AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146460 MtrunA17_Chr1g0155431 96.073 331 13 0 1 331 1 331 0.0 661
Msa0146460 MtrunA17_Chr1g0155431 96.238 319 12 0 335 653 13 331 0.0 639
Msa0146460 MtrunA17_Chr1g0155411 79.341 334 69 0 1 334 1 334 0.0 572
Msa0146460 MtrunA17_Chr1g0155411 78.947 323 68 0 335 657 13 335 0.0 552
Msa0146460 MtrunA17_Chr7g0245691 47.678 323 164 4 8 325 8 330 3.37e-97 301
Msa0146460 MtrunA17_Chr7g0245691 46.855 318 164 4 335 647 13 330 5.50e-93 291
Msa0146460 MtrunA17_Chr7g0245671 47.516 322 165 3 8 325 8 329 3.51e-97 301
Msa0146460 MtrunA17_Chr7g0245671 46.688 317 165 3 335 647 13 329 5.61e-93 291
Msa0146460 MtrunA17_Chr7g0245741 48.287 321 161 4 8 325 8 326 4.53e-97 301
Msa0146460 MtrunA17_Chr7g0245741 47.468 316 161 4 335 647 13 326 8.24e-93 290
Msa0146460 MtrunA17_Chr7g0245641 45.963 322 170 4 8 325 45 366 1.90e-92 291
Msa0146460 MtrunA17_Chr7g0245641 45.110 317 170 4 335 647 50 366 2.72e-88 280
Msa0146460 MtrunA17_Chr7g0245731 47.352 321 164 4 8 325 58 376 6.85e-92 290
Msa0146460 MtrunA17_Chr7g0245731 46.519 316 164 4 335 647 63 376 1.06e-87 278
Msa0146460 MtrunA17_Chr4g0048961 42.769 325 175 4 9 324 15 337 3.23e-90 284
Msa0146460 MtrunA17_Chr4g0048961 42.415 323 175 4 333 646 17 337 9.22e-88 277
Msa0146460 MtrunA17_Chr7g0245631 43.902 328 179 4 1 325 1 326 3.88e-90 283
Msa0146460 MtrunA17_Chr7g0245631 43.671 316 173 4 335 647 13 326 6.30e-86 272
Msa0146460 MtrunA17_Chr4g0010991 42.249 329 186 2 1 325 1 329 9.33e-88 277
Msa0146460 MtrunA17_Chr4g0010991 41.956 317 180 2 335 647 13 329 5.22e-83 265
Msa0146460 MtrunA17_Chr4g0042101 41.935 341 164 8 9 326 25 354 2.19e-85 272
Msa0146460 MtrunA17_Chr4g0042101 40.111 359 180 9 314 648 7 354 1.62e-82 264
Msa0146460 MtrunA17_Chr7g0245711 45.614 285 151 3 43 325 6 288 2.79e-75 243
Msa0146460 MtrunA17_Chr7g0245711 45.614 285 151 3 365 647 6 288 2.79e-75 243
Msa0146460 MtrunA17_Chr3g0077231 38.889 324 185 6 4 322 2 317 5.07e-74 241
Msa0146460 MtrunA17_Chr3g0077231 38.413 315 181 6 335 644 11 317 1.22e-69 229
Msa0146460 MtrunA17_Chr3g0077221 38.390 323 186 6 5 322 7 321 2.48e-72 236
Msa0146460 MtrunA17_Chr3g0077221 37.778 315 183 6 335 644 15 321 4.37e-68 225
Msa0146460 MtrunA17_Chr8g0364051 40.244 328 186 6 1 325 1 321 1.22e-71 234
Msa0146460 MtrunA17_Chr8g0364051 39.873 316 180 6 335 647 13 321 1.04e-66 221
Msa0146460 MtrunA17_Chr5g0423551 39.688 320 185 6 9 325 5 319 3.05e-71 233
Msa0146460 MtrunA17_Chr5g0423551 38.650 326 190 7 325 647 1 319 3.70e-68 225
Msa0146460 MtrunA17_Chr2g0331211 37.805 328 195 6 8 332 5 326 6.04e-70 230
Msa0146460 MtrunA17_Chr2g0331211 36.842 323 195 6 335 654 10 326 8.31e-66 219
Msa0146460 MtrunA17_Chr8g0363831 38.922 334 182 7 1 325 2 322 9.47e-70 229
Msa0146460 MtrunA17_Chr8g0363831 38.509 322 176 7 335 647 14 322 6.44e-65 217
Msa0146460 MtrunA17_Chr4g0039321 38.080 323 191 5 3 322 4 320 1.78e-67 224
Msa0146460 MtrunA17_Chr4g0039321 37.380 313 187 5 335 644 14 320 8.22e-63 211
Msa0146460 MtrunA17_Chr4g0039311 38.941 321 187 6 5 322 8 322 3.17e-66 220
Msa0146460 MtrunA17_Chr4g0039311 38.339 313 184 6 335 644 16 322 6.02e-62 209
Msa0146460 MtrunA17_Chr4g0001321 39.571 326 179 10 6 326 15 327 5.08e-64 215
Msa0146460 MtrunA17_Chr4g0001321 38.558 319 178 10 335 648 22 327 5.51e-59 201
Msa0146460 MtrunA17_Chr2g0333781 40.000 325 181 10 4 325 16 329 1.36e-63 214
Msa0146460 MtrunA17_Chr2g0333781 39.241 316 178 10 335 647 25 329 4.13e-58 199
Msa0146460 MtrunA17_Chr5g0431311 35.671 328 194 8 5 325 2 319 1.24e-60 205
Msa0146460 MtrunA17_Chr5g0431311 35.000 320 191 8 335 647 10 319 2.39e-56 194
Msa0146460 MtrunA17_Chr4g0002661 36.335 322 190 10 8 325 13 323 2.50e-60 205
Msa0146460 MtrunA17_Chr4g0002661 35.331 317 190 10 335 647 18 323 3.13e-56 194
Msa0146460 MtrunA17_Chr3g0106111 35.366 328 195 7 5 325 2 319 1.73e-59 202
Msa0146460 MtrunA17_Chr3g0106111 34.375 320 193 7 335 647 10 319 1.45e-54 189
Msa0146460 MtrunA17_Chr4g0002961 35.514 321 194 9 8 325 13 323 4.12e-53 185
Msa0146460 MtrunA17_Chr4g0002961 34.810 316 193 9 335 647 18 323 4.16e-49 174
Msa0146460 MtrunA17_Chr2g0281991 34.524 336 199 7 8 325 8 340 5.85e-53 185
Msa0146460 MtrunA17_Chr2g0281991 33.535 331 199 7 335 647 13 340 5.88e-49 174
Msa0146460 MtrunA17_Chr2g0282001 33.832 334 200 7 8 323 7 337 2.82e-51 181
Msa0146460 MtrunA17_Chr2g0282001 32.827 329 200 7 335 645 12 337 2.82e-47 170
Msa0146460 MtrunA17_Chr2g0291541 33.030 330 200 10 6 325 8 326 7.42e-47 168
Msa0146460 MtrunA17_Chr2g0291541 31.889 323 199 10 335 647 15 326 2.80e-42 155
Msa0146460 MtrunA17_Chr2g0282011 33.234 334 202 7 8 323 8 338 1.64e-46 168
Msa0146460 MtrunA17_Chr2g0282011 32.219 329 202 7 335 645 13 338 1.42e-42 157
Msa0146460 MtrunA17_Chr7g0275521 31.250 336 211 7 8 325 7 340 4.11e-44 161
Msa0146460 MtrunA17_Chr7g0275521 30.211 331 211 7 335 647 12 340 2.89e-40 150
Msa0146460 MtrunA17_Chr5g0411071 29.936 314 184 11 4 305 8 297 5.49e-31 123
Msa0146460 MtrunA17_Chr5g0411071 29.180 305 180 11 335 627 17 297 1.99e-27 112
Msa0146460 MtrunA17_Chr6g0450211 29.297 256 161 10 8 253 55 300 9.60e-23 100
Msa0146460 MtrunA17_Chr6g0450211 28.629 248 157 10 338 575 63 300 3.42e-20 92.8
Msa0146460 MtrunA17_Chr3g0133771 28.315 279 169 10 8 277 4 260 1.17e-17 84.7
Msa0146460 MtrunA17_Chr3g0080551 35.398 113 62 5 99 205 13 120 2.94e-13 67.0
Msa0146460 MtrunA17_Chr3g0080551 35.398 113 62 5 421 527 13 120 2.94e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146460 AT5G42800.1 69.325 326 100 0 1 326 1 326 8.21e-171 493
Msa0146460 AT5G42800.1 69.108 314 97 0 335 648 13 326 2.00e-164 476
Msa0146460 AT4G35420.1 41.896 327 182 6 1 325 1 321 6.91e-85 270
Msa0146460 AT4G35420.1 41.587 315 176 6 335 647 13 321 1.39e-80 258
Msa0146460 AT2G45400.1 43.077 325 178 3 8 325 40 364 2.15e-83 267
Msa0146460 AT2G45400.1 42.188 320 178 3 335 647 45 364 4.09e-79 256
Msa0146460 AT1G61720.1 42.342 333 175 5 5 325 10 337 1.02e-82 265
Msa0146460 AT1G61720.1 42.508 327 171 5 333 647 16 337 3.71e-80 258
Msa0146460 AT4G27250.1 38.393 336 181 9 3 317 8 338 2.55e-75 246
Msa0146460 AT4G27250.1 37.730 326 177 9 335 639 18 338 6.15e-71 234
Msa0146460 AT1G09510.1 42.073 328 181 5 1 325 1 322 1.38e-74 243
Msa0146460 AT1G09510.1 41.772 316 175 5 335 647 13 322 8.18e-70 230
Msa0146460 AT4G27250.2 38.602 329 180 8 3 317 8 328 8.84e-74 241
Msa0146460 AT4G27250.2 37.931 319 176 8 335 639 18 328 2.04e-69 230
Msa0146460 AT1G51410.1 38.700 323 189 5 6 325 7 323 2.71e-73 239
Msa0146460 AT1G51410.1 37.658 316 188 5 335 647 14 323 2.35e-68 226
Msa0146460 AT2G45400.2 43.885 278 149 3 8 278 40 317 3.09e-72 236
Msa0146460 AT2G45400.2 42.857 273 149 3 335 600 45 317 5.23e-68 225
Msa0146460 AT5G19440.1 39.692 325 183 6 5 324 7 323 6.48e-69 228
Msa0146460 AT5G19440.1 39.117 317 180 6 335 646 15 323 1.20e-64 216
Msa0146460 AT1G66800.1 39.198 324 184 8 1 319 1 316 6.98e-67 222
Msa0146460 AT1G66800.1 38.782 312 178 8 335 641 13 316 4.59e-62 209
Msa0146460 AT2G45400.3 40.345 290 168 2 41 325 18 307 7.48e-66 219
Msa0146460 AT2G45400.3 40.345 290 168 2 363 647 18 307 7.48e-66 219
Msa0146460 AT1G68540.1 38.629 321 187 7 10 325 6 321 2.08e-65 218
Msa0146460 AT1G68540.1 38.050 318 187 7 335 647 9 321 3.02e-63 213
Msa0146460 AT1G09490.1 38.279 337 181 8 1 325 1 322 1.50e-64 216
Msa0146460 AT1G09490.1 37.846 325 175 8 335 647 13 322 9.22e-60 203
Msa0146460 AT1G09480.2 38.253 332 188 8 1 325 1 322 2.05e-62 211
Msa0146460 AT1G09480.2 37.812 320 182 8 335 647 13 322 9.37e-58 198
Msa0146460 AT1G15950.3 38.769 325 185 10 4 325 9 322 4.38e-62 210
Msa0146460 AT1G15950.3 37.975 316 182 10 335 647 18 322 3.36e-57 197
Msa0146460 AT1G15950.1 38.769 325 185 10 4 325 9 322 4.38e-62 210
Msa0146460 AT1G15950.1 37.975 316 182 10 335 647 18 322 3.36e-57 197
Msa0146460 AT1G09480.1 38.253 332 188 8 1 325 48 369 6.48e-62 211
Msa0146460 AT1G09480.1 35.870 368 211 10 295 647 12 369 1.46e-58 202
Msa0146460 AT2G33590.1 36.449 321 192 8 8 325 9 320 1.16e-61 208
Msa0146460 AT2G33590.1 35.443 316 192 8 335 647 14 320 1.38e-57 197
Msa0146460 AT1G25460.1 37.654 324 184 8 10 325 6 319 6.41e-61 206
Msa0146460 AT1G25460.1 37.072 321 184 8 335 647 9 319 9.44e-59 201
Msa0146460 AT2G02400.1 36.556 331 183 11 6 325 4 318 2.01e-60 205
Msa0146460 AT2G02400.1 35.185 324 183 11 335 647 11 318 4.92e-55 191
Msa0146460 AT1G15950.2 39.103 312 177 9 4 312 9 310 3.20e-60 205
Msa0146460 AT1G15950.2 38.284 303 174 9 335 634 18 310 2.49e-55 192
Msa0146460 AT1G80820.1 38.820 322 183 10 8 326 8 318 3.53e-60 205
Msa0146460 AT1G80820.1 37.855 317 183 10 335 648 13 318 4.51e-56 194
Msa0146460 AT5G58490.1 35.168 327 195 7 6 325 7 323 1.05e-59 203
Msa0146460 AT5G58490.1 34.062 320 194 7 335 647 14 323 5.80e-55 191
Msa0146460 AT1G09500.1 36.418 335 193 8 1 325 1 325 1.13e-59 203
Msa0146460 AT1G09500.1 35.913 323 187 8 335 647 13 325 7.03e-55 190
Msa0146460 AT1G09500.3 38.328 287 160 6 1 279 1 278 2.21e-58 198
Msa0146460 AT1G09500.3 37.818 275 154 6 335 601 13 278 1.52e-53 185
Msa0146460 AT2G33600.1 35.312 320 197 7 8 325 9 320 5.34e-56 193
Msa0146460 AT2G33600.1 34.286 315 197 7 335 647 14 320 6.27e-52 182
Msa0146460 AT2G45400.4 46.759 216 108 3 8 216 40 255 1.24e-54 187
Msa0146460 AT2G45400.4 45.498 211 108 3 335 538 45 255 1.53e-50 176
Msa0146460 AT1G15950.4 39.502 281 158 8 4 282 9 279 2.53e-54 188
Msa0146460 AT1G15950.4 38.603 272 155 8 335 604 18 279 1.48e-49 175
Msa0146460 AT1G15950.6 39.928 278 155 8 4 279 9 276 2.91e-54 187
Msa0146460 AT1G15950.6 39.033 269 152 8 335 601 18 276 1.77e-49 174
Msa0146460 AT1G15950.5 39.568 278 156 8 4 279 9 276 1.65e-53 185
Msa0146460 AT1G15950.5 38.662 269 153 8 335 601 18 276 9.82e-49 172
Msa0146460 AT1G80820.2 39.416 274 154 8 8 279 8 271 8.85e-52 180
Msa0146460 AT1G80820.2 38.290 269 154 8 335 601 13 271 8.83e-48 169
Msa0146460 AT1G76470.1 33.028 327 213 6 3 327 2 324 7.07e-51 179
Msa0146460 AT1G76470.1 32.492 317 208 6 335 649 12 324 1.13e-46 168
Msa0146460 AT1G09490.2 35.570 298 165 8 40 325 9 291 1.48e-46 167
Msa0146460 AT1G09490.2 35.570 298 165 8 362 647 9 291 1.48e-46 167
Msa0146460 AT1G09500.2 34.007 297 176 8 39 325 5 291 6.14e-43 157
Msa0146460 AT1G09500.2 34.007 297 176 8 361 647 5 291 6.14e-43 157
Msa0146460 AT1G68540.2 35.616 219 132 6 111 325 1 214 1.65e-33 128
Msa0146460 AT1G68540.2 35.616 219 132 6 433 647 1 214 1.65e-33 128
Msa0146460 AT1G15950.7 34.783 230 141 7 99 325 1 224 6.64e-33 127
Msa0146460 AT1G15950.7 34.783 230 141 7 421 647 1 224 6.64e-33 127
Msa0146460 AT4G30470.1 27.740 292 177 12 4 282 6 276 3.53e-27 112
Msa0146460 AT4G30470.1 27.719 285 172 12 333 604 13 276 9.55e-26 108
Msa0146460 AT2G23910.3 26.667 285 188 11 4 281 6 276 1.93e-26 109
Msa0146460 AT2G23910.3 26.259 278 184 11 333 603 13 276 9.43e-25 105
Msa0146460 AT2G23910.2 26.855 283 186 11 4 279 6 274 2.84e-26 109
Msa0146460 AT2G23910.2 26.449 276 182 11 333 601 13 274 1.39e-24 104
Msa0146460 AT2G23910.1 26.471 306 202 12 4 300 6 297 4.14e-26 109
Msa0146460 AT2G23910.1 26.087 299 198 12 333 622 13 297 1.98e-24 104
Msa0146460 AT4G33360.2 28.623 276 172 8 8 277 15 271 3.31e-21 95.1
Msa0146460 AT4G33360.2 28.044 271 170 8 335 599 20 271 5.06e-19 89.0
Msa0146460 AT5G14700.1 29.771 262 157 10 8 253 55 305 4.71e-21 95.9
Msa0146460 AT5G14700.1 28.740 254 154 10 338 575 63 305 9.58e-18 85.9
Msa0146460 AT4G33360.3 28.623 276 172 8 8 277 3 259 5.59e-21 95.1
Msa0146460 AT4G33360.3 28.044 271 170 8 335 599 8 259 7.69e-19 88.6
Msa0146460 AT4G33360.1 28.623 276 172 8 8 277 15 271 7.08e-21 95.1
Msa0146460 AT4G33360.1 28.044 271 170 8 335 599 20 271 1.02e-18 88.6
Msa0146460 AT5G14700.2 31.000 200 122 6 8 196 55 249 3.42e-18 85.9
Msa0146460 AT5G14700.2 29.688 192 119 6 338 518 63 249 8.30e-15 75.9
Msa0146460 AT2G23910.4 25.385 260 171 12 50 300 18 263 3.33e-17 82.8
Msa0146460 AT2G23910.4 25.385 260 171 12 372 622 18 263 3.33e-17 82.8

Find 192 sgRNAs with CRISPR-Local

Find 725 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATCTTCAGTAACGTTT+AGG 0.241553 1_4:+6101949 None:intergenic
TTTGATCTTCAGTAACGTTT+AGG 0.241553 1_4:+6108436 None:intergenic
ATTGATACATGCAGAGAAAA+AGG 0.247887 1_4:-6100954 Msa0146460:CDS
ATTGATACATGCAGAGAAAA+AGG 0.247887 1_4:-6107441 Msa0146460:CDS
AAAACAGAGAAAATAAAATA+TGG 0.250230 1_4:-6111032 Msa0146460:exon
ATTGGTGCTTTAACAAATTC+AGG 0.252064 1_4:+6100924 None:intergenic
ATTGGTGCTTTAACAAATTC+AGG 0.252064 1_4:+6107411 None:intergenic
CGGTCAATTCCAACATATAT+AGG 0.266931 1_4:-6100576 Msa0146460:three_prime_UTR
TTCAGTAACGTTTAGGGTTC+CGG 0.269534 1_4:+6101956 None:intergenic
TTCAGTAACGTTTAGGGTTC+CGG 0.269534 1_4:+6108443 None:intergenic
ATGATCAAGCCTACCATAAA+AGG 0.270848 1_4:-6102047 Msa0146460:CDS
ATGATCAAGCCTACCATAAA+AGG 0.270848 1_4:-6108534 Msa0146460:CDS
CATATTCTTGTTTGAGCATA+TGG 0.271150 1_4:-6101285 Msa0146460:CDS
CATATTCTTGTTTGAGCATA+TGG 0.271150 1_4:-6107772 Msa0146460:CDS
TACTCATGTGATGTAGGAAT+TGG 0.314786 1_4:+6100704 None:intergenic
TGTTTGCGTCACAGGGGCTT+CGG 0.316160 1_4:-6104481 Msa0146460:intron
TGTTTGCGTCACAGGGGCTT+CGG 0.316160 1_4:-6110993 Msa0146460:CDS
GATCATCCAAGTGGACAAAT+TGG 0.337508 1_4:+6101321 None:intergenic
GATCATCCAAGTGGACAAAT+TGG 0.337508 1_4:+6107808 None:intergenic
TTGATCTTCAGTAACGTTTA+GGG 0.340589 1_4:+6101950 None:intergenic
TTGATCTTCAGTAACGTTTA+GGG 0.340589 1_4:+6108437 None:intergenic
TTTGAGCATATGGAAGTAGA+AGG 0.341082 1_4:-6101275 Msa0146460:CDS
TTTGAGCATATGGAAGTAGA+AGG 0.341082 1_4:-6107762 Msa0146460:CDS
GAAGTCCATCTTGTGCTCTT+TGG 0.342018 1_4:+6101666 None:intergenic
GAAGTCCATCTTGTGCTCTT+TGG 0.342018 1_4:+6108153 None:intergenic
TGTGTGACACCATTACTTAT+TGG 0.352169 1_4:+6100906 None:intergenic
AATCAATCTACGGACAGTTT+TGG 0.354166 1_4:+6101992 None:intergenic
AATCAATCTACGGACAGTTT+TGG 0.354166 1_4:+6108479 None:intergenic
CAAGAATATTCCAGATCAAT+TGG 0.355555 1_4:-6101060 Msa0146460:CDS
CAAGAATATTCCAGATCAAT+TGG 0.355555 1_4:-6107547 Msa0146460:CDS
CAAAGTGCTAGAATAAATTA+AGG 0.356605 1_4:+6100768 None:intergenic
TTTGCAAGTGGGACTGCATT+TGG 0.362660 1_4:+6100734 None:intergenic
GTTTGCGTCACAGGGGCTTC+GGG 0.370303 1_4:-6104480 Msa0146460:intron
GTTTGCGTCACAGGGGCTTC+GGG 0.370303 1_4:-6110992 Msa0146460:CDS
CTTCGGGTTTCATCGGGTCA+TGG 0.381174 1_4:-6104464 Msa0146460:CDS
CTTCGGGTTTCATCGGGTCA+TGG 0.381174 1_4:-6110976 Msa0146460:CDS
GCCGAAACTGTTTGCGTCAC+AGG 0.383589 1_4:-6111001 Msa0146460:CDS
TTGATTTCAGCTGCTTCAAT+AGG 0.387645 1_4:-6100552 Msa0146460:three_prime_UTR
CCCTGTGACGCAAACAGTTT+CGG 0.388115 1_4:+6111000 None:intergenic
TGTGTGTCTGTGATGGCTTT+AGG 0.388446 1_4:-6100852 Msa0146460:three_prime_UTR
CTCACAAGCTCCAATTGATC+TGG 0.389786 1_4:+6101050 None:intergenic
CTCACAAGCTCCAATTGATC+TGG 0.389786 1_4:+6107537 None:intergenic
ACAGGGGCTTCGGGTTTCAT+CGG 0.391119 1_4:-6104471 Msa0146460:intron
ACAGGGGCTTCGGGTTTCAT+CGG 0.391119 1_4:-6110983 Msa0146460:CDS
TCACTAGAGAAAATAAAATC+AGG 0.400877 1_4:-6111058 Msa0146460:five_prime_UTR
AAACATCAAAACTAACGGTT+TGG 0.402027 1_4:+6100612 None:intergenic
ATCATCCCACCTCTTGTTGT+TGG 0.405200 1_4:-6101637 Msa0146460:CDS
ATCATCCCACCTCTTGTTGT+TGG 0.405200 1_4:-6108124 Msa0146460:CDS
TCACACATAAATAAATATAT+AGG 0.407180 1_4:-6100890 Msa0146460:exon
TTTGTGGGGATATTGTACTC+TGG 0.409401 1_4:+6101185 None:intergenic
TTTGTGGGGATATTGTACTC+TGG 0.409401 1_4:+6107672 None:intergenic
TTTATAAATGTACCAGTGAT+AGG 0.410676 1_4:+6101565 None:intergenic
TTTATAAATGTACCAGTGAT+AGG 0.410676 1_4:+6108052 None:intergenic
CAAAGAGCAAACTGTCCATT+TGG 0.411352 1_4:-6104149 Msa0146460:CDS
CAAAGAGCAAACTGTCCATT+TGG 0.411352 1_4:-6110660 Msa0146460:CDS
CAGGGGCTTCGGGTTTCATC+GGG 0.419287 1_4:-6104470 Msa0146460:CDS
CAGGGGCTTCGGGTTTCATC+GGG 0.419287 1_4:-6110982 Msa0146460:CDS
GCATTAAGTACTTACTTTGT+GGG 0.426047 1_4:+6101170 None:intergenic
GCATTAAGTACTTACTTTGT+GGG 0.426047 1_4:+6107657 None:intergenic
TTGTGGGGATATTGTACTCT+GGG 0.449070 1_4:+6101186 None:intergenic
TTGTGGGGATATTGTACTCT+GGG 0.449070 1_4:+6107673 None:intergenic
GAAGCAATTAAAGGGTGTAC+TGG 0.456664 1_4:-6104093 Msa0146460:CDS
GAAGCAATTAAAGGGTGTAC+TGG 0.456664 1_4:-6110604 Msa0146460:CDS
TATGGGTACCTCAGGGTCCT+TGG 0.456797 1_4:+6104035 None:intergenic
TATGGGTACCTCAGGGTCCT+TGG 0.456797 1_4:+6110546 None:intergenic
CTTTATGTGTGTGTCTGTGA+TGG 0.466271 1_4:-6100859 Msa0146460:three_prime_UTR
TTCTCTTACTCATGTGATGT+AGG 0.473991 1_4:+6100698 None:intergenic
GACAGTTTGCTCTTTGCACC+TGG 0.475948 1_4:+6104156 None:intergenic
GACAGTTTGCTCTTTGCACC+TGG 0.475948 1_4:+6110667 None:intergenic
GCAAGGCCAATTTGTCCACT+TGG 0.475951 1_4:-6101327 Msa0146460:CDS
GCAAGGCCAATTTGTCCACT+TGG 0.475951 1_4:-6107814 Msa0146460:CDS
TAGGAGAAAGGGCAGTGATT+AGG 0.477149 1_4:+6101584 None:intergenic
TAGGAGAAAGGGCAGTGATT+AGG 0.477149 1_4:+6108071 None:intergenic
ATCAAAGAAGATCAAAGACT+TGG 0.477770 1_4:-6101021 Msa0146460:CDS
ATCAAAGAAGATCAAAGACT+TGG 0.477770 1_4:-6107508 Msa0146460:CDS
ACTCATGTGATGTAGGAATT+GGG 0.481036 1_4:+6100705 None:intergenic
GGCATAGTTGGAATAAGAAA+AGG 0.483517 1_4:+6101613 None:intergenic
GGCATAGTTGGAATAAGAAA+AGG 0.483517 1_4:+6108100 None:intergenic
GCACAAATTTGCAGGAAATG+AGG 0.483996 1_4:-6101369 Msa0146460:intron
GCACAAATTTGCAGGAAATG+AGG 0.483996 1_4:-6107856 Msa0146460:intron
ATTAGGCTAGGTGGCATAGT+TGG 0.487275 1_4:+6101601 None:intergenic
ATTAGGCTAGGTGGCATAGT+TGG 0.487275 1_4:+6108088 None:intergenic
AAACAGAGAAAATAAAATAT+GGG 0.491026 1_4:-6111031 Msa0146460:exon
GAAATCAAACCTATATATGT+TGG 0.492245 1_4:+6100567 None:intergenic
TTGAGCATATGGAAGTAGAA+GGG 0.498318 1_4:-6101274 Msa0146460:CDS
TTGAGCATATGGAAGTAGAA+GGG 0.498318 1_4:-6107761 Msa0146460:CDS
TAACGGTTTGGATGGTTGAA+AGG 0.498483 1_4:+6100624 None:intergenic
AGTCCTTTGTTAGAACTGCC+AGG 0.502761 1_4:-6104174 Msa0146460:CDS
AGTCCTTTGTTAGAACTGCC+AGG 0.502761 1_4:-6110685 Msa0146460:CDS
ACTCATGGAGCGCGGTTACA+TGG 0.507446 1_4:-6104430 Msa0146460:CDS
ACTCATGGAGCGCGGTTACA+TGG 0.507446 1_4:-6110942 Msa0146460:CDS
ATTTGAATTCAAATACAGCT+TGG 0.508167 1_4:-6100997 Msa0146460:CDS
ATTTGAATTCAAATACAGCT+TGG 0.508167 1_4:-6107484 Msa0146460:CDS
ATGTACCAGTGATAGGAGAA+AGG 0.508607 1_4:+6101572 None:intergenic
ATGTACCAGTGATAGGAGAA+AGG 0.508607 1_4:+6108059 None:intergenic
GAATGCAGAAAACTTGAAGA+AGG 0.510219 1_4:-6104199 Msa0146460:intron
GAATGCAGAAAACTTGAAGA+AGG 0.510219 1_4:-6110710 Msa0146460:intron
ATCAAAACTAACGGTTTGGA+TGG 0.510479 1_4:+6100616 None:intergenic
TGTACCAGTGATAGGAGAAA+GGG 0.510873 1_4:+6101573 None:intergenic
TGTACCAGTGATAGGAGAAA+GGG 0.510873 1_4:+6108060 None:intergenic
CCGAAACTGTTTGCGTCACA+GGG 0.511201 1_4:-6111000 Msa0146460:CDS
TTGATTTACACATCGTCCGC+CGG 0.512560 1_4:-6101975 Msa0146460:CDS
TTGATTTACACATCGTCCGC+CGG 0.512560 1_4:-6108462 Msa0146460:CDS
GTTAAAGCACCAATAAGTAA+TGG 0.513064 1_4:-6100915 Msa0146460:CDS
CTATATATGTTGGAATTGAC+CGG 0.514045 1_4:+6100577 None:intergenic
ACCAAGGTCAGCCTTCCAAA+TGG 0.516767 1_4:+6104134 None:intergenic
ACCAAGGTCAGCCTTCCAAA+TGG 0.516767 1_4:+6110645 None:intergenic
TGAAGATCAAAAGCCCTTGT+GGG 0.521869 1_4:-6101937 Msa0146460:CDS
TGAAGATCAAAAGCCCTTGT+GGG 0.521869 1_4:-6108424 Msa0146460:CDS
TCCATTTGGAAGGCTGACCT+TGG 0.530988 1_4:-6104135 Msa0146460:CDS
TCCATTTGGAAGGCTGACCT+TGG 0.530988 1_4:-6110646 Msa0146460:CDS
AAGGCTGACCTTGGTGAAGA+AGG 0.534105 1_4:-6104126 Msa0146460:CDS
AAGGCTGACCTTGGTGAAGA+AGG 0.534105 1_4:-6110637 Msa0146460:CDS
TGAATTCAAATACAGCTTGG+AGG 0.534333 1_4:-6100994 Msa0146460:CDS
TGAATTCAAATACAGCTTGG+AGG 0.534333 1_4:-6107481 Msa0146460:CDS
CTGAAGATCAAAAGCCCTTG+TGG 0.543581 1_4:-6101938 Msa0146460:CDS
CTGAAGATCAAAAGCCCTTG+TGG 0.543581 1_4:-6108425 Msa0146460:CDS
GACGCAAACAGTTTCGGCCG+TGG 0.543841 1_4:+6111006 None:intergenic
TCAAAACTAAATCGAATCCA+CGG 0.546481 1_4:+6100523 None:intergenic
AATAAAAGGGACCTGGGTCG+CGG 0.549676 1_4:+6110906 None:intergenic
ATGGCTTGTCATGAGACTCA+TGG 0.550625 1_4:-6104445 Msa0146460:CDS
ATGGCTTGTCATGAGACTCA+TGG 0.550625 1_4:-6110957 Msa0146460:CDS
GGAGAGTGAAGATGACTGGC+TGG 0.556468 1_4:-6101881 Msa0146460:CDS
GGAGAGTGAAGATGACTGGC+TGG 0.556468 1_4:-6108368 Msa0146460:CDS
CATTAAGTACTTACTTTGTG+GGG 0.557405 1_4:+6101171 None:intergenic
CATTAAGTACTTACTTTGTG+GGG 0.557405 1_4:+6107658 None:intergenic
AAAATAAAATATGGGTTCCA+CGG 0.557466 1_4:-6111023 Msa0146460:exon
CGAGCAACAGTCCGCGACCC+AGG 0.559232 1_4:-6104405 Msa0146460:intron
CGAGCAACAGTCCGCGACCC+AGG 0.559232 1_4:-6110917 Msa0146460:intron
CACTTGCGGAGCAAGAAGCA+TGG 0.562977 1_4:-6101696 Msa0146460:CDS
CACTTGCGGAGCAAGAAGCA+TGG 0.562977 1_4:-6108183 Msa0146460:CDS
TGCAGGAGAGTGAAGATGAC+TGG 0.565963 1_4:-6101885 Msa0146460:CDS
TGCAGGAGAGTGAAGATGAC+TGG 0.565963 1_4:-6108372 Msa0146460:CDS
TCAAAGAAGATCAAAGACTT+GGG 0.567744 1_4:-6101020 Msa0146460:CDS
TCAAAGAAGATCAAAGACTT+GGG 0.567744 1_4:-6107507 Msa0146460:CDS
ATTACTGAGGCGGTTGCACT+AGG 0.570313 1_4:+6100814 None:intergenic
GAAAGGGCAGTGATTAGGCT+AGG 0.570840 1_4:+6101589 None:intergenic
GAAAGGGCAGTGATTAGGCT+AGG 0.570840 1_4:+6108076 None:intergenic
AAAGGACCAACAACAAGAGG+TGG 0.582880 1_4:+6101631 None:intergenic
AAAGGACCAACAACAAGAGG+TGG 0.582880 1_4:+6108118 None:intergenic
GAATAAATTAAGGACATGGA+TGG 0.583007 1_4:+6100778 None:intergenic
ACTGCCCTTTCTCCTATCAC+TGG 0.583168 1_4:-6101577 Msa0146460:intron
ACTGCCCTTTCTCCTATCAC+TGG 0.583168 1_4:-6108064 Msa0146460:intron
GAGCAAACTGTCCATTTGGA+AGG 0.583763 1_4:-6104145 Msa0146460:CDS
GAGCAAACTGTCCATTTGGA+AGG 0.583763 1_4:-6110656 Msa0146460:CDS
GCTTTAGGATCTTAATTCAG+TGG 0.584984 1_4:-6100837 Msa0146460:three_prime_UTR
CACTAGAGAAAATAAAATCA+GGG 0.590615 1_4:-6111057 Msa0146460:five_prime_UTR
CAAAACTAAATCGAATCCAC+GGG 0.591074 1_4:+6100524 None:intergenic
AGACAAAACATCAAAACTAA+CGG 0.603852 1_4:+6100607 None:intergenic
ATTGGGTCTATATTTGCAAG+TGG 0.605060 1_4:+6100722 None:intergenic
ATTTGCCAAAGAGCACAAGA+TGG 0.605063 1_4:-6101671 Msa0146460:CDS
ATTTGCCAAAGAGCACAAGA+TGG 0.605063 1_4:-6108158 Msa0146460:CDS
AGAAAAGGACCAACAACAAG+AGG 0.606682 1_4:+6101628 None:intergenic
AGAAAAGGACCAACAACAAG+AGG 0.606682 1_4:+6108115 None:intergenic
ACGATGTGTAAATCAATCTA+CGG 0.609135 1_4:+6101982 None:intergenic
ACGATGTGTAAATCAATCTA+CGG 0.609135 1_4:+6108469 None:intergenic
CATTATTCGATTATAAAGCA+AGG 0.613434 1_4:-6101344 Msa0146460:CDS
CATTATTCGATTATAAAGCA+AGG 0.613434 1_4:-6107831 Msa0146460:CDS
GAGAGTGAAGATGACTGGCT+GGG 0.614181 1_4:-6101880 Msa0146460:intron
GAGAGTGAAGATGACTGGCT+GGG 0.614181 1_4:-6108367 Msa0146460:intron
TTGGGTCTATATTTGCAAGT+GGG 0.615110 1_4:+6100723 None:intergenic
GCTAGAATAAATTAAGGACA+TGG 0.616340 1_4:+6100774 None:intergenic
AGCATATGGAAGTAGAAGGG+AGG 0.617663 1_4:-6101271 Msa0146460:CDS
AGCATATGGAAGTAGAAGGG+AGG 0.617663 1_4:-6107758 Msa0146460:CDS
CCAACAGCTCTCATCCCACA+AGG 0.627961 1_4:+6101923 None:intergenic
CCAACAGCTCTCATCCCACA+AGG 0.627961 1_4:+6108410 None:intergenic
CATCATGAAAGCATGCCTCA+AGG 0.630278 1_4:-6102015 Msa0146460:CDS
CATCATGAAAGCATGCCTCA+AGG 0.630278 1_4:-6108502 Msa0146460:CDS
TCCTTGGACTCAAAATCCAT+AGG 0.646498 1_4:+6104051 None:intergenic
TCCTTGGACTCAAAATCCAT+AGG 0.646498 1_4:+6110562 None:intergenic
GCTTCAATAGGTTGAACCCG+TGG 0.651211 1_4:-6100540 Msa0146460:three_prime_UTR
CCTTGTGGGATGAGAGCTGT+TGG 0.652347 1_4:-6101923 Msa0146460:CDS
CCTTGTGGGATGAGAGCTGT+TGG 0.652347 1_4:-6108410 Msa0146460:CDS
AAGGACCAACAACAAGAGGT+GGG 0.653580 1_4:+6101632 None:intergenic
AAGGACCAACAACAAGAGGT+GGG 0.653580 1_4:+6108119 None:intergenic
GCACCTGGCAGTTCTAACAA+AGG 0.664303 1_4:+6104171 None:intergenic
GCACCTGGCAGTTCTAACAA+AGG 0.664303 1_4:+6110682 None:intergenic
AGAAATACGTATTACTGAGG+CGG 0.681855 1_4:+6100804 None:intergenic
AGGGCAGTGATTAGGCTAGG+TGG 0.683144 1_4:+6101592 None:intergenic
AGGGCAGTGATTAGGCTAGG+TGG 0.683144 1_4:+6108079 None:intergenic
CTTCACAAAGATCATCCAAG+TGG 0.692415 1_4:+6101312 None:intergenic
CTTCACAAAGATCATCCAAG+TGG 0.692415 1_4:+6107799 None:intergenic
CAACAGCTCTCATCCCACAA+GGG 0.696587 1_4:+6101924 None:intergenic
CAACAGCTCTCATCCCACAA+GGG 0.696587 1_4:+6108411 None:intergenic
GTCATGAGACTCATGGAGCG+CGG 0.701087 1_4:-6104438 Msa0146460:CDS
GTCATGAGACTCATGGAGCG+CGG 0.701087 1_4:-6110950 Msa0146460:CDS
CAAAACTACCTTCTTCACCA+AGG 0.706268 1_4:+6104118 None:intergenic
CAAAACTACCTTCTTCACCA+AGG 0.706268 1_4:+6110629 None:intergenic
AGTAACGTTTAGGGTTCCGG+CGG 0.708151 1_4:+6101959 None:intergenic
AGTAACGTTTAGGGTTCCGG+CGG 0.708151 1_4:+6108446 None:intergenic
CGAAACTGTTTGCGTCACAG+GGG 0.710846 1_4:-6110999 Msa0146460:CDS
ACGAGAAATACGTATTACTG+AGG 0.731334 1_4:+6100801 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATTAAAAAAATTGT+TGG + chr1_4:6100701-6100720 None:intergenic 10.0%
!! ATATATATATATTGGATTAA+TGG + chr1_4:6101261-6101280 None:intergenic 10.0%
!! AATCCAATATATATATATAA+TGG - chr1_4:6101263-6101282 Msa0146460:CDS 10.0%
!! ATACCATTATATATATATAT+TGG + chr1_4:6101269-6101288 None:intergenic 10.0%
!!! ATAAAAGTGAATTAAAATTT+TGG - chr1_4:6102129-6102148 Msa0146460:intron 10.0%
!!! ATAAAAGTGAATTAAAATTT+TGG - chr1_4:6102129-6102148 Msa0146460:intron 10.0%
!!! ATAAAAGTGAATTAAAATTT+TGG - chr1_4:6102129-6102148 Msa0146460:intron 10.0%
!!! TTTTTATAAACTTTAGTATA+TGG + chr1_4:6102514-6102533 None:intergenic 10.0%
!!! AATCTAATCATTTTTTTTTT+TGG - chr1_4:6102620-6102639 Msa0146460:intron 10.0%
!! TATAATAAAAAATCAGTAAA+AGG + chr1_4:6102720-6102739 None:intergenic 10.0%
!! TTAAATTATAAAACTCTTAT+AGG + chr1_4:6103238-6103257 None:intergenic 10.0%
!!! TAATTTAATTTAAAGTGATT+AGG + chr1_4:6103267-6103286 None:intergenic 10.0%
!! ATAGTGAATAAAAAAAAATA+AGG - chr1_4:6105750-6105769 Msa0146460:intron 10.0%
!! TAGTGAATAAAAAAAAATAA+GGG - chr1_4:6105751-6105770 Msa0146460:intron 10.0%
!! TAAAAAAAACTCATTAAAAT+AGG - chr1_4:6106626-6106645 Msa0146460:intron 10.0%
!!! TTTTAATCTAAAAACAATTT+TGG - chr1_4:6106734-6106753 Msa0146460:intron 10.0%
!!! ATTTTGATTAAAAAAATTGT+TGG + chr1_4:6100701-6100720 None:intergenic 10.0%
!!! TTTTAATACCATTATATATT+TGG + chr1_4:6107762-6107781 None:intergenic 10.0%
!!! ATAAAAGTGAATTAAAATTT+TGG - chr1_4:6102129-6102148 Msa0146460:intron 10.0%
!!! ATAAAAGTGAATTAAAATTT+TGG - chr1_4:6102129-6102148 Msa0146460:intron 10.0%
!!! ATAAAAGTGAATTAAAATTT+TGG - chr1_4:6102129-6102148 Msa0146460:intron 10.0%
!!! TTTTTATAAACTTTAGTATA+TGG + chr1_4:6102514-6102533 None:intergenic 10.0%
!!! AATCTAATCATTTTTTTTTT+TGG - chr1_4:6102620-6102639 Msa0146460:intron 10.0%
!! TTAAATTATAAAACTCTTAT+AGG + chr1_4:6103238-6103257 None:intergenic 10.0%
!!! TAATTTAATTTAAAGTGATT+AGG + chr1_4:6103267-6103286 None:intergenic 10.0%
!!! AAAATGATTTTAATAAAGTT+TGG - chr1_4:6111079-6111098 Msa0146460:five_prime_UTR 10.0%
!! AAAACAGAGAAAATAAAATA+TGG - chr1_4:6100497-6100516 Msa0146460:three_prime_UTR 15.0%
!! AAACAGAGAAAATAAAATAT+GGG - chr1_4:6100498-6100517 Msa0146460:three_prime_UTR 15.0%
!! TGCATATAAAATTAAAGTAT+GGG + chr1_4:6101003-6101022 None:intergenic 15.0%
!! ATGCATATAAAATTAAAGTA+TGG + chr1_4:6101004-6101023 None:intergenic 15.0%
!!! ATAGATATCTAAGTTTTTTT+TGG - chr1_4:6101811-6101830 Msa0146460:intron 15.0%
!!! TAGATATCTAAGTTTTTTTT+GGG - chr1_4:6101812-6101831 Msa0146460:intron 15.0%
!!! TAAGGAATTTAAAATAGAAA+TGG + chr1_4:6101952-6101971 None:intergenic 15.0%
!! AAAACTATAACTGAAAATTA+TGG + chr1_4:6102061-6102080 None:intergenic 15.0%
!!! AATTAAAATTTTGGTGATAA+TGG - chr1_4:6102138-6102157 Msa0146460:intron 15.0%
!!! AATTAAAATTTTGGTGATAA+TGG - chr1_4:6102138-6102157 Msa0146460:intron 15.0%
!!! AATTAAAATTTTGGTGATAA+TGG - chr1_4:6102138-6102157 Msa0146460:intron 15.0%
!!! TATAGTTTGATTTGTAATTT+TGG + chr1_4:6102553-6102572 None:intergenic 15.0%
!! AAAAAAATGATTAGATTGTT+AGG + chr1_4:6102617-6102636 None:intergenic 15.0%
!!! ATTGTTTAAATTGGATTTTT+AGG - chr1_4:6103957-6103976 Msa0146460:intron 15.0%
!! TCACACATAAATAAATATAT+AGG - chr1_4:6104152-6104171 Msa0146460:CDS 15.0%
!! TTAACGTAAGATTAAAATAT+AGG + chr1_4:6104413-6104432 None:intergenic 15.0%
!! ATATTTCAAATACTAATTGA+AGG + chr1_4:6104654-6104673 None:intergenic 15.0%
!!! TTTGAAATATGAATTAAGAA+CGG - chr1_4:6104664-6104683 Msa0146460:intron 15.0%
!!! TGAATTTGGTTTTTTTTTTT+AGG - chr1_4:6105524-6105543 Msa0146460:intron 15.0%
!!! GAATTTGGTTTTTTTTTTTA+GGG - chr1_4:6105525-6105544 Msa0146460:intron 15.0%
!!! TTAGGTTGAATTTTTTTTTA+GGG + chr1_4:6105835-6105854 None:intergenic 15.0%
!!! ATTAGGTTGAATTTTTTTTT+AGG + chr1_4:6105836-6105855 None:intergenic 15.0%
!! AAGAAAGAAAAAAAAAAACT+AGG - chr1_4:6106050-6106069 Msa0146460:intron 15.0%
!!! CTTATTTTAATATGGTAATT+AGG + chr1_4:6106129-6106148 None:intergenic 15.0%
!! CTAATTACCATATTAAAATA+AGG - chr1_4:6106127-6106146 Msa0146460:intron 15.0%
!!! AAGTTATATTTATTGATTTC+CGG - chr1_4:6106267-6106286 Msa0146460:intron 15.0%
!!! ATTTTCATCTTTATATTTCA+AGG - chr1_4:6106517-6106536 Msa0146460:intron 15.0%
!! AAAACAGAGAAAATAAAATA+TGG - chr1_4:6100497-6100516 Msa0146460:three_prime_UTR 15.0%
!! AAACAGAGAAAATAAAATAT+GGG - chr1_4:6100498-6100517 Msa0146460:three_prime_UTR 15.0%
!! TGCATATAAAATTAAAGTAT+GGG + chr1_4:6101003-6101022 None:intergenic 15.0%
!! ATGCATATAAAATTAAAGTA+TGG + chr1_4:6101004-6101023 None:intergenic 15.0%
!!! TGTCACAATTATTTTTTTAA+AGG - chr1_4:6108251-6108270 Msa0146460:intron 15.0%
!!! GTCACAATTATTTTTTTAAA+GGG - chr1_4:6108252-6108271 Msa0146460:intron 15.0%
!!! ATAGATATCTAAGTTTTTTT+TGG - chr1_4:6101811-6101830 Msa0146460:intron 15.0%
!!! TAAGGAATTTAAAATAGAAA+TGG + chr1_4:6101952-6101971 None:intergenic 15.0%
!!! AATTAAAATTTTGGTGATAA+TGG - chr1_4:6102138-6102157 Msa0146460:intron 15.0%
!!! AATTAAAATTTTGGTGATAA+TGG - chr1_4:6102138-6102157 Msa0146460:intron 15.0%
!!! AATTAAAATTTTGGTGATAA+TGG - chr1_4:6102138-6102157 Msa0146460:intron 15.0%
!!! TATAGTTTGATTTGTAATTT+TGG + chr1_4:6102553-6102572 None:intergenic 15.0%
!! AAAAAAATGATTAGATTGTT+AGG + chr1_4:6102617-6102636 None:intergenic 15.0%
!! TCACACATAAATAAATATAT+AGG - chr1_4:6104152-6104171 Msa0146460:CDS 15.0%
!!! TTTATTTTCTCTAGTGATTT+TGG + chr1_4:6100468-6100487 None:intergenic 20.0%
!! GTTGCAACATAAAAATAAAA+GGG + chr1_4:6100639-6100658 None:intergenic 20.0%
!! TGTTGCAACATAAAAATAAA+AGG + chr1_4:6100640-6100659 None:intergenic 20.0%
!!! GTTTATATATACACACATTT+TGG - chr1_4:6100797-6100816 Msa0146460:three_prime_UTR 20.0%
!! GTTATTATCAATGTAGTAAT+GGG + chr1_4:6101198-6101217 None:intergenic 20.0%
!! TGAGCATAATGTAATTTATT+AGG - chr1_4:6101548-6101567 Msa0146460:intron 20.0%
!! GAGCATAATGTAATTTATTA+GGG - chr1_4:6101549-6101568 Msa0146460:intron 20.0%
!! AGCATAATGTAATTTATTAG+GGG - chr1_4:6101550-6101569 Msa0146460:intron 20.0%
!!! TGTCACAACTATTTTTTTAA+AGG - chr1_4:6101763-6101782 Msa0146460:intron 20.0%
!!! GTCACAACTATTTTTTTAAA+GGG - chr1_4:6101764-6101783 Msa0146460:intron 20.0%
!!! CCATAAAAAATTTCTAGTTT+TGG + chr1_4:6101877-6101896 None:intergenic 20.0%
!!! CCAAAACTAGAAATTTTTTA+TGG - chr1_4:6101874-6101893 Msa0146460:intron 20.0%
!!! TTACGTAGATATTTAAAACT+TGG + chr1_4:6102007-6102026 None:intergenic 20.0%
!! TTATAAACTTTAGTATATGG+CGG + chr1_4:6102511-6102530 None:intergenic 20.0%
!! ATCTCTTGTGAAAAATTTAT+TGG - chr1_4:6102675-6102694 Msa0146460:intron 20.0%
!! GCTTAAATTCCTTAAAAAAT+TGG - chr1_4:6103542-6103561 Msa0146460:intron 20.0%
!!! GAATCATTTCCAATTTTTTA+AGG + chr1_4:6103554-6103573 None:intergenic 20.0%
!! GTAAGATTAAAATATAGGTT+TGG + chr1_4:6104408-6104427 None:intergenic 20.0%
!! AATACATAAGTGTATTTCAA+TGG - chr1_4:6104483-6104502 Msa0146460:intron 20.0%
!! TTAAAAGTTTCGTTCTTAAT+TGG + chr1_4:6104546-6104565 None:intergenic 20.0%
!!! AATTAAGAACGAAACTTTTA+AGG - chr1_4:6104545-6104564 Msa0146460:intron 20.0%
!! CATGATAAGTCAATAATTAT+AGG + chr1_4:6105506-6105525 None:intergenic 20.0%
!!! TTATTGACTTATCATGAATT+TGG - chr1_4:6105510-6105529 Msa0146460:intron 20.0%
!!! GACTGACTTAAATTTTATTT+TGG + chr1_4:6105778-6105797 None:intergenic 20.0%
!!! AATTTTTTTTTAGGGACATT+AGG + chr1_4:6105827-6105846 None:intergenic 20.0%
!!! TGCATTGTTAATACATTTTT+TGG + chr1_4:6105878-6105897 None:intergenic 20.0%
!! TAATTAAGCTATCATAATTG+AGG - chr1_4:6106021-6106040 Msa0146460:intron 20.0%
!!! AGTTATATTTATTGATTTCC+GGG - chr1_4:6106268-6106287 Msa0146460:intron 20.0%
!!! TACTTTTATCATTTTATTCC+CGG + chr1_4:6106289-6106308 None:intergenic 20.0%
!!! AATTCACTAAATTTTATTCC+CGG - chr1_4:6106320-6106339 Msa0146460:intron 20.0%
!!! AAAAATTTTCCCAAGAAAAA+GGG - chr1_4:6106366-6106385 Msa0146460:intron 20.0%
!!! GTTAGCTTTATAATATTCTT+AGG + chr1_4:6106464-6106483 None:intergenic 20.0%
!! GTATTTAGGAAAAATATGTT+TGG + chr1_4:6106486-6106505 None:intergenic 20.0%
!!! AATTTTATTCCAAGGTATTT+AGG + chr1_4:6106500-6106519 None:intergenic 20.0%
!!! AAGATGAAAATTTTATTCCA+AGG + chr1_4:6106508-6106527 None:intergenic 20.0%
!! GTTATTCCTAAGAATAAATT+TGG - chr1_4:6106543-6106562 Msa0146460:intron 20.0%
!! AGTTTACCAAATTTATTCTT+AGG + chr1_4:6106552-6106571 None:intergenic 20.0%
!!! ATCCTATTTTCTTCTTTTTT+TGG - chr1_4:6106788-6106807 Msa0146460:intron 20.0%
!!! TCCTATTTTCTTCTTTTTTT+GGG - chr1_4:6106789-6106808 Msa0146460:intron 20.0%
!! ATTCCAAACAAAAAGTAATA+GGG + chr1_4:6106881-6106900 None:intergenic 20.0%
!! TGTTGCAACATAAAAAAAAA+GGG + chr1_4:6107151-6107170 None:intergenic 20.0%
!! ATGTTGCAACATAAAAAAAA+AGG + chr1_4:6107152-6107171 None:intergenic 20.0%
!!! GTTTATATATACACACATTT+TGG - chr1_4:6100797-6100816 Msa0146460:three_prime_UTR 20.0%
!! GTTATTATCAATGTAGTAAT+GGG + chr1_4:6101198-6101217 None:intergenic 20.0%
!! CCATTATATATTTGGATTAA+TGG + chr1_4:6107754-6107773 None:intergenic 20.0%
!! CCATTAATCCAAATATATAA+TGG - chr1_4:6107751-6107770 Msa0146460:CDS 20.0%
!! TGAGCATAATGTAATTTATT+AGG - chr1_4:6101548-6101567 Msa0146460:intron 20.0%
!! GAGCATAATGTAATTTATTA+GGG - chr1_4:6101549-6101568 Msa0146460:intron 20.0%
!! AGCATAATGTAATTTATTAG+GGG - chr1_4:6101550-6101569 Msa0146460:intron 20.0%
!!! CCATAAAAAATTTCTAGTTT+TGG + chr1_4:6101877-6101896 None:intergenic 20.0%
!!! CCAAAACTAGAAATTTTTTA+TGG - chr1_4:6101874-6101893 Msa0146460:intron 20.0%
!!! TTAGGTAGATATTTAAAACT+TGG + chr1_4:6108495-6108514 None:intergenic 20.0%
!! AAAACTATAACCGAAAATTA+TGG + chr1_4:6108549-6108568 None:intergenic 20.0%
!! TTATAAACTTTAGTATATGG+TGG + chr1_4:6102511-6102530 None:intergenic 20.0%
!! ATCTCTTGTGAAAAATTTAT+TGG - chr1_4:6102675-6102694 Msa0146460:intron 20.0%
!! TAAATATATTTATAGCTACC+CGG + chr1_4:6102820-6102839 None:intergenic 20.0%
!! GCTTAAATTCCTTAAAAAAT+TGG - chr1_4:6103542-6103561 Msa0146460:intron 20.0%
!!! GAATCATTTCCAATTTTTTA+AGG + chr1_4:6103554-6103573 None:intergenic 20.0%
!! GATAAAAAGATTATGTATTG+TGG - chr1_4:6111031-6111050 Msa0146460:exon 20.0%
! TCACTAGAGAAAATAAAATC+AGG - chr1_4:6100471-6100490 Msa0146460:three_prime_UTR 25.0%
! CACTAGAGAAAATAAAATCA+GGG - chr1_4:6100472-6100491 Msa0146460:three_prime_UTR 25.0%
! AAAATAAAATATGGGTTCCA+CGG - chr1_4:6100506-6100525 Msa0146460:three_prime_UTR 25.0%
! TCAAAACTCAAGAAAATTGA+TGG - chr1_4:6100774-6100793 Msa0146460:three_prime_UTR 25.0%
! CAAAACTCAAGAAAATTGAT+GGG - chr1_4:6100775-6100794 Msa0146460:three_prime_UTR 25.0%
!!! AGTTTTGATGAAGCAATTAA+AGG - chr1_4:6100916-6100935 Msa0146460:CDS 25.0%
!!! GTTTTGATGAAGCAATTAAA+GGG - chr1_4:6100917-6100936 Msa0146460:CDS 25.0%
! TCTATCATCTCATATATGAA+TGG - chr1_4:6101023-6101042 Msa0146460:CDS 25.0%
! GGTTATTATCAATGTAGTAA+TGG + chr1_4:6101199-6101218 None:intergenic 25.0%
! AGTAACTACTAAAATGGAAA+CGG + chr1_4:6101236-6101255 None:intergenic 25.0%
! AATACATTCAGTAGAAATCA+AGG - chr1_4:6101476-6101495 Msa0146460:intron 25.0%
! ATACATTCAGTAGAAATCAA+GGG - chr1_4:6101477-6101496 Msa0146460:intron 25.0%
! ACTTCAAATGTTTAATTGAG+AGG - chr1_4:6101638-6101657 Msa0146460:CDS 25.0%
!!! TAAAATTTTGGTGATAATGG+TGG - chr1_4:6102141-6102160 Msa0146460:intron 25.0%
! AAGTAAAACAAATGGTTGAT+TGG - chr1_4:6102169-6102188 Msa0146460:intron 25.0%
!!! TAAAATTTTGGTGATAATGG+TGG - chr1_4:6102141-6102160 Msa0146460:intron 25.0%
! AAGTAAAACAAATGGTTGAT+TGG - chr1_4:6102169-6102188 Msa0146460:intron 25.0%
! TAGTTGAGAAGTAAAACAAA+TGG - chr1_4:6102397-6102416 Msa0146460:intron 25.0%
! AAGTAAAACAAATGGTTGAT+TGG - chr1_4:6102169-6102188 Msa0146460:intron 25.0%
! TTTATAAATGTACCAGTGAT+AGG + chr1_4:6103480-6103499 None:intergenic 25.0%
!! AATTGTTACTTAGTAGTAGA+CGG + chr1_4:6103632-6103651 None:intergenic 25.0%
! CATTATTCGATTATAAAGCA+AGG - chr1_4:6103698-6103717 Msa0146460:intron 25.0%
! GCTTGTCTAATTGTTTAAAT+TGG - chr1_4:6103948-6103967 Msa0146460:intron 25.0%
! ATTTGAATTCAAATACAGCT+TGG - chr1_4:6104045-6104064 Msa0146460:CDS 25.0%
!! CAAAGTGCTAGAATAAATTA+AGG + chr1_4:6104277-6104296 None:intergenic 25.0%
!! ATGTATTTTATGTTTCCTCT+CGG - chr1_4:6104460-6104479 Msa0146460:CDS 25.0%
! TTACATAAAATTAGGGTTCT+AGG - chr1_4:6104710-6104729 Msa0146460:intron 25.0%
!!! TTCTTTCATCTTTGAAACTT+GGG + chr1_4:6104942-6104961 None:intergenic 25.0%
!! TTTTTAACCTAAAAGCTCAT+GGG + chr1_4:6105046-6105065 None:intergenic 25.0%
!! ATTTTTAACCTAAAAGCTCA+TGG + chr1_4:6105047-6105066 None:intergenic 25.0%
!! AGTTTGTTTAAGTTTCTCTT+TGG + chr1_4:6105454-6105473 None:intergenic 25.0%
!!! GTATCTGCCTTATTTTAATA+TGG + chr1_4:6106137-6106156 None:intergenic 25.0%
!! GATATTGCATTTTATATGCA+GGG - chr1_4:6106186-6106205 Msa0146460:intron 25.0%
!! ATATTGCATTTTATATGCAG+GGG - chr1_4:6106187-6106206 Msa0146460:intron 25.0%
! ACAAACACACAATTTAATTG+TGG + chr1_4:6106244-6106263 None:intergenic 25.0%
!! ATTCACTAAATTTTATTCCC+GGG - chr1_4:6106321-6106340 Msa0146460:intron 25.0%
!! GAAAAATTTTCCCAAGAAAA+AGG - chr1_4:6106365-6106384 Msa0146460:intron 25.0%
!! CATATTTTTCCTAAATACCT+TGG - chr1_4:6106488-6106507 Msa0146460:intron 25.0%
! ACCCAAAAAAAGAAGAAAAT+AGG + chr1_4:6106793-6106812 None:intergenic 25.0%
! AAACAAAAAGTAATAGGGAT+AGG + chr1_4:6106876-6106895 None:intergenic 25.0%
!!! TATCCCTATTACTTTTTGTT+TGG - chr1_4:6106875-6106894 Msa0146460:intron 25.0%
! CATTCCAAACAAAAAGTAAT+AGG + chr1_4:6106882-6106901 None:intergenic 25.0%
!! TATTTTCTCTCTAGTGATTT+TGG + chr1_4:6106978-6106997 None:intergenic 25.0%
! ACTAGAGAGAAAATAAAATC+AGG - chr1_4:6106983-6107002 Msa0146460:intron 25.0%
! CTAGAGAGAAAATAAAATCA+GGG - chr1_4:6106984-6107003 Msa0146460:intron 25.0%
! AAAATAAAATATGGGTTCCA+TGG - chr1_4:6100506-6100525 Msa0146460:three_prime_UTR 25.0%
! TCAAAACTCAAGAAAATTGA+TGG - chr1_4:6100774-6100793 Msa0146460:three_prime_UTR 25.0%
! CAAAACTCAAGAAAATTGAT+GGG - chr1_4:6100775-6100794 Msa0146460:three_prime_UTR 25.0%
!!! AGTTTTGATGAAGCAATTAA+AGG - chr1_4:6100916-6100935 Msa0146460:CDS 25.0%
!!! GTTTTGATGAAGCAATTAAA+GGG - chr1_4:6100917-6100936 Msa0146460:CDS 25.0%
! TCTATCATCTCATATATGAA+TGG - chr1_4:6101023-6101042 Msa0146460:CDS 25.0%
! GGTTATTATCAATGTAGTAA+TGG + chr1_4:6101199-6101218 None:intergenic 25.0%
! AGTAACTACTAAAATGGAAA+CGG + chr1_4:6101236-6101255 None:intergenic 25.0%
! AATACATTCAGTAGAAATCA+AGG - chr1_4:6101476-6101495 Msa0146460:intron 25.0%
! ATACATTCAGTAGAAATCAA+GGG - chr1_4:6101477-6101496 Msa0146460:intron 25.0%
! ACTTCAAATGTTTAATTGAG+AGG - chr1_4:6101638-6101657 Msa0146460:CDS 25.0%
!! TCACATTTGACCATAATTTT+CGG - chr1_4:6102048-6102067 Msa0146460:CDS 25.0%
!!! TAAAATTTTGGTGATAATGG+TGG - chr1_4:6102141-6102160 Msa0146460:intron 25.0%
! AAGTAAAACAAATGGTTGAT+TGG - chr1_4:6102169-6102188 Msa0146460:intron 25.0%
!!! TAAAATTTTGGTGATAATGG+TGG - chr1_4:6102141-6102160 Msa0146460:intron 25.0%
! AAGTAAAACAAATGGTTGAT+TGG - chr1_4:6102169-6102188 Msa0146460:intron 25.0%
!!! TAAAATTTTGGTGATAATGG+TGG - chr1_4:6102141-6102160 Msa0146460:intron 25.0%
! AAGTAAAACAAATGGTTGAT+TGG - chr1_4:6102169-6102188 Msa0146460:intron 25.0%
! TTTATAAATGTACCAGTGAT+AGG + chr1_4:6103480-6103499 None:intergenic 25.0%
!! AATTGTTACTTAGTAGTAGA+CGG + chr1_4:6103632-6103651 None:intergenic 25.0%
! CATTATTCGATTATAAAGCA+AGG - chr1_4:6103698-6103717 Msa0146460:intron 25.0%
! ATTTGAATTCAAATACAGCT+TGG - chr1_4:6104045-6104064 Msa0146460:CDS 25.0%
!! CAAAGTGCTAGAATAAATTA+AGG + chr1_4:6104277-6104296 None:intergenic 25.0%
! AGACAAAACATCAAAACTAA+CGG + chr1_4:6110925-6110944 None:intergenic 25.0%
!!! TTAGTTTTGATGTTTTGTCT+AGG - chr1_4:6110925-6110944 Msa0146460:CDS 25.0%
! GAAATCAAACCTATATATGT+TGG + chr1_4:6110965-6110984 None:intergenic 25.0%
!! TTTTCTCTAGTGATTTTGGT+TGG + chr1_4:6100464-6100483 None:intergenic 30.0%
CATAAAAATAAAAGGGACCT+GGG + chr1_4:6100632-6100651 None:intergenic 30.0%
ACATAAAAATAAAAGGGACC+TGG + chr1_4:6100633-6100652 None:intergenic 30.0%
! GGAAATTCAATATTTTGCGA+GGG + chr1_4:6101086-6101105 None:intergenic 30.0%
! TGGAAATTCAATATTTTGCG+AGG + chr1_4:6101087-6101106 None:intergenic 30.0%
AACCTAGTATAACATCCTTT+GGG - chr1_4:6101142-6101161 Msa0146460:intron 30.0%
GAAAATGATAAACATCCCAA+AGG + chr1_4:6101160-6101179 None:intergenic 30.0%
TAATGGGATGGTTACAAAAA+AGG + chr1_4:6101182-6101201 None:intergenic 30.0%
! TTATCAATGTAGTAATGGGA+TGG + chr1_4:6101194-6101213 None:intergenic 30.0%
GAAACGGTTCATACATTTAA+TGG + chr1_4:6101220-6101239 None:intergenic 30.0%
ATGGTGAGTAACTACTAAAA+TGG + chr1_4:6101242-6101261 None:intergenic 30.0%
AATAATGCTAGTTATCCTGA+TGG + chr1_4:6101526-6101545 None:intergenic 30.0%
ATGTAATTTATTAGGGGTGA+TGG - chr1_4:6101556-6101575 Msa0146460:intron 30.0%
!! ATGGTTTGTTAGATTCTCTA+TGG - chr1_4:6101575-6101594 Msa0146460:intron 30.0%
! GAAGTTTTACATAAACTGTG+TGG + chr1_4:6101623-6101642 None:intergenic 30.0%
GAACACAAATAGAACAAAGT+TGG + chr1_4:6101679-6101698 None:intergenic 30.0%
TTCAACATCATCTAGTGATA+AGG - chr1_4:6101696-6101715 Msa0146460:CDS 30.0%
AAGGGTTAATGACAATGATT+TGG - chr1_4:6101782-6101801 Msa0146460:intron 30.0%
AGGGTTAATGACAATGATTT+GGG - chr1_4:6101783-6101802 Msa0146460:intron 30.0%
AATTCCTTAACATATGCCTT+TGG - chr1_4:6101963-6101982 Msa0146460:CDS 30.0%
ATTCCTTAACATATGCCTTT+GGG - chr1_4:6101964-6101983 Msa0146460:CDS 30.0%
TGGTTGAGAAGTAAAACAAA+TGG - chr1_4:6102161-6102180 Msa0146460:intron 30.0%
TAAAACAAATGGTTGATTGG+TGG - chr1_4:6102172-6102191 Msa0146460:intron 30.0%
AATAGCCTCTTCATTATTCA+AGG - chr1_4:6102219-6102238 Msa0146460:intron 30.0%
ATAGCCTCTTCATTATTCAA+GGG - chr1_4:6102220-6102239 Msa0146460:intron 30.0%
TGGTTGAGAAGTAAAACAAA+TGG - chr1_4:6102161-6102180 Msa0146460:intron 30.0%
TAAAACAAATGGTTGATTGG+TGG - chr1_4:6102172-6102191 Msa0146460:intron 30.0%
AATAGCCTCTTCATTATTCA+AGG - chr1_4:6102219-6102238 Msa0146460:intron 30.0%
ATAGCCTCTTCATTATTCAA+GGG - chr1_4:6102220-6102239 Msa0146460:intron 30.0%
TAAAACAAATGGTTGATTGG+TGG - chr1_4:6102172-6102191 Msa0146460:intron 30.0%
AATAGCCTCTTCATTATTCA+AGG - chr1_4:6102219-6102238 Msa0146460:intron 30.0%
ATAGCCTCTTCATTATTCAA+GGG - chr1_4:6102220-6102239 Msa0146460:intron 30.0%
TATATTTATAGCTACCCAGT+GGG + chr1_4:6102816-6102835 None:intergenic 30.0%
ATATATTTATAGCTACCCAG+TGG + chr1_4:6102817-6102836 None:intergenic 30.0%
AGTAGTGGTGTAAAACAATA+TGG - chr1_4:6102861-6102880 Msa0146460:intron 30.0%
AGTACAGGTGTATAACAATA+TGG - chr1_4:6102919-6102938 Msa0146460:intron 30.0%
AGGTGTATAACAATATGGTT+GGG - chr1_4:6102924-6102943 Msa0146460:intron 30.0%
ACGATGTGTAAATCAATCTA+CGG + chr1_4:6103063-6103082 None:intergenic 30.0%
TTGATCTTCAGTAACGTTTA+GGG + chr1_4:6103095-6103114 None:intergenic 30.0%
TTTGATCTTCAGTAACGTTT+AGG + chr1_4:6103096-6103115 None:intergenic 30.0%
!!! TTTTGTTTCTAAGACACTTG+CGG - chr1_4:6103332-6103351 Msa0146460:intron 30.0%
ACAATTGATCGAAGATAACA+TGG - chr1_4:6103646-6103665 Msa0146460:intron 30.0%
! CATATTCTTGTTTGAGCATA+TGG - chr1_4:6103757-6103776 Msa0146460:intron 30.0%
CATTAAGTACTTACTTTGTG+GGG + chr1_4:6103874-6103893 None:intergenic 30.0%
GCATTAAGTACTTACTTTGT+GGG + chr1_4:6103875-6103894 None:intergenic 30.0%
AGCATTAAGTACTTACTTTG+TGG + chr1_4:6103876-6103895 None:intergenic 30.0%
CAAGAATATTCCAGATCAAT+TGG - chr1_4:6103982-6104001 Msa0146460:intron 30.0%
ATCAAAGAAGATCAAAGACT+TGG - chr1_4:6104021-6104040 Msa0146460:intron 30.0%
TCAAAGAAGATCAAAGACTT+GGG - chr1_4:6104022-6104041 Msa0146460:intron 30.0%
ATTGATACATGCAGAGAAAA+AGG - chr1_4:6104088-6104107 Msa0146460:CDS 30.0%
TTGATACATGCAGAGAAAAA+GGG - chr1_4:6104089-6104108 Msa0146460:CDS 30.0%
! ATTGGTGCTTTAACAAATTC+AGG + chr1_4:6104121-6104140 None:intergenic 30.0%
! GTTAAAGCACCAATAAGTAA+TGG - chr1_4:6104127-6104146 Msa0146460:CDS 30.0%
GAATAAATTAAGGACATGGA+TGG + chr1_4:6104267-6104286 None:intergenic 30.0%
GCTAGAATAAATTAAGGACA+TGG + chr1_4:6104271-6104290 None:intergenic 30.0%
! GAGAAACTTGTCTTTAGAAA+CGG + chr1_4:6104438-6104457 None:intergenic 30.0%
ATTTCTTTACCTTGGATTGT+TGG + chr1_4:6104770-6104789 None:intergenic 30.0%
TTGAGTAGATTTCTTTACCT+TGG + chr1_4:6104778-6104797 None:intergenic 30.0%
!! GTTCTTTCATCTTTGAAACT+TGG + chr1_4:6104943-6104962 None:intergenic 30.0%
AGATGAAAGAACAAGTCTAA+TGG - chr1_4:6104951-6104970 Msa0146460:intron 30.0%
! CGTTTCAAAATTTCAAGTGA+TGG + chr1_4:6105403-6105422 None:intergenic 30.0%
AATAAAATCCACCATTGAAC+AGG + chr1_4:6105673-6105692 None:intergenic 30.0%
CGAAACATGGTTAAAACATT+AGG + chr1_4:6105853-6105872 None:intergenic 30.0%
!!! ACATTTTTTGGTTCGAAACA+TGG + chr1_4:6105866-6105885 None:intergenic 30.0%
! GGATATTGCATTTTATATGC+AGG - chr1_4:6106185-6106204 Msa0146460:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG + chr1_4:6106236-6106255 None:intergenic 30.0%
TATGAATTTATTCCCATCTC+CGG + chr1_4:6106406-6106425 None:intergenic 30.0%
ATGTCAGATCACATCAAATA+TGG + chr1_4:6106654-6106673 None:intergenic 30.0%
! TTTGGGTAACATTTGTTGAT+TGG - chr1_4:6106806-6106825 Msa0146460:intron 30.0%
ACATAAAAAAAAAGGGACCT+GGG + chr1_4:6107144-6107163 None:intergenic 30.0%
AACATAAAAAAAAAGGGACC+TGG + chr1_4:6107145-6107164 None:intergenic 30.0%
! GGAAATTCAATATTTTGCGA+GGG + chr1_4:6101086-6101105 None:intergenic 30.0%
! TGGAAATTCAATATTTTGCG+AGG + chr1_4:6101087-6101106 None:intergenic 30.0%
AACCTAGTATAACATCCTTT+GGG - chr1_4:6101142-6101161 Msa0146460:intron 30.0%
GAAAATGATAAACATCCCAA+AGG + chr1_4:6101160-6101179 None:intergenic 30.0%
TAATGGGATGGTTACAAAAA+AGG + chr1_4:6101182-6101201 None:intergenic 30.0%
! TTATCAATGTAGTAATGGGA+TGG + chr1_4:6101194-6101213 None:intergenic 30.0%
ATGGTGAGTAACTACTAAAA+TGG + chr1_4:6101242-6101261 None:intergenic 30.0%
AATAATGCTAGTTATCCTGA+TGG + chr1_4:6101526-6101545 None:intergenic 30.0%
ATGTAATTTATTAGGGGTGA+TGG - chr1_4:6101556-6101575 Msa0146460:intron 30.0%
!! ATGGTTTGTTAGATTCTCTA+TGG - chr1_4:6101575-6101594 Msa0146460:intron 30.0%
! GAAGTTTTACATAAACTGTG+TGG + chr1_4:6101623-6101642 None:intergenic 30.0%
GAACACAAATAGAACAAAGT+TGG + chr1_4:6101679-6101698 None:intergenic 30.0%
TTCAACATCATCTAGTGATA+AGG - chr1_4:6101696-6101715 Msa0146460:CDS 30.0%
AAGGGTTAATGACAATGATT+TGG - chr1_4:6101782-6101801 Msa0146460:intron 30.0%
AGGGTTAATGACAATGATTT+GGG - chr1_4:6101783-6101802 Msa0146460:intron 30.0%
AATTCCTTAACATATGCCTT+TGG - chr1_4:6101963-6101982 Msa0146460:CDS 30.0%
ATTCCTTAACATATGCCTTT+GGG - chr1_4:6101964-6101983 Msa0146460:CDS 30.0%
ATACCATCTCAATCTCATTT+AGG + chr1_4:6102025-6102044 None:intergenic 30.0%
TGGTTGAGAAGTAAAACAAA+TGG - chr1_4:6102161-6102180 Msa0146460:intron 30.0%
TAAAACAAATGGTTGATTGG+TGG - chr1_4:6102172-6102191 Msa0146460:intron 30.0%
AATAGCCTCTTCATTATTCA+AGG - chr1_4:6102219-6102238 Msa0146460:intron 30.0%
ATAGCCTCTTCATTATTCAA+GGG - chr1_4:6102220-6102239 Msa0146460:intron 30.0%
TGGTTGAGAAGTAAAACAAA+TGG - chr1_4:6102161-6102180 Msa0146460:intron 30.0%
TAAAACAAATGGTTGATTGG+TGG - chr1_4:6102172-6102191 Msa0146460:intron 30.0%
AATAGCCTCTTCATTATTCA+AGG - chr1_4:6102219-6102238 Msa0146460:intron 30.0%
ATAGCCTCTTCATTATTCAA+GGG - chr1_4:6102220-6102239 Msa0146460:intron 30.0%
TGGTTGAGAAGTAAAACAAA+TGG - chr1_4:6102161-6102180 Msa0146460:intron 30.0%
TAAAACAAATGGTTGATTGG+TGG - chr1_4:6102172-6102191 Msa0146460:intron 30.0%
AATAGCCTCTTCATTATTCA+AGG - chr1_4:6102219-6102238 Msa0146460:intron 30.0%
ATAGCCTCTTCATTATTCAA+GGG - chr1_4:6102220-6102239 Msa0146460:intron 30.0%
AGTAGTGGTGTATAACAATA+TGG - chr1_4:6109348-6109367 Msa0146460:intron 30.0%
AGTACAGGTGTATAACAATA+TGG - chr1_4:6102919-6102938 Msa0146460:intron 30.0%
AGGTGTATAACAATATGGTT+GGG - chr1_4:6102924-6102943 Msa0146460:intron 30.0%
ACGATGTGTAAATCAATCTA+CGG + chr1_4:6103063-6103082 None:intergenic 30.0%
TTGATCTTCAGTAACGTTTA+GGG + chr1_4:6103095-6103114 None:intergenic 30.0%
TTTGATCTTCAGTAACGTTT+AGG + chr1_4:6103096-6103115 None:intergenic 30.0%
!!! TTTTGTTTCTAAGACACTTG+CGG - chr1_4:6103332-6103351 Msa0146460:intron 30.0%
ACAATTGATCGAAGATAACA+TGG - chr1_4:6103646-6103665 Msa0146460:intron 30.0%
! CATATTCTTGTTTGAGCATA+TGG - chr1_4:6103757-6103776 Msa0146460:intron 30.0%
CATTAAGTACTTACTTTGTG+GGG + chr1_4:6103874-6103893 None:intergenic 30.0%
GCATTAAGTACTTACTTTGT+GGG + chr1_4:6103875-6103894 None:intergenic 30.0%
AGCATTAAGTACTTACTTTG+TGG + chr1_4:6103876-6103895 None:intergenic 30.0%
CAAGAATATTCCAGATCAAT+TGG - chr1_4:6103982-6104001 Msa0146460:intron 30.0%
ATCAAAGAAGATCAAAGACT+TGG - chr1_4:6104021-6104040 Msa0146460:intron 30.0%
TCAAAGAAGATCAAAGACTT+GGG - chr1_4:6104022-6104041 Msa0146460:intron 30.0%
ATTGATACATGCAGAGAAAA+AGG - chr1_4:6104088-6104107 Msa0146460:CDS 30.0%
TTGATACATGCAGAGAAAAA+GGG - chr1_4:6104089-6104108 Msa0146460:CDS 30.0%
! ATTGGTGCTTTAACAAATTC+AGG + chr1_4:6104121-6104140 None:intergenic 30.0%
! GTTAAAGCACCAATAAGTAA+TGG - chr1_4:6104127-6104146 Msa0146460:CDS 30.0%
GAATAAATTAAGGACATGGA+TGG + chr1_4:6104267-6104286 None:intergenic 30.0%
GCTAGAATAAATTAAGGACA+TGG + chr1_4:6104271-6104290 None:intergenic 30.0%
AAACATCAAAACTAACGGTT+TGG + chr1_4:6110920-6110939 None:intergenic 30.0%
CTATATATGTTGGAATTGAC+CGG + chr1_4:6110955-6110974 None:intergenic 30.0%
TCAAAACTAAATCGAATCCA+CGG + chr1_4:6111009-6111028 None:intergenic 30.0%
GAATGCAGAAAACTTGAAGA+AGG - chr1_4:6100819-6100838 Msa0146460:three_prime_UTR 35.0%
ATTAAAGTATGGGTACCTCA+GGG + chr1_4:6100993-6101012 None:intergenic 35.0%
AATTAAAGTATGGGTACCTC+AGG + chr1_4:6100994-6101013 None:intergenic 35.0%
CACTATGAAGCAATGTTCTT+TGG + chr1_4:6101107-6101126 None:intergenic 35.0%
CAACCTAGTATAACATCCTT+TGG - chr1_4:6101141-6101160 Msa0146460:intron 35.0%
ATCCCAAAGGATGTTATACT+AGG + chr1_4:6101147-6101166 None:intergenic 35.0%
! GTTTGTTAGATTCTCTATGG+TGG - chr1_4:6101578-6101597 Msa0146460:CDS 35.0%
TAGTGATAAGGACAGTGAAT+AGG - chr1_4:6101708-6101727 Msa0146460:CDS 35.0%
TTCCTTAACATATGCCTTTG+GGG - chr1_4:6101965-6101984 Msa0146460:CDS 35.0%
CTACGTAAATGAGATTGAGA+TGG - chr1_4:6102019-6102038 Msa0146460:CDS 35.0%
TAGCCTCTTCATTATTCAAG+GGG - chr1_4:6102221-6102240 Msa0146460:intron 35.0%
TAGCCTCTTCATTATTCAAG+GGG - chr1_4:6102221-6102240 Msa0146460:intron 35.0%
TAGCCTCTTCATTATTCAAG+GGG - chr1_4:6102221-6102240 Msa0146460:intron 35.0%
AATCCCCTTGAATAATGAAG+AGG + chr1_4:6102463-6102482 None:intergenic 35.0%
CTTCTGCAAAAAGAAATGTG+TGG - chr1_4:6102747-6102766 Msa0146460:intron 35.0%
CAGGTGTATAACAATATGGT+TGG - chr1_4:6102923-6102942 Msa0146460:intron 35.0%
ATGATCAAGCCTACCATAAA+AGG - chr1_4:6102995-6103014 Msa0146460:intron 35.0%
! AATCAATCTACGGACAGTTT+TGG + chr1_4:6103053-6103072 None:intergenic 35.0%
GGCATAGTTGGAATAAGAAA+AGG + chr1_4:6103432-6103451 None:intergenic 35.0%
!! ATGGTTTTGCACAAATTTGC+AGG - chr1_4:6103665-6103684 Msa0146460:intron 35.0%
TTTGAGCATATGGAAGTAGA+AGG - chr1_4:6103767-6103786 Msa0146460:intron 35.0%
TTGAGCATATGGAAGTAGAA+GGG - chr1_4:6103768-6103787 Msa0146460:intron 35.0%
TGAATTCAAATACAGCTTGG+AGG - chr1_4:6104048-6104067 Msa0146460:CDS 35.0%
TGTGTGACACCATTACTTAT+TGG + chr1_4:6104139-6104158 None:intergenic 35.0%
!! GCTTTAGGATCTTAATTCAG+TGG - chr1_4:6104205-6104224 Msa0146460:intron 35.0%
AGAAATACGTATTACTGAGG+CGG + chr1_4:6104241-6104260 None:intergenic 35.0%
ACGAGAAATACGTATTACTG+AGG + chr1_4:6104244-6104263 None:intergenic 35.0%
TTGGGTCTATATTTGCAAGT+GGG + chr1_4:6104322-6104341 None:intergenic 35.0%
ATTGGGTCTATATTTGCAAG+TGG + chr1_4:6104323-6104342 None:intergenic 35.0%
ACTCATGTGATGTAGGAATT+GGG + chr1_4:6104340-6104359 None:intergenic 35.0%
TACTCATGTGATGTAGGAAT+TGG + chr1_4:6104341-6104360 None:intergenic 35.0%
TTCTCTTACTCATGTGATGT+AGG + chr1_4:6104347-6104366 None:intergenic 35.0%
ATACACTTATGTATTCCGAG+AGG + chr1_4:6104478-6104497 None:intergenic 35.0%
TAGCAATCAACCATGAGAAT+AGG + chr1_4:6104517-6104536 None:intergenic 35.0%
!!! ACGAAACTTTTAAGGTCTCA+AGG - chr1_4:6104553-6104572 Msa0146460:intron 35.0%
ATTGAAGGATCGAAAGATGA+AGG + chr1_4:6104639-6104658 None:intergenic 35.0%
!! TAAAATTAGGGTTCTAGGCT+TGG - chr1_4:6104715-6104734 Msa0146460:intron 35.0%
! GGCTTGGTTTGATAAAGATT+AGG - chr1_4:6104731-6104750 Msa0146460:intron 35.0%
AGACAAAGAGGTTAAAGAGA+TGG - chr1_4:6104811-6104830 Msa0146460:intron 35.0%
GTTCCTTGGACTATAAATAG+AGG + chr1_4:6104979-6104998 None:intergenic 35.0%
AACAACCTAAACCCTAGAAA+AGG - chr1_4:6104996-6105015 Msa0146460:intron 35.0%
!!! TAATGCCTTTTCTAGGGTTT+AGG + chr1_4:6105004-6105023 None:intergenic 35.0%
! CATTGCTAATGCCTTTTCTA+GGG + chr1_4:6105010-6105029 None:intergenic 35.0%
! ACATTGCTAATGCCTTTTCT+AGG + chr1_4:6105011-6105030 None:intergenic 35.0%
ATATCACTAAACAAAGCAGC+TGG - chr1_4:6105065-6105084 Msa0146460:intron 35.0%
!!! TTTTGAGATTTCAGCAAGCA+CGG + chr1_4:6105124-6105143 None:intergenic 35.0%
TGAAATCTCAAAAGCAGCAA+AGG - chr1_4:6105131-6105150 Msa0146460:intron 35.0%
GAAATCTCAAAAGCAGCAAA+GGG - chr1_4:6105132-6105151 Msa0146460:intron 35.0%
TTGCTTGAGAAGTGAAAGAT+GGG + chr1_4:6105302-6105321 None:intergenic 35.0%
! ATTTCAAGTGATGGAGAATC+TGG + chr1_4:6105394-6105413 None:intergenic 35.0%
AGCTGACATGTTACATTAGT+GGG + chr1_4:6105611-6105630 None:intergenic 35.0%
!!! CATTGAACAGGAGGTATTTT+AGG + chr1_4:6105661-6105680 None:intergenic 35.0%
CTAAAATACCTCCTGTTCAA+TGG - chr1_4:6105659-6105678 Msa0146460:intron 35.0%
! AATTTTCCCAAGAAAAAGGG+TGG - chr1_4:6106369-6106388 Msa0146460:intron 35.0%
! ATTTTCCCAAGAAAAAGGGT+GGG - chr1_4:6106370-6106389 Msa0146460:intron 35.0%
! TTATTCCCACCCTTTTTCTT+GGG + chr1_4:6106378-6106397 None:intergenic 35.0%
! TTTATTCCCACCCTTTTTCT+TGG + chr1_4:6106379-6106398 None:intergenic 35.0%
TTGTGTGTGTGTGAAGAAAA+GGG + chr1_4:6106602-6106621 None:intergenic 35.0%
TTTGTGTGTGTGTGAAGAAA+AGG + chr1_4:6106603-6106622 None:intergenic 35.0%
TACAAATTTATGAGAGGGAG+AGG + chr1_4:6106846-6106865 None:intergenic 35.0%
TCTCCCTCTCATAAATTTGT+AGG - chr1_4:6106845-6106864 Msa0146460:intron 35.0%
TGGCCTACAAATTTATGAGA+GGG + chr1_4:6106851-6106870 None:intergenic 35.0%
!! TTCTCTCTAGTGATTTTGGT+TGG + chr1_4:6106974-6106993 None:intergenic 35.0%
GAATGCAGAAAACTTGAAGA+AGG - chr1_4:6100819-6100838 Msa0146460:three_prime_UTR 35.0%
ATTAAAGTATGGGTACCTCA+GGG + chr1_4:6100993-6101012 None:intergenic 35.0%
AATTAAAGTATGGGTACCTC+AGG + chr1_4:6100994-6101013 None:intergenic 35.0%
CACTATGAAGCAATGTTCTT+TGG + chr1_4:6101107-6101126 None:intergenic 35.0%
CAACCTAGTATAACATCCTT+TGG - chr1_4:6101141-6101160 Msa0146460:intron 35.0%
ATCCCAAAGGATGTTATACT+AGG + chr1_4:6101147-6101166 None:intergenic 35.0%
GAAACGGTTCGTACATTTAA+TGG + chr1_4:6107713-6107732 None:intergenic 35.0%
! GTTTGTTAGATTCTCTATGG+TGG - chr1_4:6101578-6101597 Msa0146460:CDS 35.0%
TAGTGATAAGGACAGTGAAT+AGG - chr1_4:6101708-6101727 Msa0146460:CDS 35.0%
TTCCTTAACATATGCCTTTG+GGG - chr1_4:6101965-6101984 Msa0146460:CDS 35.0%
CTACCTAAATGAGATTGAGA+TGG - chr1_4:6108507-6108526 Msa0146460:CDS 35.0%
TAGCCTCTTCATTATTCAAG+GGG - chr1_4:6102221-6102240 Msa0146460:intron 35.0%
TAGCCTCTTCATTATTCAAG+GGG - chr1_4:6102221-6102240 Msa0146460:intron 35.0%
TAGCCTCTTCATTATTCAAG+GGG - chr1_4:6102221-6102240 Msa0146460:intron 35.0%
AATCCCCTTGAATAATGAAG+AGG + chr1_4:6102463-6102482 None:intergenic 35.0%
TATATTTATAGCTACCCGGT+GGG + chr1_4:6109303-6109322 None:intergenic 35.0%
ATATATTTATAGCTACCCGG+TGG + chr1_4:6109304-6109323 None:intergenic 35.0%
CAGGTGTATAACAATATGGT+TGG - chr1_4:6102923-6102942 Msa0146460:intron 35.0%
ATGATCAAGCCTACCATAAA+AGG - chr1_4:6102995-6103014 Msa0146460:intron 35.0%
! AATCAATCTACGGACAGTTT+TGG + chr1_4:6103053-6103072 None:intergenic 35.0%
GGCATAGTTGGAATAAGAAA+AGG + chr1_4:6103432-6103451 None:intergenic 35.0%
!! ATGGTTTTGCACAAATTTGC+AGG - chr1_4:6103665-6103684 Msa0146460:intron 35.0%
TTTGAGCATATGGAAGTAGA+AGG - chr1_4:6103767-6103786 Msa0146460:intron 35.0%
TTGAGCATATGGAAGTAGAA+GGG - chr1_4:6103768-6103787 Msa0146460:intron 35.0%
TGAATTCAAATACAGCTTGG+AGG - chr1_4:6104048-6104067 Msa0146460:CDS 35.0%
TGTGTGACACCATTACTTAT+TGG + chr1_4:6104139-6104158 None:intergenic 35.0%
!! GCTTTAGGATCTTAATTCAG+TGG - chr1_4:6104205-6104224 Msa0146460:intron 35.0%
AGAAATACGTATTACTGAGG+CGG + chr1_4:6104241-6104260 None:intergenic 35.0%
ACGAGAAATACGTATTACTG+AGG + chr1_4:6104244-6104263 None:intergenic 35.0%
TTGGGTCTATATTTGCAAGT+GGG + chr1_4:6104322-6104341 None:intergenic 35.0%
ATTGGGTCTATATTTGCAAG+TGG + chr1_4:6104323-6104342 None:intergenic 35.0%
ACTCATGTGATGTAGGAATT+GGG + chr1_4:6104340-6104359 None:intergenic 35.0%
TACTCATGTGATGTAGGAAT+TGG + chr1_4:6104341-6104360 None:intergenic 35.0%
TTCTCTTACTCATGTGATGT+AGG + chr1_4:6104347-6104366 None:intergenic 35.0%
! ATCAAAACTAACGGTTTGGA+TGG + chr1_4:6110916-6110935 None:intergenic 35.0%
CGGTCAATTCCAACATATAT+AGG - chr1_4:6110953-6110972 Msa0146460:CDS 35.0%
TTGATTTCAGCTGCTTCAAT+AGG - chr1_4:6110977-6110996 Msa0146460:CDS 35.0%
CAAAACTAAATCGAATCCAC+GGG + chr1_4:6111008-6111027 None:intergenic 35.0%
!!! TCTAGTGATTTTGGTTGGCT+TGG + chr1_4:6100459-6100478 None:intergenic 40.0%
CAAAGAGCAAACTGTCCATT+TGG - chr1_4:6100869-6100888 Msa0146460:three_prime_UTR 40.0%
CAAAACTACCTTCTTCACCA+AGG + chr1_4:6100903-6100922 None:intergenic 40.0%
! GAAGCAATTAAAGGGTGTAC+TGG - chr1_4:6100925-6100944 Msa0146460:CDS 40.0%
! GTGTACTGGAGTTTTTCATG+TGG - chr1_4:6100939-6100958 Msa0146460:CDS 40.0%
! TTTTCATGTGGCTACACCTA+TGG - chr1_4:6100951-6100970 Msa0146460:CDS 40.0%
!! ACCTATGGATTTTGAGTCCA+AGG - chr1_4:6100966-6100985 Msa0146460:CDS 40.0%
TCCTTGGACTCAAAATCCAT+AGG + chr1_4:6100970-6100989 None:intergenic 40.0%
TAAATTAGTCGTGATCCCGT+CGG + chr1_4:6101377-6101396 None:intergenic 40.0%
TTTGTTCCTTCCACGATTCA+AGG - chr1_4:6101409-6101428 Msa0146460:intron 40.0%
TTGTTCCTTCCACGATTCAA+GGG - chr1_4:6101410-6101429 Msa0146460:intron 40.0%
! ATTTCGCTAGCTTATCCATC+AGG - chr1_4:6101508-6101527 Msa0146460:intron 40.0%
! TCTTGTTATCTTGTGCCCTT+AGG - chr1_4:6101835-6101854 Msa0146460:intron 40.0%
! CTTGTTATCTTGTGCCCTTA+GGG - chr1_4:6101836-6101855 Msa0146460:intron 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG + chr1_4:6101853-6101872 None:intergenic 40.0%
!! ATTCCTTAACTTGTGCCCTA+AGG + chr1_4:6101854-6101873 None:intergenic 40.0%
AATGTTAACATGTGCCCCAA+AGG + chr1_4:6101982-6102001 None:intergenic 40.0%
CATCCCCTTGAATAATGAAG+AGG + chr1_4:6102227-6102246 None:intergenic 40.0%
CATCCCCTTGAATAATGAAG+AGG + chr1_4:6102227-6102246 None:intergenic 40.0%
ACAAGAGATGATCAGTGTTC+AGG + chr1_4:6102664-6102683 None:intergenic 40.0%
TTGTGCACGATCTTAAGTAG+TGG - chr1_4:6102846-6102865 Msa0146460:intron 40.0%
! TCTAGCACTCCTTTTATGGT+AGG + chr1_4:6103007-6103026 None:intergenic 40.0%
! GATGTCTAGCACTCCTTTTA+TGG + chr1_4:6103011-6103030 None:intergenic 40.0%
! TTCAGTAACGTTTAGGGTTC+CGG + chr1_4:6103089-6103108 None:intergenic 40.0%
TGAAGATCAAAAGCCCTTGT+GGG - chr1_4:6103105-6103124 Msa0146460:intron 40.0%
! ATTTGCCAAAGAGCACAAGA+TGG - chr1_4:6103371-6103390 Msa0146460:intron 40.0%
AGAAAAGGACCAACAACAAG+AGG + chr1_4:6103417-6103436 None:intergenic 40.0%
TGTACCAGTGATAGGAGAAA+GGG + chr1_4:6103472-6103491 None:intergenic 40.0%
ATGTACCAGTGATAGGAGAA+AGG + chr1_4:6103473-6103492 None:intergenic 40.0%
! TGTTACTTAGTAGTAGACGG+TGG + chr1_4:6103629-6103648 None:intergenic 40.0%
GCACAAATTTGCAGGAAATG+AGG - chr1_4:6103673-6103692 Msa0146460:intron 40.0%
GATCATCCAAGTGGACAAAT+TGG + chr1_4:6103724-6103743 None:intergenic 40.0%
CTTCACAAAGATCATCCAAG+TGG + chr1_4:6103733-6103752 None:intergenic 40.0%
TTGTGGGGATATTGTACTCT+GGG + chr1_4:6103859-6103878 None:intergenic 40.0%
TTTGTGGGGATATTGTACTC+TGG + chr1_4:6103860-6103879 None:intergenic 40.0%
CTTTATGTGTGTGTCTGTGA+TGG - chr1_4:6104183-6104202 Msa0146460:CDS 40.0%
GGAACAAGTGAGATTAGACA+AGG + chr1_4:6104608-6104627 None:intergenic 40.0%
CGAAAGATGAAGGTTAGTAC+TGG + chr1_4:6104629-6104648 None:intergenic 40.0%
TAGACTCATCCAACAATCCA+AGG - chr1_4:6104758-6104777 Msa0146460:intron 40.0%
CATGTTCATCGTAGACAAAG+AGG - chr1_4:6104799-6104818 Msa0146460:intron 40.0%
GCTCCTCTATTTATAGTCCA+AGG - chr1_4:6104973-6104992 Msa0146460:intron 40.0%
! AAGACAACCCATGAGCTTTT+AGG - chr1_4:6105036-6105055 Msa0146460:intron 40.0%
! CAGGCAAGGTTGATTCAAAA+GGG - chr1_4:6105220-6105239 Msa0146460:intron 40.0%
! AGGCAAGGTTGATTCAAAAG+GGG - chr1_4:6105221-6105240 Msa0146460:intron 40.0%
CTTGCTTGAGAAGTGAAAGA+TGG + chr1_4:6105303-6105322 None:intergenic 40.0%
GCATGGAGCATAAAAATGCA+TGG + chr1_4:6105333-6105352 None:intergenic 40.0%
! CTAAAAGCATGATTGAGGCA+TGG + chr1_4:6105350-6105369 None:intergenic 40.0%
! TGGTCTTGAAGGAAAAGAAG+GGG + chr1_4:6105374-6105393 None:intergenic 40.0%
!! CTGGTCTTGAAGGAAAAGAA+GGG + chr1_4:6105375-6105394 None:intergenic 40.0%
!! TCTGGTCTTGAAGGAAAAGA+AGG + chr1_4:6105376-6105395 None:intergenic 40.0%
GAGCTGACATGTTACATTAG+TGG + chr1_4:6105612-6105631 None:intergenic 40.0%
AAATACCTCCTGTTCAATGG+TGG - chr1_4:6105662-6105681 Msa0146460:intron 40.0%
AAAATCCACCATTGAACAGG+AGG + chr1_4:6105670-6105689 None:intergenic 40.0%
TCCCGGGTATAAAATGTTTC+TGG - chr1_4:6106337-6106356 Msa0146460:intron 40.0%
! CCCAGAAACATTTTATACCC+GGG + chr1_4:6106341-6106360 None:intergenic 40.0%
CCCGGGTATAAAATGTTTCT+GGG - chr1_4:6106338-6106357 Msa0146460:intron 40.0%
! CCCCAGAAACATTTTATACC+CGG + chr1_4:6106342-6106361 None:intergenic 40.0%
! CCGGGTATAAAATGTTTCTG+GGG - chr1_4:6106339-6106358 Msa0146460:intron 40.0%
AAGGGTGGGAATAAAGTTTC+CGG - chr1_4:6106384-6106403 Msa0146460:intron 40.0%
GGAATAAAGTTTCCGGAGAT+GGG - chr1_4:6106391-6106410 Msa0146460:intron 40.0%
AGAAAAGGGGGAATCACTTA+GGG + chr1_4:6106588-6106607 None:intergenic 40.0%
AAGAAAAGGGGGAATCACTT+AGG + chr1_4:6106589-6106608 None:intergenic 40.0%
TGTGTGTGTGTGAAGAAAAG+GGG + chr1_4:6106601-6106620 None:intergenic 40.0%
! GGTAACATTTGTTGATTGGC+AGG - chr1_4:6106810-6106829 Msa0146460:intron 40.0%
GTGGCCTACAAATTTATGAG+AGG + chr1_4:6106852-6106871 None:intergenic 40.0%
AAAAGTAATAGGGATAGGCG+TGG + chr1_4:6106871-6106890 None:intergenic 40.0%
!!! TCTAGTGATTTTGGTTGGCT+TGG + chr1_4:6100459-6100478 None:intergenic 40.0%
CAAAGAGCAAACTGTCCATT+TGG - chr1_4:6100869-6100888 Msa0146460:three_prime_UTR 40.0%
CAAAACTACCTTCTTCACCA+AGG + chr1_4:6100903-6100922 None:intergenic 40.0%
! GAAGCAATTAAAGGGTGTAC+TGG - chr1_4:6100925-6100944 Msa0146460:CDS 40.0%
! GTGTACTGGAGTTTTTCATG+TGG - chr1_4:6100939-6100958 Msa0146460:CDS 40.0%
! TTTTCATGTGGCTACACCTA+TGG - chr1_4:6100951-6100970 Msa0146460:CDS 40.0%
!! ACCTATGGATTTTGAGTCCA+AGG - chr1_4:6100966-6100985 Msa0146460:CDS 40.0%
TCCTTGGACTCAAAATCCAT+AGG + chr1_4:6100970-6100989 None:intergenic 40.0%
TAAATTAGTCGTGATCCCGT+CGG + chr1_4:6101377-6101396 None:intergenic 40.0%
! ATTTCGCTAGCTTATCCATC+AGG - chr1_4:6101508-6101527 Msa0146460:intron 40.0%
! TCTTGTTATCTTGTGCCCTT+AGG - chr1_4:6101835-6101854 Msa0146460:intron 40.0%
! CTTGTTATCTTGTGCCCTTA+GGG - chr1_4:6101836-6101855 Msa0146460:intron 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG + chr1_4:6101853-6101872 None:intergenic 40.0%
!! ATTCCTTAACTTGTGCCCTA+AGG + chr1_4:6101854-6101873 None:intergenic 40.0%
AATGTTAACATGTGCCCCAA+AGG + chr1_4:6101982-6102001 None:intergenic 40.0%
CATCCCCTTGAATAATGAAG+AGG + chr1_4:6102227-6102246 None:intergenic 40.0%
CATCCCCTTGAATAATGAAG+AGG + chr1_4:6102227-6102246 None:intergenic 40.0%
ACAAGAGATGATCAGTGTTC+AGG + chr1_4:6102664-6102683 None:intergenic 40.0%
CTGCTGCAAAAAGAAATGTG+TGG - chr1_4:6109234-6109253 Msa0146460:intron 40.0%
TTGTGCACGATCTTAAGTAG+TGG - chr1_4:6102846-6102865 Msa0146460:intron 40.0%
! TCTAGCACTCCTTTTATGGT+AGG + chr1_4:6103007-6103026 None:intergenic 40.0%
! GATGTCTAGCACTCCTTTTA+TGG + chr1_4:6103011-6103030 None:intergenic 40.0%
! TTCAGTAACGTTTAGGGTTC+CGG + chr1_4:6103089-6103108 None:intergenic 40.0%
TGAAGATCAAAAGCCCTTGT+GGG - chr1_4:6103105-6103124 Msa0146460:intron 40.0%
! ATTTGCCAAAGAGCACAAGA+TGG - chr1_4:6103371-6103390 Msa0146460:intron 40.0%
AGAAAAGGACCAACAACAAG+AGG + chr1_4:6103417-6103436 None:intergenic 40.0%
TGTACCAGTGATAGGAGAAA+GGG + chr1_4:6103472-6103491 None:intergenic 40.0%
ATGTACCAGTGATAGGAGAA+AGG + chr1_4:6103473-6103492 None:intergenic 40.0%
! TGTTACTTAGTAGTAGACGG+TGG + chr1_4:6103629-6103648 None:intergenic 40.0%
GCACAAATTTGCAGGAAATG+AGG - chr1_4:6103673-6103692 Msa0146460:intron 40.0%
GATCATCCAAGTGGACAAAT+TGG + chr1_4:6103724-6103743 None:intergenic 40.0%
CTTCACAAAGATCATCCAAG+TGG + chr1_4:6103733-6103752 None:intergenic 40.0%
TTGTGGGGATATTGTACTCT+GGG + chr1_4:6103859-6103878 None:intergenic 40.0%
TTTGTGGGGATATTGTACTC+TGG + chr1_4:6103860-6103879 None:intergenic 40.0%
CTTTATGTGTGTGTCTGTGA+TGG - chr1_4:6104183-6104202 Msa0146460:CDS 40.0%
! TAACGGTTTGGATGGTTGAA+AGG + chr1_4:6110908-6110927 None:intergenic 40.0%
! GATGTTTTGTCTAGGCTTTC+CGG - chr1_4:6110933-6110952 Msa0146460:CDS 40.0%
! ATGGCTTGTCATGAGACTCA+TGG - chr1_4:6100572-6100591 Msa0146460:three_prime_UTR 45.0%
AGTCCTTTGTTAGAACTGCC+AGG - chr1_4:6100844-6100863 Msa0146460:three_prime_UTR 45.0%
GAGCAAACTGTCCATTTGGA+AGG - chr1_4:6100873-6100892 Msa0146460:three_prime_UTR 45.0%
CCGTCGGGATAAATTGCTTT+GGG + chr1_4:6101361-6101380 None:intergenic 45.0%
CCCAAAGCAATTTATCCCGA+CGG - chr1_4:6101358-6101377 Msa0146460:CDS 45.0%
CCAAAGCAATTTATCCCGAC+GGG - chr1_4:6101359-6101378 Msa0146460:intron 45.0%
AAATTAGTCGTGATCCCGTC+GGG + chr1_4:6101376-6101395 None:intergenic 45.0%
AGGACAGTGAATAGGTACCT+AGG - chr1_4:6101716-6101735 Msa0146460:CDS 45.0%
ACAGTGAATAGGTACCTAGG+TGG - chr1_4:6101719-6101738 Msa0146460:intron 45.0%
! TGGCAAAGATGGTGATGACA+TGG - chr1_4:6101739-6101758 Msa0146460:intron 45.0%
! TGCCCCAAAGGCATATGTTA+AGG + chr1_4:6101970-6101989 None:intergenic 45.0%
TTGTGCACGATCTTGAGTAC+AGG - chr1_4:6102904-6102923 Msa0146460:intron 45.0%
GTTGGGAATCGAGTCTGAAA+TGG - chr1_4:6102941-6102960 Msa0146460:intron 45.0%
! CATCATGAAAGCATGCCTCA+AGG - chr1_4:6103027-6103046 Msa0146460:intron 45.0%
TTGATTTACACATCGTCCGC+CGG - chr1_4:6103067-6103086 Msa0146460:intron 45.0%
CTGAAGATCAAAAGCCCTTG+TGG - chr1_4:6103104-6103123 Msa0146460:intron 45.0%
! GGAGTGATGTTGAGTTTTGC+AGG - chr1_4:6103140-6103159 Msa0146460:intron 45.0%
GAAGTCCATCTTGTGCTCTT+TGG + chr1_4:6103379-6103398 None:intergenic 45.0%
! ATCATCCCACCTCTTGTTGT+TGG - chr1_4:6103405-6103424 Msa0146460:intron 45.0%
AAGGACCAACAACAAGAGGT+GGG + chr1_4:6103413-6103432 None:intergenic 45.0%
AAAGGACCAACAACAAGAGG+TGG + chr1_4:6103414-6103433 None:intergenic 45.0%
ATTAGGCTAGGTGGCATAGT+TGG + chr1_4:6103444-6103463 None:intergenic 45.0%
TAGGAGAAAGGGCAGTGATT+AGG + chr1_4:6103461-6103480 None:intergenic 45.0%
AGCATATGGAAGTAGAAGGG+AGG - chr1_4:6103771-6103790 Msa0146460:intron 45.0%
CTCACAAGCTCCAATTGATC+TGG + chr1_4:6103995-6104014 None:intergenic 45.0%
TGTGTGTCTGTGATGGCTTT+AGG - chr1_4:6104190-6104209 Msa0146460:CDS 45.0%
TTTGCAAGTGGGACTGCATT+TGG + chr1_4:6104311-6104330 None:intergenic 45.0%
!! CTAGGGTTTAGGTTGTTCCT+TGG + chr1_4:6104993-6105012 None:intergenic 45.0%
ATCTCAAAAGCAGCAAAGGG+AGG - chr1_4:6105135-6105154 Msa0146460:intron 45.0%
! GCAGGCAAGGTTGATTCAAA+AGG - chr1_4:6105219-6105238 Msa0146460:intron 45.0%
! GGGGTCTAAAAGCATGATTG+AGG + chr1_4:6105355-6105374 None:intergenic 45.0%
!! GATGGAGAATCTGGTCTTGA+AGG + chr1_4:6105385-6105404 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+CGG + chr1_4:6106164-6106183 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr1_4:6106164-6106183 Msa0146460:intron 45.0%
GGGAATAAAGTTTCCGGAGA+TGG - chr1_4:6106390-6106409 Msa0146460:intron 45.0%
GTGTGTGTGTGAAGAAAAGG+GGG + chr1_4:6106600-6106619 None:intergenic 45.0%
! GGAGACAATGTGTGACTTGT+GGG + chr1_4:6106932-6106951 None:intergenic 45.0%
TGGAGACAATGTGTGACTTG+TGG + chr1_4:6106933-6106952 None:intergenic 45.0%
! ATGGCTTGTCATGAGACTCA+TGG - chr1_4:6100572-6100591 Msa0146460:three_prime_UTR 45.0%
AGTCCTTTGTTAGAACTGCC+AGG - chr1_4:6100844-6100863 Msa0146460:three_prime_UTR 45.0%
GAGCAAACTGTCCATTTGGA+AGG - chr1_4:6100873-6100892 Msa0146460:three_prime_UTR 45.0%
AAATTAGTCGTGATCCCGTC+GGG + chr1_4:6101376-6101395 None:intergenic 45.0%
TTCGTTCCTTCCACGATTCA+AGG - chr1_4:6107897-6107916 Msa0146460:intron 45.0%
TCGTTCCTTCCACGATTCAA+GGG - chr1_4:6107898-6107917 Msa0146460:intron 45.0%
AGGACAGTGAATAGGTACCT+AGG - chr1_4:6101716-6101735 Msa0146460:CDS 45.0%
ACAGTGAATAGGTACCTAGG+TGG - chr1_4:6101719-6101738 Msa0146460:intron 45.0%
! TGGCAAAGATGGTGATGACA+TGG - chr1_4:6101739-6101758 Msa0146460:intron 45.0%
! TGCCCCAAAGGCATATGTTA+AGG + chr1_4:6101970-6101989 None:intergenic 45.0%
TTGTGCACGATCTTGAGTAC+AGG - chr1_4:6102904-6102923 Msa0146460:intron 45.0%
GTTGGGAATCGAGTCTGAAA+TGG - chr1_4:6102941-6102960 Msa0146460:intron 45.0%
! CATCATGAAAGCATGCCTCA+AGG - chr1_4:6103027-6103046 Msa0146460:intron 45.0%
TTGATTTACACATCGTCCGC+CGG - chr1_4:6103067-6103086 Msa0146460:intron 45.0%
CTGAAGATCAAAAGCCCTTG+TGG - chr1_4:6103104-6103123 Msa0146460:intron 45.0%
! GGAGTGATGTTGAGTTTTGC+AGG - chr1_4:6103140-6103159 Msa0146460:intron 45.0%
GAAGTCCATCTTGTGCTCTT+TGG + chr1_4:6103379-6103398 None:intergenic 45.0%
! ATCATCCCACCTCTTGTTGT+TGG - chr1_4:6103405-6103424 Msa0146460:intron 45.0%
AAGGACCAACAACAAGAGGT+GGG + chr1_4:6103413-6103432 None:intergenic 45.0%
AAAGGACCAACAACAAGAGG+TGG + chr1_4:6103414-6103433 None:intergenic 45.0%
ATTAGGCTAGGTGGCATAGT+TGG + chr1_4:6103444-6103463 None:intergenic 45.0%
TAGGAGAAAGGGCAGTGATT+AGG + chr1_4:6103461-6103480 None:intergenic 45.0%
AGCATATGGAAGTAGAAGGG+AGG - chr1_4:6103771-6103790 Msa0146460:intron 45.0%
CTCACAAGCTCCAATTGATC+TGG + chr1_4:6103995-6104014 None:intergenic 45.0%
TGTGTGTCTGTGATGGCTTT+AGG - chr1_4:6104190-6104209 Msa0146460:CDS 45.0%
TTTGCAAGTGGGACTGCATT+TGG + chr1_4:6104311-6104330 None:intergenic 45.0%
!! AAATAAATTTACATAAAATT+AGG - chr1_4:6104702-6104721 Msa0146460:intron 5.0%
!! AATAAATTTACATAAAATTA+GGG - chr1_4:6104703-6104722 Msa0146460:intron 5.0%
!! ATAAAAATAGATATTATAAT+AGG + chr1_4:6106437-6106456 None:intergenic 5.0%
!! TATAATAAAAAATAAGTAAA+AGG + chr1_4:6109207-6109226 None:intergenic 5.0%
CCCTGTGACGCAAACAGTTT+CGG + chr1_4:6100532-6100551 None:intergenic 50.0%
CCGAAACTGTTTGCGTCACA+GGG - chr1_4:6100529-6100548 Msa0146460:three_prime_UTR 50.0%
CGAAACTGTTTGCGTCACAG+GGG - chr1_4:6100530-6100549 Msa0146460:three_prime_UTR 50.0%
AATAAAAGGGACCTGGGTCG+CGG + chr1_4:6100626-6100645 None:intergenic 50.0%
! GCACCTGGCAGTTCTAACAA+AGG + chr1_4:6100850-6100869 None:intergenic 50.0%
! GACAGTTTGCTCTTTGCACC+TGG + chr1_4:6100865-6100884 None:intergenic 50.0%
TCCATTTGGAAGGCTGACCT+TGG - chr1_4:6100883-6100902 Msa0146460:exon 50.0%
ACCAAGGTCAGCCTTCCAAA+TGG + chr1_4:6100887-6100906 None:intergenic 50.0%
AAGGCTGACCTTGGTGAAGA+AGG - chr1_4:6100892-6100911 Msa0146460:exon 50.0%
!! TTTTGAGTCCAAGGACCCTG+AGG - chr1_4:6100975-6100994 Msa0146460:CDS 50.0%
CCCGTCGGGATAAATTGCTT+TGG + chr1_4:6101362-6101381 None:intergenic 50.0%
TTCCTTCCACGATTCAAGGG+AGG - chr1_4:6101413-6101432 Msa0146460:intron 50.0%
!! AAGGGAGGTGCCACAATACA+AGG - chr1_4:6101428-6101447 Msa0146460:intron 50.0%
!! AGGGAGGTGCCACAATACAA+GGG - chr1_4:6101429-6101448 Msa0146460:intron 50.0%
! AGGTGCCACAATACAAGGGA+GGG - chr1_4:6101433-6101452 Msa0146460:intron 50.0%
AGGTACCTAGGTGGCAAAGA+TGG - chr1_4:6101728-6101747 Msa0146460:intron 50.0%
CATCACCATCTTTGCCACCT+AGG + chr1_4:6101736-6101755 None:intergenic 50.0%
TGCCCTTAGGGCACAAGTTA+AGG - chr1_4:6101848-6101867 Msa0146460:intron 50.0%
! AGAGAGGATTTGCTCCCACT+GGG - chr1_4:6102799-6102818 Msa0146460:intron 50.0%
!!! TACGGACAGTTTTGGCCTTG+AGG + chr1_4:6103045-6103064 None:intergenic 50.0%
! AGTAACGTTTAGGGTTCCGG+CGG + chr1_4:6103086-6103105 None:intergenic 50.0%
CAACAGCTCTCATCCCACAA+GGG + chr1_4:6103121-6103140 None:intergenic 50.0%
TGCAGGAGAGTGAAGATGAC+TGG - chr1_4:6103157-6103176 Msa0146460:intron 50.0%
! GAGAGTGAAGATGACTGGCT+GGG - chr1_4:6103162-6103181 Msa0146460:intron 50.0%
GAAAGGGCAGTGATTAGGCT+AGG + chr1_4:6103456-6103475 None:intergenic 50.0%
ACTGCCCTTTCTCCTATCAC+TGG - chr1_4:6103465-6103484 Msa0146460:intron 50.0%
GCAAGGCCAATTTGTCCACT+TGG - chr1_4:6103715-6103734 Msa0146460:intron 50.0%
ATTACTGAGGCGGTTGCACT+AGG + chr1_4:6104231-6104250 None:intergenic 50.0%
GGCAATCACGCCTATTCTCA+TGG - chr1_4:6104504-6104523 Msa0146460:intron 50.0%
CCAATGTCGAGAGCTTCGTA+CGG + chr1_4:6105200-6105219 None:intergenic 50.0%
! GTTGATTCAAAAGGGGCGCA+TGG - chr1_4:6105228-6105247 Msa0146460:intron 50.0%
ACCAACTGAGCTAAGCTCAC+GGG + chr1_4:6106163-6106182 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr1_4:6106163-6106182 Msa0146460:intron 50.0%
! TTGTGGAGAAGTGGAGTGTC+CGG + chr1_4:6106227-6106246 None:intergenic 50.0%
! GGCTTGGCTTGAAGATGGAA+TGG + chr1_4:6106953-6106972 None:intergenic 50.0%
!! TGGTTGGCTTGGCTTGAAGA+TGG + chr1_4:6106958-6106977 None:intergenic 50.0%
CCCTGTGACGCAAACAGTTT+CGG + chr1_4:6100532-6100551 None:intergenic 50.0%
CCGAAACTGTTTGCGTCACA+GGG - chr1_4:6100529-6100548 Msa0146460:three_prime_UTR 50.0%
CGAAACTGTTTGCGTCACAG+GGG - chr1_4:6100530-6100549 Msa0146460:three_prime_UTR 50.0%
AAAAAAAGGGACCTGGGTCG+CGG + chr1_4:6107138-6107157 None:intergenic 50.0%
! GCACCTGGCAGTTCTAACAA+AGG + chr1_4:6100850-6100869 None:intergenic 50.0%
! GACAGTTTGCTCTTTGCACC+TGG + chr1_4:6100865-6100884 None:intergenic 50.0%
TCCATTTGGAAGGCTGACCT+TGG - chr1_4:6100883-6100902 Msa0146460:exon 50.0%
ACCAAGGTCAGCCTTCCAAA+TGG + chr1_4:6100887-6100906 None:intergenic 50.0%
AAGGCTGACCTTGGTGAAGA+AGG - chr1_4:6100892-6100911 Msa0146460:exon 50.0%
!! TTTTGAGTCCAAGGACCCTG+AGG - chr1_4:6100975-6100994 Msa0146460:CDS 50.0%
CCGTCGGGATAAATTGCTTC+GGG + chr1_4:6107849-6107868 None:intergenic 50.0%
CCCGAAGCAATTTATCCCGA+CGG - chr1_4:6107846-6107865 Msa0146460:intron 50.0%
CCCGTCGGGATAAATTGCTT+CGG + chr1_4:6101362-6101381 None:intergenic 50.0%
CCGAAGCAATTTATCCCGAC+GGG - chr1_4:6107847-6107866 Msa0146460:intron 50.0%
TTCCTTCCACGATTCAAGGG+AGG - chr1_4:6101413-6101432 Msa0146460:intron 50.0%
!! AAGGGAGGTGCCACAATACA+AGG - chr1_4:6101428-6101447 Msa0146460:intron 50.0%
!! AGGGAGGTGCCACAATACAA+GGG - chr1_4:6101429-6101448 Msa0146460:intron 50.0%
! AGGTGCCACAATACAAGGGA+GGG - chr1_4:6101433-6101452 Msa0146460:intron 50.0%
AGGTACCTAGGTGGCAAAGA+TGG - chr1_4:6101728-6101747 Msa0146460:intron 50.0%
CATCACCATCTTTGCCACCT+AGG + chr1_4:6101736-6101755 None:intergenic 50.0%
TGCCCTTAGGGCACAAGTTA+AGG - chr1_4:6101848-6101867 Msa0146460:intron 50.0%
GCAAACACTTTCCACGAGAG+AGG - chr1_4:6109270-6109289 Msa0146460:intron 50.0%
!!! TACGGACAGTTTTGGCCTTG+AGG + chr1_4:6103045-6103064 None:intergenic 50.0%
! AGTAACGTTTAGGGTTCCGG+CGG + chr1_4:6103086-6103105 None:intergenic 50.0%
CAACAGCTCTCATCCCACAA+GGG + chr1_4:6103121-6103140 None:intergenic 50.0%
TGCAGGAGAGTGAAGATGAC+TGG - chr1_4:6103157-6103176 Msa0146460:intron 50.0%
! GAGAGTGAAGATGACTGGCT+GGG - chr1_4:6103162-6103181 Msa0146460:intron 50.0%
GAAAGGGCAGTGATTAGGCT+AGG + chr1_4:6103456-6103475 None:intergenic 50.0%
ACTGCCCTTTCTCCTATCAC+TGG - chr1_4:6103465-6103484 Msa0146460:intron 50.0%
GCAAGGCCAATTTGTCCACT+TGG - chr1_4:6103715-6103734 Msa0146460:intron 50.0%
ATTACTGAGGCGGTTGCACT+AGG + chr1_4:6104231-6104250 None:intergenic 50.0%
! GCTTCAATAGGTTGAACCCG+TGG - chr1_4:6110989-6111008 Msa0146460:CDS 50.0%
GCCGAAACTGTTTGCGTCAC+AGG - chr1_4:6100528-6100547 Msa0146460:three_prime_UTR 55.0%
TGTTTGCGTCACAGGGGCTT+CGG - chr1_4:6100536-6100555 Msa0146460:three_prime_UTR 55.0%
! ACAGGGGCTTCGGGTTTCAT+CGG - chr1_4:6100546-6100565 Msa0146460:three_prime_UTR 55.0%
! CTTCGGGTTTCATCGGGTCA+TGG - chr1_4:6100553-6100572 Msa0146460:three_prime_UTR 55.0%
GTCATGAGACTCATGGAGCG+CGG - chr1_4:6100579-6100598 Msa0146460:three_prime_UTR 55.0%
ACTCATGGAGCGCGGTTACA+TGG - chr1_4:6100587-6100606 Msa0146460:three_prime_UTR 55.0%
TATGGGTACCTCAGGGTCCT+TGG + chr1_4:6100986-6101005 None:intergenic 55.0%
CACCTCCCTTGAATCGTGGA+AGG + chr1_4:6101418-6101437 None:intergenic 55.0%
! GAGGTGCCACAATACAAGGG+AGG - chr1_4:6101432-6101451 Msa0146460:intron 55.0%
GACTGCCCTCCCTTGTATTG+TGG + chr1_4:6101441-6101460 None:intergenic 55.0%
GCAAACACTCTCCACGAGAG+AGG - chr1_4:6102783-6102802 Msa0146460:intron 55.0%
TGGGAGCAAATCCTCTCTCG+TGG + chr1_4:6102797-6102816 None:intergenic 55.0%
! GAGAGAGGATTTGCTCCCAC+TGG - chr1_4:6102798-6102817 Msa0146460:intron 55.0%
CCAACAGCTCTCATCCCACA+AGG + chr1_4:6103122-6103141 None:intergenic 55.0%
CCTTGTGGGATGAGAGCTGT+TGG - chr1_4:6103119-6103138 Msa0146460:intron 55.0%
GGAGAGTGAAGATGACTGGC+TGG - chr1_4:6103161-6103180 Msa0146460:intron 55.0%
CACTTGCGGAGCAAGAAGCA+TGG - chr1_4:6103346-6103365 Msa0146460:intron 55.0%
AGGGCAGTGATTAGGCTAGG+TGG + chr1_4:6103453-6103472 None:intergenic 55.0%
!! AAGCAGCAAAGGGAGGCACT+AGG - chr1_4:6105142-6105161 Msa0146460:intron 55.0%
!! AGCAGCAAAGGGAGGCACTA+GGG - chr1_4:6105143-6105162 Msa0146460:intron 55.0%
CCGTACGAAGCTCTCGACAT+TGG - chr1_4:6105197-6105216 Msa0146460:intron 55.0%
ACGAAGCTCTCGACATTGGC+AGG - chr1_4:6105201-6105220 Msa0146460:intron 55.0%
CCAACTGAGCTAAGCTCACG+GGG + chr1_4:6106162-6106181 None:intergenic 55.0%
! TGTGGAGAAGTGGAGTGTCC+GGG + chr1_4:6106226-6106245 None:intergenic 55.0%
GACGCAAACAGTTTCGGCCA+TGG + chr1_4:6107038-6107057 None:intergenic 55.0%
GCCGAAACTGTTTGCGTCAC+AGG - chr1_4:6100528-6100547 Msa0146460:three_prime_UTR 55.0%
TGTTTGCGTCACAGGGGCTT+CGG - chr1_4:6100536-6100555 Msa0146460:three_prime_UTR 55.0%
! ACAGGGGCTTCGGGTTTCAT+CGG - chr1_4:6100546-6100565 Msa0146460:three_prime_UTR 55.0%
! CTTCGGGTTTCATCGGGTCA+TGG - chr1_4:6100553-6100572 Msa0146460:three_prime_UTR 55.0%
GTCATGAGACTCATGGAGCG+CGG - chr1_4:6100579-6100598 Msa0146460:three_prime_UTR 55.0%
ACTCATGGAGCGCGGTTACA+TGG - chr1_4:6100587-6100606 Msa0146460:three_prime_UTR 55.0%
TATGGGTACCTCAGGGTCCT+TGG + chr1_4:6100986-6101005 None:intergenic 55.0%
CACCTCCCTTGAATCGTGGA+AGG + chr1_4:6101418-6101437 None:intergenic 55.0%
! GAGGTGCCACAATACAAGGG+AGG - chr1_4:6101432-6101451 Msa0146460:intron 55.0%
GTCTGCCCTCCCTTGTATTG+TGG + chr1_4:6107929-6107948 None:intergenic 55.0%
TGGGAGCAAATCCTCTCTCG+TGG + chr1_4:6102797-6102816 None:intergenic 55.0%
! GAGAGAGGATTTGCTCCCAC+CGG - chr1_4:6102798-6102817 Msa0146460:intron 55.0%
! AGAGAGGATTTGCTCCCACC+GGG - chr1_4:6109286-6109305 Msa0146460:intron 55.0%
CCAACAGCTCTCATCCCACA+AGG + chr1_4:6103122-6103141 None:intergenic 55.0%
CCTTGTGGGATGAGAGCTGT+TGG - chr1_4:6103119-6103138 Msa0146460:intron 55.0%
GGAGAGTGAAGATGACTGGC+TGG - chr1_4:6103161-6103180 Msa0146460:intron 55.0%
CACTTGCGGAGCAAGAAGCA+TGG - chr1_4:6103346-6103365 Msa0146460:intron 55.0%
AGGGCAGTGATTAGGCTAGG+TGG + chr1_4:6103453-6103472 None:intergenic 55.0%
GACGCAAACAGTTTCGGCCG+TGG + chr1_4:6100526-6100545 None:intergenic 60.0%
GTTTGCGTCACAGGGGCTTC+GGG - chr1_4:6100537-6100556 Msa0146460:three_prime_UTR 60.0%
! CAGGGGCTTCGGGTTTCATC+GGG - chr1_4:6100547-6100566 Msa0146460:three_prime_UTR 60.0%
GTGGCACCTCCCTTGAATCG+TGG + chr1_4:6101422-6101441 None:intergenic 60.0%
AAAGCAGCTGGAACCGCGCA+CGG - chr1_4:6105077-6105096 Msa0146460:intron 60.0%
TCGCGCACAGTCATGCGTGT+GGG - chr1_4:6105166-6105185 Msa0146460:intron 60.0%
CAGTCATGCGTGTGGGAGCA+CGG - chr1_4:6105173-6105192 Msa0146460:intron 60.0%
GCTCTCGACATTGGCAGGCA+AGG - chr1_4:6105206-6105225 Msa0146460:intron 60.0%
CACGATCGTGCGCGACAAGA+TGG - chr1_4:6105267-6105286 Msa0146460:intron 60.0%
CCCCGTGAGCTTAGCTCAGT+TGG - chr1_4:6106159-6106178 Msa0146460:intron 60.0%
AGGGGCTGAGATTCGAACCC+CGG - chr1_4:6106205-6106224 Msa0146460:intron 60.0%
! GTGGAGAAGTGGAGTGTCCG+GGG + chr1_4:6106225-6106244 None:intergenic 60.0%
GTTTGCGTCACAGGGGCTTC+GGG - chr1_4:6100537-6100556 Msa0146460:three_prime_UTR 60.0%
! CAGGGGCTTCGGGTTTCATC+GGG - chr1_4:6100547-6100566 Msa0146460:three_prime_UTR 60.0%
GTGGCACCTCCCTTGAATCG+TGG + chr1_4:6101422-6101441 None:intergenic 60.0%
CTTGCAAGCACGACCGTGCG+CGG + chr1_4:6105093-6105112 None:intergenic 65.0%
GTCGCGCACAGTCATGCGTG+TGG - chr1_4:6105165-6105184 Msa0146460:intron 65.0%
CGAGCAACAGTCCGCGACCC+AGG - chr1_4:6100612-6100631 Msa0146460:three_prime_UTR 70.0%
CGCGCACGGTCGTGCTTGCA+AGG - chr1_4:6105091-6105110 Msa0146460:intron 70.0%
CGAGCAACAGTCCGCGACCC+AGG - chr1_4:6100612-6100631 Msa0146460:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6100449 6111102 6100449 ID=Msa0146460;Name=Msa0146460
chr1_4 mRNA 6100449 6111102 6100449 ID=Msa0146460-mRNA-1;Parent=Msa0146460;Name=Msa0146460-mRNA-1;_AED=0.21;_eAED=0.21;_QI=67|0.90|0.83|1|0.90|0.83|12|450|662
chr1_4 exon 6100449 6101085 6100449 ID=Msa0146460-mRNA-1:exon:2690;Parent=Msa0146460-mRNA-1
chr1_4 exon 6101185 6101377 6101185 ID=Msa0146460-mRNA-1:exon:2689;Parent=Msa0146460-mRNA-1
chr1_4 exon 6101578 6101737 6101578 ID=Msa0146460-mRNA-1:exon:2688;Parent=Msa0146460-mRNA-1
chr1_4 exon 6101881 6102075 6101881 ID=Msa0146460-mRNA-1:exon:2687;Parent=Msa0146460-mRNA-1
chr1_4 exon 6104044 6104213 6104044 ID=Msa0146460-mRNA-1:exon:2686;Parent=Msa0146460-mRNA-1
chr1_4 exon 6104406 6104489 6104406 ID=Msa0146460-mRNA-1:exon:2685;Parent=Msa0146460-mRNA-1
chr1_4 exon 6107409 6107572 6107409 ID=Msa0146460-mRNA-1:exon:2684;Parent=Msa0146460-mRNA-1
chr1_4 exon 6107672 6107864 6107672 ID=Msa0146460-mRNA-1:exon:2683;Parent=Msa0146460-mRNA-1
chr1_4 exon 6108065 6108224 6108065 ID=Msa0146460-mRNA-1:exon:2682;Parent=Msa0146460-mRNA-1
chr1_4 exon 6108368 6108562 6108368 ID=Msa0146460-mRNA-1:exon:2681;Parent=Msa0146460-mRNA-1
chr1_4 exon 6110555 6110724 6110555 ID=Msa0146460-mRNA-1:exon:2680;Parent=Msa0146460-mRNA-1
chr1_4 exon 6110918 6111102 6110918 ID=Msa0146460-mRNA-1:exon:2679;Parent=Msa0146460-mRNA-1
chr1_4 five_prime_UTR 6111036 6111102 6111036 ID=Msa0146460-mRNA-1:five_prime_utr;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6110918 6111035 6110918 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6110555 6110724 6110555 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6108368 6108562 6108368 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6108065 6108224 6108065 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6107672 6107864 6107672 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6107409 6107572 6107409 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6104406 6104489 6104406 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6104044 6104213 6104044 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6101881 6102075 6101881 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6101578 6101737 6101578 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6101185 6101377 6101185 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 CDS 6100899 6101085 6100899 ID=Msa0146460-mRNA-1:cds;Parent=Msa0146460-mRNA-1
chr1_4 three_prime_UTR 6100449 6100898 6100449 ID=Msa0146460-mRNA-1:three_prime_utr;Parent=Msa0146460-mRNA-1
Gene Sequence

>Msa0146460

ATGGGTTCCACGGCCGAAACTGTTTGCGTCACAGGGGCTTCGGGTTTCATCGGGTCATGGCTTGTCATGAGACTCATGGAGCGCGGTTACATGGTTCGAGCAACAGTCCGCGACCCAGAAAACTTGAAGAAGGTGAGTCCTTTGTTAGAACTGCCAGGTGCAAAGAGCAAACTGTCCATTTGGAAGGCTGACCTTGGTGAAGAAGGTAGTTTTGATGAAGCAATTAAAGGGTGTACTGGAGTTTTTCATGTGGCTACACCTATGGATTTTGAGTCCAAGGACCCTGAGAATGAAATGATCAAGCCTACCATAAAAGGAGTGCTAGACATCATGAAAGCATGCCTCAAGGCCAAAACTGTCCGTAGATTGATTTACACATCGTCCGCCGGAACCCTAAACGTTACTGAAGATCAAAAGCCCTTGTGGGATGAGAGCTGTTGGAGTGATGTTGAGTTTTGCAGGAGAGTGAAGATGACTGGCTGGATGTATTTTGTTTCTAAGACACTTGCGGAGCAAGAAGCATGGAAATTTGCCAAAGAGCACAAGATGGACTTCATCACAATCATCCCACCTCTTGTTGTTGGTCCTTTTCTTATTCCAACTATGCCACCTAGCCTAATCACTGCCCTTTCTCCTATCACTGGAAATGAGGCTCATTATTCGATTATAAAGCAAGGCCAATTTGTCCACTTGGATGATCTTTGTGAAGCACACATATTCTTGTTTGAGCATATGGAAGTAGAAGGGAGGTATCTATGTAGTGCATATGAAGCTAATATTCATGACATTGCAAAATTAATTAATACAAAATACCCAGAGTACAATATCCCCACAAAGTTCAAGAATATTCCAGATCAATTGGAGCTTGTGAGATTTTCATCAAAGAAGATCAAAGACTTGGGATTTGAATTCAAATACAGCTTGGAGGATATGTACACTGAAGCAATTGATACATGCAGAGAAAAAGGGCTTCTTCCTGAATTTGTTAAAGCACCAATAAGGGCTTCGGGTTTCATCGGGTCATGGCTTGTCATGAGACTCATGGAGCGCGGTTACATGGTTCGAGCAACAGTCCGCGACCCAGAAAACTTGAAGAAGGTGAGTCCTTTGTTAGAACTGCCAGGTGCAAAGAGCAAACTGTCCATTTGGAAGGCTGACCTTGGTGAAGAAGGTAGTTTTGATGAAGCAATTAAAGGGTGTACTGGAGTTTTTCATGTGGCTACACCTATGGATTTTGAGTCCAAGGACCCTGAGAATGAAATGATCAAGCCTACCATAAAAGGAGTGCTAGACATCATGAAAGCATGCCTCAAGGCCAAAACTGTCCGTAGATTGATTTACACATCGTCCGCCGGAACCCTAAACGTTACTGAAGATCAAAAGCCCTTGTGGGATGAGAGCTGTTGGAGTGATGTTGAGTTTTGCAGGAGAGTGAAGATGACTGGCTGGATGTATTTTGTTTCTAAGACACTTGCGGAGCAAGAAGCATGGAAATTTGCCAAAGAGCACAAGATGGACTTCATCACAATCATCCCACCTCTTGTTGTTGGTCCTTTTCTTATTCCAACTATGCCACCTAGCCTAATCACTGCCCTTTCTCCTATCACTGGAAATGAGGCTCATTATTCGATTATAAAGCAAGGCCAATTTGTCCACTTGGATGATCTTTGTGAAGCACACATATTCTTGTTTGAGCATATGGAAGTAGAAGGGAGGTATCTATGTAGTGCATATGAAGCTAATATTCATGACATTGCAAAATTAATTAATACAAAATACCCAGAGTACAATATCCCCACAAAGTTCAAGAATATTCCAGATCAATTGGAGCTTGTGAGATTTTCATCAAAGAAGATCAAAGACTTGGGATTTGAATTCAAATACAGCTTGGAGGATATGTACACTGAAGCAATTGATACATGCAGAGAAAAAGGGCTTCTTCCTGAATTTGTTAAAGCACCAATAAGTAATGGTGTCACACATAAATAA
Protein sequence

>Msa0146460

MGSTAETVCVTGASGFIGSWLVMRLMERGYMVRATVRDPENLKKVSPLLELPGAKSKLSIWKADLGEEGSFDEAIKGCTGVFHVATPMDFESKDPENEMIKPTIKGVLDIMKACLKAKTVRRLIYTSSAGTLNVTEDQKPLWDESCWSDVEFCRRVKMTGWMYFVSKTLAEQEAWKFAKEHKMDFITIIPPLVVGPFLIPTMPPSLITALSPITGNEAHYSIIKQGQFVHLDDLCEAHIFLFEHMEVEGRYLCSAYEANIHDIAKLINTKYPEYNIPTKFKNIPDQLELVRFSSKKIKDLGFEFKYSLEDMYTEAIDTCREKGLLPEFVKAPIRASGFIGSWLVMRLMERGYMVRATVRDPENLKKVSPLLELPGAKSKLSIWKADLGEEGSFDEAIKGCTGVFHVATPMDFESKDPENEMIKPTIKGVLDIMKACLKAKTVRRLIYTSSAGTLNVTEDQKPLWDESCWSDVEFCRRVKMTGWMYFVSKTLAEQEAWKFAKEHKMDFITIIPPLVVGPFLIPTMPPSLITALSPITGNEAHYSIIKQGQFVHLDDLCEAHIFLFEHMEVEGRYLCSAYEANIHDIAKLINTKYPEYNIPTKFKNIPDQLELVRFSSKKIKDLGFEFKYSLEDMYTEAIDTCREKGLLPEFVKAPISNGVTHK*