AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217170 MtrunA17_Chr4g0066611 98.187 717 11 1 1 715 1 717 0.0 1454
Msa1217170 MtrunA17_Chr2g0286641 80.714 700 130 2 16 715 21 715 0.0 1158
Msa1217170 MtrunA17_Chr8g0367181 72.043 651 182 0 61 711 58 708 0.0 1009
Msa1217170 MtrunA17_Chr8g0367201 71.736 651 184 0 61 711 58 708 0.0 1009
Msa1217170 MtrunA17_Chr3g0138171 59.574 705 275 5 11 714 11 706 0.0 830
Msa1217170 MtrunA17_Chr7g0214101 25.091 275 186 7 385 642 19 290 5.15e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217170 AT4G15560.1 86.289 671 92 0 41 711 46 716 0.0 1214
Msa1217170 AT3G21500.3 74.262 711 134 4 1 711 13 674 0.0 1072
Msa1217170 AT3G21500.2 74.324 666 122 4 1 666 13 629 0.0 1002
Msa1217170 AT3G21500.1 74.174 666 122 5 1 666 13 628 0.0 996
Msa1217170 AT5G11380.1 56.515 683 270 8 35 715 43 700 0.0 763
Msa1217170 AT5G11380.3 53.114 546 229 8 35 578 43 563 0.0 562
Msa1217170 AT5G11380.2 54.269 527 215 7 35 559 43 545 0.0 558
Msa1217170 AT5G11380.4 54.369 515 209 7 35 547 43 533 0.0 543
Msa1217170 AT5G50850.1 25.088 283 192 7 377 642 19 298 8.94e-12 67.8

Find 195 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTATTATAATATTAT+TGG 0.135713 8_1:-79407179 None:intergenic
GGACTGGAGAATTGAAATTA+TGG 0.234238 8_1:-79407122 None:intergenic
TCGGAACTTCAGCAAAATTA+TGG 0.235014 8_1:-79411385 None:intergenic
GAAGGATCAATTGGAGGATT+TGG 0.241782 8_1:+79410883 Msa1217170:CDS
AAGCGATACCGTTCAAATTT+CGG 0.245290 8_1:-79411579 None:intergenic
AATGATGTAGTTGCTGTTAT+TGG 0.259454 8_1:+79408622 Msa1217170:CDS
TTCTCATGTTGCTCAGTTCA+TGG 0.260981 8_1:+79410906 Msa1217170:CDS
AGGAAGAAGAAGTGTTCTTC+TGG 0.261298 8_1:-79407397 None:intergenic
GATCCATAACAAACAGAAAA+TGG 0.262473 8_1:-79407332 None:intergenic
ATCCATGTTATCACCGAAAA+AGG 0.271169 8_1:+79409145 Msa1217170:CDS
TTACCAACTGCTACTCTTGA+TGG 0.271724 8_1:+79408748 Msa1217170:CDS
CTTCTTCTTCTCACTCTCAA+TGG 0.274761 8_1:+79407418 Msa1217170:CDS
ATAAAATACTTACTGGTAGA+AGG 0.289805 8_1:+79408103 Msa1217170:CDS
GAGAGTGAATATGATTCTTT+TGG 0.294675 8_1:+79408183 Msa1217170:CDS
CTGTCCATTGCAAATCTTAC+AGG 0.302421 8_1:-79410065 None:intergenic
CGGCTGACCCGTAGCCCAAT+AGG 0.305029 8_1:-79410717 None:intergenic
GAATAGTCCAAGACAAAATA+AGG 0.322569 8_1:-79411661 None:intergenic
GCTCAGTTCATGGCCCTTGA+TGG 0.326804 8_1:+79410916 Msa1217170:CDS
TTCTTCTTCTCACTCTCAAT+GGG 0.333491 8_1:+79407419 Msa1217170:CDS
GGACATTTAGGTTCAAGTTT+AGG 0.343066 8_1:+79407886 Msa1217170:CDS
GATAATATCTTTGTCAGCTT+TGG 0.345890 8_1:-79409458 None:intergenic
TTGTTATTCTACCTGGTCAT+AGG 0.354959 8_1:-79409656 None:intergenic
TATAATATTATTGGTTAAGA+AGG 0.358991 8_1:-79407170 None:intergenic
AGACAGACTAATGGGTTATC+TGG 0.360543 8_1:+79408144 Msa1217170:CDS
GATGAGTATATTGCACAAAA+AGG 0.361483 8_1:-79409619 None:intergenic
TATCCTCATAAAATACTTAC+TGG 0.370362 8_1:+79408096 Msa1217170:CDS
TTATATTATATATAGTAGTA+TGG 0.374338 8_1:-79407206 None:intergenic
GAGAATTGAAATTATGGGTT+GGG 0.376880 8_1:-79407116 None:intergenic
GGAGCCATCACCACCATGTT+GGG 0.392304 8_1:-79410158 None:intergenic
TACTATATCGGTCCTGTTGA+TGG 0.393097 8_1:+79409052 Msa1217170:CDS
ACCTCTCTCAATTCTCTAAG+AGG 0.402113 8_1:-79408829 None:intergenic
TTCCGATACCCGAGGGGAAA+TGG 0.408784 8_1:+79410248 Msa1217170:CDS
AGGAGAAAGAGTAGCCCTAT+TGG 0.409345 8_1:+79410702 Msa1217170:CDS
TAGGGAGTAACAAAACGAAT+TGG 0.410575 8_1:+79408935 Msa1217170:intron
TCGATCCTTGATTCGCAGTC+TGG 0.418420 8_1:+79410828 Msa1217170:CDS
TCATGCTTCACTTTCTGAGA+TGG 0.428620 8_1:+79407503 Msa1217170:CDS
TTGTCAAATAGTTGCATGTA+TGG 0.431670 8_1:+79411332 Msa1217170:three_prime_UTR
CATGCTTCACTTTCTGAGAT+GGG 0.434339 8_1:+79407504 Msa1217170:CDS
ACCGTAGAAGAAGGATCAAT+TGG 0.435054 8_1:+79410874 Msa1217170:CDS
CAAAGCATCTTGTTGGGAAT+CGG 0.442480 8_1:-79409531 None:intergenic
TTTAACAGATTGGGAAAGGT+AGG 0.444040 8_1:+79410668 Msa1217170:intron
GAGCTTGGACTCTACTATAT+CGG 0.444711 8_1:+79409040 Msa1217170:CDS
GGAGAAAGAGTAGCCCTATT+GGG 0.447212 8_1:+79410703 Msa1217170:CDS
CCCACGTCAAAGCATCTTGT+TGG 0.447447 8_1:-79409538 None:intergenic
TTGAATTGCTTTCCAGTTGG+TGG 0.448517 8_1:-79409376 None:intergenic
GCTGCGATGGGAGGTGGAAC+TGG 0.448982 8_1:+79409490 Msa1217170:CDS
TCCAGTTGGTGGATCAAACT+TGG 0.452909 8_1:-79409365 None:intergenic
ATGGACAGAGCTGGATTAGT+TGG 0.453708 8_1:+79410080 Msa1217170:CDS
TGCCATTTCCCCTCGGGTAT+CGG 0.457752 8_1:-79410250 None:intergenic
ATACCATGAGACAGACTAAT+GGG 0.461341 8_1:+79408136 Msa1217170:CDS
ACCAAGTTTGATCCACCAAC+TGG 0.463045 8_1:+79409364 Msa1217170:CDS
AACCAATAGGAATGGCTGTT+GGG 0.466377 8_1:+79408578 Msa1217170:intron
GCAACAGTGTTCAACATACT+TGG 0.468649 8_1:+79411150 Msa1217170:CDS
TGCACGTTTCTGCAAGCCAT+TGG 0.468795 8_1:+79410804 Msa1217170:CDS
GCCATTGACAATTGGTCAGC+AGG 0.472373 8_1:-79411102 None:intergenic
GGAATGCCTTTGTACTCTGC+TGG 0.473780 8_1:-79410287 None:intergenic
TTAGTATTATAGTGCACGTA+TGG 0.476075 8_1:-79411465 None:intergenic
ACAACAACCTTTGTTTGTGT+TGG 0.477977 8_1:-79407246 None:intergenic
TGGAGGTCCTATGCATGAAT+TGG 0.478037 8_1:+79408955 Msa1217170:CDS
GGAAGAAGAAGTGTTCTTCT+GGG 0.482567 8_1:-79407396 None:intergenic
GACTGGAGAATTGAAATTAT+GGG 0.483848 8_1:-79407121 None:intergenic
GTCAGCCGTTCAGAACTGTT+TGG 0.487689 8_1:+79410732 Msa1217170:CDS
ATACATGCTGCGATGGGAGG+TGG 0.489733 8_1:+79409484 Msa1217170:CDS
CACCAATGCCATTTCCCCTC+GGG 0.491891 8_1:-79410256 None:intergenic
TAAGACCAGCCATTGACAAT+TGG 0.492812 8_1:-79411110 None:intergenic
ATGTTGTATCGTGTATATTG+AGG 0.493168 8_1:-79411239 None:intergenic
AAAGCTCCTACAGGTGGTAT+AGG 0.493402 8_1:-79408772 None:intergenic
CCACGTCAAAGCATCTTGTT+GGG 0.494671 8_1:-79409537 None:intergenic
CCTCCCCAACATGGTGGTGA+TGG 0.495137 8_1:+79410154 Msa1217170:CDS
AGAATTGAGAGAGGTTGCAA+AGG 0.496003 8_1:+79408837 Msa1217170:CDS
TCAGCGGCTTGCTCTGCGTA+TGG 0.497079 8_1:-79409178 None:intergenic
ACTACTATTTCAGCTGGACT+TGG 0.499592 8_1:+79408222 Msa1217170:CDS
GTGATAACATGGATCAATAC+AGG 0.499825 8_1:-79409136 None:intergenic
TCCAATTGATCCTTCTTCTA+CGG 0.501095 8_1:-79410875 None:intergenic
TGTTGTATCGTGTATATTGA+GGG 0.501224 8_1:-79411238 None:intergenic
CATACCATGAGACAGACTAA+TGG 0.501531 8_1:+79408135 Msa1217170:CDS
ACAAACAAGAGAGGCATTAG+AGG 0.503095 8_1:+79411173 Msa1217170:CDS
CGTGGTATGATCAGTGGTAC+TGG 0.504327 8_1:+79409001 Msa1217170:CDS
GGAGAATTGAAATTATGGGT+TGG 0.505814 8_1:-79407117 None:intergenic
ATCGTCGATGGCTGCTGCAG+TGG 0.507645 8_1:-79410213 None:intergenic
CTTTGAGTAGTGCTCTAAGT+AGG 0.507922 8_1:+79408791 Msa1217170:CDS
GTAGTTGCTGTTATTGGTGA+TGG 0.508169 8_1:+79408628 Msa1217170:CDS
GTGATCCATGGTCAATATAT+CGG 0.508554 8_1:-79411080 None:intergenic
ATACTCATCATTCTTGCAAA+GGG 0.512668 8_1:+79409633 Msa1217170:CDS
TCTATGTTATGACCATCAAC+AGG 0.515677 8_1:-79409064 None:intergenic
GGCTGTTGGGAGAGATCTGA+AGG 0.516771 8_1:+79408591 Msa1217170:CDS
GCAAAATTATGGTGTCATTG+AGG 0.518092 8_1:-79411374 None:intergenic
GAGTAGCCCTATTGGGCTAC+GGG 0.519027 8_1:+79410710 Msa1217170:CDS
CAAGCCATGTTGTTCAACTA+AGG 0.519980 8_1:-79410764 None:intergenic
GACAACTATGCAGTGGAGGC+CGG 0.522608 8_1:+79411044 Msa1217170:intron
CTTGCAAAGGGCCTATGACC+AGG 0.524812 8_1:+79409645 Msa1217170:CDS
AGATTTGCAATGGACAGAGC+TGG 0.525132 8_1:+79410071 Msa1217170:CDS
AGTTCAACTACTATTTCAGC+TGG 0.526493 8_1:+79408216 Msa1217170:CDS
GGCTGACCCGTAGCCCAATA+GGG 0.528076 8_1:-79410716 None:intergenic
ACACCAATGCCATTTCCCCT+CGG 0.529099 8_1:-79410257 None:intergenic
TACCCGAGGGGAAATGGCAT+TGG 0.530322 8_1:+79410254 Msa1217170:CDS
GCTGACCAATTGTCAATGGC+TGG 0.531698 8_1:+79411105 Msa1217170:CDS
GCACTACTCAAAGCTCCTAC+AGG 0.533764 8_1:-79408781 None:intergenic
GAACCAATAGGAATGGCTGT+TGG 0.533777 8_1:+79408577 Msa1217170:intron
CAAAGCTCTGCTTCATCAGA+AGG 0.534683 8_1:-79410179 None:intergenic
ACCTGCTGACCAATTGTCAA+TGG 0.535095 8_1:+79411101 Msa1217170:CDS
TTCCATCTAAAAGACCATCA+AGG 0.536693 8_1:-79410930 None:intergenic
TTTGTGGGATGTTGGTCACC+AGG 0.538468 8_1:+79407966 Msa1217170:CDS
TATGAAGCTATGAACAATGC+TGG 0.538515 8_1:+79408673 Msa1217170:CDS
GCTTCCTGTAAGATTTGCAA+TGG 0.538600 8_1:+79410061 Msa1217170:CDS
GTCAAAACTACTAATAGTAC+CGG 0.538944 8_1:+79409112 Msa1217170:CDS
CCATGGTCAATATATCGGTC+GGG 0.539704 8_1:-79411075 None:intergenic
ATAATACTAACTAATTATAG+AGG 0.540450 8_1:+79411478 Msa1217170:three_prime_UTR
TAAAATACTTACTGGTAGAA+GGG 0.540493 8_1:+79408104 Msa1217170:CDS
AGGAGCCATCACCACCATGT+TGG 0.540606 8_1:-79410159 None:intergenic
TCACAAGGTGTTACAAAAGA+AGG 0.540930 8_1:-79407372 None:intergenic
AGAGTAGCCCTATTGGGCTA+CGG 0.541980 8_1:+79410709 Msa1217170:CDS
GTACAAAGGCATTCCTCTTG+AGG 0.543393 8_1:+79410295 Msa1217170:CDS
TATCGCAATACATGCTGCGA+TGG 0.543634 8_1:+79409477 Msa1217170:CDS
AAAGGTAGGATACTAATTGA+AGG 0.544500 8_1:+79410682 Msa1217170:CDS
CATGCCGTTACATTTGCTGC+AGG 0.547176 8_1:+79409574 Msa1217170:CDS
CCAACAAGATGCTTTGACGT+GGG 0.550307 8_1:+79409538 Msa1217170:CDS
TATACTCATCATTCTTGCAA+AGG 0.554665 8_1:+79409632 Msa1217170:CDS
GGAGTAACAAAACGAATTGG+AGG 0.556176 8_1:+79408938 Msa1217170:CDS
CTCGGGTATCGGAAACAACT+CGG 0.556658 8_1:-79410239 None:intergenic
GCTGCAGGTCTAGCTTGTGA+AGG 0.558594 8_1:+79409589 Msa1217170:CDS
CATTGAGAGTGAGAAGAAGA+AGG 0.562360 8_1:-79407417 None:intergenic
ATATTAACCAACACAAACAA+AGG 0.565171 8_1:+79407239 Msa1217170:five_prime_UTR
GTTCTGATCACCGTAGAAGA+AGG 0.565510 8_1:+79410865 Msa1217170:CDS
GCTGGATTAGTTGGATCAGA+TGG 0.566290 8_1:+79410089 Msa1217170:CDS
TCCATGGTCAATATATCGGT+CGG 0.567471 8_1:-79411076 None:intergenic
TCCATCTAAAAGACCATCAA+GGG 0.567878 8_1:-79410929 None:intergenic
TATGGCATGCCTCCCCAACA+TGG 0.569047 8_1:+79410145 Msa1217170:CDS
CGAATCAAGGATCGATCCAA+TGG 0.575852 8_1:-79410820 None:intergenic
TAGTTAATAGTGTCAAGTAA+TGG 0.576385 8_1:-79407555 None:intergenic
ATCTTGTTGGGAATCGGCGA+TGG 0.577057 8_1:-79409525 None:intergenic
CCCAACAAGATGCTTTGACG+TGG 0.578877 8_1:+79409537 Msa1217170:CDS
TATCGGTCGGGAAGAACCAC+CGG 0.579648 8_1:-79411063 None:intergenic
TTCAGTGTTTCAAGAACTGG+GGG 0.580278 8_1:+79407865 Msa1217170:CDS
TATCTAAACCGAAATTTGAA+CGG 0.581558 8_1:+79411571 Msa1217170:three_prime_UTR
ATTGGTCAGCAGGTGATCCA+TGG 0.582909 8_1:-79411092 None:intergenic
ATAGTGTCAAGTAATGGAGT+AGG 0.583027 8_1:-79407549 None:intergenic
GTGTCAAGTAATGGAGTAGG+AGG 0.583729 8_1:-79407546 None:intergenic
CACTGTTGCTGCTATGTGAG+AGG 0.583769 8_1:-79411136 None:intergenic
ATCGCAATACATGCTGCGAT+GGG 0.585240 8_1:+79409478 Msa1217170:CDS
GCTTTGAATTGCTTTCCAGT+TGG 0.585632 8_1:-79409379 None:intergenic
TGAGTGAAGTAGTACCTTGG+TGG 0.585939 8_1:-79407601 None:intergenic
ACCACAGGTGGTACATGATG+TGG 0.589888 8_1:+79410028 Msa1217170:intron
GTAGAAGAAGGATCAATTGG+AGG 0.595008 8_1:+79410877 Msa1217170:CDS
TGATTGTGAACGAAGTGGAC+TGG 0.596202 8_1:-79407138 None:intergenic
AACATGGATCAATACAGGAC+CGG 0.598177 8_1:-79409131 None:intergenic
GGTGATGGTGCTATGACAGC+GGG 0.598232 8_1:+79408643 Msa1217170:CDS
CAACAAGATGCTTTGACGTG+GGG 0.598949 8_1:+79409539 Msa1217170:CDS
CAAGCCGCTGACAAGTATCA+TGG 0.599890 8_1:+79409190 Msa1217170:CDS
TTCGCAGCCAATTCATGCAT+AGG 0.601604 8_1:-79408962 None:intergenic
AAAAGATTGCTAATTTGCAG+AGG 0.602055 8_1:+79411608 Msa1217170:three_prime_UTR
TAACCCATTAGTCTGTCTCA+TGG 0.604663 8_1:-79408139 None:intergenic
ACAACTCGGTCGATCGTCGA+TGG 0.606839 8_1:-79410225 None:intergenic
CGGTTTAGATAACAGAAATG+CGG 0.610437 8_1:-79411559 None:intergenic
CCCGACCGATATATTGACCA+TGG 0.612239 8_1:+79411075 Msa1217170:CDS
GCAATACATGCTGCGATGGG+AGG 0.614477 8_1:+79409481 Msa1217170:CDS
TTACACAACATACTTTGCAG+AGG 0.619468 8_1:+79409420 Msa1217170:CDS
ATTGGTTAAGAAGGAGACGT+GGG 0.620865 8_1:-79407161 None:intergenic
GAGCCATCACCACCATGTTG+GGG 0.622407 8_1:-79410157 None:intergenic
TGGAAAGCAATTCAAAGCAA+CGG 0.628196 8_1:+79409384 Msa1217170:CDS
TGGTGATGGTGCTATGACAG+CGG 0.633316 8_1:+79408642 Msa1217170:CDS
TTTCAGTGTTTCAAGAACTG+GGG 0.633346 8_1:+79407864 Msa1217170:CDS
CCATCACCACCATGTTGGGG+AGG 0.634531 8_1:-79410154 None:intergenic
ATTATTTAACTAGATAACGC+AGG 0.635299 8_1:+79411309 Msa1217170:three_prime_UTR
GAGTTGTTTCCGATACCCGA+GGG 0.637112 8_1:+79410241 Msa1217170:CDS
GCTTCCTTAGTTGAACAACA+TGG 0.637397 8_1:+79410760 Msa1217170:CDS
AGTGTTCTTCTGGGATCACA+AGG 0.638544 8_1:-79407387 None:intergenic
TGAAGCAGAGCTTTGTCACA+TGG 0.638669 8_1:+79410187 Msa1217170:CDS
TAGACCTGCAGCAAATGTAA+CGG 0.641986 8_1:-79409578 None:intergenic
CGAGTTGTTTCCGATACCCG+AGG 0.642120 8_1:+79410240 Msa1217170:CDS
AGCAGCCAAACAGTTCTGAA+CGG 0.644314 8_1:-79410737 None:intergenic
TCAGATGGTCCTACACATTG+TGG 0.645337 8_1:+79410104 Msa1217170:CDS
AACTATGCAGTGGAGGCCGG+TGG 0.646065 8_1:+79411047 Msa1217170:intron
TCCCACAAAATCTTATCCTG+AGG 0.647268 8_1:-79407952 None:intergenic
GGTCCATCAAGAGTAGCAGT+TGG 0.647333 8_1:-79408751 None:intergenic
TGGCTTGCAGAAACGTGCAT+CGG 0.647415 8_1:-79410800 None:intergenic
TATTGGTTAAGAAGGAGACG+TGG 0.647941 8_1:-79407162 None:intergenic
TCAAAAGAACCACAATGTGT+AGG 0.648738 8_1:-79410113 None:intergenic
TCTTCTTCTCACTCTCAATG+GGG 0.649252 8_1:+79407420 Msa1217170:CDS
GTTGTATCGTGTATATTGAG+GGG 0.654052 8_1:-79411237 None:intergenic
ACTGTTGCTGCTATGTGAGA+GGG 0.660707 8_1:-79411135 None:intergenic
CAGTCTGGCAAAATCACATG+AGG 0.662811 8_1:+79410843 Msa1217170:CDS
GATGGACCTATACCACCTGT+AGG 0.673324 8_1:+79408766 Msa1217170:CDS
ACAGGAGCTGAAACAGCTTG+CGG 0.674251 8_1:+79407819 Msa1217170:intron
GAACTTCCAGCAGAGTACAA+AGG 0.675968 8_1:+79410281 Msa1217170:CDS
TATGCTCGTGGTATGATCAG+TGG 0.678017 8_1:+79408995 Msa1217170:CDS
AAAGTTGACGAGTATGCTCG+TGG 0.686551 8_1:+79408983 Msa1217170:CDS
ACCTCTTAGAGAATTGAGAG+AGG 0.689978 8_1:+79408828 Msa1217170:CDS
CTACTCAAAGCTCCTACAGG+TGG 0.693731 8_1:-79408778 None:intergenic
GTGGGTGATTGTGAACGAAG+TGG 0.699805 8_1:-79407143 None:intergenic
CATACTTGGACAAACAAGAG+AGG 0.703939 8_1:+79411164 Msa1217170:CDS
ATTACCATGATACTTGTCAG+CGG 0.708984 8_1:-79409194 None:intergenic
GCTGTTGGGAGAGATCTGAA+GGG 0.712298 8_1:+79408592 Msa1217170:CDS
AGTTGTTTCCGATACCCGAG+GGG 0.719126 8_1:+79410242 Msa1217170:CDS
GGCATGCCTCCCCAACATGG+TGG 0.744567 8_1:+79410148 Msa1217170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTATATATAGTAGTA+TGG - chr8_1:79407209-79407228 None:intergenic 10.0%
!!! CAATTTTTTCAAATTAATAT+CGG + chr8_1:79408362-79408381 Msa1217170:intron 10.0%
!!! TATAATATTATTGGTTAAGA+AGG - chr8_1:79407173-79407192 None:intergenic 15.0%
!!! CGATATTAATTTGAAAAAAT+TGG - chr8_1:79408364-79408383 None:intergenic 15.0%
!! ATATTTACATGAATGAATAA+TGG + chr8_1:79408471-79408490 Msa1217170:intron 15.0%
!!! TGACAAAATGATATTTTTAT+AGG + chr8_1:79408916-79408935 Msa1217170:intron 15.0%
!!! GACAAAATGATATTTTTATA+GGG + chr8_1:79408917-79408936 Msa1217170:intron 15.0%
!! GTAATTGTTCAAAATATATA+AGG - chr8_1:79409223-79409242 None:intergenic 15.0%
!!! CATAAATTTTTCAAAATGTT+GGG - chr8_1:79409870-79409889 None:intergenic 15.0%
!!! AACATTTTGAAAAATTTATG+CGG + chr8_1:79409870-79409889 Msa1217170:intron 15.0%
!!! GAAAATATGTGAATTTTATA+GGG - chr8_1:79410407-79410426 None:intergenic 15.0%
!!! TGAAAATATGTGAATTTTAT+AGG - chr8_1:79410408-79410427 None:intergenic 15.0%
!! AATTGAACAAAATTTATGTA+GGG - chr8_1:79410438-79410457 None:intergenic 15.0%
!! AAATTGAACAAAATTTATGT+AGG - chr8_1:79410439-79410458 None:intergenic 15.0%
!!! TAAAAAGTCATAATTTTGTA+CGG + chr8_1:79410580-79410599 Msa1217170:intron 15.0%
!! TTTAATGTTTACATTGAAAA+GGG - chr8_1:79410982-79411001 None:intergenic 15.0%
!! ATTTAATGTTTACATTGAAA+AGG - chr8_1:79410983-79411002 None:intergenic 15.0%
!!! AATTTTGAAAAACAACATTT+CGG - chr8_1:79411407-79411426 None:intergenic 15.0%
!! ATAATACTAACTAATTATAG+AGG + chr8_1:79411478-79411497 Msa1217170:three_prime_UTR 15.0%
!!! AATTTTTGAATGATTGATAC+AGG + chr8_1:79407801-79407820 Msa1217170:intron 20.0%
!!! AATGATGTGATATTTTGATT+TGG + chr8_1:79408532-79408551 Msa1217170:intron 20.0%
!!! TTTTGATTTGGATTTAACTT+TGG + chr8_1:79408544-79408563 Msa1217170:intron 20.0%
!!! TATAACTTTTTTCATGTGAT+GGG - chr8_1:79409689-79409708 None:intergenic 20.0%
!! TCTCAAATTTATTACCTAAT+AGG - chr8_1:79409769-79409788 None:intergenic 20.0%
!!! GCATAAATTTTTCAAAATGT+TGG - chr8_1:79409871-79409890 None:intergenic 20.0%
!!! AATTTTAATTTTACCTCAAG+AGG - chr8_1:79410311-79410330 None:intergenic 20.0%
!!! TAAGTTGAACAAATTTATGT+AGG + chr8_1:79410541-79410560 Msa1217170:intron 20.0%
!! AAGTTGAACAAATTTATGTA+GGG + chr8_1:79410542-79410561 Msa1217170:intron 20.0%
!!! TTCTGATATTTTAACAGATT+GGG + chr8_1:79410659-79410678 Msa1217170:intron 20.0%
!! ATGTCATAAGAAAAATACAA+AGG + chr8_1:79411198-79411217 Msa1217170:exon 20.0%
!! TGTCATAAGAAAAATACAAA+GGG + chr8_1:79411199-79411218 Msa1217170:exon 20.0%
! ATATTAACCAACACAAACAA+AGG + chr8_1:79407239-79407258 Msa1217170:five_prime_UTR 25.0%
! AACAAACTCAAGAAAAAGAT+TGG + chr8_1:79407474-79407493 Msa1217170:CDS 25.0%
! TAGTTAATAGTGTCAAGTAA+TGG - chr8_1:79407558-79407577 None:intergenic 25.0%
! ATTGTCTCTTATATATGAAC+CGG - chr8_1:79407631-79407650 None:intergenic 25.0%
! TCAACAAAAGTTAATGTATC+TGG + chr8_1:79407655-79407674 Msa1217170:intron 25.0%
!! TATGTTGTTTATGTTTGTTG+AGG + chr8_1:79408000-79408019 Msa1217170:intron 25.0%
! ATAAGATTTCAATTCACAAC+AGG - chr8_1:79408044-79408063 None:intergenic 25.0%
! TATCCTCATAAAATACTTAC+TGG + chr8_1:79408096-79408115 Msa1217170:CDS 25.0%
! ATAAAATACTTACTGGTAGA+AGG + chr8_1:79408103-79408122 Msa1217170:CDS 25.0%
! TAAAATACTTACTGGTAGAA+GGG + chr8_1:79408104-79408123 Msa1217170:CDS 25.0%
!! TGAATAATGGAATTGAAAGA+TGG + chr8_1:79408484-79408503 Msa1217170:intron 25.0%
!!! GTATAACTTTTTTCATGTGA+TGG - chr8_1:79409690-79409709 None:intergenic 25.0%
!! GTATGATATCTATACTTTTG+AGG + chr8_1:79409711-79409730 Msa1217170:intron 25.0%
! AATTAATTGATCATCTGTCT+TGG - chr8_1:79409814-79409833 None:intergenic 25.0%
!! ATATCCTCTTGTAGAATTTT+AGG + chr8_1:79410347-79410366 Msa1217170:intron 25.0%
!! TTTTATTGATACCAAGTACA+GGG + chr8_1:79410474-79410493 Msa1217170:intron 25.0%
! ATAAAACTTCACGATAAATG+AGG - chr8_1:79410509-79410528 None:intergenic 25.0%
!!! TCGTGAAGTTTTATAAAAGT+AGG + chr8_1:79410515-79410534 Msa1217170:intron 25.0%
!!! CGTGAAGTTTTATAAAAGTA+GGG + chr8_1:79410516-79410535 Msa1217170:intron 25.0%
! GGACTAAAAATATATTCAAC+TGG + chr8_1:79410601-79410620 Msa1217170:intron 25.0%
!!! GTTCTGATATTTTAACAGAT+TGG + chr8_1:79410658-79410677 Msa1217170:intron 25.0%
!!! ATATTTTAACAGATTGGGAA+AGG + chr8_1:79410664-79410683 Msa1217170:intron 25.0%
!! TCTTTTAGATGGAAATTTGA+AGG + chr8_1:79410939-79410958 Msa1217170:CDS 25.0%
! GTCATAAGAAAAATACAAAG+GGG + chr8_1:79411200-79411219 Msa1217170:exon 25.0%
! ATTATTTAACTAGATAACGC+AGG + chr8_1:79411309-79411328 Msa1217170:three_prime_UTR 25.0%
!!! AAAGTCTTAACTTTTTCTTG+CGG + chr8_1:79411522-79411541 Msa1217170:three_prime_UTR 25.0%
! TATCTAAACCGAAATTTGAA+CGG + chr8_1:79411571-79411590 Msa1217170:three_prime_UTR 25.0%
!!! TTAAGAACCTTATTTTGTCT+TGG + chr8_1:79411654-79411673 Msa1217170:three_prime_UTR 25.0%
GAGAATTGAAATTATGGGTT+GGG - chr8_1:79407119-79407138 None:intergenic 30.0%
GACTGGAGAATTGAAATTAT+GGG - chr8_1:79407124-79407143 None:intergenic 30.0%
!! CTTCCATTTTCTGTTTGTTA+TGG + chr8_1:79407329-79407348 Msa1217170:exon 30.0%
GATCCATAACAAACAGAAAA+TGG - chr8_1:79407335-79407354 None:intergenic 30.0%
! AGAGATTTTTCATGTGGATT+GGG - chr8_1:79407581-79407600 None:intergenic 30.0%
! TGACTTAATTTTCTCTACGA+AGG + chr8_1:79407718-79407737 Msa1217170:intron 30.0%
! GACTTAATTTTCTCTACGAA+GGG + chr8_1:79407719-79407738 Msa1217170:intron 30.0%
!! ATGTTGTTTCTGAATGTCAT+TGG + chr8_1:79407765-79407784 Msa1217170:intron 30.0%
! ATTTTCAGTGTTTCAAGAAC+TGG + chr8_1:79407862-79407881 Msa1217170:CDS 30.0%
! TTTTCAGTGTTTCAAGAACT+GGG + chr8_1:79407863-79407882 Msa1217170:CDS 30.0%
!! CTATGTTTTTAATACACCTC+AGG + chr8_1:79407936-79407955 Msa1217170:CDS 30.0%
! CTACCAGTAAGTATTTTATG+AGG - chr8_1:79408102-79408121 None:intergenic 30.0%
! GAGAGTGAATATGATTCTTT+TGG + chr8_1:79408183-79408202 Msa1217170:CDS 30.0%
TAATTCTTCTCTCTACTATC+TGG + chr8_1:79408245-79408264 Msa1217170:intron 30.0%
ATCACATCATTGAACTAGAA+AGG - chr8_1:79408523-79408542 None:intergenic 30.0%
! AATGATGTAGTTGCTGTTAT+TGG + chr8_1:79408622-79408641 Msa1217170:CDS 30.0%
!!! AGTTTTGACTTCTTTGAGAA+TGG - chr8_1:79409101-79409120 None:intergenic 30.0%
GTCAAAACTACTAATAGTAC+CGG + chr8_1:79409112-79409131 Msa1217170:CDS 30.0%
ATTCAATATGCTTCTAGTGA+TGG - chr8_1:79409249-79409268 None:intergenic 30.0%
GATAATATCTTTGTCAGCTT+TGG - chr8_1:79409461-79409480 None:intergenic 30.0%
ATATTGCACAAAAAGGCTTA+AGG - chr8_1:79409615-79409634 None:intergenic 30.0%
GATGAGTATATTGCACAAAA+AGG - chr8_1:79409622-79409641 None:intergenic 30.0%
TATACTCATCATTCTTGCAA+AGG + chr8_1:79409632-79409651 Msa1217170:CDS 30.0%
ATACTCATCATTCTTGCAAA+GGG + chr8_1:79409633-79409652 Msa1217170:CDS 30.0%
!!! TATACTTTTGAGGTATGCTT+GGG + chr8_1:79409721-79409740 Msa1217170:intron 30.0%
! TGAAGTTTGAAATCAAGTAC+AGG + chr8_1:79409916-79409935 Msa1217170:intron 30.0%
GCAATGATTTCGATTAAATG+AGG - chr8_1:79409952-79409971 None:intergenic 30.0%
!!! TTCTTTTGACGTCACTTTTA+TGG + chr8_1:79410127-79410146 Msa1217170:CDS 30.0%
TACAAGAGGATATGTATGTA+TGG - chr8_1:79410340-79410359 None:intergenic 30.0%
TATGCCTAAAATTCTACAAG+AGG - chr8_1:79410354-79410373 None:intergenic 30.0%
! CTTTTATTGATACCAAGTAC+AGG + chr8_1:79410473-79410492 Msa1217170:intron 30.0%
AAAGGTAGGATACTAATTGA+AGG + chr8_1:79410682-79410701 Msa1217170:CDS 30.0%
!!! TCAAAGCATGAGTTTTGAAT+TGG - chr8_1:79411017-79411036 None:intergenic 30.0%
TGTTGTATCGTGTATATTGA+GGG - chr8_1:79411241-79411260 None:intergenic 30.0%
ATGTTGTATCGTGTATATTG+AGG - chr8_1:79411242-79411261 None:intergenic 30.0%
TTGTCAAATAGTTGCATGTA+TGG + chr8_1:79411332-79411351 Msa1217170:three_prime_UTR 30.0%
TTAGTATTATAGTGCACGTA+TGG - chr8_1:79411468-79411487 None:intergenic 30.0%
!! AAGTCTTAACTTTTTCTTGC+GGG + chr8_1:79411523-79411542 Msa1217170:three_prime_UTR 30.0%
! AAAAGATTGCTAATTTGCAG+AGG + chr8_1:79411608-79411627 Msa1217170:three_prime_UTR 30.0%
GAATAGTCCAAGACAAAATA+AGG - chr8_1:79411664-79411683 None:intergenic 30.0%
GGAGAATTGAAATTATGGGT+TGG - chr8_1:79407120-79407139 None:intergenic 35.0%
GGACTGGAGAATTGAAATTA+TGG - chr8_1:79407125-79407144 None:intergenic 35.0%
! ACAACAACCTTTGTTTGTGT+TGG - chr8_1:79407249-79407268 None:intergenic 35.0%
! TCACAAGGTGTTACAAAAGA+AGG - chr8_1:79407375-79407394 None:intergenic 35.0%
TTCTTCTTCTCACTCTCAAT+GGG + chr8_1:79407419-79407438 Msa1217170:CDS 35.0%
! ATAGTGTCAAGTAATGGAGT+AGG - chr8_1:79407552-79407571 None:intergenic 35.0%
! GAGAGATTTTTCATGTGGAT+TGG - chr8_1:79407582-79407601 None:intergenic 35.0%
TCAACAAAAGTCGATGTATC+TGG - chr8_1:79407701-79407720 None:intergenic 35.0%
TTTCAGTGTTTCAAGAACTG+GGG + chr8_1:79407864-79407883 Msa1217170:CDS 35.0%
! GGACATTTAGGTTCAAGTTT+AGG + chr8_1:79407886-79407905 Msa1217170:CDS 35.0%
! ACCTCAGGATAAGATTTTGT+GGG + chr8_1:79407951-79407970 Msa1217170:CDS 35.0%
! GATAAGATTTTGTGGGATGT+TGG + chr8_1:79407958-79407977 Msa1217170:CDS 35.0%
ATACCATGAGACAGACTAAT+GGG + chr8_1:79408136-79408155 Msa1217170:CDS 35.0%
! GAATATGATTCTTTTGGCAC+TGG + chr8_1:79408189-79408208 Msa1217170:CDS 35.0%
AGTTCAACTACTATTTCAGC+TGG + chr8_1:79408216-79408235 Msa1217170:CDS 35.0%
ACGTCTTCAAAATGAAGTGT+CGG - chr8_1:79408290-79408309 None:intergenic 35.0%
CTGTATTGAACCAATAGGAA+TGG + chr8_1:79408570-79408589 Msa1217170:intron 35.0%
TATGAAGCTATGAACAATGC+TGG + chr8_1:79408673-79408692 Msa1217170:CDS 35.0%
AAGAAGAAGCTTCAAATGGA+TGG - chr8_1:79408897-79408916 None:intergenic 35.0%
TGTCAAGAAGAAGCTTCAAA+TGG - chr8_1:79408901-79408920 None:intergenic 35.0%
TAGGGAGTAACAAAACGAAT+TGG + chr8_1:79408935-79408954 Msa1217170:intron 35.0%
!! TCAACACTTTTTGAAGAGCT+TGG + chr8_1:79409025-79409044 Msa1217170:CDS 35.0%
TCTATGTTATGACCATCAAC+AGG - chr8_1:79409067-79409086 None:intergenic 35.0%
GTGATAACATGGATCAATAC+AGG - chr8_1:79409139-79409158 None:intergenic 35.0%
ATCCATGTTATCACCGAAAA+AGG + chr8_1:79409145-79409164 Msa1217170:CDS 35.0%
ATTACCATGATACTTGTCAG+CGG - chr8_1:79409197-79409216 None:intergenic 35.0%
TGGAAAGCAATTCAAAGCAA+CGG + chr8_1:79409384-79409403 Msa1217170:CDS 35.0%
TTACACAACATACTTTGCAG+AGG + chr8_1:79409420-79409439 Msa1217170:CDS 35.0%
! TTGTTATTCTACCTGGTCAT+AGG - chr8_1:79409659-79409678 None:intergenic 35.0%
! AGAGAAGTTGTTATTCTACC+TGG - chr8_1:79409666-79409685 None:intergenic 35.0%
!!! CTATACTTTTGAGGTATGCT+TGG + chr8_1:79409720-79409739 Msa1217170:intron 35.0%
TCAAAAGAACCACAATGTGT+AGG - chr8_1:79410116-79410135 None:intergenic 35.0%
GTCCTATGAGTTATGACAAA+TGG + chr8_1:79410623-79410642 Msa1217170:intron 35.0%
AGCCATTTGTCATAACTCAT+AGG - chr8_1:79410628-79410647 None:intergenic 35.0%
TTTAACAGATTGGGAAAGGT+AGG + chr8_1:79410668-79410687 Msa1217170:intron 35.0%
TCCAATTGATCCTTCTTCTA+CGG - chr8_1:79410878-79410897 None:intergenic 35.0%
TCCATCTAAAAGACCATCAA+GGG - chr8_1:79410932-79410951 None:intergenic 35.0%
TTCCATCTAAAAGACCATCA+AGG - chr8_1:79410933-79410952 None:intergenic 35.0%
TTTACATGACAACTATGCAG+TGG + chr8_1:79411037-79411056 Msa1217170:intron 35.0%
GTGATCCATGGTCAATATAT+CGG - chr8_1:79411083-79411102 None:intergenic 35.0%
GTTGTATCGTGTATATTGAG+GGG - chr8_1:79411240-79411259 None:intergenic 35.0%
!! GCAAAATTATGGTGTCATTG+AGG - chr8_1:79411377-79411396 None:intergenic 35.0%
TCGGAACTTCAGCAAAATTA+TGG - chr8_1:79411388-79411407 None:intergenic 35.0%
CGGTTTAGATAACAGAAATG+CGG - chr8_1:79411562-79411581 None:intergenic 35.0%
AAGCGATACCGTTCAAATTT+CGG - chr8_1:79411582-79411601 None:intergenic 35.0%
ATTGGTTAAGAAGGAGACGT+GGG - chr8_1:79407164-79407183 None:intergenic 40.0%
! TATTGGTTAAGAAGGAGACG+TGG - chr8_1:79407165-79407184 None:intergenic 40.0%
!! GGAAGAAGAAGTGTTCTTCT+GGG - chr8_1:79407399-79407418 None:intergenic 40.0%
!! AGGAAGAAGAAGTGTTCTTC+TGG - chr8_1:79407400-79407419 None:intergenic 40.0%
CATTGAGAGTGAGAAGAAGA+AGG - chr8_1:79407420-79407439 None:intergenic 40.0%
CTTCTTCTTCTCACTCTCAA+TGG + chr8_1:79407418-79407437 Msa1217170:CDS 40.0%
TCTTCTTCTCACTCTCAATG+GGG + chr8_1:79407420-79407439 Msa1217170:CDS 40.0%
! TCATGCTTCACTTTCTGAGA+TGG + chr8_1:79407503-79407522 Msa1217170:CDS 40.0%
!! CATGCTTCACTTTCTGAGAT+GGG + chr8_1:79407504-79407523 Msa1217170:CDS 40.0%
! TGGTGGAGAGATTTTTCATG+TGG - chr8_1:79407587-79407606 None:intergenic 40.0%
CATGAAAAATCTCTCCACCA+AGG + chr8_1:79407587-79407606 Msa1217170:CDS 40.0%
GTCTCTTATATATGAACCGG+AGG - chr8_1:79407628-79407647 None:intergenic 40.0%
TTCAGTGTTTCAAGAACTGG+GGG + chr8_1:79407865-79407884 Msa1217170:CDS 40.0%
! CACCTCAGGATAAGATTTTG+TGG + chr8_1:79407950-79407969 Msa1217170:CDS 40.0%
TCCCACAAAATCTTATCCTG+AGG - chr8_1:79407955-79407974 None:intergenic 40.0%
CATACCATGAGACAGACTAA+TGG + chr8_1:79408135-79408154 Msa1217170:CDS 40.0%
! TAACCCATTAGTCTGTCTCA+TGG - chr8_1:79408142-79408161 None:intergenic 40.0%
!! AGACAGACTAATGGGTTATC+TGG + chr8_1:79408144-79408163 Msa1217170:CDS 40.0%
ACTACTATTTCAGCTGGACT+TGG + chr8_1:79408222-79408241 Msa1217170:CDS 40.0%
GGCAACTGTATTGAACCAAT+AGG + chr8_1:79408565-79408584 Msa1217170:intron 40.0%
AACCAATAGGAATGGCTGTT+GGG + chr8_1:79408578-79408597 Msa1217170:intron 40.0%
! GTAGTTGCTGTTATTGGTGA+TGG + chr8_1:79408628-79408647 Msa1217170:CDS 40.0%
TTACCAACTGCTACTCTTGA+TGG + chr8_1:79408748-79408767 Msa1217170:CDS 40.0%
! CTTTGAGTAGTGCTCTAAGT+AGG + chr8_1:79408791-79408810 Msa1217170:CDS 40.0%
ACCTCTTAGAGAATTGAGAG+AGG + chr8_1:79408828-79408847 Msa1217170:CDS 40.0%
ACCTCTCTCAATTCTCTAAG+AGG - chr8_1:79408832-79408851 None:intergenic 40.0%
AGAATTGAGAGAGGTTGCAA+AGG + chr8_1:79408837-79408856 Msa1217170:CDS 40.0%
GGAGTAACAAAACGAATTGG+AGG + chr8_1:79408938-79408957 Msa1217170:CDS 40.0%
GAGCTTGGACTCTACTATAT+CGG + chr8_1:79409040-79409059 Msa1217170:CDS 40.0%
TACTATATCGGTCCTGTTGA+TGG + chr8_1:79409052-79409071 Msa1217170:CDS 40.0%
AACATGGATCAATACAGGAC+CGG - chr8_1:79409134-79409153 None:intergenic 40.0%
GCTGACAAGTATCATGGTAA+TGG + chr8_1:79409196-79409215 Msa1217170:intron 40.0%
TTCCTCACAGATATGTGAGT+TGG + chr8_1:79409323-79409342 Msa1217170:intron 40.0%
AACCAACTCACATATCTGTG+AGG - chr8_1:79409328-79409347 None:intergenic 40.0%
!!! GTGAGTTGGTTTGATTTTCC+AGG + chr8_1:79409337-79409356 Msa1217170:intron 40.0%
TTGAATTGCTTTCCAGTTGG+TGG - chr8_1:79409379-79409398 None:intergenic 40.0%
! GCTTTGAATTGCTTTCCAGT+TGG - chr8_1:79409382-79409401 None:intergenic 40.0%
! CAAAGCATCTTGTTGGGAAT+CGG - chr8_1:79409534-79409553 None:intergenic 40.0%
TAGACCTGCAGCAAATGTAA+CGG - chr8_1:79409581-79409600 None:intergenic 40.0%
!! TTTTGAGGGCTAAGCCTATT+AGG + chr8_1:79409752-79409771 Msa1217170:intron 40.0%
GAATTTCATGTCCATACCAC+AGG + chr8_1:79410013-79410032 Msa1217170:intron 40.0%
GCTTCCTGTAAGATTTGCAA+TGG + chr8_1:79410061-79410080 Msa1217170:CDS 40.0%
CTGTCCATTGCAAATCTTAC+AGG - chr8_1:79410068-79410087 None:intergenic 40.0%
!!! GGATTTTTAGTCCCTGTACT+TGG - chr8_1:79410488-79410507 None:intergenic 40.0%
GCTTCCTTAGTTGAACAACA+TGG + chr8_1:79410760-79410779 Msa1217170:CDS 40.0%
CAAGCCATGTTGTTCAACTA+AGG - chr8_1:79410767-79410786 None:intergenic 40.0%
ACCGTAGAAGAAGGATCAAT+TGG + chr8_1:79410874-79410893 Msa1217170:CDS 40.0%
GTAGAAGAAGGATCAATTGG+AGG + chr8_1:79410877-79410896 Msa1217170:CDS 40.0%
GAAGGATCAATTGGAGGATT+TGG + chr8_1:79410883-79410902 Msa1217170:CDS 40.0%
TTCTCATGTTGCTCAGTTCA+TGG + chr8_1:79410906-79410925 Msa1217170:CDS 40.0%
TCCATGGTCAATATATCGGT+CGG - chr8_1:79411079-79411098 None:intergenic 40.0%
TAAGACCAGCCATTGACAAT+TGG - chr8_1:79411113-79411132 None:intergenic 40.0%
GCAACAGTGTTCAACATACT+TGG + chr8_1:79411150-79411169 Msa1217170:CDS 40.0%
CATACTTGGACAAACAAGAG+AGG + chr8_1:79411164-79411183 Msa1217170:CDS 40.0%
!! ACAAACAAGAGAGGCATTAG+AGG + chr8_1:79411173-79411192 Msa1217170:CDS 40.0%
TGATTGTGAACGAAGTGGAC+TGG - chr8_1:79407141-79407160 None:intergenic 45.0%
!! AGTGTTCTTCTGGGATCACA+AGG - chr8_1:79407390-79407409 None:intergenic 45.0%
! GTGTCAAGTAATGGAGTAGG+AGG - chr8_1:79407549-79407568 None:intergenic 45.0%
TGAGTGAAGTAGTACCTTGG+TGG - chr8_1:79407604-79407623 None:intergenic 45.0%
GGATGAGTGAAGTAGTACCT+TGG - chr8_1:79407607-79407626 None:intergenic 45.0%
GTACTACTTCACTCATCCTC+CGG + chr8_1:79407609-79407628 Msa1217170:intron 45.0%
TCAAGAACTGGGGGACATTT+AGG + chr8_1:79407874-79407893 Msa1217170:CDS 45.0%
GAACCAATAGGAATGGCTGT+TGG + chr8_1:79408577-79408596 Msa1217170:intron 45.0%
AAAGCTCCTACAGGTGGTAT+AGG - chr8_1:79408775-79408794 None:intergenic 45.0%
TGGAGGTCCTATGCATGAAT+TGG + chr8_1:79408955-79408974 Msa1217170:CDS 45.0%
TTCGCAGCCAATTCATGCAT+AGG - chr8_1:79408965-79408984 None:intergenic 45.0%
AAAGTTGACGAGTATGCTCG+TGG + chr8_1:79408983-79409002 Msa1217170:CDS 45.0%
TATGCTCGTGGTATGATCAG+TGG + chr8_1:79408995-79409014 Msa1217170:CDS 45.0%
!!! GGCCTTTTTCGGTGATAACA+TGG - chr8_1:79409150-79409169 None:intergenic 45.0%
! GGATCAAACTTGGTAACTCC+TGG - chr8_1:79409358-79409377 None:intergenic 45.0%
ACCAAGTTTGATCCACCAAC+TGG + chr8_1:79409364-79409383 Msa1217170:CDS 45.0%
!! TCCAGTTGGTGGATCAAACT+TGG - chr8_1:79409368-79409387 None:intergenic 45.0%
TATCGCAATACATGCTGCGA+TGG + chr8_1:79409477-79409496 Msa1217170:CDS 45.0%
ATCGCAATACATGCTGCGAT+GGG + chr8_1:79409478-79409497 Msa1217170:CDS 45.0%
! CCACGTCAAAGCATCTTGTT+GGG - chr8_1:79409540-79409559 None:intergenic 45.0%
CCAACAAGATGCTTTGACGT+GGG + chr8_1:79409538-79409557 Msa1217170:CDS 45.0%
CAACAAGATGCTTTGACGTG+GGG + chr8_1:79409539-79409558 Msa1217170:CDS 45.0%
!!! ACTTTTGAGGTATGCTTGGG+TGG + chr8_1:79409724-79409743 Msa1217170:intron 45.0%
TTTCATGTCCATACCACAGG+TGG + chr8_1:79410016-79410035 Msa1217170:intron 45.0%
ATCATGTACCACCTGTGGTA+TGG - chr8_1:79410027-79410046 None:intergenic 45.0%
AGATTTGCAATGGACAGAGC+TGG + chr8_1:79410071-79410090 Msa1217170:CDS 45.0%
!! ATGGACAGAGCTGGATTAGT+TGG + chr8_1:79410080-79410099 Msa1217170:CDS 45.0%
!! GCTGGATTAGTTGGATCAGA+TGG + chr8_1:79410089-79410108 Msa1217170:CDS 45.0%
TCAGATGGTCCTACACATTG+TGG + chr8_1:79410104-79410123 Msa1217170:CDS 45.0%
CAAAGCTCTGCTTCATCAGA+AGG - chr8_1:79410182-79410201 None:intergenic 45.0%
! TGAAGCAGAGCTTTGTCACA+TGG + chr8_1:79410187-79410206 Msa1217170:CDS 45.0%
GAACTTCCAGCAGAGTACAA+AGG + chr8_1:79410281-79410300 Msa1217170:CDS 45.0%
!! GTACAAAGGCATTCCTCTTG+AGG + chr8_1:79410295-79410314 Msa1217170:CDS 45.0%
AGGAGAAAGAGTAGCCCTAT+TGG + chr8_1:79410702-79410721 Msa1217170:CDS 45.0%
GGAGAAAGAGTAGCCCTATT+GGG + chr8_1:79410703-79410722 Msa1217170:CDS 45.0%
!! AGCAGCCAAACAGTTCTGAA+CGG - chr8_1:79410740-79410759 None:intergenic 45.0%
CGAATCAAGGATCGATCCAA+TGG - chr8_1:79410823-79410842 None:intergenic 45.0%
! TTTTGCCAGACTGCGAATCA+AGG - chr8_1:79410836-79410855 None:intergenic 45.0%
CAGTCTGGCAAAATCACATG+AGG + chr8_1:79410843-79410862 Msa1217170:CDS 45.0%
GTTCTGATCACCGTAGAAGA+AGG + chr8_1:79410865-79410884 Msa1217170:CDS 45.0%
!! GCCCTTGATGGTCTTTTAGA+TGG + chr8_1:79410928-79410947 Msa1217170:CDS 45.0%
ACATGACAACTATGCAGTGG+AGG + chr8_1:79411040-79411059 Msa1217170:intron 45.0%
CCATGGTCAATATATCGGTC+GGG - chr8_1:79411078-79411097 None:intergenic 45.0%
ACCTGCTGACCAATTGTCAA+TGG + chr8_1:79411101-79411120 Msa1217170:CDS 45.0%
ACTGTTGCTGCTATGTGAGA+GGG - chr8_1:79411138-79411157 None:intergenic 45.0%
!! TATGATTATTATAATATTAT+TGG - chr8_1:79407182-79407201 None:intergenic 5.0%
GTGGGTGATTGTGAACGAAG+TGG - chr8_1:79407146-79407165 None:intergenic 50.0%
ACAGGAGCTGAAACAGCTTG+CGG + chr8_1:79407819-79407838 Msa1217170:intron 50.0%
TTTGTGGGATGTTGGTCACC+AGG + chr8_1:79407966-79407985 Msa1217170:CDS 50.0%
CAACATAACACCAACCCACC+TGG - chr8_1:79407987-79408006 None:intergenic 50.0%
GTCAGTCTCAGTTTCGTGTC+TGG + chr8_1:79408394-79408413 Msa1217170:intron 50.0%
CTCCCAACAGCCATTCCTAT+TGG - chr8_1:79408583-79408602 None:intergenic 50.0%
GCTGTTGGGAGAGATCTGAA+GGG + chr8_1:79408592-79408611 Msa1217170:CDS 50.0%
!! TGGTGATGGTGCTATGACAG+CGG + chr8_1:79408642-79408661 Msa1217170:CDS 50.0%
GGTCCATCAAGAGTAGCAGT+TGG - chr8_1:79408754-79408773 None:intergenic 50.0%
GATGGACCTATACCACCTGT+AGG + chr8_1:79408766-79408785 Msa1217170:CDS 50.0%
CTACTCAAAGCTCCTACAGG+TGG - chr8_1:79408781-79408800 None:intergenic 50.0%
GCACTACTCAAAGCTCCTAC+AGG - chr8_1:79408784-79408803 None:intergenic 50.0%
CGTGGTATGATCAGTGGTAC+TGG + chr8_1:79409001-79409020 Msa1217170:CDS 50.0%
GTTATCACCGAAAAAGGCCG+CGG + chr8_1:79409151-79409170 Msa1217170:CDS 50.0%
! TGGATATCCGCGGCCTTTTT+CGG - chr8_1:79409161-79409180 None:intergenic 50.0%
CAAGCCGCTGACAAGTATCA+TGG + chr8_1:79409190-79409209 Msa1217170:CDS 50.0%
ATCTTGTTGGGAATCGGCGA+TGG - chr8_1:79409528-79409547 None:intergenic 50.0%
CCCAACAAGATGCTTTGACG+TGG + chr8_1:79409537-79409556 Msa1217170:CDS 50.0%
! CCCACGTCAAAGCATCTTGT+TGG - chr8_1:79409541-79409560 None:intergenic 50.0%
! CATGCCGTTACATTTGCTGC+AGG + chr8_1:79409574-79409593 Msa1217170:CDS 50.0%
! TTTGAGGTATGCTTGGGTGG+AGG + chr8_1:79409727-79409746 Msa1217170:intron 50.0%
TTGAGGTATGCTTGGGTGGA+GGG + chr8_1:79409728-79409747 Msa1217170:intron 50.0%
! CTTGGGTGGAGGGTTTTTGA+GGG + chr8_1:79409738-79409757 Msa1217170:intron 50.0%
ACCACAGGTGGTACATGATG+TGG + chr8_1:79410028-79410047 Msa1217170:intron 50.0%
TCCACATCATGTACCACCTG+TGG - chr8_1:79410032-79410051 None:intergenic 50.0%
!! CTCGGGTATCGGAAACAACT+CGG - chr8_1:79410242-79410261 None:intergenic 50.0%
! GAGTTGTTTCCGATACCCGA+GGG + chr8_1:79410241-79410260 Msa1217170:CDS 50.0%
! AGTTGTTTCCGATACCCGAG+GGG + chr8_1:79410242-79410261 Msa1217170:CDS 50.0%
! ACACCAATGCCATTTCCCCT+CGG - chr8_1:79410260-79410279 None:intergenic 50.0%
GGAATGCCTTTGTACTCTGC+TGG - chr8_1:79410290-79410309 None:intergenic 50.0%
AGAGTAGCCCTATTGGGCTA+CGG + chr8_1:79410709-79410728 Msa1217170:CDS 50.0%
GTCAGCCGTTCAGAACTGTT+TGG + chr8_1:79410732-79410751 Msa1217170:CDS 50.0%
! TGGCTTGCAGAAACGTGCAT+CGG - chr8_1:79410803-79410822 None:intergenic 50.0%
TGCACGTTTCTGCAAGCCAT+TGG + chr8_1:79410804-79410823 Msa1217170:CDS 50.0%
! TCGATCCTTGATTCGCAGTC+TGG + chr8_1:79410828-79410847 Msa1217170:CDS 50.0%
CCCGACCGATATATTGACCA+TGG + chr8_1:79411075-79411094 Msa1217170:CDS 50.0%
ATTGGTCAGCAGGTGATCCA+TGG - chr8_1:79411095-79411114 None:intergenic 50.0%
GCCATTGACAATTGGTCAGC+AGG - chr8_1:79411105-79411124 None:intergenic 50.0%
GCTGACCAATTGTCAATGGC+TGG + chr8_1:79411105-79411124 Msa1217170:CDS 50.0%
CACTGTTGCTGCTATGTGAG+AGG - chr8_1:79411139-79411158 None:intergenic 50.0%
TGGGATGTTGGTCACCAGGT+GGG + chr8_1:79407970-79407989 Msa1217170:intron 55.0%
ATGTTGGTCACCAGGTGGGT+TGG + chr8_1:79407974-79407993 Msa1217170:intron 55.0%
GGCTGTTGGGAGAGATCTGA+AGG + chr8_1:79408591-79408610 Msa1217170:CDS 55.0%
!! GGTGATGGTGCTATGACAGC+GGG + chr8_1:79408643-79408662 Msa1217170:CDS 55.0%
GCTCTGCGTATGGATATCCG+CGG - chr8_1:79409171-79409190 None:intergenic 55.0%
GCAATACATGCTGCGATGGG+AGG + chr8_1:79409481-79409500 Msa1217170:CDS 55.0%
ATACATGCTGCGATGGGAGG+TGG + chr8_1:79409484-79409503 Msa1217170:CDS 55.0%
! GCTGCAGGTCTAGCTTGTGA+AGG + chr8_1:79409589-79409608 Msa1217170:CDS 55.0%
CTTGCAAAGGGCCTATGACC+AGG + chr8_1:79409645-79409664 Msa1217170:CDS 55.0%
! GCTTGGGTGGAGGGTTTTTG+AGG + chr8_1:79409737-79409756 Msa1217170:intron 55.0%
TATGGCATGCCTCCCCAACA+TGG + chr8_1:79410145-79410164 Msa1217170:CDS 55.0%
GAGCCATCACCACCATGTTG+GGG - chr8_1:79410160-79410179 None:intergenic 55.0%
GGAGCCATCACCACCATGTT+GGG - chr8_1:79410161-79410180 None:intergenic 55.0%
AGGAGCCATCACCACCATGT+TGG - chr8_1:79410162-79410181 None:intergenic 55.0%
ACAACTCGGTCGATCGTCGA+TGG - chr8_1:79410228-79410247 None:intergenic 55.0%
! CGAGTTGTTTCCGATACCCG+AGG + chr8_1:79410240-79410259 Msa1217170:CDS 55.0%
TTCCGATACCCGAGGGGAAA+TGG + chr8_1:79410248-79410267 Msa1217170:CDS 55.0%
! TGCCATTTCCCCTCGGGTAT+CGG - chr8_1:79410253-79410272 None:intergenic 55.0%
TACCCGAGGGGAAATGGCAT+TGG + chr8_1:79410254-79410273 Msa1217170:CDS 55.0%
! CACCAATGCCATTTCCCCTC+GGG - chr8_1:79410259-79410278 None:intergenic 55.0%
GAGTAGCCCTATTGGGCTAC+GGG + chr8_1:79410710-79410729 Msa1217170:CDS 55.0%
GCTCAGTTCATGGCCCTTGA+TGG + chr8_1:79410916-79410935 Msa1217170:CDS 55.0%
GACAACTATGCAGTGGAGGC+CGG + chr8_1:79411044-79411063 Msa1217170:intron 55.0%
TATCGGTCGGGAAGAACCAC+CGG - chr8_1:79411066-79411085 None:intergenic 55.0%
GTGGGATGTTGGTCACCAGG+TGG + chr8_1:79407969-79407988 Msa1217170:intron 60.0%
! TCAGCGGCTTGCTCTGCGTA+TGG - chr8_1:79409181-79409200 None:intergenic 60.0%
CCATCACCACCATGTTGGGG+AGG - chr8_1:79410157-79410176 None:intergenic 60.0%
! CCTCCCCAACATGGTGGTGA+TGG + chr8_1:79410154-79410173 Msa1217170:CDS 60.0%
ATCGTCGATGGCTGCTGCAG+TGG - chr8_1:79410216-79410235 None:intergenic 60.0%
GGCTGACCCGTAGCCCAATA+GGG - chr8_1:79410719-79410738 None:intergenic 60.0%
AACTATGCAGTGGAGGCCGG+TGG + chr8_1:79411047-79411066 Msa1217170:intron 60.0%
GCTGCGATGGGAGGTGGAAC+TGG + chr8_1:79409490-79409509 Msa1217170:CDS 65.0%
GGCATGCCTCCCCAACATGG+TGG + chr8_1:79410148-79410167 Msa1217170:CDS 65.0%
CGGCTGACCCGTAGCCCAAT+AGG - chr8_1:79410720-79410739 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 79407084 79411691 79407084 ID=Msa1217170;Name=Msa1217170
chr8_1 mRNA 79407084 79411691 79407084 ID=Msa1217170-mRNA-1;Parent=Msa1217170;Name=Msa1217170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=264|1|1|1|1|1|9|485|715
chr8_1 exon 79407084 79407608 79407084 ID=Msa1217170-mRNA-1:exon:27607;Parent=Msa1217170-mRNA-1
chr8_1 exon 79407823 79407987 79407823 ID=Msa1217170-mRNA-1:exon:27608;Parent=Msa1217170-mRNA-1
chr8_1 exon 79408093 79408243 79408093 ID=Msa1217170-mRNA-1:exon:27609;Parent=Msa1217170-mRNA-1
chr8_1 exon 79408587 79408858 79408587 ID=Msa1217170-mRNA-1:exon:27610;Parent=Msa1217170-mRNA-1
chr8_1 exon 79408938 79409211 79408938 ID=Msa1217170-mRNA-1:exon:27611;Parent=Msa1217170-mRNA-1
chr8_1 exon 79409359 79409666 79409359 ID=Msa1217170-mRNA-1:exon:27612;Parent=Msa1217170-mRNA-1
chr8_1 exon 79410035 79410316 79410035 ID=Msa1217170-mRNA-1:exon:27613;Parent=Msa1217170-mRNA-1
chr8_1 exon 79410676 79410960 79410676 ID=Msa1217170-mRNA-1:exon:27614;Parent=Msa1217170-mRNA-1
chr8_1 exon 79411057 79411691 79411057 ID=Msa1217170-mRNA-1:exon:27615;Parent=Msa1217170-mRNA-1
chr8_1 five_prime_UTR 79407084 79407347 79407084 ID=Msa1217170-mRNA-1:five_prime_utr;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79407348 79407608 79407348 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79407823 79407987 79407823 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79408093 79408243 79408093 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79408587 79408858 79408587 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79408938 79409211 79408938 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79409359 79409666 79409359 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79410035 79410316 79410035 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79410676 79410960 79410676 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 CDS 79411057 79411206 79411057 ID=Msa1217170-mRNA-1:cds;Parent=Msa1217170-mRNA-1
chr8_1 three_prime_UTR 79411207 79411691 79411207 ID=Msa1217170-mRNA-1:three_prime_utr;Parent=Msa1217170-mRNA-1
Gene Sequence

>Msa1217170

ATGGATCTCTGTTCATTAGCATGTCCTTCTTTTGTAACACCTTGTGATCCCAGAAGAACACTTCTTCTTCCTTCTTCTTCTCACTCTCAATGGGGTCTTCATTTCTTCGCTCACTCTCAACAACACAACAAACTCAAGAAAAAGATTGGTGTTGTTCATGCTTCACTTTCTGAGATGGGAGAATATTATTCTCAAAGACCTCCTACTCCATTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTCTCCACCAAGGAGCTGAAACAGCTTGCGGATGAACTACGTTCTGATGTTATTTTCAGTGTTTCAAGAACTGGGGGACATTTAGGTTCAAGTTTAGGTGTTGTTGAACTTACTATTGCTCTTCACTATGTTTTTAATACACCTCAGGATAAGATTTTGTGGGATGTTGGTCACCAGTCATATCCTCATAAAATACTTACTGGTAGAAGGGATAAGATGCATACCATGAGACAGACTAATGGGTTATCTGGATTTACAAAACGTTCTGAGAGTGAATATGATTCTTTTGGCACTGGTCATAGTTCAACTACTATTTCAGCTGGACTTGGAATGGCTGTTGGGAGAGATCTGAAGGGAAGAAAGAATGATGTAGTTGCTGTTATTGGTGATGGTGCTATGACAGCGGGTCAAGCTTATGAAGCTATGAACAATGCTGGATATCTTGATTCTGATATGATTGTAATTTTGAATGACAACAAACAAGTTTCTTTACCAACTGCTACTCTTGATGGACCTATACCACCTGTAGGAGCTTTGAGTAGTGCTCTAAGTAGGTTACAATCAAACAAACCTCTTAGAGAATTGAGAGAGGTTGCAAAGGGAGTAACAAAACGAATTGGAGGTCCTATGCATGAATTGGCTGCGAAAGTTGACGAGTATGCTCGTGGTATGATCAGTGGTACTGGATCAACACTTTTTGAAGAGCTTGGACTCTACTATATCGGTCCTGTTGATGGTCATAACATAGATGATCTAGTTGCCATTCTCAAAGAAGTCAAAACTACTAATAGTACCGGTCCTGTATTGATCCATGTTATCACCGAAAAAGGCCGCGGATATCCATACGCAGAGCAAGCCGCTGACAAGTATCATGGAGTTACCAAGTTTGATCCACCAACTGGAAAGCAATTCAAAGCAACGGCTAAAACGCAGTCTTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCAAAGCTGACAAAGATATTATCGCAATACATGCTGCGATGGGAGGTGGAACTGGCATGAATCTCTTCCATCGCCGATTCCCAACAAGATGCTTTGACGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCAGGTCTAGCTTGTGAAGGCCTTAAGCCTTTTTGTGCAATATACTCATCATTCTTGCAAAGGGCCTATGACCAGGTGGTACATGATGTGGATTTGCAAAAGCTTCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGATCAGATGGTCCTACACATTGTGGTTCTTTTGACGTCACTTTTATGGCATGCCTCCCCAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTGTCACATGGTTGCCACTGCAGCAGCCATCGACGATCGACCGAGTTGTTTCCGATACCCGAGGGGAAATGGCATTGGTGTTGAACTTCCAGCAGAGTACAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTAATTGAAGGAGAAAGAGTAGCCCTATTGGGCTACGGGTCAGCCGTTCAGAACTGTTTGGCTGCTGCTTCCTTAGTTGAACAACATGGCTTGCGCTTAACTGTTGCCGATGCACGTTTCTGCAAGCCATTGGATCGATCCTTGATTCGCAGTCTGGCAAAATCACATGAGGTTCTGATCACCGTAGAAGAAGGATCAATTGGAGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCCTTGATGGTCTTTTAGATGGAAATTTGAAGTGGAGGCCGGTGGTTCTTCCCGACCGATATATTGACCATGGATCACCTGCTGACCAATTGTCAATGGCTGGTCTTACACCCTCTCACATAGCAGCAACAGTGTTCAACATACTTGGACAAACAAGAGAGGCATTAGAGGTCATGTCATAA
Protein sequence

>Msa1217170

MDLCSLACPSFVTPCDPRRTLLLPSSSHSQWGLHFFAHSQQHNKLKKKIGVVHASLSEMGEYYSQRPPTPLLDTINYPIHMKNLSTKELKQLADELRSDVIFSVSRTGGHLGSSLGVVELTIALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLKGRKNDVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNKPLRELREVAKGVTKRIGGPMHELAAKVDEYARGMISGTGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKTTNSTGPVLIHVITEKGRGYPYAEQAADKYHGVTKFDPPTGKQFKATAKTQSYTTYFAEALIAEAKADKDIIAIHAAMGGGTGMNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDRAGLVGSDGPTHCGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVELPAEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVEQHGLRLTVADARFCKPLDRSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPADQLSMAGLTPSHIAATVFNILGQTREALEVMS*