Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700850 | XP_003629721.2 | 88.491 | 530 | 36 | 1 | 4 | 508 | 1 | 530 | 0.0 | 971 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700850 | sp|Q8W496|PTC52_ARATH | 52.566 | 565 | 199 | 11 | 1 | 504 | 1 | 557 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700850 | A0A396GSW2 | 88.491 | 530 | 36 | 1 | 4 | 508 | 1 | 530 | 0.0 | 971 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003490 | Msa0700850 | 0.807575 | 4.727539e-50 | -8.615850e-47 |
| Msa0018220 | Msa0700850 | 0.801260 | 9.794256e-49 | -8.615850e-47 |
| Msa0053680 | Msa0700850 | 0.810202 | 1.295758e-50 | -8.615850e-47 |
| Msa0097050 | Msa0700850 | 0.802906 | 4.491615e-49 | -8.615850e-47 |
| Msa0603680 | Msa0700850 | 0.833178 | 6.192371e-56 | -8.615850e-47 |
| Msa0617650 | Msa0700850 | 0.837067 | 6.467476e-57 | -8.615850e-47 |
| Msa0634270 | Msa0700850 | 0.800319 | 1.524181e-48 | -8.615850e-47 |
| Msa0640390 | Msa0700850 | 0.857845 | 1.236750e-62 | -8.615850e-47 |
| Msa0641620 | Msa0700850 | 0.800831 | 1.198321e-48 | -8.615850e-47 |
| Msa0648180 | Msa0700850 | 0.802637 | 5.104433e-49 | -8.615850e-47 |
| Msa0656590 | Msa0700850 | 0.812501 | 4.106711e-51 | -8.615850e-47 |
| Msa0656950 | Msa0700850 | 0.850222 | 1.952063e-60 | -8.615850e-47 |
| Msa0678890 | Msa0700850 | 0.812703 | 3.710874e-51 | -8.615850e-47 |
| Msa0700610 | Msa0700850 | 0.853461 | 2.353784e-61 | -8.615850e-47 |
| Msa0700850 | Msa0700910 | 0.908647 | 1.359737e-81 | -8.615850e-47 |
| Msa0700850 | Msa0722940 | 0.843923 | 1.039248e-58 | -8.615850e-47 |
| Msa0700850 | Msa0723150 | 0.844186 | 8.838053e-59 | -8.615850e-47 |
| Msa0700850 | Msa0830410 | 0.808677 | 2.754218e-50 | -8.615850e-47 |
| Msa0700850 | Msa0843290 | 0.833578 | 4.920213e-56 | -8.615850e-47 |
| Msa0700850 | Msa0886880 | 0.801086 | 1.062632e-48 | -8.615850e-47 |
| Msa0700850 | Msa1129920 | 0.857995 | 1.115825e-62 | -8.615850e-47 |
| Msa0700850 | Msa1143380 | 0.841802 | 3.810358e-58 | -8.615850e-47 |
| Msa0700850 | Msa1178470 | 0.821151 | 4.702896e-53 | -8.615850e-47 |
| Msa0700850 | Msa1232860 | 0.842370 | 2.695356e-58 | -8.615850e-47 |
| Msa0700850 | Msa1275290 | 0.821237 | 4.491810e-53 | -8.615850e-47 |
| Msa0700850 | Msa1330240 | 0.801691 | 7.990125e-49 | -8.615850e-47 |
| Msa0700850 | Msa1341340 | 0.825505 | 4.519043e-54 | -8.615850e-47 |
| Msa0700850 | Msa1385600 | 0.805164 | 1.523654e-49 | -8.615850e-47 |
| Msa0700850 | Msa1417650 | 0.816407 | 5.618635e-52 | -8.615850e-47 |
| Msa0700850 | Msa1421810 | 0.857204 | 1.914296e-62 | -8.615850e-47 |
| Msa0700850 | Msa1435050 | 0.835169 | 1.962627e-56 | -8.615850e-47 |
| Msa0700850 | Msa1437690 | 0.805122 | 1.554785e-49 | -8.615850e-47 |
| Msa0700850 | Msa1439680 | 0.823751 | 1.170247e-53 | -8.615850e-47 |
| Msa0146460 | Msa0700850 | 0.805981 | 1.026848e-49 | -8.615850e-47 |
| Msa0184070 | Msa0700850 | 0.857067 | 2.101016e-62 | -8.615850e-47 |
| Msa0219660 | Msa0700850 | 0.813971 | 1.953839e-51 | -8.615850e-47 |
| Msa0382290 | Msa0700850 | 0.829102 | 6.211403e-55 | -8.615850e-47 |
| Msa0418480 | Msa0700850 | 0.852425 | 4.656382e-61 | -8.615850e-47 |
| Msa0431800 | Msa0700850 | 0.823686 | 1.212124e-53 | -8.615850e-47 |
| Msa0450780 | Msa0700850 | 0.805739 | 1.154239e-49 | -8.615850e-47 |
| Msa0465860 | Msa0700850 | 0.851439 | 8.868152e-61 | -8.615850e-47 |
| Msa0260960 | Msa0700850 | 0.822280 | 2.577856e-53 | -8.615850e-47 |
| Msa0260970 | Msa0700850 | 0.828826 | 7.244392e-55 | -8.615850e-47 |
| Msa0290950 | Msa0700850 | 0.823386 | 1.424599e-53 | -8.615850e-47 |
| Msa0290970 | Msa0700850 | 0.805747 | 1.149626e-49 | -8.615850e-47 |
| Msa0315480 | Msa0700850 | 0.800977 | 1.118582e-48 | -8.615850e-47 |
| Msa0326270 | Msa0700850 | 0.812100 | 5.023233e-51 | -8.615850e-47 |
| Msa0358230 | Msa0700850 | 0.848506 | 5.867441e-60 | -8.615850e-47 |
| Msa0510230 | Msa0700850 | 0.848827 | 4.783463e-60 | -8.615850e-47 |
| Msa0511480 | Msa0700850 | 0.800624 | 1.321018e-48 | -8.615850e-47 |
| Msa0520730 | Msa0700850 | 0.842056 | 3.264695e-58 | -8.615850e-47 |
| Msa0524210 | Msa0700850 | 0.801704 | 7.942224e-49 | -8.615850e-47 |
| Msa0543850 | Msa0700850 | 0.832563 | 8.804384e-56 | -8.615850e-47 |
| Msa0547050 | Msa0700850 | 0.800510 | 1.393094e-48 | -8.615850e-47 |
| Msa0558820 | Msa0700850 | 0.869997 | 2.034824e-66 | -8.615850e-47 |
| Msa0564150 | Msa0700850 | 0.827382 | 1.613913e-54 | -8.615850e-47 |
| Msa0601110 | Msa0700850 | 0.804446 | 2.151854e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700850 | MtrunA17_Chr8g0378671 | 88.491 | 530 | 36 | 1 | 4 | 508 | 1 | 530 | 0.0 | 971 |
| Msa0700850 | MtrunA17_Chr8g0378721 | 84.091 | 528 | 56 | 3 | 4 | 504 | 1 | 527 | 0.0 | 917 |
| Msa0700850 | MtrunA17_Chr8g0378701 | 81.865 | 386 | 42 | 3 | 1 | 359 | 12 | 396 | 0.0 | 649 |
| Msa0700850 | MtrunA17_Chr8g0378691 | 84.564 | 149 | 23 | 0 | 359 | 507 | 9 | 157 | 2.94e-89 | 271 |
| Msa0700850 | MtrunA17_Chr4g0027961 | 31.924 | 473 | 252 | 15 | 81 | 502 | 89 | 542 | 2.72e-67 | 226 |
| Msa0700850 | MtrunA17_Chr3g0136771 | 25.053 | 471 | 257 | 13 | 44 | 442 | 46 | 492 | 4.11e-35 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700850 | AT4G25650.1 | 54.512 | 543 | 199 | 10 | 1 | 504 | 1 | 534 | 0.0 | 590 |
| Msa0700850 | AT4G25650.2 | 52.566 | 565 | 199 | 11 | 1 | 504 | 1 | 557 | 0.0 | 582 |
| Msa0700850 | AT3G44880.1 | 32.505 | 523 | 260 | 20 | 46 | 503 | 39 | 533 | 6.12e-70 | 233 |
| Msa0700850 | AT2G24820.1 | 25.882 | 510 | 272 | 16 | 4 | 442 | 5 | 479 | 4.51e-38 | 147 |
Find 125 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAACCTGTTTCAACTTC+TGG | 0.199220 | 4_4:+72022807 | None:intergenic |
| TCCATCATTTGCTAGCTTAA+TGG | 0.218538 | 4_4:-72022051 | Msa0700850:CDS |
| TTGAATCGAGGATCAGTATT+TGG | 0.226374 | 4_4:+72022122 | None:intergenic |
| ACAATTGTTAATTCATATAT+TGG | 0.227253 | 4_4:-72019529 | Msa0700850:three_prime_UTR |
| TGGTGCTTTCCGAGAAATTT+TGG | 0.234178 | 4_4:-72021055 | Msa0700850:CDS |
| CCATCATTTGCTAGCTTAAT+GGG | 0.262213 | 4_4:-72022050 | Msa0700850:CDS |
| AGAATAATATCTTGTGGTTT+TGG | 0.262792 | 4_4:-72022145 | Msa0700850:CDS |
| CACCACATTGAGGCTCTTAT+AGG | 0.282231 | 4_4:+72020008 | None:intergenic |
| ATCATATCAGTTGCTTCAAT+TGG | 0.287082 | 4_4:-72019970 | Msa0700850:CDS |
| AATGATGGATCATCAATTTC+TGG | 0.296431 | 4_4:+72022065 | None:intergenic |
| TGGATGCTGGTCAAGAAAAT+TGG | 0.301039 | 4_4:-72020705 | Msa0700850:CDS |
| CAATGGTTTCACTGCAAATC+AGG | 0.316257 | 4_4:-72021313 | Msa0700850:CDS |
| GGAAACAGAGATATTCCTTA+TGG | 0.335690 | 4_4:-72022029 | Msa0700850:CDS |
| TGGGAATTGATGTTGTTATA+TGG | 0.344667 | 4_4:-72022701 | Msa0700850:CDS |
| GAAGTGTTCCCACGGATTAA+TGG | 0.348211 | 4_4:+72022909 | None:intergenic |
| CTACTACTAGAATCTGTTAA+TGG | 0.354981 | 4_4:+72022852 | None:intergenic |
| GTGGAACCTGTGAAGGTTCT+TGG | 0.358537 | 4_4:-72019568 | Msa0700850:three_prime_UTR |
| ACAGAAGATGCAAGTTCATC+TGG | 0.362015 | 4_4:+72021237 | None:intergenic |
| ACCTCCTAGAGAACAGCTTA+TGG | 0.373079 | 4_4:-72020557 | Msa0700850:CDS |
| TGCCTTTGTTGGCACAAAAC+AGG | 0.379469 | 4_4:+72020675 | None:intergenic |
| AAGGCAGATGCTCTTGTGAT+TGG | 0.399532 | 4_4:-72020658 | Msa0700850:CDS |
| CTGGTTCATCATCCACTTCA+AGG | 0.399812 | 4_4:+72022826 | None:intergenic |
| TGCATCTTCTGTTGAAACTA+AGG | 0.404424 | 4_4:-72021226 | Msa0700850:intron |
| GTTAATCCATAGTGTGCATA+TGG | 0.414358 | 4_4:+72021500 | None:intergenic |
| CCCATTAAGCTAGCAAATGA+TGG | 0.416361 | 4_4:+72022050 | None:intergenic |
| ACAAGAGCATCTGCCTTTGT+TGG | 0.416937 | 4_4:+72020664 | None:intergenic |
| ATATTATTCTGCACAATGCT+TGG | 0.417838 | 4_4:+72022158 | None:intergenic |
| ATTGAAGAGTTAGATATCAA+TGG | 0.427054 | 4_4:-72021330 | Msa0700850:CDS |
| CATCAATTTCTGGTATGAAT+GGG | 0.432152 | 4_4:+72022075 | None:intergenic |
| TCATCAATTTCTGGTATGAA+TGG | 0.435029 | 4_4:+72022074 | None:intergenic |
| CTGGTAATAGTAGACTGATT+TGG | 0.436210 | 4_4:-72021075 | Msa0700850:CDS |
| TGAAGGAAGGATTGATCAAT+GGG | 0.437126 | 4_4:-72022610 | Msa0700850:CDS |
| ACCCACAGTCCAAAATTTCT+CGG | 0.439221 | 4_4:+72021046 | None:intergenic |
| AAGAAATTCTATAGTTGTGC+TGG | 0.439574 | 4_4:-72019905 | Msa0700850:CDS |
| CATGTTCCATATGCACACTA+TGG | 0.450961 | 4_4:-72021506 | Msa0700850:CDS |
| GATTGGAGAGGAAAATATAG+TGG | 0.451279 | 4_4:-72020595 | Msa0700850:CDS |
| ATTTGTATTCCTGTGAGTCC+TGG | 0.453411 | 4_4:-72021094 | Msa0700850:CDS |
| CAATATGTGATCTTGACAAA+AGG | 0.457440 | 4_4:-72022746 | Msa0700850:CDS |
| GATGAACCAGAAGTTGAAAC+AGG | 0.463226 | 4_4:-72022813 | Msa0700850:CDS |
| TCATATCAGTTGCTTCAATT+GGG | 0.473164 | 4_4:-72019969 | Msa0700850:CDS |
| TAATGCAGAAATCATCCGTT+CGG | 0.475564 | 4_4:-72021138 | Msa0700850:intron |
| GAAACAGAGATATTCCTTAT+GGG | 0.476962 | 4_4:-72022028 | Msa0700850:intron |
| GATTGTTGCCGCAATAAAGC+AGG | 0.480412 | 4_4:-72019947 | Msa0700850:CDS |
| CTGAAGGAAGGATTGATCAA+TGG | 0.483984 | 4_4:-72022611 | Msa0700850:CDS |
| ATGCAGGTGATCAAGTTGAT+TGG | 0.490731 | 4_4:-72020612 | Msa0700850:CDS |
| AATAATGCTGATAGAGAAGG+AGG | 0.493895 | 4_4:-72021372 | Msa0700850:CDS |
| TTTGGAACATTTGTCTGTTG+TGG | 0.503859 | 4_4:-72019587 | Msa0700850:three_prime_UTR |
| ATTTCTCCAAGAACCTTCAC+AGG | 0.510553 | 4_4:+72019562 | None:intergenic |
| GTCTGTTGTGGAACCTGTGA+AGG | 0.511260 | 4_4:-72019575 | Msa0700850:three_prime_UTR |
| ATTGGAGAGGAAAATATAGT+GGG | 0.516950 | 4_4:-72020594 | Msa0700850:CDS |
| AAGGGCACCTCATGCTAAGA+AGG | 0.517511 | 4_4:-72022727 | Msa0700850:CDS |
| AAATTAAAATCATACCCATA+AGG | 0.517619 | 4_4:+72022014 | None:intergenic |
| TATAAATAAAAGATGCTTGG+TGG | 0.517953 | 4_4:+72021267 | None:intergenic |
| CTATATAAATAAAAGATGCT+TGG | 0.518931 | 4_4:+72021264 | None:intergenic |
| AACTCTTGCAATTCACCGTA+TGG | 0.523296 | 4_4:+72020040 | None:intergenic |
| AATATGTGATCTTGACAAAA+GGG | 0.523473 | 4_4:-72022745 | Msa0700850:CDS |
| AAATGGTTAAAGAAGTATGC+AGG | 0.524010 | 4_4:-72020628 | Msa0700850:CDS |
| CTAGAATCTGTTAATGGAGA+AGG | 0.526969 | 4_4:+72022858 | None:intergenic |
| AGATCACATATTGGCATCAA+AGG | 0.530584 | 4_4:+72022756 | None:intergenic |
| GTTTCACTGCAAATCAGGGT+TGG | 0.531039 | 4_4:-72021308 | Msa0700850:CDS |
| TTTATATCTTCTCCATGTTG+AGG | 0.531042 | 4_4:-72020963 | Msa0700850:intron |
| AATGGTTTCACTGCAAATCA+GGG | 0.531344 | 4_4:-72021312 | Msa0700850:CDS |
| ACCGCGATGGATTCTTCATG+TGG | 0.533829 | 4_4:-72021011 | Msa0700850:CDS |
| CTGTCCATAAGCTGTTCTCT+AGG | 0.535255 | 4_4:+72020553 | None:intergenic |
| TGGTCAAGAAAATTGGCATA+AGG | 0.536911 | 4_4:-72020698 | Msa0700850:CDS |
| TATATGGTGGGATAGGAATG+AGG | 0.538426 | 4_4:-72022685 | Msa0700850:CDS |
| TGCCGCAATAAAGCAGGGAA+TGG | 0.543982 | 4_4:-72019941 | Msa0700850:CDS |
| AGATTAGCACCTTTGTCTGA+AGG | 0.545291 | 4_4:-72022627 | Msa0700850:CDS |
| CAAATCAGTCTACTATTACC+AGG | 0.545513 | 4_4:+72021076 | None:intergenic |
| GACAAAGGTGCTAATCTATG+AGG | 0.545842 | 4_4:+72022633 | None:intergenic |
| TAGCACCTTTGTCTGAAGGA+AGG | 0.548699 | 4_4:-72022623 | Msa0700850:CDS |
| ACCTCATGCTAAGAAGGTGA+TGG | 0.549823 | 4_4:-72022721 | Msa0700850:CDS |
| CTACTATTACCAGGACTCAC+AGG | 0.551379 | 4_4:+72021085 | None:intergenic |
| AACCATTCCCTGCTTTATTG+CGG | 0.555375 | 4_4:+72019939 | None:intergenic |
| CATAGAAAATTTCTTCCGAA+CGG | 0.556398 | 4_4:+72021123 | None:intergenic |
| GGATTAACTCCAGACCCAAA+AGG | 0.558427 | 4_4:-72021485 | Msa0700850:intron |
| TAGTAGTAGTAACCTTGAAG+TGG | 0.559062 | 4_4:-72022838 | Msa0700850:CDS |
| CTAGAGAACAGCTTATGGAC+AGG | 0.559328 | 4_4:-72020552 | Msa0700850:intron |
| GGGATAGGAATGAGGGTGCA+TGG | 0.563269 | 4_4:-72022677 | Msa0700850:CDS |
| ATCAATTTCTGGTATGAATG+GGG | 0.563979 | 4_4:+72022076 | None:intergenic |
| GATTCAAAGATATTATTACA+AGG | 0.564688 | 4_4:-72022106 | Msa0700850:CDS |
| GTGAATAATGCTGATAGAGA+AGG | 0.565634 | 4_4:-72021375 | Msa0700850:CDS |
| ATGTTGTTATATGGTGGGAT+AGG | 0.569147 | 4_4:-72022692 | Msa0700850:CDS |
| TCTCTTATAAATAAGATCAG+AGG | 0.569997 | 4_4:-72019641 | Msa0700850:three_prime_UTR |
| GAAGGATTGATCAATGGGGT+AGG | 0.572052 | 4_4:-72022605 | Msa0700850:CDS |
| CAACACTTCCATTAATCCGT+GGG | 0.573800 | 4_4:-72022917 | Msa0700850:CDS |
| CCCATCACCTTCTTAGCATG+AGG | 0.577710 | 4_4:+72022720 | None:intergenic |
| TGTTCTCTAGGAGGTGTAGG+AGG | 0.578002 | 4_4:+72020565 | None:intergenic |
| AGCTGTTCTCTAGGAGGTGT+AGG | 0.578889 | 4_4:+72020562 | None:intergenic |
| CTCTTATAAATAAGATCAGA+GGG | 0.579673 | 4_4:-72019640 | Msa0700850:three_prime_UTR |
| TACTTTCATTCGCATTGTCG+CGG | 0.580974 | 4_4:-72019879 | Msa0700850:CDS |
| CCTCATGCTAAGAAGGTGAT+GGG | 0.582338 | 4_4:-72022720 | Msa0700850:CDS |
| TCAACACTTCCATTAATCCG+TGG | 0.582388 | 4_4:-72022918 | Msa0700850:CDS |
| AATTGATGTTGTTATATGGT+GGG | 0.583888 | 4_4:-72022697 | Msa0700850:CDS |
| CACTTGTGAGTTGAAGAACA+TGG | 0.584686 | 4_4:+72022944 | None:intergenic |
| GAATTGATGTTGTTATATGG+TGG | 0.587435 | 4_4:-72022698 | Msa0700850:CDS |
| TCAATCCTTCCTTCAGACAA+AGG | 0.589654 | 4_4:+72022618 | None:intergenic |
| CAGGTTCAGAGAAATTTGAC+TGG | 0.594416 | 4_4:-72022794 | Msa0700850:CDS |
| GTAATAATATCTTTGAATCG+AGG | 0.598480 | 4_4:+72022110 | None:intergenic |
| TCGACAAAATTGTACCGCGA+TGG | 0.598932 | 4_4:-72021024 | Msa0700850:CDS |
| TCCATAAGCTGTTCTCTAGG+AGG | 0.599001 | 4_4:+72020556 | None:intergenic |
| TTGTGCAGAATAATATCTTG+TGG | 0.604851 | 4_4:-72022151 | Msa0700850:CDS |
| GGTACTGATTGAAAACCTCA+TGG | 0.605597 | 4_4:-72021537 | Msa0700850:CDS |
| TCTTCAATTGAGAAATCAAG+TGG | 0.606160 | 4_4:+72021345 | None:intergenic |
| ATTTCATCGAAGAGCGTACG+TGG | 0.613421 | 4_4:+72019809 | None:intergenic |
| ATATGGTGGGATAGGAATGA+GGG | 0.629185 | 4_4:-72022684 | Msa0700850:CDS |
| CTATAAGAGCCTCAATGTGG+TGG | 0.632112 | 4_4:-72020007 | Msa0700850:CDS |
| TGTGCATATGGAACATGTGA+AGG | 0.634120 | 4_4:+72021512 | None:intergenic |
| GAACAGGTACTGGAGCCATA+CGG | 0.641416 | 4_4:-72020055 | Msa0700850:intron |
| GCATCACTTCCACCACATTG+AGG | 0.645928 | 4_4:+72019998 | None:intergenic |
| TAAAAGGAATTACCTCAACA+TGG | 0.650469 | 4_4:+72020951 | None:intergenic |
| TCAATTTCTGGTATGAATGG+GGG | 0.651927 | 4_4:+72022077 | None:intergenic |
| GGTGATCAAGTTGATTGGAG+AGG | 0.656464 | 4_4:-72020607 | Msa0700850:CDS |
| AACATGCAATTTCAGGTACG+AGG | 0.660550 | 4_4:-72021558 | Msa0700850:intron |
| ATTGTTGCCGCAATAAAGCA+GGG | 0.660696 | 4_4:-72019946 | Msa0700850:CDS |
| GCTAGTGGGATGTGAAGTGA+AGG | 0.662430 | 4_4:+72022996 | None:intergenic |
| GTGCATATGGAACATGTGAA+GGG | 0.665250 | 4_4:+72021513 | None:intergenic |
| TGTTAATGGAGAAGGTGACA+AGG | 0.682450 | 4_4:+72022866 | None:intergenic |
| CCGCGATGGATTCTTCATGT+GGG | 0.687009 | 4_4:-72021010 | Msa0700850:CDS |
| GAACATGTGAAGGGTCCATG+AGG | 0.693173 | 4_4:+72021522 | None:intergenic |
| AATTTGACTGGTACTCACAG+TGG | 0.710936 | 4_4:-72022782 | Msa0700850:CDS |
| AGCCTATAAGAGCCTCAATG+TGG | 0.719694 | 4_4:-72020010 | Msa0700850:CDS |
| TTGGAGAGGAAAATATAGTG+GGG | 0.734428 | 4_4:-72020593 | Msa0700850:CDS |
| CCCACATGAAGAATCCATCG+CGG | 0.771717 | 4_4:+72021010 | None:intergenic |
| GAAGGAAGGATTGATCAATG+GGG | 0.807729 | 4_4:-72022609 | Msa0700850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGACAAAATTATA+CGG | - | chr4_4:72020839-72020858 | Msa0700850:intron | 10.0% |
| !!! | AAAAATGTTTGTTACTTAAA+GGG | - | chr4_4:72020025-72020044 | Msa0700850:CDS | 15.0% |
| !! | ATAATTAAAATGTAGTTGTT+TGG | + | chr4_4:72020805-72020824 | None:intergenic | 15.0% |
| !!! | ACAACTACATTTTAATTATA+CGG | - | chr4_4:72020806-72020825 | Msa0700850:intron | 15.0% |
| !!! | GTATTTTTTTTCAATAGATT+AGG | - | chr4_4:72021701-72021720 | Msa0700850:intron | 15.0% |
| !!! | TAATGTTACTAACTTTTTTT+AGG | - | chr4_4:72021741-72021760 | Msa0700850:intron | 15.0% |
| !!! | TTTTTAGGAACAAAAAATAA+TGG | - | chr4_4:72021756-72021775 | Msa0700850:intron | 15.0% |
| !! | AAAAACTTCACATATATTAA+AGG | + | chr4_4:72022030-72022049 | None:intergenic | 15.0% |
| !! | AGAAATTATTAAATTTGAAC+AGG | - | chr4_4:72022410-72022429 | Msa0700850:intron | 15.0% |
| !! | AAATGTCTCTTATAAATATA+GGG | + | chr4_4:72022750-72022769 | None:intergenic | 15.0% |
| !! | ACAATTGTTAATTCATATAT+TGG | - | chr4_4:72022952-72022971 | Msa0700850:CDS | 15.0% |
| !!! | AAGAACATGGATTTTTTTAA+TGG | + | chr4_4:72019527-72019546 | None:intergenic | 20.0% |
| !!! | GAAAAATGTTTGTTACTTAA+AGG | - | chr4_4:72020024-72020043 | Msa0700850:CDS | 20.0% |
| !!! | TTAACACTAAATTGCATTTT+TGG | + | chr4_4:72020111-72020130 | None:intergenic | 20.0% |
| !! | TGCAATTTAGTGTTAAAAAA+TGG | - | chr4_4:72020115-72020134 | Msa0700850:intron | 20.0% |
| !! | GATTCAAAGATATTATTACA+AGG | - | chr4_4:72020375-72020394 | Msa0700850:intron | 20.0% |
| !! | AAATTAAAATCATACCCATA+AGG | + | chr4_4:72020470-72020489 | None:intergenic | 20.0% |
| !!! | TGATATAATTATTGATGATC+TGG | - | chr4_4:72020579-72020598 | Msa0700850:CDS | 20.0% |
| !! | GAAAGATATACTATTATGTT+AGG | + | chr4_4:72020893-72020912 | None:intergenic | 20.0% |
| !! | CTATATAAATAAAAGATGCT+TGG | + | chr4_4:72021220-72021239 | None:intergenic | 20.0% |
| !! | ACTAATCTGTGAATTATAAA+AGG | + | chr4_4:72021549-72021568 | None:intergenic | 20.0% |
| !! | AAAGTTAGTAACATTATTTG+AGG | + | chr4_4:72021737-72021756 | None:intergenic | 20.0% |
| !!! | TTTTACACTTGAAAATCTAT+TGG | + | chr4_4:72022085-72022104 | None:intergenic | 20.0% |
| !!! | AATATGCTGAAAACATATTT+TGG | + | chr4_4:72022235-72022254 | None:intergenic | 20.0% |
| !! | TATAATAAGTTATCCAAGAA+AGG | + | chr4_4:72022265-72022284 | None:intergenic | 20.0% |
| !! | ATAATTTCTAATCAAGAACA+TGG | + | chr4_4:72022399-72022418 | None:intergenic | 20.0% |
| !! | CAAATGTCTCTTATAAATAT+AGG | + | chr4_4:72022751-72022770 | None:intergenic | 20.0% |
| ! | AATATGTGATCTTGACAAAA+GGG | - | chr4_4:72019736-72019755 | Msa0700850:intron | 25.0% |
| ! | AATTGATGTTGTTATATGGT+GGG | - | chr4_4:72019784-72019803 | Msa0700850:intron | 25.0% |
| !! | CAAACATTTTTCTTCAAAGA+CGG | + | chr4_4:72020016-72020035 | None:intergenic | 25.0% |
| ! | CAAAACCCAAAATTAGTTAA+GGG | - | chr4_4:72020084-72020103 | Msa0700850:intron | 25.0% |
| !! | AATGTGTAACAATTTGCTTT+AGG | - | chr4_4:72020154-72020173 | Msa0700850:intron | 25.0% |
| !! | ATGTGTAACAATTTGCTTTA+GGG | - | chr4_4:72020155-72020174 | Msa0700850:intron | 25.0% |
| ! | CATGATAACAAAACAAACAA+TGG | + | chr4_4:72020228-72020247 | None:intergenic | 25.0% |
| ! | AGTTTATGCAAAAGTAAATG+AGG | + | chr4_4:72020255-72020274 | None:intergenic | 25.0% |
| !! | AGAATAATATCTTGTGGTTT+TGG | - | chr4_4:72020336-72020355 | Msa0700850:intron | 25.0% |
| ! | GTAATAATATCTTTGAATCG+AGG | + | chr4_4:72020374-72020393 | None:intergenic | 25.0% |
| !!! | GCTTAATGTAATTGTTTTAG+TGG | - | chr4_4:72020548-72020567 | Msa0700850:intron | 25.0% |
| !!! | AATTATTGATGATCTGGTTT+TGG | - | chr4_4:72020585-72020604 | Msa0700850:CDS | 25.0% |
| ! | AAAAATGCTATAAACTCATG+AGG | - | chr4_4:72020768-72020787 | Msa0700850:intron | 25.0% |
| ! | TTAATTGAACATGCAATTTC+AGG | - | chr4_4:72020916-72020935 | Msa0700850:intron | 25.0% |
| !! | TGTATATATGTCTACCTTTT+GGG | + | chr4_4:72021013-72021032 | None:intergenic | 25.0% |
| !! | ATGTATATATGTCTACCTTT+TGG | + | chr4_4:72021014-72021033 | None:intergenic | 25.0% |
| ! | GTGTCATATATGAAACAAAT+AGG | + | chr4_4:72021065-72021084 | None:intergenic | 25.0% |
| ! | ATTGAAGAGTTAGATATCAA+TGG | - | chr4_4:72021151-72021170 | Msa0700850:intron | 25.0% |
| ! | TATAAATAAAAGATGCTTGG+TGG | + | chr4_4:72021217-72021236 | None:intergenic | 25.0% |
| !!! | ATTTGCACTCAGTTTTATAT+AGG | - | chr4_4:72021302-72021321 | Msa0700850:CDS | 25.0% |
| !! | GTTTACTTTATTTGATCAAC+GGG | + | chr4_4:72021575-72021594 | None:intergenic | 25.0% |
| !! | GGTTTACTTTATTTGATCAA+CGG | + | chr4_4:72021576-72021595 | None:intergenic | 25.0% |
| ! | ACAATATCAAATTCAATCAC+TGG | - | chr4_4:72021679-72021698 | Msa0700850:intron | 25.0% |
| ! | TAGTAACATTATTTGAGGAA+TGG | + | chr4_4:72021732-72021751 | None:intergenic | 25.0% |
| !!! | TTGTGATTGGTTTTAGAAAA+TGG | - | chr4_4:72021836-72021855 | Msa0700850:intron | 25.0% |
| ! | TAACTCACATAAGATTGAAT+TGG | - | chr4_4:72021956-72021975 | Msa0700850:intron | 25.0% |
| !! | TGCTAAAAATTTGTTCTATC+TGG | - | chr4_4:72022121-72022140 | Msa0700850:CDS | 25.0% |
| !! | ACTTATTTGAGTTTGTTTAG+TGG | - | chr4_4:72022148-72022167 | Msa0700850:CDS | 25.0% |
| ! | TATTAAATTTGAACAGGTAC+TGG | - | chr4_4:72022416-72022435 | Msa0700850:intron | 25.0% |
| ! | AACTTGGAGAAATATAATGA+AGG | + | chr4_4:72022704-72022723 | None:intergenic | 25.0% |
| ! | TTCATTATATTTCTCCAAGT+TGG | - | chr4_4:72022703-72022722 | Msa0700850:CDS | 25.0% |
| ! | TCTCTTATAAATAAGATCAG+AGG | - | chr4_4:72022840-72022859 | Msa0700850:CDS | 25.0% |
| ! | CTCTTATAAATAAGATCAGA+GGG | - | chr4_4:72022841-72022860 | Msa0700850:CDS | 25.0% |
| !!! | TTGTTACTTAAAAAGTGCTT+TGG | - | chr4_4:72022876-72022895 | Msa0700850:CDS | 25.0% |
| ! | TTTGTGTTTTATGTGCTAGT+GGG | + | chr4_4:72019502-72019521 | None:intergenic | 30.0% |
| CTACTACTAGAATCTGTTAA+TGG | + | chr4_4:72019632-72019651 | None:intergenic | 30.0% | |
| ! | CTTTTGTCAAGATCACATAT+TGG | + | chr4_4:72019737-72019756 | None:intergenic | 30.0% |
| CAATATGTGATCTTGACAAA+AGG | - | chr4_4:72019735-72019754 | Msa0700850:intron | 30.0% | |
| TGGGAATTGATGTTGTTATA+TGG | - | chr4_4:72019780-72019799 | Msa0700850:intron | 30.0% | |
| GAATTGATGTTGTTATATGG+TGG | - | chr4_4:72019783-72019802 | Msa0700850:intron | 30.0% | |
| !! | TATCATGGTTGGTGTTTTAA+TGG | - | chr4_4:72019911-72019930 | Msa0700850:CDS | 30.0% |
| !!! | ACTAATTTTGGGTTTTGCTT+TGG | + | chr4_4:72020081-72020100 | None:intergenic | 30.0% |
| GCAAAACCCAAAATTAGTTA+AGG | - | chr4_4:72020083-72020102 | Msa0700850:intron | 30.0% | |
| ! | TTGGTCCCTTAACTAATTTT+GGG | + | chr4_4:72020092-72020111 | None:intergenic | 30.0% |
| ! | TTTGGTCCCTTAACTAATTT+TGG | + | chr4_4:72020093-72020112 | None:intergenic | 30.0% |
| ATATTATTCTGCACAATGCT+TGG | + | chr4_4:72020326-72020345 | None:intergenic | 30.0% | |
| TTGTGCAGAATAATATCTTG+TGG | - | chr4_4:72020330-72020349 | Msa0700850:intron | 30.0% | |
| !! | ATCAATTTCTGGTATGAATG+GGG | + | chr4_4:72020408-72020427 | None:intergenic | 30.0% |
| !! | CATCAATTTCTGGTATGAAT+GGG | + | chr4_4:72020409-72020428 | None:intergenic | 30.0% |
| !! | TCATCAATTTCTGGTATGAA+TGG | + | chr4_4:72020410-72020429 | None:intergenic | 30.0% |
| !! | AATGATGGATCATCAATTTC+TGG | + | chr4_4:72020419-72020438 | None:intergenic | 30.0% |
| GAAACAGAGATATTCCTTAT+GGG | - | chr4_4:72020453-72020472 | Msa0700850:intron | 30.0% | |
| AAATCCAACACATATGCATA+TGG | - | chr4_4:72020521-72020540 | Msa0700850:intron | 30.0% | |
| AGCATGCAAATTATGCTATA+GGG | + | chr4_4:72020659-72020678 | None:intergenic | 30.0% | |
| TAGCATGCAAATTATGCTAT+AGG | + | chr4_4:72020660-72020679 | None:intergenic | 30.0% | |
| AGTCATATAAGCTAACTGTT+TGG | - | chr4_4:72020862-72020881 | Msa0700850:intron | 30.0% | |
| TCTTCAATTGAGAAATCAAG+TGG | + | chr4_4:72021139-72021158 | None:intergenic | 30.0% | |
| CATAGAAAATTTCTTCCGAA+CGG | + | chr4_4:72021361-72021380 | None:intergenic | 30.0% | |
| TTTATATCTTCTCCATGTTG+AGG | - | chr4_4:72021518-72021537 | Msa0700850:CDS | 30.0% | |
| TAAAAGGAATTACCTCAACA+TGG | + | chr4_4:72021533-72021552 | None:intergenic | 30.0% | |
| AGTTATGCTGTCATAGATAA+TGG | - | chr4_4:72021616-72021635 | Msa0700850:intron | 30.0% | |
| !! | GAACAAAAAATAATGGATGC+TGG | - | chr4_4:72021763-72021782 | Msa0700850:intron | 30.0% |
| ! | AAATGGTTAAAGAAGTATGC+AGG | - | chr4_4:72021853-72021872 | Msa0700850:intron | 30.0% |
| ATTGGAGAGGAAAATATAGT+GGG | - | chr4_4:72021887-72021906 | Msa0700850:intron | 30.0% | |
| CATAAGATTGAATTGGAACA+TGG | - | chr4_4:72021963-72021982 | Msa0700850:intron | 30.0% | |
| TGTTGCATTTAGACAATGTT+TGG | + | chr4_4:72022366-72022385 | None:intergenic | 30.0% | |
| AAACATTGTCTAAATGCAAC+AGG | - | chr4_4:72022365-72022384 | Msa0700850:intron | 30.0% | |
| ATCATATCAGTTGCTTCAAT+TGG | - | chr4_4:72022511-72022530 | Msa0700850:intron | 30.0% | |
| TCATATCAGTTGCTTCAATT+GGG | - | chr4_4:72022512-72022531 | Msa0700850:intron | 30.0% | |
| AAGAAATTCTATAGTTGTGC+TGG | - | chr4_4:72022576-72022595 | Msa0700850:intron | 30.0% | |
| TTTATAAGAGACATTTGAGC+CGG | - | chr4_4:72022754-72022773 | Msa0700850:CDS | 30.0% | |
| TCATACACATCAATTTATGC+CGG | + | chr4_4:72022776-72022795 | None:intergenic | 30.0% | |
| ! | GTTTGTGTTTTATGTGCTAG+TGG | + | chr4_4:72019503-72019522 | None:intergenic | 35.0% |
| !!! | TGAATTTTGAAGTGTTCCCA+CGG | + | chr4_4:72019583-72019602 | None:intergenic | 35.0% |
| CTAGAATCTGTTAATGGAGA+AGG | + | chr4_4:72019626-72019645 | None:intergenic | 35.0% | |
| TAGTAGTAGTAACCTTGAAG+TGG | - | chr4_4:72019643-72019662 | Msa0700850:three_prime_UTR | 35.0% | |
| AGATCACATATTGGCATCAA+AGG | + | chr4_4:72019728-72019747 | None:intergenic | 35.0% | |
| ! | ATGTTGTTATATGGTGGGAT+AGG | - | chr4_4:72019789-72019808 | Msa0700850:intron | 35.0% |
| TGAAGGAAGGATTGATCAAT+GGG | - | chr4_4:72019871-72019890 | Msa0700850:CDS | 35.0% | |
| ! | ACATTTTTCTTCAAAGACGG+CGG | + | chr4_4:72020013-72020032 | None:intergenic | 35.0% |
| ACATCTGTTTCGTTTCACTT+TGG | + | chr4_4:72020052-72020071 | None:intergenic | 35.0% | |
| GTGAAACGAAACAGATGTAA+AGG | - | chr4_4:72020054-72020073 | Msa0700850:intron | 35.0% | |
| TTTACACTGCAACACATCTA+TGG | + | chr4_4:72020196-72020215 | None:intergenic | 35.0% | |
| TTGAATCGAGGATCAGTATT+TGG | + | chr4_4:72020362-72020381 | None:intergenic | 35.0% | |
| !! | TCAATTTCTGGTATGAATGG+GGG | + | chr4_4:72020407-72020426 | None:intergenic | 35.0% |
| ! | TCCATCATTTGCTAGCTTAA+TGG | - | chr4_4:72020430-72020449 | Msa0700850:intron | 35.0% |
| ! | CCATCATTTGCTAGCTTAAT+GGG | - | chr4_4:72020431-72020450 | Msa0700850:intron | 35.0% |
| GGAAACAGAGATATTCCTTA+TGG | - | chr4_4:72020452-72020471 | Msa0700850:intron | 35.0% | |
| TATGCCATATGCATATGTGT+TGG | + | chr4_4:72020528-72020547 | None:intergenic | 35.0% | |
| GTTAATCCATAGTGTGCATA+TGG | + | chr4_4:72020984-72021003 | None:intergenic | 35.0% | |
| GTGAATAATGCTGATAGAGA+AGG | - | chr4_4:72021106-72021125 | Msa0700850:CDS | 35.0% | |
| AATAATGCTGATAGAGAAGG+AGG | - | chr4_4:72021109-72021128 | Msa0700850:CDS | 35.0% | |
| AATGGTTTCACTGCAAATCA+GGG | - | chr4_4:72021169-72021188 | Msa0700850:intron | 35.0% | |
| TGCATCTTCTGTTGAAACTA+AGG | - | chr4_4:72021255-72021274 | Msa0700850:CDS | 35.0% | |
| TAATGCAGAAATCATCCGTT+CGG | - | chr4_4:72021343-72021362 | Msa0700850:CDS | 35.0% | |
| CAAATCAGTCTACTATTACC+AGG | + | chr4_4:72021408-72021427 | None:intergenic | 35.0% | |
| CTGGTAATAGTAGACTGATT+TGG | - | chr4_4:72021406-72021425 | Msa0700850:intron | 35.0% | |
| TGGTCAAGAAAATTGGCATA+AGG | - | chr4_4:72021783-72021802 | Msa0700850:intron | 35.0% | |
| GATTGGAGAGGAAAATATAG+TGG | - | chr4_4:72021886-72021905 | Msa0700850:intron | 35.0% | |
| TTGGAGAGGAAAATATAGTG+GGG | - | chr4_4:72021888-72021907 | Msa0700850:intron | 35.0% | |
| TTAGTGGCATAAACACTTGT+AGG | - | chr4_4:72022164-72022183 | Msa0700850:CDS | 35.0% | |
| CATATTTCCACAACCTTTCT+TGG | - | chr4_4:72022249-72022268 | Msa0700850:intron | 35.0% | |
| AAGTTATCCAAGAAAGGTTG+TGG | + | chr4_4:72022259-72022278 | None:intergenic | 35.0% | |
| GAGTATATACGTAACCAACT+TGG | + | chr4_4:72022720-72022739 | None:intergenic | 35.0% | |
| GTCTCTTATAAATATAGGGC+CGG | + | chr4_4:72022746-72022765 | None:intergenic | 35.0% | |
| ! | TTTGGAACATTTGTCTGTTG+TGG | - | chr4_4:72022894-72022913 | Msa0700850:CDS | 35.0% |
| ! | CACTTGTGAGTTGAAGAACA+TGG | + | chr4_4:72019540-72019559 | None:intergenic | 40.0% |
| TCAACACTTCCATTAATCCG+TGG | - | chr4_4:72019563-72019582 | Msa0700850:three_prime_UTR | 40.0% | |
| CAACACTTCCATTAATCCGT+GGG | - | chr4_4:72019564-72019583 | Msa0700850:three_prime_UTR | 40.0% | |
| TGTTAATGGAGAAGGTGACA+AGG | + | chr4_4:72019618-72019637 | None:intergenic | 40.0% | |
| GATGAACCAGAAGTTGAAAC+AGG | - | chr4_4:72019668-72019687 | Msa0700850:three_prime_UTR | 40.0% | |
| TCTGAACCTGTTTCAACTTC+TGG | + | chr4_4:72019677-72019696 | None:intergenic | 40.0% | |
| CAGGTTCAGAGAAATTTGAC+TGG | - | chr4_4:72019687-72019706 | Msa0700850:intron | 40.0% | |
| AATTTGACTGGTACTCACAG+TGG | - | chr4_4:72019699-72019718 | Msa0700850:intron | 40.0% | |
| ! | TATATGGTGGGATAGGAATG+AGG | - | chr4_4:72019796-72019815 | Msa0700850:intron | 40.0% |
| ! | ATATGGTGGGATAGGAATGA+GGG | - | chr4_4:72019797-72019816 | Msa0700850:intron | 40.0% |
| !! | GACAAAGGTGCTAATCTATG+AGG | + | chr4_4:72019851-72019870 | None:intergenic | 40.0% |
| AGATTAGCACCTTTGTCTGA+AGG | - | chr4_4:72019854-72019873 | Msa0700850:CDS | 40.0% | |
| TCAATCCTTCCTTCAGACAA+AGG | + | chr4_4:72019866-72019885 | None:intergenic | 40.0% | |
| CTGAAGGAAGGATTGATCAA+TGG | - | chr4_4:72019870-72019889 | Msa0700850:CDS | 40.0% | |
| GAAGGAAGGATTGATCAATG+GGG | - | chr4_4:72019872-72019891 | Msa0700850:CDS | 40.0% | |
| AGGTTACAGTGTGTGTATCA+TGG | - | chr4_4:72019896-72019915 | Msa0700850:CDS | 40.0% | |
| TACAGTGTGTGTATCATGGT+TGG | - | chr4_4:72019900-72019919 | Msa0700850:CDS | 40.0% | |
| !!! | GGTTGGTGTTTTAATGGATC+AGG | - | chr4_4:72019917-72019936 | Msa0700850:CDS | 40.0% |
| TGATTGCAAGTTCATTCCTC+AGG | - | chr4_4:72019940-72019959 | Msa0700850:CDS | 40.0% | |
| !! | GTATCAGAAGGACTAGTTAC+CGG | + | chr4_4:72019983-72020002 | None:intergenic | 40.0% |
| !! | GGCGGTTAAAAAGTATCAGA+AGG | + | chr4_4:72019995-72020014 | None:intergenic | 40.0% |
| !!! | AGCAGCTACACATGCTTTTT+TGG | + | chr4_4:72020300-72020319 | None:intergenic | 40.0% |
| CCCATTAAGCTAGCAAATGA+TGG | + | chr4_4:72020434-72020453 | None:intergenic | 40.0% | |
| GCATGCTATGCTACTATTCT+AGG | - | chr4_4:72020672-72020691 | Msa0700850:CDS | 40.0% | |
| ! | AACATGCAATTTCAGGTACG+AGG | - | chr4_4:72020923-72020942 | Msa0700850:intron | 40.0% |
| !! | GGTACTGATTGAAAACCTCA+TGG | - | chr4_4:72020944-72020963 | Msa0700850:intron | 40.0% |
| GTGCATATGGAACATGTGAA+GGG | + | chr4_4:72020971-72020990 | None:intergenic | 40.0% | |
| TGTGCATATGGAACATGTGA+AGG | + | chr4_4:72020972-72020991 | None:intergenic | 40.0% | |
| CATGTTCCATATGCACACTA+TGG | - | chr4_4:72020975-72020994 | Msa0700850:CDS | 40.0% | |
| !! | ATATGTCTACCTTTTGGGTC+TGG | + | chr4_4:72021008-72021027 | None:intergenic | 40.0% |
| CAATGGTTTCACTGCAAATC+AGG | - | chr4_4:72021168-72021187 | Msa0700850:intron | 40.0% | |
| ACAGAAGATGCAAGTTCATC+TGG | + | chr4_4:72021247-72021266 | None:intergenic | 40.0% | |
| ATTTGTATTCCTGTGAGTCC+TGG | - | chr4_4:72021387-72021406 | Msa0700850:intron | 40.0% | |
| ! | TGGTGCTTTCCGAGAAATTT+TGG | - | chr4_4:72021426-72021445 | Msa0700850:intron | 40.0% |
| ! | TTCCGAGAAATTTTGGACTG+TGG | - | chr4_4:72021433-72021452 | Msa0700850:intron | 40.0% |
| ! | TCCGAGAAATTTTGGACTGT+GGG | - | chr4_4:72021434-72021453 | Msa0700850:intron | 40.0% |
| ACCCACAGTCCAAAATTTCT+CGG | + | chr4_4:72021438-72021457 | None:intergenic | 40.0% | |
| AACCATCACACTTGCAGATT+TGG | - | chr4_4:72021592-72021611 | Msa0700850:intron | 40.0% | |
| ACCATCACACTTGCAGATTT+GGG | - | chr4_4:72021593-72021612 | Msa0700850:intron | 40.0% | |
| TGGATGCTGGTCAAGAAAAT+TGG | - | chr4_4:72021776-72021795 | Msa0700850:intron | 40.0% | |
| !! | ATGCAGGTGATCAAGTTGAT+TGG | - | chr4_4:72021869-72021888 | Msa0700850:intron | 40.0% |
| ! | TGTAGGTTGTGAGACTGTTT+TGG | - | chr4_4:72022181-72022200 | Msa0700850:CDS | 40.0% |
| AACTCTTGCAATTCACCGTA+TGG | + | chr4_4:72022444-72022463 | None:intergenic | 40.0% | |
| ATTGTTGCCGCAATAAAGCA+GGG | - | chr4_4:72022535-72022554 | Msa0700850:intron | 40.0% | |
| ! | AACCATTCCCTGCTTTATTG+CGG | + | chr4_4:72022545-72022564 | None:intergenic | 40.0% |
| TACTTTCATTCGCATTGTCG+CGG | - | chr4_4:72022602-72022621 | Msa0700850:CDS | 40.0% | |
| CTTATAAATATAGGGCCGGA+GGG | + | chr4_4:72022742-72022761 | None:intergenic | 40.0% | |
| TCTTATAAATATAGGGCCGG+AGG | + | chr4_4:72022743-72022762 | None:intergenic | 40.0% | |
| ATTTCTCCAAGAACCTTCAC+AGG | + | chr4_4:72022922-72022941 | None:intergenic | 40.0% | |
| ! | GAAGTGTTCCCACGGATTAA+TGG | + | chr4_4:72019575-72019594 | None:intergenic | 45.0% |
| CTGGTTCATCATCCACTTCA+AGG | + | chr4_4:72019658-72019677 | None:intergenic | 45.0% | |
| ACCTCATGCTAAGAAGGTGA+TGG | - | chr4_4:72019760-72019779 | Msa0700850:intron | 45.0% | |
| CCTCATGCTAAGAAGGTGAT+GGG | - | chr4_4:72019761-72019780 | Msa0700850:intron | 45.0% | |
| TAGCACCTTTGTCTGAAGGA+AGG | - | chr4_4:72019858-72019877 | Msa0700850:CDS | 45.0% | |
| GAAGGATTGATCAATGGGGT+AGG | - | chr4_4:72019876-72019895 | Msa0700850:CDS | 45.0% | |
| GGATTAACTCCAGACCCAAA+AGG | - | chr4_4:72020996-72021015 | Msa0700850:CDS | 45.0% | |
| GTTTCACTGCAAATCAGGGT+TGG | - | chr4_4:72021173-72021192 | Msa0700850:intron | 45.0% | |
| CTACTATTACCAGGACTCAC+AGG | + | chr4_4:72021399-72021418 | None:intergenic | 45.0% | |
| TCGACAAAATTGTACCGCGA+TGG | - | chr4_4:72021457-72021476 | Msa0700850:intron | 45.0% | |
| TCCCAAATCTGCAAGTGTGA+TGG | + | chr4_4:72021597-72021616 | None:intergenic | 45.0% | |
| TGCCTTTGTTGGCACAAAAC+AGG | + | chr4_4:72021809-72021828 | None:intergenic | 45.0% | |
| !! | ACAAGAGCATCTGCCTTTGT+TGG | + | chr4_4:72021820-72021839 | None:intergenic | 45.0% |
| AAGGCAGATGCTCTTGTGAT+TGG | - | chr4_4:72021823-72021842 | Msa0700850:intron | 45.0% | |
| !! | GGTGATCAAGTTGATTGGAG+AGG | - | chr4_4:72021874-72021893 | Msa0700850:intron | 45.0% |
| ACCTCCTAGAGAACAGCTTA+TGG | - | chr4_4:72021924-72021943 | Msa0700850:intron | 45.0% | |
| TCCATAAGCTGTTCTCTAGG+AGG | + | chr4_4:72021928-72021947 | None:intergenic | 45.0% | |
| CTGTCCATAAGCTGTTCTCT+AGG | + | chr4_4:72021931-72021950 | None:intergenic | 45.0% | |
| CTAGAGAACAGCTTATGGAC+AGG | - | chr4_4:72021929-72021948 | Msa0700850:intron | 45.0% | |
| AGAACAGCTTATGGACAGGT+AGG | - | chr4_4:72021933-72021952 | Msa0700850:intron | 45.0% | |
| AGCCTATAAGAGCCTCAATG+TGG | - | chr4_4:72022471-72022490 | Msa0700850:intron | 45.0% | |
| CACCACATTGAGGCTCTTAT+AGG | + | chr4_4:72022476-72022495 | None:intergenic | 45.0% | |
| CTATAAGAGCCTCAATGTGG+TGG | - | chr4_4:72022474-72022493 | Msa0700850:intron | 45.0% | |
| GATTGTTGCCGCAATAAAGC+AGG | - | chr4_4:72022534-72022553 | Msa0700850:intron | 45.0% | |
| ! | ATTTCATCGAAGAGCGTACG+TGG | + | chr4_4:72022675-72022694 | None:intergenic | 45.0% |
| GGTTACGTATATACTCCCTC+CGG | - | chr4_4:72022724-72022743 | Msa0700850:CDS | 45.0% | |
| GCTAGTGGGATGTGAAGTGA+AGG | + | chr4_4:72019488-72019507 | None:intergenic | 50.0% | |
| !! | AAGGGCACCTCATGCTAAGA+AGG | - | chr4_4:72019754-72019773 | Msa0700850:intron | 50.0% |
| CCCATCACCTTCTTAGCATG+AGG | + | chr4_4:72019764-72019783 | None:intergenic | 50.0% | |
| !! | TCAGAAGGACTAGTTACCGG+AGG | + | chr4_4:72019980-72019999 | None:intergenic | 50.0% |
| GAACATGTGAAGGGTCCATG+AGG | + | chr4_4:72020962-72020981 | None:intergenic | 50.0% | |
| ! | ACCGCGATGGATTCTTCATG+TGG | - | chr4_4:72021470-72021489 | Msa0700850:intron | 50.0% |
| CCCACATGAAGAATCCATCG+CGG | + | chr4_4:72021474-72021493 | None:intergenic | 50.0% | |
| ! | CCGCGATGGATTCTTCATGT+GGG | - | chr4_4:72021471-72021490 | Msa0700850:intron | 50.0% |
| ! | GGCCTGTTTTGTGCCAACAA+AGG | - | chr4_4:72021804-72021823 | Msa0700850:intron | 50.0% |
| ! | TGTTCTCTAGGAGGTGTAGG+AGG | + | chr4_4:72021919-72021938 | None:intergenic | 50.0% |
| ! | AGCTGTTCTCTAGGAGGTGT+AGG | + | chr4_4:72021922-72021941 | None:intergenic | 50.0% |
| !! | GAACAGGTACTGGAGCCATA+CGG | - | chr4_4:72022426-72022445 | Msa0700850:intron | 50.0% |
| GCATCACTTCCACCACATTG+AGG | + | chr4_4:72022486-72022505 | None:intergenic | 50.0% | |
| TGCCGCAATAAAGCAGGGAA+TGG | - | chr4_4:72022540-72022559 | Msa0700850:intron | 50.0% | |
| GTCTGTTGTGGAACCTGTGA+AGG | - | chr4_4:72022906-72022925 | Msa0700850:CDS | 50.0% | |
| GTGGAACCTGTGAAGGTTCT+TGG | - | chr4_4:72022913-72022932 | Msa0700850:CDS | 50.0% | |
| ! | GGGATAGGAATGAGGGTGCA+TGG | - | chr4_4:72019804-72019823 | Msa0700850:intron | 55.0% |
| ATTCCTCAGGCACCTCCTGA+AGG | - | chr4_4:72019953-72019972 | Msa0700850:CDS | 55.0% | |
| CTAGTTACCGGAGGTCCTTC+AGG | + | chr4_4:72019971-72019990 | None:intergenic | 55.0% | |
| GTTACCGGAGGTCCTTCAGG+AGG | + | chr4_4:72019968-72019987 | None:intergenic | 60.0% | |
| !! | GGTCCTTCAGGAGGTGCCTG+AGG | + | chr4_4:72019959-72019978 | None:intergenic | 65.0% |
| GGCACCTCCTGAAGGACCTC+CGG | - | chr4_4:72019961-72019980 | Msa0700850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72019458 | 72023045 | 72019458 | ID=Msa0700850;Name=Msa0700850 |
| chr4_4 | mRNA | 72019458 | 72023045 | 72019458 | ID=Msa0700850-mRNA-1;Parent=Msa0700850;Name=Msa0700850-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.85|0.87|1|0.71|0.62|8|233|511 |
| chr4_4 | exon | 72019458 | 72019700 | 72019458 | ID=Msa0700850-mRNA-1:exon:21988;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72019811 | 72020071 | 72019811 | ID=Msa0700850-mRNA-1:exon:21987;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72020553 | 72020740 | 72020553 | ID=Msa0700850-mRNA-1:exon:21986;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72020964 | 72021152 | 72020964 | ID=Msa0700850-mRNA-1:exon:21985;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72021227 | 72021396 | 72021227 | ID=Msa0700850-mRNA-1:exon:21984;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72021486 | 72021565 | 72021486 | ID=Msa0700850-mRNA-1:exon:21983;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72022029 | 72022216 | 72022029 | ID=Msa0700850-mRNA-1:exon:21982;Parent=Msa0700850-mRNA-1 |
| chr4_4 | exon | 72022596 | 72023045 | 72022596 | ID=Msa0700850-mRNA-1:exon:21981;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72022596 | 72023045 | 72022596 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72022029 | 72022216 | 72022029 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72021486 | 72021565 | 72021486 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72021227 | 72021396 | 72021227 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72020964 | 72021152 | 72020964 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72020553 | 72020740 | 72020553 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72019811 | 72020071 | 72019811 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | CDS | 72019691 | 72019700 | 72019691 | ID=Msa0700850-mRNA-1:cds;Parent=Msa0700850-mRNA-1 |
| chr4_4 | three_prime_UTR | 72019458 | 72019690 | 72019458 | ID=Msa0700850-mRNA-1:three_prime_utr;Parent=Msa0700850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
