATTACTAA+CGG + chr7_4:44403526-44403545 None:intergenic 35.0%
TAAGTTATCCCTCGTAAAAC+TGG + chr7_4:44403565-44403584 None:intergenic 35.0%
AAAAGACGCACATTCTTTAG+CGG + chr7_4:44403590-44403609 None:intergenic 35.0%
!! GATTAGCTGATCATTTTGGA+GGG - chr7_4:44403745-44403764 Msa1156160:intron 35.0%
TTTGGAGGGAAACTTCATTT+AGG - chr7_4:44403759-44403778 Msa1156160:intron 35.0%
TCACATTGCTAACAACTAAC+TGG + chr7_4:44403961-44403980 None:intergenic 35.0%
! CGTTTCTTCTGATCATCTTT+TGG - chr7_4:44403990-44404009 Msa1156160:intron 35.0%
! AATAACATCCTATGATGGGA+TGG + chr7_4:44404184-44404203 None:intergenic 35.0%
!!! GCTTTTATTTTCTCTGGTTC+AGG - chr7_4:44404470-44404489 Msa1156160:intron 35.0%
CATCAAGACGATCAATCTTA+CGG + chr7_4:44404512-44404531 None:intergenic 35.0%
! ACATTTGACCCCTTCTTTTT+GGG - chr7_4:44404907-44404926 Msa1156160:CDS 35.0%
TATAGGAGTGACAATCAAGT+AGG + chr7_4:44404996-44405015 None:intergenic 35.0%
CAAGCAAATTATACATCACG+AGG + chr7_4:44405024-44405043 None:intergenic 35.0%
TGTGATAAGATGTGTAGTCT+AGG - chr7_4:44405169-44405188 Msa1156160:intron 35.0%
ATAAGATGTGTAGTCTAGGT+GGG - chr7_4:44405173-44405192 Msa1156160:intron 35.0%
! GCTTAGGTGTTGCAAAATTA+TGG - chr7_4:44405267-44405286 Msa1156160:CDS 35.0%
!! TATGGTTTGATGTTGCTTTG+CGG - chr7_4:44405285-44405304 Msa1156160:CDS 35.0%
TTGTTCCAGATCGAAAAGCA+TGG - chr7_4:44399833-44399852 Msa1156160:three_prime_UTR 40.0%
! CGAAAAGCATGGATGCTATA+CGG - chr7_4:44399844-44399863 Msa1156160:three_prime_UTR 40.0%
AAGCAACTGGACGTTCTTAT+GGG - chr7_4:44399867-44399886 Msa1156160:three_prime_UTR 40.0%
AAAGACCGACGAGATAAAGA+CGG + chr7_4:44399953-44399972 None:intergenic 40.0%
CGTGAATAAGAGTGACAGAA+TGG + chr7_4:44400036-44400055 None:intergenic 40.0%
TGAAATTGCAATTGCGGCTT+TGG + chr7_4:44400362-44400381 None:intergenic 40.0%
TTCAGTATCCGAAGTTACTC+AGG - chr7_4:44400378-44400397 Msa1156160:CDS 40.0%
AATCACCACCTGAGTAACTT+CGG + chr7_4:44400389-44400408 None:intergenic 40.0%
TGAGAGAATAATATAGGGGG+TGG - chr7_4:44400627-44400646 Msa1156160:intron 40.0%
GAGAGAATAATATAGGGGGT+GGG - chr7_4:44400628-44400647 Msa1156160:intron 40.0%
CAGTTGAGACATGGAAGATT+TGG + chr7_4:44400704-44400723 None:intergenic 40.0%
CAAAAGCTACAGTTGAGACA+TGG + chr7_4:44400713-44400732 None:intergenic 40.0%
AAGATGAATGTGTGTTACCG+TGG - chr7_4:44400737-44400756 Msa1156160:intron 40.0%
AGATGAATGTGTGTTACCGT+GGG - chr7_4:44400738-44400757 Msa1156160:intron 40.0%
TGAAAAGTTGAAGAAGGCTG+AGG - chr7_4:44401364-44401383 Msa1156160:intron 40.0%
CTCCCTTCGTCTCAAAATAA+TGG - chr7_4:44401521-44401540 Msa1156160:intron 40.0%
TGTCACATTTGGATTGTACG+TGG + chr7_4:44401746-44401765 None:intergenic 40.0%
GAAAATGATACAGTCAGTGG+TGG + chr7_4:44401953-44401972 None:intergenic 40.0%
CATGATCCACTTTACGAATG+TGG + chr7_4:44402048-44402067 None:intergenic 40.0%
!!! ACTGTTTTAACCTCTGGAGT+TGG - chr7_4:44402615-44402634 Msa1156160:intron 40.0%
AATAAGCAAACCAACTCCAG+AGG + chr7_4:44402628-44402647 None:intergenic 40.0%
TTTGTATGAACAGGTGAGCA+AGG - chr7_4:44402863-44402882 Msa1156160:intron 40.0%
TGAGCAAGGATTGATTGATG+AGG - chr7_4:44402877-44402896 Msa1156160:intron 40.0%
!!! AATAGTTTTGATGTGTGCGC+TGG - chr7_4:44403064-44403083 Msa1156160:intron 40.0%
!!! ATAGTTTTGATGTGTGCGCT+GGG - chr7_4:44403065-44403084 Msa1156160:intron 40.0%
! TTTTATCACAGCTTCCTTCC+AGG - chr7_4:44403114-44403133 Msa1156160:intron 40.0%
TACTTCGAAGAATCCAATGG+TGG + chr7_4:44403146-44403165 None:intergenic 40.0%
GTGTACTTCGAAGAATCCAA+TGG + chr7_4:44403149-44403168 None:intergenic 40.0%
! CAAATGTGTGGATTGTGAGT+TGG - chr7_4:44403264-44403283 Msa1156160:intron 40.0%
!! GACAAGGAGGTATTACTAAC+GGG + chr7_4:44403525-44403544 None:intergenic 40.0%
!! CGTCGATTAGCTGATCATTT+TGG - chr7_4:44403741-44403760 Msa1156160:intron 40.0%
!! CGATTAGCTGATCATTTTGG+AGG - chr7_4:44403744-44403763 Msa1156160:intron 40.0%
TATGCAAATCCGTGAGAAGT+TGG - chr7_4:44403785-44403804 Msa1156160:intron 40.0%
!!! TTGCCACTTTACCCAGTTTT+TGG - chr7_4:44404208-44404227 Msa1156160:intron 40.0%
AATGTCAGTGGCCAAAAACT+GGG + chr7_4:44404222-44404241 None:intergenic 40.0%
!!! AGTTTTTGGCCACTGACATT+GGG - chr7_4:44404222-44404241 Msa1156160:intron 40.0%
AATGTTACTCCCAATGTCAG+TGG + chr7_4:44404234-44404253 None:intergenic 40.0%
GTTGTGTGAACTCCAAATGT+TGG - chr7_4:44404274-44404293 Msa1156160:intron 40.0%
! GAAATGAGGTTGACTTTGCA+TGG - chr7_4:44404344-44404363 Msa1156160:intron 40.0%
TTCTGGGCATGTGTTTAGTT+TGG - chr7_4:44404381-44404400 Msa1156160:intron 40.0%
CCTCTCTCCAATTGAATCAA+AGG + chr7_4:44404439-44404458 None:intergenic 40.0%
CCTTTGATTCAATTGGAGAG+AGG - chr7_4:44404436-44404455 Msa1156160:intron 40.0%
TTGGAGAGAGGAATGATCTA+AGG - chr7_4:44404448-44404467 Msa1156160:intron 40.0%
! AGATTGATCGTCTTGATGAC+AGG - chr7_4:44404514-44404533 Msa1156160:intron 40.0%
ACAGATCAAAAGAACGGAGT+AGG - chr7_4:44404632-44404651 Msa1156160:intron 40.0%
CAGATCAAAAGAACGGAGTA+GGG - chr7_4:44404633-44404652 Msa1156160:intron 40.0%
CTAGAGATTATGATCGTCAC+AGG - chr7_4:44404845-44404864 Msa1156160:CDS 40.0%
AAAAGAAGGGGTCAAATGTG+AGG + chr7_4:44404906-44404925 None:intergenic 40.0%
! CACATTTGACCCCTTCTTTT+TGG - chr7_4:44404906-44404925 Msa1156160:CDS 40.0%
! CATTTGACCCCTTCTTTTTG+GGG - chr7_4:44404908-44404927 Msa1156160:CDS 40.0%
AAAAAGGCCCCAAAAAGAAG+GGG + chr7_4:44404918-44404937 None:intergenic 40.0%
GAAAAAGGCCCCAAAAAGAA+GGG + chr7_4:44404919-44404938 None:intergenic 40.0%
AGAAAAAGGCCCCAAAAAGA+AGG + chr7_4:44404920-44404939 None:intergenic 40.0%
TATGAGTGATACAAGGTTCC+AGG - chr7_4:44404960-44404979 Msa1156160:intron 40.0%
TACATCACGAGGAACACTAT+AGG + chr7_4:44405013-44405032 None:intergenic 40.0%
AGCAGCTGCCATAAATCTTA+TGG - chr7_4:44405145-44405164 Msa1156160:intron 40.0%
GATAAGATGTGTAGTCTAGG+TGG - chr7_4:44405172-44405191 Msa1156160:intron 40.0%
GATGGATGTAACTTGAGCTT+AGG - chr7_4:44405251-44405270 Msa1156160:CDS 40.0%
!! ATGGTTTGATGTTGCTTTGC+GGG - chr7_4:44405286-44405305 Msa1156160:CDS 40.0%
! TCTTGTTCAAGTAGTGGGGT+GGG + chr7_4:44399784-44399803 None:intergenic 45.0%
! ATCTTGTTCAAGTAGTGGGG+TGG + chr7_4:44399785-44399804 None:intergenic 45.0%
! AGCATCCATGCTTTTCGATC+TGG + chr7_4:44399841-44399860 None:intergenic 45.0%
GAAGCAACTGGACGTTCTTA+TGG - chr7_4:44399866-44399885 Msa1156160:three_prime_UTR 45.0%
CTTATGGGAGCCAATCGTAA+CGG - chr7_4:44399882-44399901 Msa1156160:three_prime_UTR 45.0%
CATCGCGATCGTAATACTTG+CGG + chr7_4:44399926-44399945 None:intergenic 45.0%
GTTTGCCGTCTTTATCTCGT+CGG - chr7_4:44399945-44399964 Msa1156160:three_prime_UTR 45.0%
AGAATGGAGAGAGAGAGGAA+GGG + chr7_4:44400020-44400039 None:intergenic 45.0%
AATGAGTGAACCTTAGGGCA+AGG + chr7_4:44400100-44400119 None:intergenic 45.0%
GCTGCAATGAGTGAACCTTA+GGG + chr7_4:44400105-44400124 None:intergenic 45.0%
AGCTGCAATGAGTGAACCTT+AGG + chr7_4:44400106-44400125 None:intergenic 45.0%
CTCGTAACTATCAGTCCCTT+TGG + chr7_4:44400251-44400270 None:intergenic 45.0%
AAGGGACTGATAGTTACGAG+AGG - chr7_4:44400251-44400270 Msa1156160:intron 45.0%
AGGGACTGATAGTTACGAGA+GGG - chr7_4:44400252-44400271 Msa1156160:intron 45.0%
TGATAGTTACGAGAGGGAGT+TGG - chr7_4:44400258-44400277 Msa1156160:intron 45.0%
TAGAGCTCTTAAGCGTCTTG+AGG - chr7_4:44400327-44400346 Msa1156160:CDS 45.0%
AGTATCCGAAGTTACTCAGG+TGG - chr7_4:44400381-44400400 Msa1156160:CDS 45.0%
CATGCACTTGCAGATCTTGA+AGG - chr7_4:44400971-44400990 Msa1156160:intron 45.0%
TGCAGATCTTGAAGGCTTGT+CGG - chr7_4:44400979-44400998 Msa1156160:intron 45.0%
GGATATGAAGATTCGAGCTC+TGG - chr7_4:44401000-44401019 Msa1156160:intron 45.0%
TCTGTCAATGCTGTGATCCT+AGG - chr7_4:44401091-44401110 Msa1156160:intron 45.0%
ATCGGGAGTAACTACAGGAA+GGG + chr7_4:44401321-44401340 None:intergenic 45.0%
ATCTCTTGTGTTCGAGCATC+GGG + chr7_4:44401338-44401357 None:intergenic 45.0%
CATCTCTTGTGTTCGAGCAT+CGG + chr7_4:44401339-44401358 None:intergenic 45.0%
TTGAAGAAGGCTGAGGATCT+TGG - chr7_4:44401371-44401390 Msa1156160:CDS 45.0%
AGTCCACCACATTCGTAAAG+TGG - chr7_4:44402039-44402058 Msa1156160:CDS 45.0%
GATCCACTTTACGAATGTGG+TGG + chr7_4:44402045-44402064 None:intergenic 45.0%
ACAAGGTTGTGGCACATTAG+TGG + chr7_4:44402078-44402097 None:intergenic 45.0%
! TGATGAGGCACAGAAAGCAT+TGG - chr7_4:44402892-44402911 Msa1156160:intron 45.0%
! AGAGGCTGAAGCACTTAAGA+AGG - chr7_4:44402916-44402935 Msa1156160:intron 45.0%
GAGAAAATTTGCACGAGTGC+AGG + chr7_4:44403438-44403457 None:intergenic 45.0%
! CTCTTGTGCCAGTTTTACGA+GGG - chr7_4:44403554-44403573 Msa1156160:intron 45.0%
TGGCCAAAAACTGGGTAAAG+TGG + chr7_4:44404214-44404233 None:intergenic 45.0%
CAATGTCAGTGGCCAAAAAC+TGG + chr7_4:44404223-44404242 None:intergenic 45.0%
!!! CAGTTTTTGGCCACTGACAT+TGG - chr7_4:44404221-44404240 Msa1156160:intron 45.0%
! TTGATCGTCTTGATGACAGG+AGG - chr7_4:44404517-44404536 Msa1156160:intron 45.0%
ACCGTGGATATGATCGAGAT+CGG - chr7_4:44404761-44404780 Msa1156160:intron 45.0%
GCGACTTCTTGAATCATAGC+GGG + chr7_4:44404800-44404819 None:intergenic 45.0%
GGCGACTTCTTGAATCATAG+CGG + chr7_4:44404801-44404820 None:intergenic 45.0%
GCTATGATTCAAGAAGTCGC+CGG - chr7_4:44404800-44404819 Msa1156160:CDS 45.0%
!! TGTTTTCCCTGTCATCGACT+TGG - chr7_4:44405378-44405397 Msa1156160:five_prime_UTR 45.0%
GGGGTAAGTGTGGGACTATT+TGG + chr7_4:44399764-44399783 None:intergenic 50.0%
! CTTGTTCAAGTAGTGGGGTG+GGG + chr7_4:44399783-44399802 None:intergenic 50.0%
GGATGCTATACGGAAGCAAC+TGG - chr7_4:44399854-44399873 Msa1156160:three_prime_UTR 50.0%
CAGAATGGAGAGAGAGAGGA+AGG + chr7_4:44400021-44400040 None:intergenic 50.0%
GTGACAGAATGGAGAGAGAG+AGG + chr7_4:44400025-44400044 None:intergenic 50.0%
TAGTTACGAGAGGGAGTTGG+AGG - chr7_4:44400261-44400280 Msa1156160:intron 50.0%
!! TCGAGCTCTGGAGATTGTAG+AGG - chr7_4:44401012-44401031 Msa1156160:intron 50.0%
TCGGGAGTAACTACAGGAAG+GGG + chr7_4:44401320-44401339 None:intergenic 50.0%
CATCGGGAGTAACTACAGGA+AGG + chr7_4:44401322-44401341 None:intergenic 50.0%
! GATACAGTCAGTGGTGGTGA+AGG + chr7_4:44401947-44401966 None:intergenic 50.0%
AGAGTAAAGGACAAGGTCCC+TGG + chr7_4:44402767-44402786 None:intergenic 50.0%
!! GGCACAGAAAGCATTGGAAG+AGG - chr7_4:44402898-44402917 Msa1156160:intron 50.0%
AGTACACAGCTGCTGATGTG+CGG - chr7_4:44403162-44403181 Msa1156160:intron 50.0%
CTACGTGTGTGCGACATTTG+TGG - chr7_4:44403376-44403395 Msa1156160:intron 50.0%
AATACCTCCTTGTCACCAGC+AGG - chr7_4:44403531-44403550 Msa1156160:intron 50.0%
! GCTCTTGTGCCAGTTTTACG+AGG - chr7_4:44403553-44403572 Msa1156160:intron 50.0%
GAAGTTCGGCCAACTTCTCA+CGG + chr7_4:44403797-44403816 None:intergenic 50.0%
GAGACGATCCATCCCATCAT+AGG - chr7_4:44404173-44404192 Msa1156160:CDS 50.0%
CCCGATCTCGATCATATCCA+CGG + chr7_4:44404765-44404784 None:intergenic 50.0%
CCGTGGATATGATCGAGATC+GGG - chr7_4:44404762-44404781 Msa1156160:intron 50.0%
ATGATTCAAGAAGTCGCCGG+AGG - chr7_4:44404803-44404822 Msa1156160:CDS 50.0%
! GGGGCCTTTTTCTACAAGTG+CGG - chr7_4:44404927-44404946 Msa1156160:CDS 50.0%
! GGGCCTTTTTCTACAAGTGC+GGG - chr7_4:44404928-44404947 Msa1156160:CDS 50.0%
CCACCCGCACTTGTAGAAAA+AGG + chr7_4:44404934-44404953 None:intergenic 50.0%
! CCTTTTTCTACAAGTGCGGG+TGG - chr7_4:44404931-44404950 Msa1156160:CDS 50.0%
CAAGTAGGCACTACTGATCC+TGG + chr7_4:44404981-44405000 None:intergenic 50.0%
CAGCAAGACAGGTTAGTACG+AGG + chr7_4:44405099-44405118 None:intergenic 50.0%
!!! ACCTGTCTTGCTGTTTTGCC+AGG - chr7_4:44405106-44405125 Msa1156160:intron 50.0%
! GTTTTGCCAGGCGTCATGAT+CGG - chr7_4:44405118-44405137 Msa1156160:intron 50.0%
!! GTGGGTGTTGAACCTTGTCT+TGG - chr7_4:44405191-44405210 Msa1156160:CDS 50.0%
TAGTGGGGTGGGGTAAGTGT+GGG + chr7_4:44399773-44399792 None:intergenic 55.0%
TGGAGAGAGAGAGGAAGGGA+GGG + chr7_4:44400016-44400035 None:intergenic 55.0%
ATGGAGAGAGAGAGGAAGGG+AGG + chr7_4:44400017-44400036 None:intergenic 55.0%
GGATATGGGTCCTTGCCCTA+AGG - chr7_4:44400087-44400106 Msa1156160:intron 55.0%
GGGGTGGGTGATACATGACT+TGG - chr7_4:44400643-44400662 Msa1156160:intron 55.0%
! GGTGGATTTGGCAGAGGTTG+AGG + chr7_4:44401287-44401306 None:intergenic 55.0%
!! ACTACAGGAAGGGGTGCTAG+CGG + chr7_4:44401311-44401330 None:intergenic 55.0%
!! CGAGCATCGGGAGTAACTAC+AGG + chr7_4:44401326-44401345 None:intergenic 55.0%
ATCACAGCTTCCTTCCAGGC+AGG - chr7_4:44403118-44403137 Msa1156160:intron 55.0%
ACAAGAGCCTGCTGGTGACA+AGG + chr7_4:44403541-44403560 None:intergenic 55.0%
AAACTGGCACAAGAGCCTGC+TGG + chr7_4:44403549-44403568 None:intergenic 55.0%
! GGTTGACTTTGCATGGCCAC+AGG - chr7_4:44404351-44404370 Msa1156160:intron 55.0%
GACTTTGCATGGCCACAGGA+TGG - chr7_4:44404355-44404374 Msa1156160:intron 55.0%
TGGCCACAGGATGGTCTTTC+TGG - chr7_4:44404364-44404383 Msa1156160:intron 55.0%
GGCCACAGGATGGTCTTTCT+GGG - chr7_4:44404365-44404384 Msa1156160:intron 55.0%
TGCCCAGAAAGACCATCCTG+TGG + chr7_4:44404370-44404389 None:intergenic 55.0%
AACGGAGTAGGGATCGTGAC+AGG - chr7_4:44404644-44404663 Msa1156160:CDS 55.0%
ACGGAGTAGGGATCGTGACA+GGG - chr7_4:44404645-44404664 Msa1156160:CDS 55.0%
ATCGTGACAGGGAGCCTAGT+AGG - chr7_4:44404656-44404675 Msa1156160:CDS 55.0%
TCGTGACAGGGAGCCTAGTA+GGG - chr7_4:44404657-44404676 Msa1156160:CDS 55.0%
CATGGCTCTCACCACGTTCA+CGG + chr7_4:44404684-44404703 None:intergenic 55.0%
GAGGGCGAGACAATGATCGT+AGG - chr7_4:44404707-44404726 Msa1156160:intron 55.0%
GTAGGAGCAGAGATCGTGAC+AGG - chr7_4:44404725-44404744 Msa1156160:intron 55.0%
GCCTGGCAAAACAGCAAGAC+AGG + chr7_4:44405110-44405129 None:intergenic 55.0%
!! CTAGTACCGATCATGACGCC+TGG + chr7_4:44405127-44405146 None:intergenic 55.0%
GGGCAACCAAGTCGATGACA+GGG + chr7_4:44405387-44405406 None:intergenic 55.0%
AGGGCAACCAAGTCGATGAC+AGG + chr7_4:44405388-44405407 None:intergenic 55.0%
! GTAGTGGGGTGGGGTAAGTG+TGG + chr7_4:44399774-44399793 None:intergenic 60.0%
ACGGACGTCGCCGTTACGAT+TGG + chr7_4:44399895-44399914 None:intergenic 60.0%
!! AGCGGTGGTGGATTTGGCAG+AGG + chr7_4:44401293-44401312 None:intergenic 60.0%
!! GGTGCTAGCGGTGGTGGATT+TGG + chr7_4:44401299-44401318 None:intergenic 60.0%
AATGGTGGCTCCTGCCTGGA+AGG + chr7_4:44403131-44403150 None:intergenic 60.0%
TTCCAGGCAGGAGCCACCAT+TGG - chr7_4:44403130-44403149 Msa1156160:intron 60.0%
ATCCAATGGTGGCTCCTGCC+TGG + chr7_4:44403135-44403154 None:intergenic 60.0%
AGAGCCTGCTGGTGACAAGG+AGG + chr7_4:44403538-44403557 None:intergenic 60.0%
CCACGTTCACGGTCCCTACT+AGG + chr7_4:44404673-44404692 None:intergenic 60.0%
CCTAGTAGGGACCGTGAACG+TGG - chr7_4:44404670-44404689 Msa1156160:CDS 60.0%
GTGGTGAGAGCCATGAGCGA+GGG - chr7_4:44404689-44404708 Msa1156160:intron 60.0%
CATTGTCTCGCCCTCGCTCA+TGG + chr7_4:44404702-44404721 None:intergenic 60.0%
GCTCTCGAGATCGTGACCTC+CGG + chr7_4:44404822-44404841 None:intergenic 60.0%
!! ACAGGAAGGGGTGCTAGCGG+TGG + chr7_4:44401308-44401327 None:intergenic 65.0%
CGTGGTGAGAGCCATGAGCG+AGG - chr7_4:44404688-44404707 Msa1156160:intron 65.0%
!! GGAAGGGGTGCTAGCGGTGG+TGG + chr7_4:44401305-44401324 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44399754 44405431 44399754 ID=Msa1156160;Name=Msa1156160
chr7_4 mRNA 44399754 44405431 44399754 ID=Msa1156160-mRNA-1;Parent=Msa1156160;Name=Msa1156160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|0.91|0.92|1|0.91|0.84|13|285|410
chr7_4 exon 44399754 44400057 44399754 ID=Msa1156160-mRNA-1:exon:11388;Parent=Msa1156160-mRNA-1
chr7_4 exon 44400319 44400549 44400319 ID=Msa1156160-mRNA-1:exon:11387;Parent=Msa1156160-mRNA-1
chr7_4 exon 44400647 44400693 44400647 ID=Msa1156160-mRNA-1:exon:11386;Parent=Msa1156160-mRNA-1
chr7_4 exon 44401367 44401448 44401367 ID=Msa1156160-mRNA-1:exon:11385;Parent=Msa1156160-mRNA-1
chr7_4 exon 44401763 44401821 44401763 ID=Msa1156160-mRNA-1:exon:11384;Parent=Msa1156160-mRNA-1
chr7_4 exon 44401998 44402060 44401998 ID=Msa1156160-mRNA-1:exon:11383;Parent=Msa1156160-mRNA-1
chr7_4 exon 44402248 44402309 44402248 ID=Msa1156160-mRNA-1:exon:11382;Parent=Msa1156160-mRNA-1
chr7_4 exon 44403793 44403946 44403793 ID=Msa1156160-mRNA-1:exon:11381;Parent=Msa1156160-mRNA-1
chr7_4 exon 44404122 44404201 44404122 ID=Msa1156160-mRNA-1:exon:11380;Parent=Msa1156160-mRNA-1
chr7_4 exon 44404634 44404697 44404634 ID=Msa1156160-mRNA-1:exon:11379;Parent=Msa1156160-mRNA-1
chr7_4 exon 44404783 44404954 44404783 ID=Msa1156160-mRNA-1:exon:11378;Parent=Msa1156160-mRNA-1
chr7_4 exon 44405051 44405103 44405051 ID=Msa1156160-mRNA-1:exon:11377;Parent=Msa1156160-mRNA-1
chr7_4 exon 44405187 44405431 44405187 ID=Msa1156160-mRNA-1:exon:11376;Parent=Msa1156160-mRNA-1
chr7_4 five_prime_UTR 44405334 44405431 44405334 ID=Msa1156160-mRNA-1:five_prime_utr;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44405187 44405333 44405187 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44405051 44405103 44405051 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44404783 44404954 44404783 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44404634 44404697 44404634 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44404122 44404201 44404122 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44403793 44403946 44403793 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44402248 44402309 44402248 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44401998 44402060 44401998 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44401763 44401821 44401763 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44401367 44401448 44401367 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44400647 44400693 44400647 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44400319 44400549 44400319 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 CDS 44400039 44400057 44400039 ID=Msa1156160-mRNA-1:cds;Parent=Msa1156160-mRNA-1
chr7_4 three_prime_UTR 44399754 44400038 44399754 ID=Msa1156160-mRNA-1:three_prime_utr;Parent=Msa1156160-mRNA-1
Gene Sequence

>Msa1156160

ATGGATGCTATACGGAAGCAACTGGACGTTCTTATGGGAGCCAATCGTAACGGCGACGTCCGTGAAGTTAACCGCAAGTATTACGATCGCGATGTTTGCCGTCTTTATCTCGTCGGTCTTTGCCCTCACGAACTCTTTCAATTAACGAAAATGGATATGGGTCCTTGCCCTAAGGTTCACTCATTGCAGCTCAGAAAAGAATATGAGGAAGCTAAATCCAAAGGGACTGATAGTTACGAGAGGGAGTTGGAGGATGTTATAGATAAGCTTATTGGTGAATGTGATAGGAAAATTGGTAGAGCTCTTAAGCGTCTTGAGGATGATGATGCCAAAGCCGCAATTGCAATTTCAGTATCCGAAGTTACTCAGGTGACACCTGAAATACTTGAGTTGTCCAAAGAAATCAAAGAAAAGTTGAAAGAAGCTGATAAATTTGATCTTGAAGGCTTGTCGGATATGAAGATTCGAGCTCTGGAGATTGTAGAGGAGCTTCGAATTAAAAGAGCAGACAAACAGTCTACGCTTCTTTTAGATGCATTCAACAAAGATAGGGCATCTTTACCTCAACCTCTGCCAAATCCACCACCGCTAGCACCCCTTCCTGTAGTTACTCCCGATGCTCGAACACAAGAGATGATAAATGAAAAGTTGAAGAAGGCTGAGGATCTTGGTGAGCAAGGATTGATTGATGAGGCACAGAAAGCATTGGAAGAGGCTGAAGCACTTAAGAAGCTTCCTTCCAGGCAGGAGCCACCATTGGATTCTTCGAAGTACACAGCTGCTGATGTGCGGATTACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGTGATCGTCGATTAGCTGATCATTTTGGAGGGAAACTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTGGCCGAACTTCAAGAAGAAAGAAACAAGAGCCGTAAGATTGATCGTCTTGATGACAGGAGATCAAAAGAACGGAGTAGGGATCGTGACAGGGAGCCTAGTAGGGACCGTGAACGTGGTGAGAGCCATGAGCGAGGGCGAGACAATGATCGTAGGAGCAGAGATCGTGACAGGCACCATGATAGAGACCGTGGATATGATCGAGATCGGGACAGAGACTCATCCCGCTATGATTCAAGAAGTCGCCGGAGGTCACGATCTCGAGAGCGTTCTAGAGATTATGATCGTCACAGGCGTCATGATCGGTACTAG

Protein sequence

>Msa1156160

MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKSKGTDSYERELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSEVTQVTPEILELSKEIKEKLKEADKFDLEGLSDMKIRALEIVEELRIKRADKQSTLLLDAFNKDRASLPQPLPNPPPLAPLPVVTPDARTQEMINEKLKKAEDLGEQGLIDEAQKALEEAEALKKLPSRQEPPLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKIDRLDDRRSKERSRDRDREPSRDRERGESHERGRDNDRRSRDRDRHHDRDRGYDRDRDRDSSRYDSRSRRRSRSRERSRDYDRHRRHDRY*