Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003490 | sp|Q9XES5|DFRA_MALDO | 73.620 | 326 | 86 | 0 | 1 | 326 | 1 | 326 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003490 | Msa0146460 | 0.970857 | 2.935593e-132 | -8.615850e-47 |
| Msa0003490 | Msa0184070 | 0.810538 | 1.096533e-50 | -8.615850e-47 |
| Msa0003490 | Msa0285710 | 0.818487 | 1.910301e-52 | -8.615850e-47 |
| Msa0003490 | Msa0358230 | 0.813347 | 2.680508e-51 | -8.615850e-47 |
| Msa0003490 | Msa0358710 | 0.827262 | 1.724444e-54 | -8.615850e-47 |
| Msa0003490 | Msa0404870 | 0.823000 | 1.752417e-53 | -8.615850e-47 |
| Msa0003490 | Msa0418480 | 0.839058 | 1.988483e-57 | -8.615850e-47 |
| Msa0003490 | Msa0431800 | 0.832480 | 9.228539e-56 | -8.615850e-47 |
| Msa0003490 | Msa0450780 | 0.800878 | 1.172347e-48 | -8.615850e-47 |
| Msa0003490 | Msa0465860 | 0.834640 | 2.667024e-56 | -8.615850e-47 |
| Msa0003490 | Msa0477070 | 0.805428 | 1.341567e-49 | -8.615850e-47 |
| Msa0003490 | Msa0482580 | 0.826011 | 3.427125e-54 | -8.615850e-47 |
| Msa0003490 | Msa0493640 | 0.804006 | 2.657576e-49 | -8.615850e-47 |
| Msa0003490 | Msa0510230 | 0.830205 | 3.348517e-55 | -8.615850e-47 |
| Msa0003490 | Msa0520730 | 0.830451 | 2.914892e-55 | -8.615850e-47 |
| Msa0003490 | Msa0521440 | 0.803864 | 2.844031e-49 | -8.615850e-47 |
| Msa0003490 | Msa0558820 | 0.810065 | 1.387072e-50 | -8.615850e-47 |
| Msa0003490 | Msa0610910 | 0.825860 | 3.723515e-54 | -8.615850e-47 |
| Msa0003490 | Msa0651490 | 0.803810 | 2.917784e-49 | -8.615850e-47 |
| Msa0003490 | Msa0700850 | 0.807575 | 4.727539e-50 | -8.615850e-47 |
| Msa0003490 | Msa0700910 | 0.807676 | 4.498719e-50 | -8.615850e-47 |
| Msa0003490 | Msa0866960 | 0.802671 | 5.023487e-49 | -8.615850e-47 |
| Msa0003490 | Msa1129920 | 0.809950 | 1.468514e-50 | -8.615850e-47 |
| Msa0003490 | Msa1173020 | 0.819124 | 1.369298e-52 | -8.615850e-47 |
| Msa0003490 | Msa1178470 | 0.801369 | 9.299744e-49 | -8.615850e-47 |
| Msa0003490 | Msa1216820 | 0.809837 | 1.553090e-50 | -8.615850e-47 |
| Msa0003490 | Msa1217020 | 0.824744 | 6.835786e-54 | -8.615850e-47 |
| Msa0003490 | Msa1217170 | 0.849757 | 2.634900e-60 | -8.615850e-47 |
| Msa0003490 | Msa1232860 | 0.805783 | 1.130003e-49 | -8.615850e-47 |
| Msa0003490 | Msa1261340 | 0.822255 | 2.612488e-53 | -8.615850e-47 |
| Msa0003490 | Msa1261360 | 0.813467 | 2.522607e-51 | -8.615850e-47 |
| Msa0003490 | Msa1261370 | 0.818579 | 1.820759e-52 | -8.615850e-47 |
| Msa0003490 | Msa1261400 | 0.818385 | 2.015394e-52 | -8.615850e-47 |
| Msa0003490 | Msa1262630 | 0.847629 | 1.024871e-59 | -8.615850e-47 |
| Msa0003490 | Msa1341340 | 0.812000 | 5.284224e-51 | -8.615850e-47 |
| Msa0003490 | Msa1385600 | 0.964294 | 3.808468e-123 | -8.615850e-47 |
| Msa0003490 | Msa1421810 | 0.836053 | 1.171953e-56 | -8.615850e-47 |
| Msa0003490 | Msa1427390 | 0.804878 | 1.748537e-49 | -8.615850e-47 |
| Msa0003490 | Msa1439680 | 0.809823 | 1.564253e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003490 | MtrunA17_Chr1g0155431 | 96.375 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 0.0 | 663 |
| Msa0003490 | MtrunA17_Chr1g0155411 | 79.104 | 335 | 70 | 0 | 1 | 335 | 1 | 335 | 0.0 | 574 |
| Msa0003490 | MtrunA17_Chr7g0245671 | 47.516 | 322 | 165 | 3 | 8 | 325 | 8 | 329 | 1.59e-101 | 302 |
| Msa0003490 | MtrunA17_Chr7g0245691 | 47.678 | 323 | 164 | 4 | 8 | 325 | 8 | 330 | 2.04e-101 | 301 |
| Msa0003490 | MtrunA17_Chr7g0245741 | 48.287 | 321 | 161 | 4 | 8 | 325 | 8 | 326 | 2.98e-101 | 301 |
| Msa0003490 | MtrunA17_Chr7g0245641 | 45.963 | 322 | 170 | 4 | 8 | 325 | 45 | 366 | 1.24e-96 | 291 |
| Msa0003490 | MtrunA17_Chr7g0245731 | 47.352 | 321 | 164 | 4 | 8 | 325 | 58 | 376 | 3.12e-96 | 290 |
| Msa0003490 | MtrunA17_Chr4g0048961 | 42.769 | 325 | 175 | 4 | 9 | 324 | 15 | 337 | 1.55e-94 | 284 |
| Msa0003490 | MtrunA17_Chr7g0245631 | 44.548 | 321 | 173 | 4 | 8 | 325 | 8 | 326 | 2.50e-94 | 283 |
| Msa0003490 | MtrunA17_Chr4g0010991 | 42.724 | 323 | 181 | 2 | 7 | 325 | 7 | 329 | 8.05e-92 | 277 |
| Msa0003490 | MtrunA17_Chr4g0042101 | 41.935 | 341 | 164 | 8 | 9 | 326 | 25 | 354 | 2.35e-89 | 271 |
| Msa0003490 | MtrunA17_Chr7g0245711 | 45.614 | 285 | 151 | 3 | 43 | 325 | 6 | 288 | 4.71e-79 | 243 |
| Msa0003490 | MtrunA17_Chr3g0077231 | 38.650 | 326 | 187 | 6 | 5 | 325 | 3 | 320 | 1.10e-77 | 241 |
| Msa0003490 | MtrunA17_Chr3g0077221 | 38.037 | 326 | 189 | 6 | 2 | 322 | 4 | 321 | 1.90e-76 | 238 |
| Msa0003490 | MtrunA17_Chr8g0364051 | 40.244 | 328 | 186 | 6 | 1 | 325 | 1 | 321 | 4.31e-75 | 234 |
| Msa0003490 | MtrunA17_Chr5g0423551 | 39.688 | 320 | 185 | 6 | 9 | 325 | 5 | 319 | 8.50e-75 | 233 |
| Msa0003490 | MtrunA17_Chr2g0331211 | 37.651 | 332 | 198 | 6 | 4 | 332 | 1 | 326 | 3.63e-74 | 232 |
| Msa0003490 | MtrunA17_Chr8g0363831 | 38.922 | 334 | 182 | 7 | 1 | 325 | 2 | 322 | 3.27e-73 | 229 |
| Msa0003490 | MtrunA17_Chr4g0039321 | 37.963 | 324 | 192 | 5 | 2 | 322 | 3 | 320 | 6.60e-71 | 223 |
| Msa0003490 | MtrunA17_Chr4g0039311 | 38.941 | 321 | 187 | 6 | 5 | 322 | 8 | 322 | 8.64e-70 | 221 |
| Msa0003490 | MtrunA17_Chr4g0001321 | 39.571 | 326 | 179 | 10 | 6 | 326 | 15 | 327 | 1.72e-67 | 215 |
| Msa0003490 | MtrunA17_Chr2g0333781 | 40.123 | 324 | 180 | 10 | 5 | 325 | 17 | 329 | 6.44e-67 | 214 |
| Msa0003490 | MtrunA17_Chr5g0431311 | 35.866 | 329 | 194 | 8 | 4 | 325 | 1 | 319 | 1.09e-64 | 207 |
| Msa0003490 | MtrunA17_Chr3g0106111 | 35.562 | 329 | 195 | 7 | 4 | 325 | 1 | 319 | 1.05e-63 | 204 |
| Msa0003490 | MtrunA17_Chr4g0002661 | 36.335 | 322 | 190 | 10 | 8 | 325 | 13 | 323 | 1.21e-63 | 205 |
| Msa0003490 | MtrunA17_Chr4g0002961 | 35.514 | 321 | 194 | 9 | 8 | 325 | 13 | 323 | 3.67e-56 | 185 |
| Msa0003490 | MtrunA17_Chr2g0281991 | 34.524 | 336 | 199 | 7 | 8 | 325 | 8 | 340 | 4.28e-56 | 186 |
| Msa0003490 | MtrunA17_Chr2g0282001 | 33.832 | 334 | 200 | 7 | 8 | 323 | 7 | 337 | 2.90e-54 | 181 |
| Msa0003490 | MtrunA17_Chr2g0291541 | 33.030 | 330 | 200 | 10 | 6 | 325 | 8 | 326 | 1.35e-49 | 169 |
| Msa0003490 | MtrunA17_Chr2g0282011 | 33.234 | 334 | 202 | 7 | 8 | 323 | 8 | 338 | 2.84e-49 | 168 |
| Msa0003490 | MtrunA17_Chr7g0275521 | 31.250 | 336 | 211 | 7 | 8 | 325 | 7 | 340 | 1.51e-46 | 160 |
| Msa0003490 | MtrunA17_Chr5g0411071 | 29.712 | 313 | 184 | 11 | 5 | 305 | 9 | 297 | 5.94e-32 | 121 |
| Msa0003490 | MtrunA17_Chr6g0450211 | 29.297 | 256 | 161 | 10 | 8 | 253 | 55 | 300 | 8.64e-24 | 100 |
| Msa0003490 | MtrunA17_Chr3g0133771 | 28.315 | 279 | 169 | 10 | 8 | 277 | 4 | 260 | 2.34e-18 | 84.7 |
| Msa0003490 | MtrunA17_Chr3g0080551 | 35.398 | 113 | 62 | 5 | 99 | 205 | 13 | 120 | 1.05e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003490 | AT5G42800.1 | 69.325 | 326 | 100 | 0 | 1 | 326 | 1 | 326 | 2.83e-176 | 494 |
| Msa0003490 | AT4G35420.1 | 42.500 | 320 | 176 | 6 | 8 | 325 | 8 | 321 | 9.96e-89 | 270 |
| Msa0003490 | AT2G45400.1 | 43.077 | 325 | 178 | 3 | 8 | 325 | 40 | 364 | 2.26e-87 | 267 |
| Msa0003490 | AT1G61720.1 | 42.342 | 333 | 175 | 5 | 5 | 325 | 10 | 337 | 1.10e-86 | 265 |
| Msa0003490 | AT4G27250.1 | 38.393 | 336 | 181 | 9 | 3 | 317 | 8 | 338 | 5.76e-79 | 245 |
| Msa0003490 | AT1G09510.1 | 42.073 | 328 | 181 | 5 | 1 | 325 | 1 | 322 | 2.82e-78 | 243 |
| Msa0003490 | AT4G27250.2 | 38.602 | 329 | 180 | 8 | 3 | 317 | 8 | 328 | 1.74e-77 | 241 |
| Msa0003490 | AT1G51410.1 | 38.700 | 323 | 189 | 5 | 6 | 325 | 7 | 323 | 3.80e-77 | 240 |
| Msa0003490 | AT2G45400.2 | 43.885 | 278 | 149 | 3 | 8 | 278 | 40 | 317 | 6.06e-76 | 236 |
| Msa0003490 | AT5G19440.1 | 39.692 | 325 | 183 | 6 | 5 | 324 | 7 | 323 | 1.43e-72 | 228 |
| Msa0003490 | AT1G66800.1 | 39.198 | 324 | 184 | 8 | 1 | 319 | 1 | 316 | 4.15e-70 | 221 |
| Msa0003490 | AT2G45400.3 | 40.345 | 290 | 168 | 2 | 41 | 325 | 18 | 307 | 2.60e-69 | 219 |
| Msa0003490 | AT1G68540.1 | 38.629 | 321 | 187 | 7 | 10 | 325 | 6 | 321 | 7.51e-69 | 218 |
| Msa0003490 | AT1G09490.1 | 38.279 | 337 | 181 | 8 | 1 | 325 | 1 | 322 | 6.54e-68 | 216 |
| Msa0003490 | AT1G09480.2 | 38.253 | 332 | 188 | 8 | 1 | 325 | 1 | 322 | 1.50e-65 | 210 |
| Msa0003490 | AT1G15950.3 | 38.889 | 324 | 184 | 10 | 5 | 325 | 10 | 322 | 1.79e-65 | 210 |
| Msa0003490 | AT1G15950.1 | 38.889 | 324 | 184 | 10 | 5 | 325 | 10 | 322 | 1.79e-65 | 210 |
| Msa0003490 | AT2G33590.1 | 36.449 | 321 | 192 | 8 | 8 | 325 | 9 | 320 | 4.20e-65 | 209 |
| Msa0003490 | AT1G09480.1 | 38.253 | 332 | 188 | 8 | 1 | 325 | 48 | 369 | 4.38e-65 | 210 |
| Msa0003490 | AT1G25460.1 | 37.879 | 330 | 186 | 9 | 4 | 325 | 1 | 319 | 1.47e-64 | 207 |
| Msa0003490 | AT1G15950.2 | 39.228 | 311 | 176 | 9 | 5 | 312 | 10 | 310 | 1.03e-63 | 206 |
| Msa0003490 | AT2G02400.1 | 36.556 | 331 | 183 | 11 | 6 | 325 | 4 | 318 | 1.19e-63 | 205 |
| Msa0003490 | AT1G80820.1 | 38.820 | 322 | 183 | 10 | 8 | 326 | 8 | 318 | 2.24e-63 | 204 |
| Msa0003490 | AT5G58490.1 | 35.168 | 327 | 195 | 7 | 6 | 325 | 7 | 323 | 5.08e-63 | 203 |
| Msa0003490 | AT1G09500.1 | 36.418 | 335 | 193 | 8 | 1 | 325 | 1 | 325 | 7.86e-63 | 203 |
| Msa0003490 | AT1G09500.3 | 38.328 | 287 | 160 | 6 | 1 | 279 | 1 | 278 | 1.62e-61 | 198 |
| Msa0003490 | AT2G33600.1 | 35.312 | 320 | 197 | 7 | 8 | 325 | 9 | 320 | 3.42e-59 | 193 |
| Msa0003490 | AT2G45400.4 | 46.759 | 216 | 108 | 3 | 8 | 216 | 40 | 255 | 1.31e-57 | 187 |
| Msa0003490 | AT1G15950.6 | 40.072 | 277 | 154 | 8 | 5 | 279 | 10 | 276 | 2.27e-57 | 187 |
| Msa0003490 | AT1G15950.4 | 39.643 | 280 | 157 | 8 | 5 | 282 | 10 | 279 | 2.38e-57 | 188 |
| Msa0003490 | AT1G15950.5 | 39.711 | 277 | 155 | 8 | 5 | 279 | 10 | 276 | 1.53e-56 | 185 |
| Msa0003490 | AT1G80820.2 | 39.416 | 274 | 154 | 8 | 8 | 279 | 8 | 271 | 1.19e-54 | 180 |
| Msa0003490 | AT1G76470.1 | 33.028 | 327 | 213 | 6 | 3 | 327 | 2 | 324 | 5.32e-54 | 180 |
| Msa0003490 | AT1G09490.2 | 35.570 | 298 | 165 | 8 | 40 | 325 | 9 | 291 | 3.32e-49 | 167 |
| Msa0003490 | AT1G09500.2 | 34.007 | 297 | 176 | 8 | 39 | 325 | 5 | 291 | 2.53e-45 | 156 |
| Msa0003490 | AT1G68540.2 | 35.616 | 219 | 132 | 6 | 111 | 325 | 1 | 214 | 2.70e-35 | 128 |
| Msa0003490 | AT1G15950.7 | 34.783 | 230 | 141 | 7 | 99 | 325 | 1 | 224 | 9.83e-35 | 127 |
| Msa0003490 | AT4G30470.1 | 28.223 | 287 | 172 | 12 | 9 | 282 | 11 | 276 | 1.46e-28 | 112 |
| Msa0003490 | AT2G23910.3 | 26.786 | 280 | 184 | 11 | 9 | 281 | 11 | 276 | 1.90e-27 | 109 |
| Msa0003490 | AT2G23910.2 | 26.978 | 278 | 182 | 11 | 9 | 279 | 11 | 274 | 2.86e-27 | 108 |
| Msa0003490 | AT2G23910.1 | 26.578 | 301 | 198 | 12 | 9 | 300 | 11 | 297 | 3.13e-27 | 109 |
| Msa0003490 | AT4G33360.2 | 28.623 | 276 | 172 | 8 | 8 | 277 | 15 | 271 | 4.61e-22 | 95.1 |
| Msa0003490 | AT5G14700.1 | 29.771 | 262 | 157 | 10 | 8 | 253 | 55 | 305 | 6.19e-22 | 95.5 |
| Msa0003490 | AT4G33360.3 | 28.623 | 276 | 172 | 8 | 8 | 277 | 3 | 259 | 7.06e-22 | 94.7 |
| Msa0003490 | AT4G33360.1 | 28.623 | 276 | 172 | 8 | 8 | 277 | 15 | 271 | 8.05e-22 | 95.1 |
| Msa0003490 | AT5G14700.2 | 31.000 | 200 | 122 | 6 | 8 | 196 | 55 | 249 | 7.42e-19 | 85.9 |
| Msa0003490 | AT2G23910.4 | 25.385 | 260 | 171 | 12 | 50 | 300 | 18 | 263 | 6.54e-18 | 82.8 |
Find 111 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATCTTCAGTAACGTTT+AGG | 0.241553 | 1_1:-6050693 | None:intergenic |
| ATTGATACATGCAGAGAAAA+AGG | 0.247887 | 1_1:+6051688 | Msa0003490:CDS |
| AAAACAGAGAAAATAAAATA+TGG | 0.250230 | 1_1:+6048100 | Msa0003490:exon |
| ATTGGTGCTTTAACAAATTC+AGG | 0.252064 | 1_1:-6051718 | None:intergenic |
| CGGTCAATTCCAACATATAT+AGG | 0.266931 | 1_1:+6052066 | Msa0003490:three_prime_UTR |
| TTCAGTAACGTTTAGGGTTC+CGG | 0.269534 | 1_1:-6050686 | None:intergenic |
| ATGATCAAGCCTACCATAAA+AGG | 0.270848 | 1_1:+6050595 | Msa0003490:CDS |
| CATATTCTTGTTTGAGCATA+TGG | 0.271150 | 1_1:+6051357 | Msa0003490:CDS |
| TGTTTGCGTCACAGGGGCTT+CGG | 0.316160 | 1_1:+6048139 | Msa0003490:CDS |
| TACTCATGTGATGTACGAAT+TGG | 0.335772 | 1_1:-6051938 | None:intergenic |
| GATCATCCAAGTGGACAAAT+TGG | 0.337508 | 1_1:-6051321 | None:intergenic |
| TTGATCTTCAGTAACGTTTA+GGG | 0.340589 | 1_1:-6050692 | None:intergenic |
| TTTGAGCATATGGAAGTAGA+AGG | 0.341082 | 1_1:+6051367 | Msa0003490:CDS |
| GAAGTCCATCTTGTGCTCTT+TGG | 0.342018 | 1_1:-6050976 | None:intergenic |
| GCCGAAACTGTTTGCGTCAC+AGG | 0.351008 | 1_1:+6048131 | Msa0003490:CDS |
| TGTGTGACACCATTACTTAT+TGG | 0.352169 | 1_1:-6051736 | None:intergenic |
| AATCAATCTACGGACAGTTT+TGG | 0.354166 | 1_1:-6050650 | None:intergenic |
| CAAGAATATTCCAGATCAAT+TGG | 0.355555 | 1_1:+6051582 | Msa0003490:CDS |
| CAAAGTGCTAGAATAAATTA+AGG | 0.356605 | 1_1:-6051874 | None:intergenic |
| TTTGCAAGTGGGACTGCATT+TGG | 0.362660 | 1_1:-6051908 | None:intergenic |
| GTTTGCGTCACAGGGGCTTC+GGG | 0.370303 | 1_1:+6048140 | Msa0003490:CDS |
| CCCTGTGACGCAAACAGTTT+CGG | 0.380229 | 1_1:-6048132 | None:intergenic |
| CTTCGGGTTTCATCGGGTCA+TGG | 0.381174 | 1_1:+6048156 | Msa0003490:CDS |
| TGTGTGTCTGTGATGGCTTT+AGG | 0.388446 | 1_1:+6051790 | Msa0003490:three_prime_UTR |
| CTCACAAGCTCCAATTGATC+TGG | 0.389786 | 1_1:-6051592 | None:intergenic |
| ACAGGGGCTTCGGGTTTCAT+CGG | 0.391119 | 1_1:+6048149 | Msa0003490:CDS |
| GTTATCATCAAAACTCTTTG+AGG | 0.396794 | 1_1:-6052126 | None:intergenic |
| TCACTAGAGAAAATAAAATC+AGG | 0.400877 | 1_1:+6048074 | Msa0003490:five_prime_UTR |
| AAACATCAAAACTAACGGTT+TGG | 0.402027 | 1_1:-6052030 | None:intergenic |
| ATCATCCCACCTCTTGTTGT+TGG | 0.405200 | 1_1:+6051005 | Msa0003490:CDS |
| TCACACATAAATAAATATAT+AGG | 0.407180 | 1_1:+6051752 | Msa0003490:exon |
| TTTGTGGGGATATTGTACTC+TGG | 0.409401 | 1_1:-6051457 | None:intergenic |
| TTTATAAATGTACCAGTGAT+AGG | 0.410676 | 1_1:-6051077 | None:intergenic |
| CAAAGAGCAAACTGTCCATT+TGG | 0.411352 | 1_1:+6048469 | Msa0003490:CDS |
| CAGGGGCTTCGGGTTTCATC+GGG | 0.419287 | 1_1:+6048150 | Msa0003490:CDS |
| GCATTAAGTACTTACTTTGT+GGG | 0.426047 | 1_1:-6051472 | None:intergenic |
| TTGTGGGGATATTGTACTCT+GGG | 0.449070 | 1_1:-6051456 | None:intergenic |
| GAAGCAATTAAAGGGTGTAC+TGG | 0.456664 | 1_1:+6048525 | Msa0003490:CDS |
| TATGGGTACCTCAGGGTCCT+TGG | 0.456797 | 1_1:-6048583 | None:intergenic |
| CTTTATGTGTGTGTCTGTGA+TGG | 0.466271 | 1_1:+6051783 | Msa0003490:three_prime_UTR |
| ACTCATGTGATGTACGAATT+GGG | 0.471772 | 1_1:-6051937 | None:intergenic |
| GACAGTTTGCTCTTTGCACC+TGG | 0.475948 | 1_1:-6048462 | None:intergenic |
| GCAAGGCCAATTTGTCCACT+TGG | 0.475951 | 1_1:+6051315 | Msa0003490:CDS |
| TAGGAGAAAGGGCAGTGATT+AGG | 0.477149 | 1_1:-6051058 | None:intergenic |
| ATCAAAGAAGATCAAAGACT+TGG | 0.477770 | 1_1:+6051621 | Msa0003490:CDS |
| GGCATAGTTGGAATAAGAAA+AGG | 0.483517 | 1_1:-6051029 | None:intergenic |
| GCACAAATTTGCAGGAAATG+AGG | 0.483996 | 1_1:+6051273 | Msa0003490:intron |
| ATTAGGCTAGGTGGCATAGT+TGG | 0.487275 | 1_1:-6051041 | None:intergenic |
| AAACAGAGAAAATAAAATAT+GGG | 0.491026 | 1_1:+6048101 | Msa0003490:exon |
| TTGAGCATATGGAAGTAGAA+GGG | 0.498318 | 1_1:+6051368 | Msa0003490:CDS |
| TAACGGTTTGGATGGTTGAA+AGG | 0.498483 | 1_1:-6052018 | None:intergenic |
| CCGAAACTGTTTGCGTCACA+GGG | 0.498950 | 1_1:+6048132 | Msa0003490:CDS |
| AGTCCTTTGTTAGAACTGCC+AGG | 0.502761 | 1_1:+6048444 | Msa0003490:CDS |
| AAAATAAAATATGGGTTCCA+TGG | 0.504913 | 1_1:+6048109 | Msa0003490:exon |
| ACTCATGGAGCGCGGTTACA+TGG | 0.507446 | 1_1:+6048190 | Msa0003490:CDS |
| ATTTGAATTCAAATACAGCT+TGG | 0.508167 | 1_1:+6051645 | Msa0003490:CDS |
| ATGTACCAGTGATAGGAGAA+AGG | 0.508607 | 1_1:-6051070 | None:intergenic |
| GAATGCAGAAAACTTGAAGA+AGG | 0.510219 | 1_1:+6048419 | Msa0003490:intron |
| ATCAAAACTAACGGTTTGGA+TGG | 0.510479 | 1_1:-6052026 | None:intergenic |
| TGTACCAGTGATAGGAGAAA+GGG | 0.510873 | 1_1:-6051069 | None:intergenic |
| TTGATTTACACATCGTCCGC+CGG | 0.512560 | 1_1:+6050667 | Msa0003490:CDS |
| GTTAAAGCACCAATAAGTAA+TGG | 0.513064 | 1_1:+6051727 | Msa0003490:CDS |
| AAAATCAAACCTATATATGT+TGG | 0.513122 | 1_1:-6052075 | None:intergenic |
| CTATATATGTTGGAATTGAC+CGG | 0.514045 | 1_1:-6052065 | None:intergenic |
| ACCAAGGTCAGCCTTCCAAA+TGG | 0.516767 | 1_1:-6048484 | None:intergenic |
| TGAAGATCAAAAGCCCTTGT+GGG | 0.521869 | 1_1:+6050705 | Msa0003490:CDS |
| TCCATTTGGAAGGCTGACCT+TGG | 0.530988 | 1_1:+6048483 | Msa0003490:CDS |
| AAGGCTGACCTTGGTGAAGA+AGG | 0.534105 | 1_1:+6048492 | Msa0003490:CDS |
| TGAATTCAAATACAGCTTGG+AGG | 0.534333 | 1_1:+6051648 | Msa0003490:CDS |
| CTGAAGATCAAAAGCCCTTG+TGG | 0.543581 | 1_1:+6050704 | Msa0003490:CDS |
| ATGGCTTGTCATGAGACTCA+TGG | 0.550625 | 1_1:+6048175 | Msa0003490:CDS |
| GACGCAAACAGTTTCGGCCA+TGG | 0.555179 | 1_1:-6048126 | None:intergenic |
| GGAGAGTGAAGATGACTGGC+TGG | 0.556468 | 1_1:+6050761 | Msa0003490:CDS |
| CATTAAGTACTTACTTTGTG+GGG | 0.557405 | 1_1:-6051471 | None:intergenic |
| CGAGCAACAGTCCGCGACCC+AGG | 0.559232 | 1_1:+6048215 | Msa0003490:CDS |
| CACTTGCGGAGCAAGAAGCA+TGG | 0.562977 | 1_1:+6050946 | Msa0003490:CDS |
| TGCAGGAGAGTGAAGATGAC+TGG | 0.565963 | 1_1:+6050757 | Msa0003490:CDS |
| TCAAAGAAGATCAAAGACTT+GGG | 0.567744 | 1_1:+6051622 | Msa0003490:CDS |
| GAAAGGGCAGTGATTAGGCT+AGG | 0.570840 | 1_1:-6051053 | None:intergenic |
| ATTACTGAGGCGGTTGCACT+AGG | 0.582160 | 1_1:-6051828 | None:intergenic |
| AAAGGACCAACAACAAGAGG+TGG | 0.582880 | 1_1:-6051011 | None:intergenic |
| GAATAAATTAAGGACATGGA+TGG | 0.583007 | 1_1:-6051864 | None:intergenic |
| ACTGCCCTTTCTCCTATCAC+TGG | 0.583168 | 1_1:+6051065 | Msa0003490:CDS |
| GAGCAAACTGTCCATTTGGA+AGG | 0.583763 | 1_1:+6048473 | Msa0003490:CDS |
| CACTAGAGAAAATAAAATCA+GGG | 0.590615 | 1_1:+6048075 | Msa0003490:five_prime_UTR |
| GCTTTAGGATCTTAATTCAG+CGG | 0.600897 | 1_1:+6051805 | Msa0003490:three_prime_UTR |
| AGACAAAACATCAAAACTAA+CGG | 0.603852 | 1_1:-6052035 | None:intergenic |
| ATTTGCCAAAGAGCACAAGA+TGG | 0.605063 | 1_1:+6050971 | Msa0003490:CDS |
| AGAAAAGGACCAACAACAAG+AGG | 0.606682 | 1_1:-6051014 | None:intergenic |
| ATTGGGTCTATATTTGCAAG+TGG | 0.608440 | 1_1:-6051920 | None:intergenic |
| ACGATGTGTAAATCAATCTA+CGG | 0.609135 | 1_1:-6050660 | None:intergenic |
| CATTATTCGATTATAAAGCA+AGG | 0.613434 | 1_1:+6051298 | Msa0003490:CDS |
| GAGAGTGAAGATGACTGGCT+GGG | 0.614181 | 1_1:+6050762 | Msa0003490:CDS |
| TTGGGTCTATATTTGCAAGT+GGG | 0.615110 | 1_1:-6051919 | None:intergenic |
| GCTAGAATAAATTAAGGACA+TGG | 0.616340 | 1_1:-6051868 | None:intergenic |
| AGCATATGGAAGTAGAAGGG+AGG | 0.617663 | 1_1:+6051371 | Msa0003490:CDS |
| CCAACAGCTCTCATCCCACA+AGG | 0.627961 | 1_1:-6050719 | None:intergenic |
| CATCATGAAAGCATGCCTCA+AGG | 0.630278 | 1_1:+6050627 | Msa0003490:CDS |
| TCCTTGGACTCAAAATCCAT+AGG | 0.646498 | 1_1:-6048567 | None:intergenic |
| CCTTGTGGGATGAGAGCTGT+TGG | 0.652347 | 1_1:+6050719 | Msa0003490:CDS |
| AAGGACCAACAACAAGAGGT+GGG | 0.653580 | 1_1:-6051010 | None:intergenic |
| GCACCTGGCAGTTCTAACAA+AGG | 0.664303 | 1_1:-6048447 | None:intergenic |
| AGAAATACGTATTACTGAGG+CGG | 0.681855 | 1_1:-6051838 | None:intergenic |
| AGGGCAGTGATTAGGCTAGG+TGG | 0.683144 | 1_1:-6051050 | None:intergenic |
| CTTCACAAAGATCATCCAAG+TGG | 0.692415 | 1_1:-6051330 | None:intergenic |
| CAACAGCTCTCATCCCACAA+GGG | 0.696587 | 1_1:-6050718 | None:intergenic |
| CGAAACTGTTTGCGTCACAG+GGG | 0.700520 | 1_1:+6048133 | Msa0003490:CDS |
| GTCATGAGACTCATGGAGCG+CGG | 0.701087 | 1_1:+6048182 | Msa0003490:CDS |
| CAAAACTACCTTCTTCACCA+AGG | 0.706268 | 1_1:-6048500 | None:intergenic |
| AGTAACGTTTAGGGTTCCGG+CGG | 0.708151 | 1_1:-6050683 | None:intergenic |
| ACGAGAAATACGTATTACTG+AGG | 0.731334 | 1_1:-6051841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATTAAAAAAATTGT+TGG | - | chr1_1:6048301-6048320 | None:intergenic | 10.0% |
| !!! | TTTTAATACCATTATATATT+TGG | - | chr1_1:6048849-6048868 | None:intergenic | 10.0% |
| !!! | ATAAAAGTGAATTAAAATTT+TGG | + | chr1_1:6049704-6049723 | Msa0003490:intron | 10.0% |
| !!! | ATAAAAGTGAATTAAAATTT+TGG | + | chr1_1:6049704-6049723 | Msa0003490:intron | 10.0% |
| !!! | TTTTTATAAACTTTAGTATA+TGG | - | chr1_1:6049967-6049986 | None:intergenic | 10.0% |
| !!! | AATCTAATCATTTTTTTTTT+TGG | + | chr1_1:6050073-6050092 | Msa0003490:intron | 10.0% |
| !! | TATAATAAAAAATCAGTAAA+AGG | - | chr1_1:6050173-6050192 | None:intergenic | 10.0% |
| !! | TTAAATTATAAAACTCTTAT+AGG | - | chr1_1:6050838-6050857 | None:intergenic | 10.0% |
| !!! | TAATTTAATTTAAAGTGATT+AGG | - | chr1_1:6050867-6050886 | None:intergenic | 10.0% |
| !! | AAAACAGAGAAAATAAAATA+TGG | + | chr1_1:6048100-6048119 | Msa0003490:exon | 15.0% |
| !! | AAACAGAGAAAATAAAATAT+GGG | + | chr1_1:6048101-6048120 | Msa0003490:exon | 15.0% |
| !! | TGCATATAAAATTAAAGTAT+GGG | - | chr1_1:6048603-6048622 | None:intergenic | 15.0% |
| !! | ATGCATATAAAATTAAAGTA+TGG | - | chr1_1:6048604-6048623 | None:intergenic | 15.0% |
| !!! | ATAGATATCTAAGTTTTTTT+TGG | + | chr1_1:6049386-6049405 | Msa0003490:intron | 15.0% |
| !!! | TAGATATCTAAGTTTTTTTT+GGG | + | chr1_1:6049387-6049406 | Msa0003490:intron | 15.0% |
| !!! | TATGTTAAGGAATTTAAAAT+AGG | - | chr1_1:6049532-6049551 | None:intergenic | 15.0% |
| !! | AAAACTATAACTGAAAATTA+TGG | - | chr1_1:6049636-6049655 | None:intergenic | 15.0% |
| !!! | AATTAAAATTTTGGTGATAA+TGG | + | chr1_1:6049713-6049732 | Msa0003490:intron | 15.0% |
| !!! | AATTAAAATTTTGGTGATAA+TGG | + | chr1_1:6049713-6049732 | Msa0003490:intron | 15.0% |
| !!! | TATAGTTTGATTTGTAATTT+TGG | - | chr1_1:6050006-6050025 | None:intergenic | 15.0% |
| !! | AAAAAAATGATTAGATTGTT+AGG | - | chr1_1:6050070-6050089 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTAACTTTTT+AGG | - | chr1_1:6050491-6050510 | None:intergenic | 15.0% |
| !!! | AGTTAAATTTGCTTATATTT+AGG | + | chr1_1:6050495-6050514 | Msa0003490:intron | 15.0% |
| !!! | ATTGTTTAAATTGGATTTTT+AGG | + | chr1_1:6051557-6051576 | Msa0003490:intron | 15.0% |
| !! | TCACACATAAATAAATATAT+AGG | + | chr1_1:6051752-6051771 | Msa0003490:exon | 15.0% |
| !! | AGGTATTAAAAATTGTAAAT+TGG | + | chr1_1:6052150-6052169 | Msa0003490:three_prime_UTR | 15.0% |
| !!! | TTTATTTTCTCTAGTGATTT+TGG | - | chr1_1:6048071-6048090 | None:intergenic | 20.0% |
| !! | AATGTTGCAACATAAAAAAA+GGG | - | chr1_1:6048242-6048261 | None:intergenic | 20.0% |
| !! | AAATGTTGCAACATAAAAAA+AGG | - | chr1_1:6048243-6048262 | None:intergenic | 20.0% |
| !!! | GTTTATATATACACACATTT+TGG | + | chr1_1:6048397-6048416 | Msa0003490:intron | 20.0% |
| !! | GTTATTATCAATGTAGTAAT+GGG | - | chr1_1:6048778-6048797 | None:intergenic | 20.0% |
| !! | CCATTATATATTTGGATTAA+TGG | - | chr1_1:6048841-6048860 | None:intergenic | 20.0% |
| !! | CCATTAATCCAAATATATAA+TGG | + | chr1_1:6048838-6048857 | Msa0003490:intron | 20.0% |
| !! | TGAGCATAATGTAATTTATT+AGG | + | chr1_1:6049123-6049142 | Msa0003490:intron | 20.0% |
| !! | GAGCATAATGTAATTTATTA+GGG | + | chr1_1:6049124-6049143 | Msa0003490:intron | 20.0% |
| !! | AGCATAATGTAATTTATTAG+GGG | + | chr1_1:6049125-6049144 | Msa0003490:intron | 20.0% |
| !!! | TGTCACAACTATTTTTTTAA+AGG | + | chr1_1:6049338-6049357 | Msa0003490:intron | 20.0% |
| !!! | GTCACAACTATTTTTTTAAA+GGG | + | chr1_1:6049339-6049358 | Msa0003490:intron | 20.0% |
| !!! | CCATAAAAAATTTCTAGTTT+TGG | - | chr1_1:6049452-6049471 | None:intergenic | 20.0% |
| !!! | CCAAAACTAGAAATTTTTTA+TGG | + | chr1_1:6049449-6049468 | Msa0003490:intron | 20.0% |
| !!! | TAAGGAATTTAAAATAGGAA+TGG | - | chr1_1:6049527-6049546 | None:intergenic | 20.0% |
| !!! | TTACGTAGATATTTAAAACT+TGG | - | chr1_1:6049582-6049601 | None:intergenic | 20.0% |
| !! | TTATAAACTTTAGTATATGG+TGG | - | chr1_1:6049964-6049983 | None:intergenic | 20.0% |
| !! | ATCTCTTGTGAAAAATTTAT+TGG | + | chr1_1:6050128-6050147 | Msa0003490:intron | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | - | chr1_1:6050398-6050417 | None:intergenic | 20.0% |
| !! | GCTTAAATTCCTTAAAAAAT+TGG | + | chr1_1:6051142-6051161 | Msa0003490:intron | 20.0% |
| !!! | GAATCATTTCCAATTTTTTA+AGG | - | chr1_1:6051154-6051173 | None:intergenic | 20.0% |
| !! | AAAATCAAACCTATATATGT+TGG | - | chr1_1:6052078-6052097 | None:intergenic | 20.0% |
| !!! | ATATATAGGTTTGATTTTGT+TGG | + | chr1_1:6052080-6052099 | Msa0003490:three_prime_UTR | 20.0% |
| ! | TCACTAGAGAAAATAAAATC+AGG | + | chr1_1:6048074-6048093 | Msa0003490:five_prime_UTR | 25.0% |
| ! | CACTAGAGAAAATAAAATCA+GGG | + | chr1_1:6048075-6048094 | Msa0003490:five_prime_UTR | 25.0% |
| ! | AAAATAAAATATGGGTTCCA+TGG | + | chr1_1:6048109-6048128 | Msa0003490:exon | 25.0% |
| ! | TCAAAACTCAAGAAAATTGA+TGG | + | chr1_1:6048374-6048393 | Msa0003490:intron | 25.0% |
| ! | CAAAACTCAAGAAAATTGAT+GGG | + | chr1_1:6048375-6048394 | Msa0003490:intron | 25.0% |
| !!! | AGTTTTGATGAAGCAATTAA+AGG | + | chr1_1:6048516-6048535 | Msa0003490:CDS | 25.0% |
| !!! | GTTTTGATGAAGCAATTAAA+GGG | + | chr1_1:6048517-6048536 | Msa0003490:CDS | 25.0% |
| ! | TCTATCATCTCATATATGAA+TGG | + | chr1_1:6048623-6048642 | Msa0003490:intron | 25.0% |
| ! | GGTTATTATCAATGTAGTAA+TGG | - | chr1_1:6048779-6048798 | None:intergenic | 25.0% |
| ! | AGTAACTACTAAAATGGAAA+CGG | - | chr1_1:6048816-6048835 | None:intergenic | 25.0% |
| ! | AATACATTCAGTAGAAATCA+AGG | + | chr1_1:6049051-6049070 | Msa0003490:intron | 25.0% |
| ! | ATACATTCAGTAGAAATCAA+GGG | + | chr1_1:6049052-6049071 | Msa0003490:intron | 25.0% |
| ! | ACTTCAAATGTTTAATTGAG+AGG | + | chr1_1:6049213-6049232 | Msa0003490:intron | 25.0% |
| ! | AATTCCTTAACATATGTCTT+TGG | + | chr1_1:6049538-6049557 | Msa0003490:intron | 25.0% |
| ! | ATTCCTTAACATATGTCTTT+GGG | + | chr1_1:6049539-6049558 | Msa0003490:intron | 25.0% |
| !!! | TAAAATTTTGGTGATAATGG+TGG | + | chr1_1:6049716-6049735 | Msa0003490:intron | 25.0% |
| !!! | TAAAATTTTGGTGATAATGG+TGG | + | chr1_1:6049716-6049735 | Msa0003490:intron | 25.0% |
| ! | AAGTAAAACAAATGGTTGAT+TGG | + | chr1_1:6049861-6049880 | Msa0003490:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr1_1:6050500-6050519 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr1_1:6050427-6050446 | Msa0003490:intron | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr1_1:6050427-6050446 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr1_1:6050500-6050519 | Msa0003490:intron | 25.0% |
| ! | TTTATAAATGTACCAGTGAT+AGG | - | chr1_1:6051080-6051099 | None:intergenic | 25.0% |
| !! | AATTGTTACTTAGTAGTAGA+CGG | - | chr1_1:6051232-6051251 | None:intergenic | 25.0% |
| ! | CATTATTCGATTATAAAGCA+AGG | + | chr1_1:6051298-6051317 | Msa0003490:CDS | 25.0% |
| ! | GCTTGTCTAATTGTTTAAAT+TGG | + | chr1_1:6051548-6051567 | Msa0003490:intron | 25.0% |
| ! | ATTTGAATTCAAATACAGCT+TGG | + | chr1_1:6051645-6051664 | Msa0003490:CDS | 25.0% |
| !! | CAAAGTGCTAGAATAAATTA+AGG | - | chr1_1:6051877-6051896 | None:intergenic | 25.0% |
| ! | AGACAAAACATCAAAACTAA+CGG | - | chr1_1:6052038-6052057 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGATGTTTTGTCT+AGG | + | chr1_1:6052038-6052057 | Msa0003490:three_prime_UTR | 25.0% |
| !!! | AAAGAGTTTTGATGATAACA+AGG | + | chr1_1:6052130-6052149 | Msa0003490:three_prime_UTR | 25.0% |
| !! | TTTTCTCTAGTGATTTTGGT+TGG | - | chr1_1:6048067-6048086 | None:intergenic | 30.0% |
| ! | GGAAATTCAATATTTTGCGA+GGG | - | chr1_1:6048666-6048685 | None:intergenic | 30.0% |
| ! | TGGAAATTCAATATTTTGCG+AGG | - | chr1_1:6048667-6048686 | None:intergenic | 30.0% |
| AACCTAGTATAACATCCTTT+GGG | + | chr1_1:6048722-6048741 | Msa0003490:intron | 30.0% | |
| GAAAATGATAAACATCCCAA+AGG | - | chr1_1:6048740-6048759 | None:intergenic | 30.0% | |
| TAATGGGATGGTTACAAAAA+AGG | - | chr1_1:6048762-6048781 | None:intergenic | 30.0% | |
| ! | TTATCAATGTAGTAATGGGA+TGG | - | chr1_1:6048774-6048793 | None:intergenic | 30.0% |
| GAAACGGTTCATACATTTAA+TGG | - | chr1_1:6048800-6048819 | None:intergenic | 30.0% | |
| ATGGTGAGTAACTACTAAAA+TGG | - | chr1_1:6048822-6048841 | None:intergenic | 30.0% | |
| AATAATGCTAGTTATCCTGA+TGG | - | chr1_1:6049101-6049120 | None:intergenic | 30.0% | |
| ATGTAATTTATTAGGGGTGA+TGG | + | chr1_1:6049131-6049150 | Msa0003490:intron | 30.0% | |
| !! | ATGGTTTGTTAGATTCTCTA+TGG | + | chr1_1:6049150-6049169 | Msa0003490:intron | 30.0% |
| ! | GAAGTTTTACATAAACTGTG+TGG | - | chr1_1:6049198-6049217 | None:intergenic | 30.0% |
| GAACACAAATAGAACAAAGT+TGG | - | chr1_1:6049254-6049273 | None:intergenic | 30.0% | |
| TTCAACATCATCTAGTGATA+AGG | + | chr1_1:6049271-6049290 | Msa0003490:intron | 30.0% | |
| AAGGGTTAATGACAATGATT+TGG | + | chr1_1:6049357-6049376 | Msa0003490:intron | 30.0% | |
| AGGGTTAATGACAATGATTT+GGG | + | chr1_1:6049358-6049377 | Msa0003490:intron | 30.0% | |
| GAAGTAACAAATGGTTTGAT+TGG | + | chr1_1:6049743-6049762 | Msa0003490:intron | 30.0% | |
| AATAGCCTCTTCATTATTCA+AGG | + | chr1_1:6049793-6049812 | Msa0003490:intron | 30.0% | |
| ATAGCCTCTTCATTATTCAA+GGG | + | chr1_1:6049794-6049813 | Msa0003490:intron | 30.0% | |
| TGGTTGAGAAGTAAAACAAA+TGG | + | chr1_1:6049853-6049872 | Msa0003490:intron | 30.0% | |
| TAAAACAAATGGTTGATTGG+TGG | + | chr1_1:6049864-6049883 | Msa0003490:intron | 30.0% | |
| AATAGCCTCTTCATTATTCA+AGG | + | chr1_1:6049793-6049812 | Msa0003490:intron | 30.0% | |
| ATAGCCTCTTCATTATTCAA+GGG | + | chr1_1:6049794-6049813 | Msa0003490:intron | 30.0% | |
| TATATTTATAGCTACCCAGT+GGG | - | chr1_1:6050269-6050288 | None:intergenic | 30.0% | |
| ATATATTTATAGCTACCCAG+TGG | - | chr1_1:6050270-6050289 | None:intergenic | 30.0% | |
| AGTAGTGGTGTAAAACAATA+TGG | + | chr1_1:6050314-6050333 | Msa0003490:intron | 30.0% | |
| ACGATGTGTAAATCAATCTA+CGG | - | chr1_1:6050663-6050682 | None:intergenic | 30.0% | |
| TTGATCTTCAGTAACGTTTA+GGG | - | chr1_1:6050695-6050714 | None:intergenic | 30.0% | |
| TTTGATCTTCAGTAACGTTT+AGG | - | chr1_1:6050696-6050715 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTCTAAGACACTTG+CGG | + | chr1_1:6050932-6050951 | Msa0003490:CDS | 30.0% |
| ACAATTGATCGAAGATAACA+TGG | + | chr1_1:6051246-6051265 | Msa0003490:intron | 30.0% | |
| ! | CATATTCTTGTTTGAGCATA+TGG | + | chr1_1:6051357-6051376 | Msa0003490:CDS | 30.0% |
| CATTAAGTACTTACTTTGTG+GGG | - | chr1_1:6051474-6051493 | None:intergenic | 30.0% | |
| GCATTAAGTACTTACTTTGT+GGG | - | chr1_1:6051475-6051494 | None:intergenic | 30.0% | |
| AGCATTAAGTACTTACTTTG+TGG | - | chr1_1:6051476-6051495 | None:intergenic | 30.0% | |
| CAAGAATATTCCAGATCAAT+TGG | + | chr1_1:6051582-6051601 | Msa0003490:CDS | 30.0% | |
| ATCAAAGAAGATCAAAGACT+TGG | + | chr1_1:6051621-6051640 | Msa0003490:CDS | 30.0% | |
| TCAAAGAAGATCAAAGACTT+GGG | + | chr1_1:6051622-6051641 | Msa0003490:CDS | 30.0% | |
| ATTGATACATGCAGAGAAAA+AGG | + | chr1_1:6051688-6051707 | Msa0003490:CDS | 30.0% | |
| TTGATACATGCAGAGAAAAA+GGG | + | chr1_1:6051689-6051708 | Msa0003490:CDS | 30.0% | |
| ! | ATTGGTGCTTTAACAAATTC+AGG | - | chr1_1:6051721-6051740 | None:intergenic | 30.0% |
| ! | GTTAAAGCACCAATAAGTAA+TGG | + | chr1_1:6051727-6051746 | Msa0003490:CDS | 30.0% |
| GAATAAATTAAGGACATGGA+TGG | - | chr1_1:6051867-6051886 | None:intergenic | 30.0% | |
| GCTAGAATAAATTAAGGACA+TGG | - | chr1_1:6051871-6051890 | None:intergenic | 30.0% | |
| AAACATCAAAACTAACGGTT+TGG | - | chr1_1:6052033-6052052 | None:intergenic | 30.0% | |
| CTATATATGTTGGAATTGAC+CGG | - | chr1_1:6052068-6052087 | None:intergenic | 30.0% | |
| GTTATCATCAAAACTCTTTG+AGG | - | chr1_1:6052129-6052148 | None:intergenic | 30.0% | |
| CAACATAAAAAAAGGGACCT+GGG | - | chr1_1:6048235-6048254 | None:intergenic | 35.0% | |
| GAATGCAGAAAACTTGAAGA+AGG | + | chr1_1:6048419-6048438 | Msa0003490:intron | 35.0% | |
| ATTAAAGTATGGGTACCTCA+GGG | - | chr1_1:6048593-6048612 | None:intergenic | 35.0% | |
| AATTAAAGTATGGGTACCTC+AGG | - | chr1_1:6048594-6048613 | None:intergenic | 35.0% | |
| CACTATGAAGCAATGTTCTT+TGG | - | chr1_1:6048687-6048706 | None:intergenic | 35.0% | |
| CAACCTAGTATAACATCCTT+TGG | + | chr1_1:6048721-6048740 | Msa0003490:intron | 35.0% | |
| ATCCCAAAGGATGTTATACT+AGG | - | chr1_1:6048727-6048746 | None:intergenic | 35.0% | |
| ! | GTTTGTTAGATTCTCTATGG+TGG | + | chr1_1:6049153-6049172 | Msa0003490:intron | 35.0% |
| TAGTGATAAGGACAGTGAAT+AGG | + | chr1_1:6049283-6049302 | Msa0003490:intron | 35.0% | |
| TGTCCCAAAGACATATGTTA+AGG | - | chr1_1:6049545-6049564 | None:intergenic | 35.0% | |
| CTACGTAAATGAGATTGAGA+TGG | + | chr1_1:6049594-6049613 | Msa0003490:intron | 35.0% | |
| GTAACAAATGGTTTGATTGG+TGG | + | chr1_1:6049746-6049765 | Msa0003490:intron | 35.0% | |
| TAGCCTCTTCATTATTCAAG+GGG | + | chr1_1:6049795-6049814 | Msa0003490:intron | 35.0% | |
| AATCCCCTTGAATAATGAAG+AGG | - | chr1_1:6049801-6049820 | None:intergenic | 35.0% | |
| TAGCCTCTTCATTATTCAAG+GGG | + | chr1_1:6049795-6049814 | Msa0003490:intron | 35.0% | |
| AATCCCCTTGAATAATGAAG+AGG | - | chr1_1:6049801-6049820 | None:intergenic | 35.0% | |
| CTTCTGCAAAAAGAAATGTG+TGG | + | chr1_1:6050200-6050219 | Msa0003490:intron | 35.0% | |
| GATGTATGTGGTCCATATTA+TGG | + | chr1_1:6050439-6050458 | Msa0003490:intron | 35.0% | |
| GATGTATGTGGTCCATAATA+TGG | - | chr1_1:6050454-6050473 | None:intergenic | 35.0% | |
| ! | AGGGAGTATAACAATATGGT+TGG | + | chr1_1:6050523-6050542 | Msa0003490:intron | 35.0% |
| ! | GGGAGTATAACAATATGGTT+GGG | + | chr1_1:6050524-6050543 | Msa0003490:intron | 35.0% |
| ATGATCAAGCCTACCATAAA+AGG | + | chr1_1:6050595-6050614 | Msa0003490:CDS | 35.0% | |
| ! | AATCAATCTACGGACAGTTT+TGG | - | chr1_1:6050653-6050672 | None:intergenic | 35.0% |
| GGCATAGTTGGAATAAGAAA+AGG | - | chr1_1:6051032-6051051 | None:intergenic | 35.0% | |
| !! | ATGGTTTTGCACAAATTTGC+AGG | + | chr1_1:6051265-6051284 | Msa0003490:intron | 35.0% |
| TTTGAGCATATGGAAGTAGA+AGG | + | chr1_1:6051367-6051386 | Msa0003490:CDS | 35.0% | |
| TTGAGCATATGGAAGTAGAA+GGG | + | chr1_1:6051368-6051387 | Msa0003490:CDS | 35.0% | |
| TGAATTCAAATACAGCTTGG+AGG | + | chr1_1:6051648-6051667 | Msa0003490:CDS | 35.0% | |
| TGTGTGACACCATTACTTAT+TGG | - | chr1_1:6051739-6051758 | None:intergenic | 35.0% | |
| !! | GCTTTAGGATCTTAATTCAG+CGG | + | chr1_1:6051805-6051824 | Msa0003490:three_prime_UTR | 35.0% |
| AGAAATACGTATTACTGAGG+CGG | - | chr1_1:6051841-6051860 | None:intergenic | 35.0% | |
| ACGAGAAATACGTATTACTG+AGG | - | chr1_1:6051844-6051863 | None:intergenic | 35.0% | |
| TTGGGTCTATATTTGCAAGT+GGG | - | chr1_1:6051922-6051941 | None:intergenic | 35.0% | |
| ATTGGGTCTATATTTGCAAG+TGG | - | chr1_1:6051923-6051942 | None:intergenic | 35.0% | |
| ACTCATGTGATGTACGAATT+GGG | - | chr1_1:6051940-6051959 | None:intergenic | 35.0% | |
| TACTCATGTGATGTACGAAT+TGG | - | chr1_1:6051941-6051960 | None:intergenic | 35.0% | |
| ! | ATCAAAACTAACGGTTTGGA+TGG | - | chr1_1:6052029-6052048 | None:intergenic | 35.0% |
| CGGTCAATTCCAACATATAT+AGG | + | chr1_1:6052066-6052085 | Msa0003490:three_prime_UTR | 35.0% | |
| !!! | TCTAGTGATTTTGGTTGGCT+TGG | - | chr1_1:6048062-6048081 | None:intergenic | 40.0% |
| GCAACATAAAAAAAGGGACC+TGG | - | chr1_1:6048236-6048255 | None:intergenic | 40.0% | |
| CAAAGAGCAAACTGTCCATT+TGG | + | chr1_1:6048469-6048488 | Msa0003490:CDS | 40.0% | |
| CAAAACTACCTTCTTCACCA+AGG | - | chr1_1:6048503-6048522 | None:intergenic | 40.0% | |
| ! | GAAGCAATTAAAGGGTGTAC+TGG | + | chr1_1:6048525-6048544 | Msa0003490:CDS | 40.0% |
| ! | GTGTACTGGAGTTTTTCATG+TGG | + | chr1_1:6048539-6048558 | Msa0003490:CDS | 40.0% |
| ! | TTTTCATGTGGCTACACCTA+TGG | + | chr1_1:6048551-6048570 | Msa0003490:CDS | 40.0% |
| !! | ACCTATGGATTTTGAGTCCA+AGG | + | chr1_1:6048566-6048585 | Msa0003490:CDS | 40.0% |
| TCCTTGGACTCAAAATCCAT+AGG | - | chr1_1:6048570-6048589 | None:intergenic | 40.0% | |
| TAAATTAGTCGTGATCCCGT+CGG | - | chr1_1:6048952-6048971 | None:intergenic | 40.0% | |
| ! | ATTTCGCTAGCTTATCCATC+AGG | + | chr1_1:6049083-6049102 | Msa0003490:intron | 40.0% |
| ! | TCTTGTTATCTTGTGCCCTT+AGG | + | chr1_1:6049410-6049429 | Msa0003490:intron | 40.0% |
| ! | CTTGTTATCTTGTGCCCTTA+GGG | + | chr1_1:6049411-6049430 | Msa0003490:intron | 40.0% |
| !! | TTCCTTAACTTGTGCCCTAA+GGG | - | chr1_1:6049428-6049447 | None:intergenic | 40.0% |
| !! | ATTCCTTAACTTGTGCCCTA+AGG | - | chr1_1:6049429-6049448 | None:intergenic | 40.0% |
| GGTGGTTGAGAAGTAACAAA+TGG | + | chr1_1:6049734-6049753 | Msa0003490:intron | 40.0% | |
| ACAAGAGATGATCAGTGTTC+AGG | - | chr1_1:6050117-6050136 | None:intergenic | 40.0% | |
| TTGTGCACGATCTTAAGTAG+TGG | + | chr1_1:6050299-6050318 | Msa0003490:intron | 40.0% | |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr1_1:6050504-6050523 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr1_1:6050503-6050522 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr1_1:6050503-6050522 | Msa0003490:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr1_1:6050504-6050523 | Msa0003490:intron | 40.0% |
| CCATATTGTTATACTCCCTC+CGG | - | chr1_1:6050522-6050541 | None:intergenic | 40.0% | |
| ! | TCTAGCACTCCTTTTATGGT+AGG | - | chr1_1:6050607-6050626 | None:intergenic | 40.0% |
| ! | GATGTCTAGCACTCCTTTTA+TGG | - | chr1_1:6050611-6050630 | None:intergenic | 40.0% |
| ! | TTCAGTAACGTTTAGGGTTC+CGG | - | chr1_1:6050689-6050708 | None:intergenic | 40.0% |
| TGAAGATCAAAAGCCCTTGT+GGG | + | chr1_1:6050705-6050724 | Msa0003490:CDS | 40.0% | |
| ! | ATTTGCCAAAGAGCACAAGA+TGG | + | chr1_1:6050971-6050990 | Msa0003490:CDS | 40.0% |
| AGAAAAGGACCAACAACAAG+AGG | - | chr1_1:6051017-6051036 | None:intergenic | 40.0% | |
| TGTACCAGTGATAGGAGAAA+GGG | - | chr1_1:6051072-6051091 | None:intergenic | 40.0% | |
| ATGTACCAGTGATAGGAGAA+AGG | - | chr1_1:6051073-6051092 | None:intergenic | 40.0% | |
| ! | TGTTACTTAGTAGTAGACGG+TGG | - | chr1_1:6051229-6051248 | None:intergenic | 40.0% |
| GCACAAATTTGCAGGAAATG+AGG | + | chr1_1:6051273-6051292 | Msa0003490:intron | 40.0% | |
| GATCATCCAAGTGGACAAAT+TGG | - | chr1_1:6051324-6051343 | None:intergenic | 40.0% | |
| CTTCACAAAGATCATCCAAG+TGG | - | chr1_1:6051333-6051352 | None:intergenic | 40.0% | |
| TTGTGGGGATATTGTACTCT+GGG | - | chr1_1:6051459-6051478 | None:intergenic | 40.0% | |
| TTTGTGGGGATATTGTACTC+TGG | - | chr1_1:6051460-6051479 | None:intergenic | 40.0% | |
| CTTTATGTGTGTGTCTGTGA+TGG | + | chr1_1:6051783-6051802 | Msa0003490:three_prime_UTR | 40.0% | |
| ! | TAACGGTTTGGATGGTTGAA+AGG | - | chr1_1:6052021-6052040 | None:intergenic | 40.0% |
| ! | GATGTTTTGTCTAGGCTTTC+CGG | + | chr1_1:6052046-6052065 | Msa0003490:three_prime_UTR | 40.0% |
| ! | ATGGCTTGTCATGAGACTCA+TGG | + | chr1_1:6048175-6048194 | Msa0003490:CDS | 45.0% |
| AGTCCTTTGTTAGAACTGCC+AGG | + | chr1_1:6048444-6048463 | Msa0003490:CDS | 45.0% | |
| GAGCAAACTGTCCATTTGGA+AGG | + | chr1_1:6048473-6048492 | Msa0003490:CDS | 45.0% | |
| AAATTAGTCGTGATCCCGTC+GGG | - | chr1_1:6048951-6048970 | None:intergenic | 45.0% | |
| TTCGTTCCTTCCACGATTCA+AGG | + | chr1_1:6048984-6049003 | Msa0003490:intron | 45.0% | |
| TCGTTCCTTCCACGATTCAA+GGG | + | chr1_1:6048985-6049004 | Msa0003490:intron | 45.0% | |
| AGGACAGTGAATAGGTACCT+AGG | + | chr1_1:6049291-6049310 | Msa0003490:intron | 45.0% | |
| ACAGTGAATAGGTACCTAGG+TGG | + | chr1_1:6049294-6049313 | Msa0003490:intron | 45.0% | |
| ! | TGGCAAAGATGGTGATGACA+TGG | + | chr1_1:6049314-6049333 | Msa0003490:intron | 45.0% |
| TTGTGCACGATCTTGAGTAC+AGG | + | chr1_1:6050357-6050376 | Msa0003490:intron | 45.0% | |
| ! | CCGGAGGGAGTATAACAATA+TGG | + | chr1_1:6050519-6050538 | Msa0003490:intron | 45.0% |
| GTTGGGAATCGAGTCTGAAA+TGG | + | chr1_1:6050541-6050560 | Msa0003490:intron | 45.0% | |
| ! | CATCATGAAAGCATGCCTCA+AGG | + | chr1_1:6050627-6050646 | Msa0003490:CDS | 45.0% |
| TTGATTTACACATCGTCCGC+CGG | + | chr1_1:6050667-6050686 | Msa0003490:CDS | 45.0% | |
| CTGAAGATCAAAAGCCCTTG+TGG | + | chr1_1:6050704-6050723 | Msa0003490:CDS | 45.0% | |
| ! | GGAGTGATGTTGAGTTTTGC+AGG | + | chr1_1:6050740-6050759 | Msa0003490:CDS | 45.0% |
| GAAGTCCATCTTGTGCTCTT+TGG | - | chr1_1:6050979-6050998 | None:intergenic | 45.0% | |
| ! | ATCATCCCACCTCTTGTTGT+TGG | + | chr1_1:6051005-6051024 | Msa0003490:CDS | 45.0% |
| AAGGACCAACAACAAGAGGT+GGG | - | chr1_1:6051013-6051032 | None:intergenic | 45.0% | |
| AAAGGACCAACAACAAGAGG+TGG | - | chr1_1:6051014-6051033 | None:intergenic | 45.0% | |
| ATTAGGCTAGGTGGCATAGT+TGG | - | chr1_1:6051044-6051063 | None:intergenic | 45.0% | |
| TAGGAGAAAGGGCAGTGATT+AGG | - | chr1_1:6051061-6051080 | None:intergenic | 45.0% | |
| AGCATATGGAAGTAGAAGGG+AGG | + | chr1_1:6051371-6051390 | Msa0003490:CDS | 45.0% | |
| CTCACAAGCTCCAATTGATC+TGG | - | chr1_1:6051595-6051614 | None:intergenic | 45.0% | |
| TGTGTGTCTGTGATGGCTTT+AGG | + | chr1_1:6051790-6051809 | Msa0003490:three_prime_UTR | 45.0% | |
| TTTGCAAGTGGGACTGCATT+TGG | - | chr1_1:6051911-6051930 | None:intergenic | 45.0% | |
| CCCTGTGACGCAAACAGTTT+CGG | - | chr1_1:6048135-6048154 | None:intergenic | 50.0% | |
| CCGAAACTGTTTGCGTCACA+GGG | + | chr1_1:6048132-6048151 | Msa0003490:CDS | 50.0% | |
| CGAAACTGTTTGCGTCACAG+GGG | + | chr1_1:6048133-6048152 | Msa0003490:CDS | 50.0% | |
| AAAAAAAGGGACCTGGGTCG+CGG | - | chr1_1:6048229-6048248 | None:intergenic | 50.0% | |
| ! | GCACCTGGCAGTTCTAACAA+AGG | - | chr1_1:6048450-6048469 | None:intergenic | 50.0% |
| ! | GACAGTTTGCTCTTTGCACC+TGG | - | chr1_1:6048465-6048484 | None:intergenic | 50.0% |
| TCCATTTGGAAGGCTGACCT+TGG | + | chr1_1:6048483-6048502 | Msa0003490:CDS | 50.0% | |
| ACCAAGGTCAGCCTTCCAAA+TGG | - | chr1_1:6048487-6048506 | None:intergenic | 50.0% | |
| AAGGCTGACCTTGGTGAAGA+AGG | + | chr1_1:6048492-6048511 | Msa0003490:CDS | 50.0% | |
| !! | TTTTGAGTCCAAGGACCCTG+AGG | + | chr1_1:6048575-6048594 | Msa0003490:CDS | 50.0% |
| CCGTCGGGATAAATTGCTTC+GGG | - | chr1_1:6048936-6048955 | None:intergenic | 50.0% | |
| CCCGAAGCAATTTATCCCGA+CGG | + | chr1_1:6048933-6048952 | Msa0003490:intron | 50.0% | |
| CCCGTCGGGATAAATTGCTT+CGG | - | chr1_1:6048937-6048956 | None:intergenic | 50.0% | |
| CCGAAGCAATTTATCCCGAC+GGG | + | chr1_1:6048934-6048953 | Msa0003490:intron | 50.0% | |
| TTCCTTCCACGATTCAAGGG+AGG | + | chr1_1:6048988-6049007 | Msa0003490:intron | 50.0% | |
| !! | AAGGGAGGTGCCACAATACA+AGG | + | chr1_1:6049003-6049022 | Msa0003490:intron | 50.0% |
| !! | AGGGAGGTGCCACAATACAA+GGG | + | chr1_1:6049004-6049023 | Msa0003490:intron | 50.0% |
| ! | AGGTGCCACAATACAAGGGA+GGG | + | chr1_1:6049008-6049027 | Msa0003490:intron | 50.0% |
| AGGTACCTAGGTGGCAAAGA+TGG | + | chr1_1:6049303-6049322 | Msa0003490:intron | 50.0% | |
| CATCACCATCTTTGCCACCT+AGG | - | chr1_1:6049311-6049330 | None:intergenic | 50.0% | |
| TGCCCTTAGGGCACAAGTTA+AGG | + | chr1_1:6049423-6049442 | Msa0003490:intron | 50.0% | |
| ! | AGAGAGGATTTGCTCCCACT+GGG | + | chr1_1:6050252-6050271 | Msa0003490:intron | 50.0% |
| !!! | TACGGACAGTTTTGGCCTTG+AGG | - | chr1_1:6050645-6050664 | None:intergenic | 50.0% |
| ! | AGTAACGTTTAGGGTTCCGG+CGG | - | chr1_1:6050686-6050705 | None:intergenic | 50.0% |
| CAACAGCTCTCATCCCACAA+GGG | - | chr1_1:6050721-6050740 | None:intergenic | 50.0% | |
| TGCAGGAGAGTGAAGATGAC+TGG | + | chr1_1:6050757-6050776 | Msa0003490:CDS | 50.0% | |
| ! | GAGAGTGAAGATGACTGGCT+GGG | + | chr1_1:6050762-6050781 | Msa0003490:CDS | 50.0% |
| GAAAGGGCAGTGATTAGGCT+AGG | - | chr1_1:6051056-6051075 | None:intergenic | 50.0% | |
| ACTGCCCTTTCTCCTATCAC+TGG | + | chr1_1:6051065-6051084 | Msa0003490:CDS | 50.0% | |
| GCAAGGCCAATTTGTCCACT+TGG | + | chr1_1:6051315-6051334 | Msa0003490:CDS | 50.0% | |
| ATTACTGAGGCGGTTGCACT+AGG | - | chr1_1:6051831-6051850 | None:intergenic | 50.0% | |
| GACGCAAACAGTTTCGGCCA+TGG | - | chr1_1:6048129-6048148 | None:intergenic | 55.0% | |
| GCCGAAACTGTTTGCGTCAC+AGG | + | chr1_1:6048131-6048150 | Msa0003490:CDS | 55.0% | |
| TGTTTGCGTCACAGGGGCTT+CGG | + | chr1_1:6048139-6048158 | Msa0003490:CDS | 55.0% | |
| ! | ACAGGGGCTTCGGGTTTCAT+CGG | + | chr1_1:6048149-6048168 | Msa0003490:CDS | 55.0% |
| ! | CTTCGGGTTTCATCGGGTCA+TGG | + | chr1_1:6048156-6048175 | Msa0003490:CDS | 55.0% |
| GTCATGAGACTCATGGAGCG+CGG | + | chr1_1:6048182-6048201 | Msa0003490:CDS | 55.0% | |
| ACTCATGGAGCGCGGTTACA+TGG | + | chr1_1:6048190-6048209 | Msa0003490:CDS | 55.0% | |
| TATGGGTACCTCAGGGTCCT+TGG | - | chr1_1:6048586-6048605 | None:intergenic | 55.0% | |
| CACCTCCCTTGAATCGTGGA+AGG | - | chr1_1:6048993-6049012 | None:intergenic | 55.0% | |
| ! | GAGGTGCCACAATACAAGGG+AGG | + | chr1_1:6049007-6049026 | Msa0003490:intron | 55.0% |
| GTCTGCCCTCCCTTGTATTG+TGG | - | chr1_1:6049016-6049035 | None:intergenic | 55.0% | |
| GCAAACACTCTCCACGAGAG+AGG | + | chr1_1:6050236-6050255 | Msa0003490:intron | 55.0% | |
| TGGGAGCAAATCCTCTCTCG+TGG | - | chr1_1:6050250-6050269 | None:intergenic | 55.0% | |
| ! | GAGAGAGGATTTGCTCCCAC+TGG | + | chr1_1:6050251-6050270 | Msa0003490:intron | 55.0% |
| GAGTACAGGTGTACTCCCTC+CGG | + | chr1_1:6050371-6050390 | Msa0003490:intron | 55.0% | |
| CCAACAGCTCTCATCCCACA+AGG | - | chr1_1:6050722-6050741 | None:intergenic | 55.0% | |
| CCTTGTGGGATGAGAGCTGT+TGG | + | chr1_1:6050719-6050738 | Msa0003490:CDS | 55.0% | |
| GGAGAGTGAAGATGACTGGC+TGG | + | chr1_1:6050761-6050780 | Msa0003490:CDS | 55.0% | |
| CACTTGCGGAGCAAGAAGCA+TGG | + | chr1_1:6050946-6050965 | Msa0003490:CDS | 55.0% | |
| AGGGCAGTGATTAGGCTAGG+TGG | - | chr1_1:6051053-6051072 | None:intergenic | 55.0% | |
| GTTTGCGTCACAGGGGCTTC+GGG | + | chr1_1:6048140-6048159 | Msa0003490:CDS | 60.0% | |
| ! | CAGGGGCTTCGGGTTTCATC+GGG | + | chr1_1:6048150-6048169 | Msa0003490:CDS | 60.0% |
| GTGGCACCTCCCTTGAATCG+TGG | - | chr1_1:6048997-6049016 | None:intergenic | 60.0% | |
| CGAGCAACAGTCCGCGACCC+AGG | + | chr1_1:6048215-6048234 | Msa0003490:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6048052 | 6052210 | 6048052 | ID=Msa0003490;Name=Msa0003490 |
| chr1_1 | mRNA | 6048052 | 6052210 | 6048052 | ID=Msa0003490-mRNA-1;Parent=Msa0003490;Name=Msa0003490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=67|1|1|1|1|1|6|445|340 |
| chr1_1 | exon | 6048052 | 6048236 | 6048052 | ID=Msa0003490-mRNA-1:exon:1918;Parent=Msa0003490-mRNA-1 |
| chr1_1 | exon | 6048427 | 6048596 | 6048427 | ID=Msa0003490-mRNA-1:exon:1919;Parent=Msa0003490-mRNA-1 |
| chr1_1 | exon | 6050589 | 6050783 | 6050589 | ID=Msa0003490-mRNA-1:exon:1920;Parent=Msa0003490-mRNA-1 |
| chr1_1 | exon | 6050927 | 6051086 | 6050927 | ID=Msa0003490-mRNA-1:exon:1921;Parent=Msa0003490-mRNA-1 |
| chr1_1 | exon | 6051287 | 6051479 | 6051287 | ID=Msa0003490-mRNA-1:exon:1922;Parent=Msa0003490-mRNA-1 |
| chr1_1 | exon | 6051579 | 6052210 | 6051579 | ID=Msa0003490-mRNA-1:exon:1923;Parent=Msa0003490-mRNA-1 |
| chr1_1 | five_prime_UTR | 6048052 | 6048118 | 6048052 | ID=Msa0003490-mRNA-1:five_prime_utr;Parent=Msa0003490-mRNA-1 |
| chr1_1 | CDS | 6048119 | 6048236 | 6048119 | ID=Msa0003490-mRNA-1:cds;Parent=Msa0003490-mRNA-1 |
| chr1_1 | CDS | 6048427 | 6048596 | 6048427 | ID=Msa0003490-mRNA-1:cds;Parent=Msa0003490-mRNA-1 |
| chr1_1 | CDS | 6050589 | 6050783 | 6050589 | ID=Msa0003490-mRNA-1:cds;Parent=Msa0003490-mRNA-1 |
| chr1_1 | CDS | 6050927 | 6051086 | 6050927 | ID=Msa0003490-mRNA-1:cds;Parent=Msa0003490-mRNA-1 |
| chr1_1 | CDS | 6051287 | 6051479 | 6051287 | ID=Msa0003490-mRNA-1:cds;Parent=Msa0003490-mRNA-1 |
| chr1_1 | CDS | 6051579 | 6051765 | 6051579 | ID=Msa0003490-mRNA-1:cds;Parent=Msa0003490-mRNA-1 |
| chr1_1 | three_prime_UTR | 6051766 | 6052210 | 6051766 | ID=Msa0003490-mRNA-1:three_prime_utr;Parent=Msa0003490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
