AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1216820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216820 MtrunA17_Chr4g0066611 97.914 719 13 1 1 719 1 717 0.0 1454
Msa1216820 MtrunA17_Chr2g0286641 80.114 704 131 2 16 719 21 715 0.0 1155
Msa1216820 MtrunA17_Chr8g0367201 71.736 651 184 0 65 715 58 708 0.0 1008
Msa1216820 MtrunA17_Chr8g0367181 72.043 651 182 0 65 715 58 708 0.0 1007
Msa1216820 MtrunA17_Chr3g0138171 62.158 658 243 4 62 718 54 706 0.0 826
Msa1216820 MtrunA17_Chr7g0214101 25.091 275 186 7 389 646 19 290 6.04e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216820 AT4G15560.1 86.140 671 93 0 45 715 46 716 0.0 1213
Msa1216820 AT3G21500.3 73.846 715 134 3 1 715 13 674 0.0 1072
Msa1216820 AT3G21500.2 73.881 670 122 3 1 670 13 629 0.0 1002
Msa1216820 AT3G21500.1 73.731 670 122 4 1 670 13 628 0.0 996
Msa1216820 AT5G11380.1 56.369 683 271 8 39 719 43 700 0.0 762
Msa1216820 AT5G11380.3 52.930 546 230 8 39 582 43 563 0.0 561
Msa1216820 AT5G11380.2 54.080 527 216 7 39 563 43 545 0.0 558
Msa1216820 AT5G11380.4 54.175 515 210 7 39 551 43 533 0.0 541
Msa1216820 AT5G50850.1 25.088 283 192 7 381 646 19 298 8.77e-12 67.8

Find 199 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTATTATAATATTAT+TGG 0.135713 8_1:-78832373 None:intergenic
GGACTGGAGAATTGAAATTA+TGG 0.234238 8_1:-78832316 None:intergenic
TCGGAACTTCAGCAAAATTA+TGG 0.235014 8_1:-78836618 None:intergenic
GAAGGATCAATTGGAGGATT+TGG 0.241782 8_1:+78836116 Msa1216820:CDS
AAGCGATACCGTTCAAATTT+CGG 0.245290 8_1:-78836811 None:intergenic
TTCTCATGTTGCTCAGTTCA+TGG 0.260981 8_1:+78836139 Msa1216820:CDS
AGGAAGAAGAAGTGTTCTTC+TGG 0.261298 8_1:-78832589 None:intergenic
GATCCATAACAAACAGAAAA+TGG 0.262473 8_1:-78832524 None:intergenic
CTTCTTCTTCTCACCCTCAA+TGG 0.266397 8_1:+78832622 Msa1216820:CDS
ATCCATGTTATCACCGAAAA+AGG 0.271169 8_1:+78834331 Msa1216820:CDS
TTACCAACTGCTACTCTTGA+TGG 0.271724 8_1:+78833934 Msa1216820:CDS
ATAAAATACTTACTGGTAGA+AGG 0.289805 8_1:+78833290 Msa1216820:CDS
GAGAGTGAATATGATTCTTT+TGG 0.294675 8_1:+78833370 Msa1216820:CDS
CTGTCCATTGCAAATCTTAC+AGG 0.302421 8_1:-78835298 None:intergenic
CGGCTGACCCGTAGCCCAAT+AGG 0.305029 8_1:-78835950 None:intergenic
TTCTTCTTCTCACCCTCAAT+GGG 0.310040 8_1:+78832623 Msa1216820:CDS
GAATAGTCCAAGACAAAATA+AGG 0.322569 8_1:-78836893 None:intergenic
GCTCAGTTCATGGCCCTTGA+TGG 0.326804 8_1:+78836149 Msa1216820:CDS
AATGATGTAGCTGCTGTTAT+TGG 0.327270 8_1:+78833808 Msa1216820:CDS
GGACATTTAGGTTCAAGTTT+AGG 0.343066 8_1:+78833075 Msa1216820:CDS
TATTATATTATATAGTAGTA+TGG 0.345452 8_1:-78832400 None:intergenic
GATAATATCTTTGTCAGCTT+TGG 0.345890 8_1:-78834644 None:intergenic
TTGTTATTCTACCTGGTCAT+AGG 0.354959 8_1:-78834842 None:intergenic
TATAATATTATTGGTTAAGA+AGG 0.358991 8_1:-78832364 None:intergenic
GATGAGTATATTGCACAAAA+AGG 0.361483 8_1:-78834805 None:intergenic
TATCCTCATAAAATACTTAC+TGG 0.370362 8_1:+78833283 Msa1216820:CDS
GAGAATTGAAATTATGGGTT+GGG 0.376880 8_1:-78832310 None:intergenic
GGAGCCATCACCACCATGTT+GGG 0.392304 8_1:-78835391 None:intergenic
TACTATATCGGTCCTGTTGA+TGG 0.393097 8_1:+78834238 Msa1216820:CDS
ATAATACTAACTAATTATAA+AGG 0.398059 8_1:+78836711 Msa1216820:three_prime_UTR
ACCTCTCTCAATTCTCTAAG+AGG 0.402113 8_1:-78834015 None:intergenic
TTCCGATACCCGAGGGGAAA+TGG 0.408784 8_1:+78835481 Msa1216820:CDS
AGGAGAAAGAGTAGCCCTAT+TGG 0.409345 8_1:+78835935 Msa1216820:CDS
TAGGGAGTAACAAAACGAAT+TGG 0.410575 8_1:+78834121 Msa1216820:intron
TCGATCCTTGATTCGCAGTC+TGG 0.418420 8_1:+78836061 Msa1216820:CDS
AGACAGACTAATGGGTTGTC+TGG 0.427529 8_1:+78833331 Msa1216820:CDS
TCATGCTTCACTTTCTGAGA+TGG 0.428620 8_1:+78832707 Msa1216820:CDS
CAAAGCTCCTACAGGTGGTA+TGG 0.431505 8_1:-78833959 None:intergenic
TTGTCAAATAGTTGCATGTA+TGG 0.431670 8_1:+78836565 Msa1216820:three_prime_UTR
CATGCTTCACTTTCTGAGAT+GGG 0.434339 8_1:+78832708 Msa1216820:CDS
ACCGTAGAAGAAGGATCAAT+TGG 0.435054 8_1:+78836107 Msa1216820:CDS
CAAAGCATCTTGTTGGGAAT+CGG 0.442480 8_1:-78834717 None:intergenic
TTTAACAGATTGGGAAAGGT+AGG 0.444040 8_1:+78835901 Msa1216820:intron
GAGCTTGGACTCTACTATAT+CGG 0.444711 8_1:+78834226 Msa1216820:CDS
GGAGAAAGAGTAGCCCTATT+GGG 0.447212 8_1:+78835936 Msa1216820:CDS
CCCACGTCAAAGCATCTTGT+TGG 0.447447 8_1:-78834724 None:intergenic
TTGAATTGCTTTCCAGTTGG+TGG 0.448517 8_1:-78834562 None:intergenic
GCTGCGATGGGAGGTGGAAC+TGG 0.448982 8_1:+78834676 Msa1216820:CDS
TCCAGTTGGTGGATCAAACT+TGG 0.452909 8_1:-78834551 None:intergenic
ATGGACAGAGCTGGATTAGT+TGG 0.453708 8_1:+78835313 Msa1216820:CDS
TGCCATTTCCCCTCGGGTAT+CGG 0.457752 8_1:-78835483 None:intergenic
ACCAAGTTTGATCCACCAAC+TGG 0.463045 8_1:+78834550 Msa1216820:CDS
AACCAATAGGAATGGCTGTT+GGG 0.466377 8_1:+78833764 Msa1216820:intron
GCAACAGTGTTCAACATACT+TGG 0.468649 8_1:+78836383 Msa1216820:CDS
TGCACGTTTCTGCAAGCCAT+TGG 0.468795 8_1:+78836037 Msa1216820:CDS
GCCATTGACAATTGGTCAGC+AGG 0.472373 8_1:-78836335 None:intergenic
TTAGTATTATAGTGCACGTA+TGG 0.476075 8_1:-78836698 None:intergenic
ACAACAACCTTTGTTTGTGT+TGG 0.477977 8_1:-78832438 None:intergenic
TGGAGGTCCTATGCATGAAT+TGG 0.478037 8_1:+78834141 Msa1216820:CDS
ATACCATGAGACAGACTAAT+GGG 0.482047 8_1:+78833323 Msa1216820:CDS
GGAAGAAGAAGTGTTCTTCT+GGG 0.482567 8_1:-78832588 None:intergenic
GACTGGAGAATTGAAATTAT+GGG 0.483848 8_1:-78832315 None:intergenic
GTCAGCCGTTCAGAACTGTT+TGG 0.487689 8_1:+78835965 Msa1216820:CDS
ATACATGCTGCGATGGGAGG+TGG 0.489733 8_1:+78834670 Msa1216820:CDS
CACCAATGCCATTTCCCCTC+GGG 0.491891 8_1:-78835489 None:intergenic
TAAGACCAGCCATTGACAAT+TGG 0.492812 8_1:-78836343 None:intergenic
ATGTTGTATCGTGTATATTG+AGG 0.493168 8_1:-78836472 None:intergenic
CCACGTCAAAGCATCTTGTT+GGG 0.494671 8_1:-78834723 None:intergenic
CCTCCCCAACATGGTGGTGA+TGG 0.495137 8_1:+78835387 Msa1216820:CDS
AGAATTGAGAGAGGTTGCAA+AGG 0.496003 8_1:+78834023 Msa1216820:CDS
TCAGCGGCTTGCTCTGCGTA+TGG 0.497079 8_1:-78834364 None:intergenic
ACTACTATTTCAGCTGGACT+TGG 0.499592 8_1:+78833409 Msa1216820:CDS
GTGATAACATGGATCAATAC+AGG 0.499825 8_1:-78834322 None:intergenic
TCCAATTGATCCTTCTTCTA+CGG 0.501095 8_1:-78836108 None:intergenic
TGTTGTATCGTGTATATTGA+GGG 0.501224 8_1:-78836471 None:intergenic
CATACCATGAGACAGACTAA+TGG 0.501531 8_1:+78833322 Msa1216820:CDS
ACAAACAAGAGAGGCATTAG+AGG 0.503095 8_1:+78836406 Msa1216820:CDS
CGTGGTATGATCAGTGGTAC+TGG 0.504327 8_1:+78834187 Msa1216820:CDS
GGAGAATTGAAATTATGGGT+TGG 0.505814 8_1:-78832311 None:intergenic
ATCGTCGATGGCTGCTGCAG+TGG 0.507645 8_1:-78835446 None:intergenic
CTTTGAGTAGTGCTCTAAGT+AGG 0.507922 8_1:+78833977 Msa1216820:CDS
GTGATCCATGGTCAATATAT+CGG 0.508554 8_1:-78836313 None:intergenic
ATACTCATCATTCTTGCAAA+GGG 0.512668 8_1:+78834819 Msa1216820:CDS
GGAATGCCTTTGTACTCGGC+TGG 0.514100 8_1:-78835520 None:intergenic
TCTATGTTATGACCATCAAC+AGG 0.515677 8_1:-78834250 None:intergenic
GGCTGTTGGGAGAGATCTGA+AGG 0.516771 8_1:+78833777 Msa1216820:CDS
GCAAAATTATGGTGTCATTG+AGG 0.518092 8_1:-78836607 None:intergenic
GAGTAGCCCTATTGGGCTAC+GGG 0.519027 8_1:+78835943 Msa1216820:CDS
CAAGCCATGTTGTTCAACTA+AGG 0.519980 8_1:-78835997 None:intergenic
AAGAGGAATGCCTTTGTACT+CGG 0.521348 8_1:-78835524 None:intergenic
GACAACTATGCAGTGGAGGC+CGG 0.522608 8_1:+78836277 Msa1216820:intron
CTTGCAAAGGGCCTATGACC+AGG 0.524812 8_1:+78834831 Msa1216820:CDS
AGATTTGCAATGGACAGAGC+TGG 0.525132 8_1:+78835304 Msa1216820:CDS
AGTTCAACTACTATTTCAGC+TGG 0.526493 8_1:+78833403 Msa1216820:CDS
GGCTGACCCGTAGCCCAATA+GGG 0.528076 8_1:-78835949 None:intergenic
GTAGCTGCTGTTATTGGTGA+TGG 0.528641 8_1:+78833814 Msa1216820:CDS
ACACCAATGCCATTTCCCCT+CGG 0.529099 8_1:-78835490 None:intergenic
TACCCGAGGGGAAATGGCAT+TGG 0.530322 8_1:+78835487 Msa1216820:CDS
GCTGACCAATTGTCAATGGC+TGG 0.531698 8_1:+78836338 Msa1216820:CDS
GCACTACTCAAAGCTCCTAC+AGG 0.533764 8_1:-78833967 None:intergenic
GAACCAATAGGAATGGCTGT+TGG 0.533777 8_1:+78833763 Msa1216820:intron
CAAAGCTCTGCTTCATCAGA+AGG 0.534683 8_1:-78835412 None:intergenic
ACCTGCTGACCAATTGTCAA+TGG 0.535095 8_1:+78836334 Msa1216820:CDS
TTCCATCTAAAAGACCATCA+AGG 0.536693 8_1:-78836163 None:intergenic
TTTGTGGGATGTTGGTCACC+AGG 0.538468 8_1:+78833155 Msa1216820:CDS
TATGAAGCTATGAACAATGC+TGG 0.538515 8_1:+78833859 Msa1216820:CDS
GCTTCCTGTAAGATTTGCAA+TGG 0.538600 8_1:+78835294 Msa1216820:CDS
GTCAAAACTACTAATAGTAC+CGG 0.538944 8_1:+78834298 Msa1216820:CDS
CCATGGTCAATATATCGGTC+GGG 0.539704 8_1:-78836308 None:intergenic
TAAAATACTTACTGGTAGAA+GGG 0.540493 8_1:+78833291 Msa1216820:CDS
AGGAGCCATCACCACCATGT+TGG 0.540606 8_1:-78835392 None:intergenic
TCACAAGGTGTTACAAAAGA+AGG 0.540930 8_1:-78832564 None:intergenic
AGAGTAGCCCTATTGGGCTA+CGG 0.541980 8_1:+78835942 Msa1216820:CDS
GTACAAAGGCATTCCTCTTG+AGG 0.542688 8_1:+78835528 Msa1216820:CDS
TATCGCAATACATGCTGCGA+TGG 0.543634 8_1:+78834663 Msa1216820:CDS
AAAGGTAGGATACTAATTGA+AGG 0.544500 8_1:+78835915 Msa1216820:CDS
CATGCCGTTACATTTGCTGC+AGG 0.547176 8_1:+78834760 Msa1216820:CDS
CCAACAAGATGCTTTGACGT+GGG 0.550307 8_1:+78834724 Msa1216820:CDS
CGTTCAGAACTGTTTGGCTG+CGG 0.550458 8_1:+78835971 Msa1216820:CDS
TATACTCATCATTCTTGCAA+AGG 0.554665 8_1:+78834818 Msa1216820:CDS
GGAGTAACAAAACGAATTGG+AGG 0.556176 8_1:+78834124 Msa1216820:CDS
CTCGGGTATCGGAAACAACT+CGG 0.556658 8_1:-78835472 None:intergenic
GCTGCAGGTCTAGCTTGTGA+AGG 0.558594 8_1:+78834775 Msa1216820:CDS
ATATTAACCAACACAAACAA+AGG 0.565171 8_1:+78832431 Msa1216820:five_prime_UTR
GTTCTGATCACCGTAGAAGA+AGG 0.565510 8_1:+78836098 Msa1216820:CDS
GCTGGATTAGTTGGATCAGA+TGG 0.566290 8_1:+78835322 Msa1216820:CDS
TCCATGGTCAATATATCGGT+CGG 0.567471 8_1:-78836309 None:intergenic
TCCATCTAAAAGACCATCAA+GGG 0.567878 8_1:-78836162 None:intergenic
TATGGCATGCCTCCCCAACA+TGG 0.569047 8_1:+78835378 Msa1216820:CDS
AAAGCTCCTACAGGTGGTAT+GGG 0.573650 8_1:-78833958 None:intergenic
CGAATCAAGGATCGATCCAA+TGG 0.575852 8_1:-78836053 None:intergenic
TAGTTAATAGTGTCAAGTAA+TGG 0.576385 8_1:-78832759 None:intergenic
ATCTTGTTGGGAATCGGCGA+TGG 0.577057 8_1:-78834711 None:intergenic
AGAAATGAAGACCCCATTGA+GGG 0.577806 8_1:-78832635 None:intergenic
CCCAACAAGATGCTTTGACG+TGG 0.578877 8_1:+78834723 Msa1216820:CDS
TATCGGTCGGGAAGAACCAC+CGG 0.579648 8_1:-78836296 None:intergenic
TTCAGTGTTTCAAGAACTGG+GGG 0.580278 8_1:+78833054 Msa1216820:CDS
TATCTAAACCGAAATTTGAA+CGG 0.581558 8_1:+78836803 Msa1216820:three_prime_UTR
ATTGGTCAGCAGGTGATCCA+TGG 0.582909 8_1:-78836325 None:intergenic
ATAGTGTCAAGTAATGGAGT+AGG 0.583027 8_1:-78832753 None:intergenic
GTGTCAAGTAATGGAGTAGG+AGG 0.583729 8_1:-78832750 None:intergenic
CACTGTTGCTGCTATGTGAG+AGG 0.583769 8_1:-78836369 None:intergenic
ATCGCAATACATGCTGCGAT+GGG 0.585240 8_1:+78834664 Msa1216820:CDS
GCTTTGAATTGCTTTCCAGT+TGG 0.585632 8_1:-78834565 None:intergenic
TGAGTGAAGTAGTACCTTGG+TGG 0.585939 8_1:-78832805 None:intergenic
ACCACAGGTGGTACATGATG+TGG 0.589888 8_1:+78835261 Msa1216820:intron
GTAGAAGAAGGATCAATTGG+AGG 0.595008 8_1:+78836110 Msa1216820:CDS
TGATTGTGAACGAAGTGGAC+TGG 0.596202 8_1:-78832332 None:intergenic
AACATGGATCAATACAGGAC+CGG 0.598177 8_1:-78834317 None:intergenic
GGTGATGGTGCTATGACAGC+GGG 0.598232 8_1:+78833829 Msa1216820:CDS
CAACAAGATGCTTTGACGTG+GGG 0.598949 8_1:+78834725 Msa1216820:CDS
CAAGCCGCTGACAAGTATCA+TGG 0.599890 8_1:+78834376 Msa1216820:CDS
TTCGCAGCCAATTCATGCAT+AGG 0.601604 8_1:-78834148 None:intergenic
AAAAGATTGCTAATTTGCAG+AGG 0.602055 8_1:+78836840 Msa1216820:three_prime_UTR
ACAACTCGGTCGATCGTCGA+TGG 0.606839 8_1:-78835458 None:intergenic
CGCAGCCAAACAGTTCTGAA+CGG 0.607768 8_1:-78835970 None:intergenic
CGGTTTAGATAACAGAAATG+CGG 0.610437 8_1:-78836791 None:intergenic
CAACCCATTAGTCTGTCTCA+TGG 0.610964 8_1:-78833326 None:intergenic
AAGAAATGAAGACCCCATTG+AGG 0.611932 8_1:-78832636 None:intergenic
CCCGACCGATATATTGACCA+TGG 0.612239 8_1:+78836308 Msa1216820:CDS
GCAATACATGCTGCGATGGG+AGG 0.614477 8_1:+78834667 Msa1216820:CDS
TTACACAACATACTTTGCAG+AGG 0.619468 8_1:+78834606 Msa1216820:CDS
ATTGGTTAAGAAGGAGACGT+GGG 0.620865 8_1:-78832355 None:intergenic
GAGCCATCACCACCATGTTG+GGG 0.622407 8_1:-78835390 None:intergenic
TGGAAAGCAATTCAAAGCAA+CGG 0.628196 8_1:+78834570 Msa1216820:CDS
GAACTTCCAGCCGAGTACAA+AGG 0.631347 8_1:+78835514 Msa1216820:CDS
TGGTGATGGTGCTATGACAG+CGG 0.633316 8_1:+78833828 Msa1216820:CDS
TTTCAGTGTTTCAAGAACTG+GGG 0.633346 8_1:+78833053 Msa1216820:CDS
TCTTCTTCTCACCCTCAATG+GGG 0.633751 8_1:+78832624 Msa1216820:CDS
CCATCACCACCATGTTGGGG+AGG 0.634531 8_1:-78835387 None:intergenic
ATTATTTAACTAGATAACGC+AGG 0.635299 8_1:+78836542 Msa1216820:three_prime_UTR
GAGTTGTTTCCGATACCCGA+GGG 0.637112 8_1:+78835474 Msa1216820:CDS
AGTGTTCTTCTGGGATCACA+AGG 0.638544 8_1:-78832579 None:intergenic
TGAAGCAGAGCTTTGTCACA+TGG 0.638669 8_1:+78835420 Msa1216820:CDS
TAGACCTGCAGCAAATGTAA+CGG 0.641986 8_1:-78834764 None:intergenic
CGAGTTGTTTCCGATACCCG+AGG 0.642120 8_1:+78835473 Msa1216820:CDS
GCTTCCTTAGTTGAACAACA+TGG 0.642813 8_1:+78835993 Msa1216820:CDS
TCAGATGGTCCTACACATTG+TGG 0.645337 8_1:+78835337 Msa1216820:CDS
AACTATGCAGTGGAGGCCGG+TGG 0.646065 8_1:+78836280 Msa1216820:intron
TCCCACAAAATCTTATCCTG+AGG 0.647268 8_1:-78833141 None:intergenic
TGGCTTGCAGAAACGTGCAT+CGG 0.647415 8_1:-78836033 None:intergenic
TATTGGTTAAGAAGGAGACG+TGG 0.647941 8_1:-78832356 None:intergenic
TCAAAAGAACCACAATGTGT+AGG 0.648738 8_1:-78835346 None:intergenic
GTTGTATCGTGTATATTGAG+GGG 0.654052 8_1:-78836470 None:intergenic
GATGGACCCATACCACCTGT+AGG 0.656771 8_1:+78833952 Msa1216820:CDS
ACTGTTGCTGCTATGTGAGA+GGG 0.660707 8_1:-78836368 None:intergenic
CAGTCTGGCAAAATCACATG+AGG 0.662811 8_1:+78836076 Msa1216820:CDS
GGTCCATCAAGAGTAGCAGT+TGG 0.666861 8_1:-78833937 None:intergenic
ACAGGAGCTGAAACAGCTTG+CGG 0.674251 8_1:+78833008 Msa1216820:intron
TATGCTCGTGGTATGATCAG+TGG 0.678017 8_1:+78834181 Msa1216820:CDS
AAAGTTGACGAGTATGCTCG+TGG 0.686551 8_1:+78834169 Msa1216820:CDS
ACCTCTTAGAGAATTGAGAG+AGG 0.689978 8_1:+78834014 Msa1216820:CDS
CTACTCAAAGCTCCTACAGG+TGG 0.693731 8_1:-78833964 None:intergenic
GTGGGTGATTGTGAACGAAG+TGG 0.699805 8_1:-78832337 None:intergenic
CATACTTGGACAAACAAGAG+AGG 0.703939 8_1:+78836397 Msa1216820:CDS
ATTACCATGATACTTGTCAG+CGG 0.708984 8_1:-78834380 None:intergenic
GCTGTTGGGAGAGATCTGAA+GGG 0.712298 8_1:+78833778 Msa1216820:CDS
AGTTGTTTCCGATACCCGAG+GGG 0.719126 8_1:+78835475 Msa1216820:CDS
GGCATGCCTCCCCAACATGG+TGG 0.744567 8_1:+78835381 Msa1216820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAATTATTTAAATTA+AGG - chr8_1:78835062-78835081 None:intergenic 0.0%
!! TATTATATTATATAGTAGTA+TGG - chr8_1:78832403-78832422 None:intergenic 10.0%
!!! CAATTTTTTCAAATTAATAT+CGG + chr8_1:78833549-78833568 Msa1216820:intron 10.0%
!!! GAAAATATGTAAATTTTATA+GGG - chr8_1:78835640-78835659 None:intergenic 10.0%
!!! TGAAAATATGTAAATTTTAT+AGG - chr8_1:78835641-78835660 None:intergenic 10.0%
!! ATAATACTAACTAATTATAA+AGG + chr8_1:78836711-78836730 Msa1216820:three_prime_UTR 10.0%
!!! TATAATATTATTGGTTAAGA+AGG - chr8_1:78832367-78832386 None:intergenic 15.0%
!!! CGATATTAATTTGAAAAAAT+TGG - chr8_1:78833551-78833570 None:intergenic 15.0%
!! ATATTTACTTGAATGAATAA+TGG + chr8_1:78833657-78833676 Msa1216820:intron 15.0%
!!! TGACAAAATGATATTTTTAT+AGG + chr8_1:78834102-78834121 Msa1216820:intron 15.0%
!!! GACAAAATGATATTTTTATA+GGG + chr8_1:78834103-78834122 Msa1216820:intron 15.0%
!! GTAATTGTTCAAAATATATA+AGG - chr8_1:78834409-78834428 None:intergenic 15.0%
!!! TATAACTTTTTTCATATGAT+GGG - chr8_1:78834875-78834894 None:intergenic 15.0%
!!! CATAAATTTTTCAAAATGTT+GGG - chr8_1:78835103-78835122 None:intergenic 15.0%
!!! AACATTTTGAAAAATTTATG+CGG + chr8_1:78835103-78835122 Msa1216820:intron 15.0%
!! AATTGAACAAAATTTATGTA+GGG - chr8_1:78835671-78835690 None:intergenic 15.0%
!! AAATTGAACAAAATTTATGT+AGG - chr8_1:78835672-78835691 None:intergenic 15.0%
!! TTTAATGTTTACATTGAAAA+GGG - chr8_1:78836215-78836234 None:intergenic 15.0%
!! ATTTAATGTTTACATTGAAA+AGG - chr8_1:78836216-78836235 None:intergenic 15.0%
!!! AATTTTGAAAAACAACATTT+CGG - chr8_1:78836640-78836659 None:intergenic 15.0%
!!! AATTTTTGAATGATTGATAC+AGG + chr8_1:78832990-78833009 Msa1216820:intron 20.0%
!!! AATGATGTGATATTTTGATT+TGG + chr8_1:78833718-78833737 Msa1216820:intron 20.0%
!!! TTTTGATTTGGATTTAACTT+TGG + chr8_1:78833730-78833749 Msa1216820:intron 20.0%
!!! GTATAACTTTTTTCATATGA+TGG - chr8_1:78834876-78834895 None:intergenic 20.0%
!!! GCATAAATTTTTCAAAATGT+TGG - chr8_1:78835104-78835123 None:intergenic 20.0%
!!! AATTTTAATTTTACCTCAAG+AGG - chr8_1:78835544-78835563 None:intergenic 20.0%
!!! TAAGTTGATCAAATTTATGT+AGG + chr8_1:78835774-78835793 Msa1216820:intron 20.0%
!!! AAGTTGATCAAATTTATGTA+GGG + chr8_1:78835775-78835794 Msa1216820:intron 20.0%
!! TGACTAAAAATATATTCAAC+TGG + chr8_1:78835834-78835853 Msa1216820:intron 20.0%
!!! TTCTGATATTTTAACAGATT+GGG + chr8_1:78835892-78835911 Msa1216820:intron 20.0%
!! ATGTCATAAGAAAAATACAA+AGG + chr8_1:78836431-78836450 Msa1216820:exon 20.0%
!! TGTCATAAGAAAAATACAAA+GGG + chr8_1:78836432-78836451 Msa1216820:exon 20.0%
! ATATTAACCAACACAAACAA+AGG + chr8_1:78832431-78832450 Msa1216820:five_prime_UTR 25.0%
! AACAAACTCAAGAAAAAGAT+TGG + chr8_1:78832678-78832697 Msa1216820:CDS 25.0%
! TAGTTAATAGTGTCAAGTAA+TGG - chr8_1:78832762-78832781 None:intergenic 25.0%
! ATTGTCTCTTATATATGAAC+CGG - chr8_1:78832835-78832854 None:intergenic 25.0%
!! TATGTTGTTTATGTTTGTTG+AGG + chr8_1:78833189-78833208 Msa1216820:intron 25.0%
! ATAAGATTTCAATTCACAAC+AGG - chr8_1:78833233-78833252 None:intergenic 25.0%
! TATCCTCATAAAATACTTAC+TGG + chr8_1:78833283-78833302 Msa1216820:CDS 25.0%
! ATAAAATACTTACTGGTAGA+AGG + chr8_1:78833290-78833309 Msa1216820:CDS 25.0%
! TAAAATACTTACTGGTAGAA+GGG + chr8_1:78833291-78833310 Msa1216820:CDS 25.0%
! GGAAGAACTAAATAACTAAA+TGG - chr8_1:78833530-78833549 None:intergenic 25.0%
!! TGAATAATGGAATTGAAAGA+TGG + chr8_1:78833670-78833689 Msa1216820:intron 25.0%
!! GTATGATATCTATACTTTTG+AGG + chr8_1:78834897-78834916 Msa1216820:intron 25.0%
! TATTAATTGATCATGTGTCT+TGG - chr8_1:78835000-78835019 None:intergenic 25.0%
!! ATATCCTCTTGTAGAATTTT+AGG + chr8_1:78835580-78835599 Msa1216820:intron 25.0%
!! TTTTATTGATACCAAGTACA+GGG + chr8_1:78835707-78835726 Msa1216820:intron 25.0%
! ATAAAACTTCACGATAAATG+AGG - chr8_1:78835742-78835761 None:intergenic 25.0%
!!! TCGTGAAGTTTTATAAAAGT+AGG + chr8_1:78835748-78835767 Msa1216820:intron 25.0%
!!! CGTGAAGTTTTATAAAAGTA+GGG + chr8_1:78835749-78835768 Msa1216820:intron 25.0%
!!! GTTCTGATATTTTAACAGAT+TGG + chr8_1:78835891-78835910 Msa1216820:intron 25.0%
!!! ATATTTTAACAGATTGGGAA+AGG + chr8_1:78835897-78835916 Msa1216820:intron 25.0%
!! TCTTTTAGATGGAAATTTGA+AGG + chr8_1:78836172-78836191 Msa1216820:CDS 25.0%
! GTCATAAGAAAAATACAAAG+GGG + chr8_1:78836433-78836452 Msa1216820:exon 25.0%
! ATTATTTAACTAGATAACGC+AGG + chr8_1:78836542-78836561 Msa1216820:three_prime_UTR 25.0%
!!! AAAGTCTTAACTTTTTCTTG+CGG + chr8_1:78836754-78836773 Msa1216820:three_prime_UTR 25.0%
! TATCTAAACCGAAATTTGAA+CGG + chr8_1:78836803-78836822 Msa1216820:three_prime_UTR 25.0%
!!! TTAAGAACCTTATTTTGTCT+TGG + chr8_1:78836886-78836905 Msa1216820:three_prime_UTR 25.0%
GAGAATTGAAATTATGGGTT+GGG - chr8_1:78832313-78832332 None:intergenic 30.0%
GACTGGAGAATTGAAATTAT+GGG - chr8_1:78832318-78832337 None:intergenic 30.0%
!! CTTCCATTTTCTGTTTGTTA+TGG + chr8_1:78832521-78832540 Msa1216820:exon 30.0%
GATCCATAACAAACAGAAAA+TGG - chr8_1:78832527-78832546 None:intergenic 30.0%
! AGAGATTTTTCATGTGGATT+GGG - chr8_1:78832785-78832804 None:intergenic 30.0%
! TGACTTAATTTTCTCTACGA+AGG + chr8_1:78832907-78832926 Msa1216820:intron 30.0%
! GACTTAATTTTCTCTACGAA+GGG + chr8_1:78832908-78832927 Msa1216820:intron 30.0%
!! ATGTTGTTTCTGAATGTCAT+TGG + chr8_1:78832954-78832973 Msa1216820:intron 30.0%
! ATTTTCAGTGTTTCAAGAAC+TGG + chr8_1:78833051-78833070 Msa1216820:CDS 30.0%
! TTTTCAGTGTTTCAAGAACT+GGG + chr8_1:78833052-78833071 Msa1216820:CDS 30.0%
!! CTATGTTTTTAATACACCTC+AGG + chr8_1:78833125-78833144 Msa1216820:CDS 30.0%
! CTACCAGTAAGTATTTTATG+AGG - chr8_1:78833289-78833308 None:intergenic 30.0%
! GAGAGTGAATATGATTCTTT+TGG + chr8_1:78833370-78833389 Msa1216820:CDS 30.0%
TAATTCTTCTCTCTACTATC+TGG + chr8_1:78833432-78833451 Msa1216820:intron 30.0%
ATCACATCATTGAACTAGAA+AGG - chr8_1:78833709-78833728 None:intergenic 30.0%
TTGTATTGAACCAATAGGAA+TGG + chr8_1:78833756-78833775 Msa1216820:intron 30.0%
!!! AGTTTTGACTTCTTTGAGAA+TGG - chr8_1:78834287-78834306 None:intergenic 30.0%
GTCAAAACTACTAATAGTAC+CGG + chr8_1:78834298-78834317 Msa1216820:CDS 30.0%
ATTCAATATGCTTCTAGTGA+TGG - chr8_1:78834435-78834454 None:intergenic 30.0%
GATAATATCTTTGTCAGCTT+TGG - chr8_1:78834647-78834666 None:intergenic 30.0%
ATATTGCACAAAAAGGCTTA+AGG - chr8_1:78834801-78834820 None:intergenic 30.0%
GATGAGTATATTGCACAAAA+AGG - chr8_1:78834808-78834827 None:intergenic 30.0%
TATACTCATCATTCTTGCAA+AGG + chr8_1:78834818-78834837 Msa1216820:CDS 30.0%
ATACTCATCATTCTTGCAAA+GGG + chr8_1:78834819-78834838 Msa1216820:CDS 30.0%
!!! TATACTTTTGAGGTATGCTT+GGG + chr8_1:78834907-78834926 Msa1216820:intron 30.0%
! TGAAGTTTGAAATCAAGTAC+AGG + chr8_1:78835149-78835168 Msa1216820:intron 30.0%
GCAATGATTTCGATTAAATG+AGG - chr8_1:78835185-78835204 None:intergenic 30.0%
!!! TTCTTTTGACGTCACTTTTA+TGG + chr8_1:78835360-78835379 Msa1216820:CDS 30.0%
TACAAGAGGATATGTATGTA+TGG - chr8_1:78835573-78835592 None:intergenic 30.0%
TATGCCTAAAATTCTACAAG+AGG - chr8_1:78835587-78835606 None:intergenic 30.0%
! CTTTTATTGATACCAAGTAC+AGG + chr8_1:78835706-78835725 Msa1216820:intron 30.0%
AAAGGTAGGATACTAATTGA+AGG + chr8_1:78835915-78835934 Msa1216820:CDS 30.0%
!!! TCAAAGCATGAGTTTTGAAT+TGG - chr8_1:78836250-78836269 None:intergenic 30.0%
TGTTGTATCGTGTATATTGA+GGG - chr8_1:78836474-78836493 None:intergenic 30.0%
ATGTTGTATCGTGTATATTG+AGG - chr8_1:78836475-78836494 None:intergenic 30.0%
TTGTCAAATAGTTGCATGTA+TGG + chr8_1:78836565-78836584 Msa1216820:three_prime_UTR 30.0%
TTAGTATTATAGTGCACGTA+TGG - chr8_1:78836701-78836720 None:intergenic 30.0%
!! AAGTCTTAACTTTTTCTTGC+GGG + chr8_1:78836755-78836774 Msa1216820:three_prime_UTR 30.0%
! AAAAGATTGCTAATTTGCAG+AGG + chr8_1:78836840-78836859 Msa1216820:three_prime_UTR 30.0%
GAATAGTCCAAGACAAAATA+AGG - chr8_1:78836896-78836915 None:intergenic 30.0%
GGAGAATTGAAATTATGGGT+TGG - chr8_1:78832314-78832333 None:intergenic 35.0%
GGACTGGAGAATTGAAATTA+TGG - chr8_1:78832319-78832338 None:intergenic 35.0%
! ACAACAACCTTTGTTTGTGT+TGG - chr8_1:78832441-78832460 None:intergenic 35.0%
! TCACAAGGTGTTACAAAAGA+AGG - chr8_1:78832567-78832586 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr8_1:78832612-78832631 None:intergenic 35.0%
! ATAGTGTCAAGTAATGGAGT+AGG - chr8_1:78832756-78832775 None:intergenic 35.0%
! GAGAGATTTTTCATGTGGAT+TGG - chr8_1:78832786-78832805 None:intergenic 35.0%
TCAACAAAAGTCGATGTATC+TGG - chr8_1:78832890-78832909 None:intergenic 35.0%
TTTCAGTGTTTCAAGAACTG+GGG + chr8_1:78833053-78833072 Msa1216820:CDS 35.0%
! GGACATTTAGGTTCAAGTTT+AGG + chr8_1:78833075-78833094 Msa1216820:CDS 35.0%
! ACCTCAGGATAAGATTTTGT+GGG + chr8_1:78833140-78833159 Msa1216820:CDS 35.0%
! GATAAGATTTTGTGGGATGT+TGG + chr8_1:78833147-78833166 Msa1216820:CDS 35.0%
ATACCATGAGACAGACTAAT+GGG + chr8_1:78833323-78833342 Msa1216820:CDS 35.0%
! GAATATGATTCTTTTGGCAC+TGG + chr8_1:78833376-78833395 Msa1216820:CDS 35.0%
AGTTCAACTACTATTTCAGC+TGG + chr8_1:78833403-78833422 Msa1216820:CDS 35.0%
ACGTCTTCAAAATGAAGTGT+CGG - chr8_1:78833477-78833496 None:intergenic 35.0%
GGCAATTGTATTGAACCAAT+AGG + chr8_1:78833751-78833770 Msa1216820:intron 35.0%
AATGATGTAGCTGCTGTTAT+TGG + chr8_1:78833808-78833827 Msa1216820:CDS 35.0%
TATGAAGCTATGAACAATGC+TGG + chr8_1:78833859-78833878 Msa1216820:CDS 35.0%
AAGAAGAAGCTTCAAATGGA+TGG - chr8_1:78834083-78834102 None:intergenic 35.0%
TGTCAAGAAGAAGCTTCAAA+TGG - chr8_1:78834087-78834106 None:intergenic 35.0%
TAGGGAGTAACAAAACGAAT+TGG + chr8_1:78834121-78834140 Msa1216820:intron 35.0%
!! TCAACACTTTTTGAAGAGCT+TGG + chr8_1:78834211-78834230 Msa1216820:CDS 35.0%
TCTATGTTATGACCATCAAC+AGG - chr8_1:78834253-78834272 None:intergenic 35.0%
GTGATAACATGGATCAATAC+AGG - chr8_1:78834325-78834344 None:intergenic 35.0%
ATCCATGTTATCACCGAAAA+AGG + chr8_1:78834331-78834350 Msa1216820:CDS 35.0%
ATTACCATGATACTTGTCAG+CGG - chr8_1:78834383-78834402 None:intergenic 35.0%
TGGAAAGCAATTCAAAGCAA+CGG + chr8_1:78834570-78834589 Msa1216820:CDS 35.0%
TTACACAACATACTTTGCAG+AGG + chr8_1:78834606-78834625 Msa1216820:CDS 35.0%
! TTGTTATTCTACCTGGTCAT+AGG - chr8_1:78834845-78834864 None:intergenic 35.0%
! AGAGAAGTTGTTATTCTACC+TGG - chr8_1:78834852-78834871 None:intergenic 35.0%
!!! CTATACTTTTGAGGTATGCT+TGG + chr8_1:78834906-78834925 Msa1216820:intron 35.0%
!! TTTTGAGGGCTAAGTCTATT+AGG + chr8_1:78834938-78834957 Msa1216820:intron 35.0%
TCAAAAGAACCACAATGTGT+AGG - chr8_1:78835349-78835368 None:intergenic 35.0%
GTCCTATGAGTTATGACAAA+TGG + chr8_1:78835856-78835875 Msa1216820:intron 35.0%
AGCCATTTGTCATAACTCAT+AGG - chr8_1:78835861-78835880 None:intergenic 35.0%
TTTAACAGATTGGGAAAGGT+AGG + chr8_1:78835901-78835920 Msa1216820:intron 35.0%
TCCAATTGATCCTTCTTCTA+CGG - chr8_1:78836111-78836130 None:intergenic 35.0%
TCCATCTAAAAGACCATCAA+GGG - chr8_1:78836165-78836184 None:intergenic 35.0%
TTCCATCTAAAAGACCATCA+AGG - chr8_1:78836166-78836185 None:intergenic 35.0%
TTTACATGACAACTATGCAG+TGG + chr8_1:78836270-78836289 Msa1216820:intron 35.0%
GTGATCCATGGTCAATATAT+CGG - chr8_1:78836316-78836335 None:intergenic 35.0%
GTTGTATCGTGTATATTGAG+GGG - chr8_1:78836473-78836492 None:intergenic 35.0%
!! GCAAAATTATGGTGTCATTG+AGG - chr8_1:78836610-78836629 None:intergenic 35.0%
TCGGAACTTCAGCAAAATTA+TGG - chr8_1:78836621-78836640 None:intergenic 35.0%
CGGTTTAGATAACAGAAATG+CGG - chr8_1:78836794-78836813 None:intergenic 35.0%
AAGCGATACCGTTCAAATTT+CGG - chr8_1:78836814-78836833 None:intergenic 35.0%
ATTGGTTAAGAAGGAGACGT+GGG - chr8_1:78832358-78832377 None:intergenic 40.0%
! TATTGGTTAAGAAGGAGACG+TGG - chr8_1:78832359-78832378 None:intergenic 40.0%
!! GGAAGAAGAAGTGTTCTTCT+GGG - chr8_1:78832591-78832610 None:intergenic 40.0%
!! AGGAAGAAGAAGTGTTCTTC+TGG - chr8_1:78832592-78832611 None:intergenic 40.0%
TTCTTCTTCTCACCCTCAAT+GGG + chr8_1:78832623-78832642 Msa1216820:CDS 40.0%
AGAAATGAAGACCCCATTGA+GGG - chr8_1:78832638-78832657 None:intergenic 40.0%
AAGAAATGAAGACCCCATTG+AGG - chr8_1:78832639-78832658 None:intergenic 40.0%
! TCATGCTTCACTTTCTGAGA+TGG + chr8_1:78832707-78832726 Msa1216820:CDS 40.0%
!! CATGCTTCACTTTCTGAGAT+GGG + chr8_1:78832708-78832727 Msa1216820:CDS 40.0%
! TGGTGGAGAGATTTTTCATG+TGG - chr8_1:78832791-78832810 None:intergenic 40.0%
CATGAAAAATCTCTCCACCA+AGG + chr8_1:78832791-78832810 Msa1216820:CDS 40.0%
GTCTCTTATATATGAACCGG+AGG - chr8_1:78832832-78832851 None:intergenic 40.0%
TTCAGTGTTTCAAGAACTGG+GGG + chr8_1:78833054-78833073 Msa1216820:CDS 40.0%
! CACCTCAGGATAAGATTTTG+TGG + chr8_1:78833139-78833158 Msa1216820:CDS 40.0%
TCCCACAAAATCTTATCCTG+AGG - chr8_1:78833144-78833163 None:intergenic 40.0%
CATACCATGAGACAGACTAA+TGG + chr8_1:78833322-78833341 Msa1216820:CDS 40.0%
ACTACTATTTCAGCTGGACT+TGG + chr8_1:78833409-78833428 Msa1216820:CDS 40.0%
AACCAATAGGAATGGCTGTT+GGG + chr8_1:78833764-78833783 Msa1216820:intron 40.0%
TTACCAACTGCTACTCTTGA+TGG + chr8_1:78833934-78833953 Msa1216820:CDS 40.0%
! CTTTGAGTAGTGCTCTAAGT+AGG + chr8_1:78833977-78833996 Msa1216820:CDS 40.0%
ACCTCTTAGAGAATTGAGAG+AGG + chr8_1:78834014-78834033 Msa1216820:CDS 40.0%
ACCTCTCTCAATTCTCTAAG+AGG - chr8_1:78834018-78834037 None:intergenic 40.0%
AGAATTGAGAGAGGTTGCAA+AGG + chr8_1:78834023-78834042 Msa1216820:CDS 40.0%
GGAGTAACAAAACGAATTGG+AGG + chr8_1:78834124-78834143 Msa1216820:CDS 40.0%
GAGCTTGGACTCTACTATAT+CGG + chr8_1:78834226-78834245 Msa1216820:CDS 40.0%
TACTATATCGGTCCTGTTGA+TGG + chr8_1:78834238-78834257 Msa1216820:CDS 40.0%
AACATGGATCAATACAGGAC+CGG - chr8_1:78834320-78834339 None:intergenic 40.0%
GCTGACAAGTATCATGGTAA+TGG + chr8_1:78834382-78834401 Msa1216820:intron 40.0%
TTCCTCACAGATATGTGAGT+TGG + chr8_1:78834509-78834528 Msa1216820:intron 40.0%
AACCAACTCACATATCTGTG+AGG - chr8_1:78834514-78834533 None:intergenic 40.0%
!!! GTGAGTTGGTTTGATTTTCC+AGG + chr8_1:78834523-78834542 Msa1216820:intron 40.0%
TTGAATTGCTTTCCAGTTGG+TGG - chr8_1:78834565-78834584 None:intergenic 40.0%
! GCTTTGAATTGCTTTCCAGT+TGG - chr8_1:78834568-78834587 None:intergenic 40.0%
! CAAAGCATCTTGTTGGGAAT+CGG - chr8_1:78834720-78834739 None:intergenic 40.0%
TAGACCTGCAGCAAATGTAA+CGG - chr8_1:78834767-78834786 None:intergenic 40.0%
GAATTTCATGTCCATACCAC+AGG + chr8_1:78835246-78835265 Msa1216820:intron 40.0%
GCTTCCTGTAAGATTTGCAA+TGG + chr8_1:78835294-78835313 Msa1216820:CDS 40.0%
CTGTCCATTGCAAATCTTAC+AGG - chr8_1:78835301-78835320 None:intergenic 40.0%
AAGAGGAATGCCTTTGTACT+CGG - chr8_1:78835527-78835546 None:intergenic 40.0%
!!! GGATTTTTAGTCCCTGTACT+TGG - chr8_1:78835721-78835740 None:intergenic 40.0%
GCTTCCTTAGTTGAACAACA+TGG + chr8_1:78835993-78836012 Msa1216820:CDS 40.0%
CAAGCCATGTTGTTCAACTA+AGG - chr8_1:78836000-78836019 None:intergenic 40.0%
ACCGTAGAAGAAGGATCAAT+TGG + chr8_1:78836107-78836126 Msa1216820:CDS 40.0%
GTAGAAGAAGGATCAATTGG+AGG + chr8_1:78836110-78836129 Msa1216820:CDS 40.0%
GAAGGATCAATTGGAGGATT+TGG + chr8_1:78836116-78836135 Msa1216820:CDS 40.0%
TTCTCATGTTGCTCAGTTCA+TGG + chr8_1:78836139-78836158 Msa1216820:CDS 40.0%
TCCATGGTCAATATATCGGT+CGG - chr8_1:78836312-78836331 None:intergenic 40.0%
TAAGACCAGCCATTGACAAT+TGG - chr8_1:78836346-78836365 None:intergenic 40.0%
GCAACAGTGTTCAACATACT+TGG + chr8_1:78836383-78836402 Msa1216820:CDS 40.0%
CATACTTGGACAAACAAGAG+AGG + chr8_1:78836397-78836416 Msa1216820:CDS 40.0%
!! ACAAACAAGAGAGGCATTAG+AGG + chr8_1:78836406-78836425 Msa1216820:CDS 40.0%
TGATTGTGAACGAAGTGGAC+TGG - chr8_1:78832335-78832354 None:intergenic 45.0%
!! AGTGTTCTTCTGGGATCACA+AGG - chr8_1:78832582-78832601 None:intergenic 45.0%
CTTCTTCTTCTCACCCTCAA+TGG + chr8_1:78832622-78832641 Msa1216820:CDS 45.0%
TCTTCTTCTCACCCTCAATG+GGG + chr8_1:78832624-78832643 Msa1216820:CDS 45.0%
! GTGTCAAGTAATGGAGTAGG+AGG - chr8_1:78832753-78832772 None:intergenic 45.0%
TGAGTGAAGTAGTACCTTGG+TGG - chr8_1:78832808-78832827 None:intergenic 45.0%
GGATGAGTGAAGTAGTACCT+TGG - chr8_1:78832811-78832830 None:intergenic 45.0%
GTACTACTTCACTCATCCTC+CGG + chr8_1:78832813-78832832 Msa1216820:intron 45.0%
TCAAGAACTGGGGGACATTT+AGG + chr8_1:78833063-78833082 Msa1216820:CDS 45.0%
! CAACCCATTAGTCTGTCTCA+TGG - chr8_1:78833329-78833348 None:intergenic 45.0%
!! AGACAGACTAATGGGTTGTC+TGG + chr8_1:78833331-78833350 Msa1216820:CDS 45.0%
GAACCAATAGGAATGGCTGT+TGG + chr8_1:78833763-78833782 Msa1216820:intron 45.0%
GTAGCTGCTGTTATTGGTGA+TGG + chr8_1:78833814-78833833 Msa1216820:CDS 45.0%
AAAGCTCCTACAGGTGGTAT+GGG - chr8_1:78833961-78833980 None:intergenic 45.0%
TGGAGGTCCTATGCATGAAT+TGG + chr8_1:78834141-78834160 Msa1216820:CDS 45.0%
TTCGCAGCCAATTCATGCAT+AGG - chr8_1:78834151-78834170 None:intergenic 45.0%
AAAGTTGACGAGTATGCTCG+TGG + chr8_1:78834169-78834188 Msa1216820:CDS 45.0%
TATGCTCGTGGTATGATCAG+TGG + chr8_1:78834181-78834200 Msa1216820:CDS 45.0%
!!! GGCCTTTTTCGGTGATAACA+TGG - chr8_1:78834336-78834355 None:intergenic 45.0%
! GGATCAAACTTGGTAACTCC+TGG - chr8_1:78834544-78834563 None:intergenic 45.0%
ACCAAGTTTGATCCACCAAC+TGG + chr8_1:78834550-78834569 Msa1216820:CDS 45.0%
!! TCCAGTTGGTGGATCAAACT+TGG - chr8_1:78834554-78834573 None:intergenic 45.0%
TATCGCAATACATGCTGCGA+TGG + chr8_1:78834663-78834682 Msa1216820:CDS 45.0%
ATCGCAATACATGCTGCGAT+GGG + chr8_1:78834664-78834683 Msa1216820:CDS 45.0%
! CCACGTCAAAGCATCTTGTT+GGG - chr8_1:78834726-78834745 None:intergenic 45.0%
CCAACAAGATGCTTTGACGT+GGG + chr8_1:78834724-78834743 Msa1216820:CDS 45.0%
CAACAAGATGCTTTGACGTG+GGG + chr8_1:78834725-78834744 Msa1216820:CDS 45.0%
!!! ACTTTTGAGGTATGCTTGGG+TGG + chr8_1:78834910-78834929 Msa1216820:intron 45.0%
TTTCATGTCCATACCACAGG+TGG + chr8_1:78835249-78835268 Msa1216820:intron 45.0%
ATCATGTACCACCTGTGGTA+TGG - chr8_1:78835260-78835279 None:intergenic 45.0%
AGATTTGCAATGGACAGAGC+TGG + chr8_1:78835304-78835323 Msa1216820:CDS 45.0%
!! ATGGACAGAGCTGGATTAGT+TGG + chr8_1:78835313-78835332 Msa1216820:CDS 45.0%
!! GCTGGATTAGTTGGATCAGA+TGG + chr8_1:78835322-78835341 Msa1216820:CDS 45.0%
TCAGATGGTCCTACACATTG+TGG + chr8_1:78835337-78835356 Msa1216820:CDS 45.0%
CAAAGCTCTGCTTCATCAGA+AGG - chr8_1:78835415-78835434 None:intergenic 45.0%
! TGAAGCAGAGCTTTGTCACA+TGG + chr8_1:78835420-78835439 Msa1216820:CDS 45.0%
!! GTACAAAGGCATTCCTCTTG+AGG + chr8_1:78835528-78835547 Msa1216820:CDS 45.0%
AGGAGAAAGAGTAGCCCTAT+TGG + chr8_1:78835935-78835954 Msa1216820:CDS 45.0%
GGAGAAAGAGTAGCCCTATT+GGG + chr8_1:78835936-78835955 Msa1216820:CDS 45.0%
CGAATCAAGGATCGATCCAA+TGG - chr8_1:78836056-78836075 None:intergenic 45.0%
! TTTTGCCAGACTGCGAATCA+AGG - chr8_1:78836069-78836088 None:intergenic 45.0%
CAGTCTGGCAAAATCACATG+AGG + chr8_1:78836076-78836095 Msa1216820:CDS 45.0%
GTTCTGATCACCGTAGAAGA+AGG + chr8_1:78836098-78836117 Msa1216820:CDS 45.0%
!! GCCCTTGATGGTCTTTTAGA+TGG + chr8_1:78836161-78836180 Msa1216820:CDS 45.0%
ACATGACAACTATGCAGTGG+AGG + chr8_1:78836273-78836292 Msa1216820:intron 45.0%
CCATGGTCAATATATCGGTC+GGG - chr8_1:78836311-78836330 None:intergenic 45.0%
ACCTGCTGACCAATTGTCAA+TGG + chr8_1:78836334-78836353 Msa1216820:CDS 45.0%
ACTGTTGCTGCTATGTGAGA+GGG - chr8_1:78836371-78836390 None:intergenic 45.0%
!! TATGATTATTATAATATTAT+TGG - chr8_1:78832376-78832395 None:intergenic 5.0%
GTGGGTGATTGTGAACGAAG+TGG - chr8_1:78832340-78832359 None:intergenic 50.0%
ACAGGAGCTGAAACAGCTTG+CGG + chr8_1:78833008-78833027 Msa1216820:intron 50.0%
TTTGTGGGATGTTGGTCACC+AGG + chr8_1:78833155-78833174 Msa1216820:CDS 50.0%
CAACATAACACCAACCCACC+TGG - chr8_1:78833176-78833195 None:intergenic 50.0%
GTCAGTCTCAGTTTCGTGTC+TGG + chr8_1:78833581-78833600 Msa1216820:intron 50.0%
CTCCCAACAGCCATTCCTAT+TGG - chr8_1:78833769-78833788 None:intergenic 50.0%
GCTGTTGGGAGAGATCTGAA+GGG + chr8_1:78833778-78833797 Msa1216820:CDS 50.0%
!! TGGTGATGGTGCTATGACAG+CGG + chr8_1:78833828-78833847 Msa1216820:CDS 50.0%
GGTCCATCAAGAGTAGCAGT+TGG - chr8_1:78833940-78833959 None:intergenic 50.0%
CAAAGCTCCTACAGGTGGTA+TGG - chr8_1:78833962-78833981 None:intergenic 50.0%
CTACTCAAAGCTCCTACAGG+TGG - chr8_1:78833967-78833986 None:intergenic 50.0%
GCACTACTCAAAGCTCCTAC+AGG - chr8_1:78833970-78833989 None:intergenic 50.0%
CGTGGTATGATCAGTGGTAC+TGG + chr8_1:78834187-78834206 Msa1216820:CDS 50.0%
GTTATCACCGAAAAAGGCCG+CGG + chr8_1:78834337-78834356 Msa1216820:CDS 50.0%
! TGGATATCCGCGGCCTTTTT+CGG - chr8_1:78834347-78834366 None:intergenic 50.0%
CAAGCCGCTGACAAGTATCA+TGG + chr8_1:78834376-78834395 Msa1216820:CDS 50.0%
ATCTTGTTGGGAATCGGCGA+TGG - chr8_1:78834714-78834733 None:intergenic 50.0%
CCCAACAAGATGCTTTGACG+TGG + chr8_1:78834723-78834742 Msa1216820:CDS 50.0%
! CCCACGTCAAAGCATCTTGT+TGG - chr8_1:78834727-78834746 None:intergenic 50.0%
! CATGCCGTTACATTTGCTGC+AGG + chr8_1:78834760-78834779 Msa1216820:CDS 50.0%
! TTTGAGGTATGCTTGGGTGG+AGG + chr8_1:78834913-78834932 Msa1216820:intron 50.0%
TTGAGGTATGCTTGGGTGGA+GGG + chr8_1:78834914-78834933 Msa1216820:intron 50.0%
! CTTGGGTGGAGGGTTTTTGA+GGG + chr8_1:78834924-78834943 Msa1216820:intron 50.0%
ACCACAGGTGGTACATGATG+TGG + chr8_1:78835261-78835280 Msa1216820:intron 50.0%
TCCACATCATGTACCACCTG+TGG - chr8_1:78835265-78835284 None:intergenic 50.0%
!! CTCGGGTATCGGAAACAACT+CGG - chr8_1:78835475-78835494 None:intergenic 50.0%
! GAGTTGTTTCCGATACCCGA+GGG + chr8_1:78835474-78835493 Msa1216820:CDS 50.0%
! AGTTGTTTCCGATACCCGAG+GGG + chr8_1:78835475-78835494 Msa1216820:CDS 50.0%
! ACACCAATGCCATTTCCCCT+CGG - chr8_1:78835493-78835512 None:intergenic 50.0%
GAACTTCCAGCCGAGTACAA+AGG + chr8_1:78835514-78835533 Msa1216820:CDS 50.0%
AGAGTAGCCCTATTGGGCTA+CGG + chr8_1:78835942-78835961 Msa1216820:CDS 50.0%
GTCAGCCGTTCAGAACTGTT+TGG + chr8_1:78835965-78835984 Msa1216820:CDS 50.0%
!! CGCAGCCAAACAGTTCTGAA+CGG - chr8_1:78835973-78835992 None:intergenic 50.0%
CGTTCAGAACTGTTTGGCTG+CGG + chr8_1:78835971-78835990 Msa1216820:CDS 50.0%
! TGGCTTGCAGAAACGTGCAT+CGG - chr8_1:78836036-78836055 None:intergenic 50.0%
TGCACGTTTCTGCAAGCCAT+TGG + chr8_1:78836037-78836056 Msa1216820:CDS 50.0%
! TCGATCCTTGATTCGCAGTC+TGG + chr8_1:78836061-78836080 Msa1216820:CDS 50.0%
CCCGACCGATATATTGACCA+TGG + chr8_1:78836308-78836327 Msa1216820:CDS 50.0%
ATTGGTCAGCAGGTGATCCA+TGG - chr8_1:78836328-78836347 None:intergenic 50.0%
GCCATTGACAATTGGTCAGC+AGG - chr8_1:78836338-78836357 None:intergenic 50.0%
GCTGACCAATTGTCAATGGC+TGG + chr8_1:78836338-78836357 Msa1216820:CDS 50.0%
CACTGTTGCTGCTATGTGAG+AGG - chr8_1:78836372-78836391 None:intergenic 50.0%
TGGGATGTTGGTCACCAGGT+GGG + chr8_1:78833159-78833178 Msa1216820:intron 55.0%
ATGTTGGTCACCAGGTGGGT+TGG + chr8_1:78833163-78833182 Msa1216820:intron 55.0%
GGCTGTTGGGAGAGATCTGA+AGG + chr8_1:78833777-78833796 Msa1216820:CDS 55.0%
!! GGTGATGGTGCTATGACAGC+GGG + chr8_1:78833829-78833848 Msa1216820:CDS 55.0%
GATGGACCCATACCACCTGT+AGG + chr8_1:78833952-78833971 Msa1216820:CDS 55.0%
GCTCTGCGTATGGATATCCG+CGG - chr8_1:78834357-78834376 None:intergenic 55.0%
GCAATACATGCTGCGATGGG+AGG + chr8_1:78834667-78834686 Msa1216820:CDS 55.0%
ATACATGCTGCGATGGGAGG+TGG + chr8_1:78834670-78834689 Msa1216820:CDS 55.0%
! GCTGCAGGTCTAGCTTGTGA+AGG + chr8_1:78834775-78834794 Msa1216820:CDS 55.0%
CTTGCAAAGGGCCTATGACC+AGG + chr8_1:78834831-78834850 Msa1216820:CDS 55.0%
! GCTTGGGTGGAGGGTTTTTG+AGG + chr8_1:78834923-78834942 Msa1216820:intron 55.0%
TATGGCATGCCTCCCCAACA+TGG + chr8_1:78835378-78835397 Msa1216820:CDS 55.0%
GAGCCATCACCACCATGTTG+GGG - chr8_1:78835393-78835412 None:intergenic 55.0%
GGAGCCATCACCACCATGTT+GGG - chr8_1:78835394-78835413 None:intergenic 55.0%
AGGAGCCATCACCACCATGT+TGG - chr8_1:78835395-78835414 None:intergenic 55.0%
ACAACTCGGTCGATCGTCGA+TGG - chr8_1:78835461-78835480 None:intergenic 55.0%
! CGAGTTGTTTCCGATACCCG+AGG + chr8_1:78835473-78835492 Msa1216820:CDS 55.0%
TTCCGATACCCGAGGGGAAA+TGG + chr8_1:78835481-78835500 Msa1216820:CDS 55.0%
! TGCCATTTCCCCTCGGGTAT+CGG - chr8_1:78835486-78835505 None:intergenic 55.0%
TACCCGAGGGGAAATGGCAT+TGG + chr8_1:78835487-78835506 Msa1216820:CDS 55.0%
! CACCAATGCCATTTCCCCTC+GGG - chr8_1:78835492-78835511 None:intergenic 55.0%
GGAATGCCTTTGTACTCGGC+TGG - chr8_1:78835523-78835542 None:intergenic 55.0%
GAGTAGCCCTATTGGGCTAC+GGG + chr8_1:78835943-78835962 Msa1216820:CDS 55.0%
GCTCAGTTCATGGCCCTTGA+TGG + chr8_1:78836149-78836168 Msa1216820:CDS 55.0%
GACAACTATGCAGTGGAGGC+CGG + chr8_1:78836277-78836296 Msa1216820:intron 55.0%
TATCGGTCGGGAAGAACCAC+CGG - chr8_1:78836299-78836318 None:intergenic 55.0%
GTGGGATGTTGGTCACCAGG+TGG + chr8_1:78833158-78833177 Msa1216820:intron 60.0%
! TCAGCGGCTTGCTCTGCGTA+TGG - chr8_1:78834367-78834386 None:intergenic 60.0%
CCATCACCACCATGTTGGGG+AGG - chr8_1:78835390-78835409 None:intergenic 60.0%
! CCTCCCCAACATGGTGGTGA+TGG + chr8_1:78835387-78835406 Msa1216820:CDS 60.0%
ATCGTCGATGGCTGCTGCAG+TGG - chr8_1:78835449-78835468 None:intergenic 60.0%
GGCTGACCCGTAGCCCAATA+GGG - chr8_1:78835952-78835971 None:intergenic 60.0%
AACTATGCAGTGGAGGCCGG+TGG + chr8_1:78836280-78836299 Msa1216820:intron 60.0%
GCTGCGATGGGAGGTGGAAC+TGG + chr8_1:78834676-78834695 Msa1216820:CDS 65.0%
GGCATGCCTCCCCAACATGG+TGG + chr8_1:78835381-78835400 Msa1216820:CDS 65.0%
CGGCTGACCCGTAGCCCAAT+AGG - chr8_1:78835953-78835972 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 78832278 78836923 78832278 ID=Msa1216820;Name=Msa1216820
chr8_1 mRNA 78832278 78836923 78832278 ID=Msa1216820-mRNA-1;Parent=Msa1216820;Name=Msa1216820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=262|1|1|1|1|1|9|484|719
chr8_1 exon 78832278 78832812 78832278 ID=Msa1216820-mRNA-1:exon:27305;Parent=Msa1216820-mRNA-1
chr8_1 exon 78833012 78833176 78833012 ID=Msa1216820-mRNA-1:exon:27306;Parent=Msa1216820-mRNA-1
chr8_1 exon 78833280 78833430 78833280 ID=Msa1216820-mRNA-1:exon:27307;Parent=Msa1216820-mRNA-1
chr8_1 exon 78833773 78834044 78833773 ID=Msa1216820-mRNA-1:exon:27308;Parent=Msa1216820-mRNA-1
chr8_1 exon 78834124 78834397 78834124 ID=Msa1216820-mRNA-1:exon:27309;Parent=Msa1216820-mRNA-1
chr8_1 exon 78834545 78834852 78834545 ID=Msa1216820-mRNA-1:exon:27310;Parent=Msa1216820-mRNA-1
chr8_1 exon 78835268 78835549 78835268 ID=Msa1216820-mRNA-1:exon:27311;Parent=Msa1216820-mRNA-1
chr8_1 exon 78835909 78836193 78835909 ID=Msa1216820-mRNA-1:exon:27312;Parent=Msa1216820-mRNA-1
chr8_1 exon 78836290 78836923 78836290 ID=Msa1216820-mRNA-1:exon:27313;Parent=Msa1216820-mRNA-1
chr8_1 five_prime_UTR 78832278 78832539 78832278 ID=Msa1216820-mRNA-1:five_prime_utr;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78832540 78832812 78832540 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78833012 78833176 78833012 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78833280 78833430 78833280 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78833773 78834044 78833773 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78834124 78834397 78834124 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78834545 78834852 78834545 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78835268 78835549 78835268 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78835909 78836193 78835909 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 CDS 78836290 78836439 78836290 ID=Msa1216820-mRNA-1:cds;Parent=Msa1216820-mRNA-1
chr8_1 three_prime_UTR 78836440 78836923 78836440 ID=Msa1216820-mRNA-1:three_prime_utr;Parent=Msa1216820-mRNA-1
Gene Sequence

>Msa1216820

ATGGATCTCTGTTCATTAGCATGTCCTTCTTTTGTAACACCTTGTGATCCCAGAAGAACACTTCTTCTTCCTTCTTCTTCTTCTTCTTCTTCTCACCCTCAATGGGGTCTTCATTTCTTCGCTCACTCTCAACAACACAACAAACTCAAGAAAAAGATTGGTGTTGTTCATGCTTCACTTTCTGAGATGGGAGAATATTATTCTCAAAGACCTCCTACTCCATTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTCTCCACCAAGGAGCTGAAACAGCTTGCGGATGAACTACGTTCTGATGTTATTTTCAGTGTTTCAAGAACTGGGGGACATTTAGGTTCAAGTTTAGGTGTTGTTGAACTTACTATTGCTCTTCACTATGTTTTTAATACACCTCAGGATAAGATTTTGTGGGATGTTGGTCACCAGTCATATCCTCATAAAATACTTACTGGTAGAAGGGATAAGATGCATACCATGAGACAGACTAATGGGTTGTCTGGATTTACAAAACGTTCTGAGAGTGAATATGATTCTTTTGGCACTGGTCATAGTTCAACTACTATTTCAGCTGGACTTGGAATGGCTGTTGGGAGAGATCTGAAGGGAAGAAAGAATGATGTAGCTGCTGTTATTGGTGATGGTGCTATGACAGCGGGTCAAGCTTATGAAGCTATGAACAATGCTGGATATCTTGATTCTGATATGATTGTAATTTTGAATGACAACAAACAAGTTTCTTTACCAACTGCTACTCTTGATGGACCCATACCACCTGTAGGAGCTTTGAGTAGTGCTCTAAGTAGGTTACAATCAAACAAACCTCTTAGAGAATTGAGAGAGGTTGCAAAGGGAGTAACAAAACGAATTGGAGGTCCTATGCATGAATTGGCTGCGAAAGTTGACGAGTATGCTCGTGGTATGATCAGTGGTACTGGATCAACACTTTTTGAAGAGCTTGGACTCTACTATATCGGTCCTGTTGATGGTCATAACATAGATGATCTAGTTGCCATTCTCAAAGAAGTCAAAACTACTAATAGTACCGGTCCTGTATTGATCCATGTTATCACCGAAAAAGGCCGCGGATATCCATACGCAGAGCAAGCCGCTGACAAGTATCATGGAGTTACCAAGTTTGATCCACCAACTGGAAAGCAATTCAAAGCAACGGCTAAAACGCAGTCTTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCAAAGCTGACAAAGATATTATCGCAATACATGCTGCGATGGGAGGTGGAACTGGCATGAATCTCTTCCATCGCCGATTCCCAACAAGATGCTTTGACGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCAGGTCTAGCTTGTGAAGGCCTTAAGCCTTTTTGTGCAATATACTCATCATTCTTGCAAAGGGCCTATGACCAGGTGGTACATGATGTGGATTTGCAAAAGCTTCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGATCAGATGGTCCTACACATTGTGGTTCTTTTGACGTCACTTTTATGGCATGCCTCCCCAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTGTCACATGGTTGCCACTGCAGCAGCCATCGACGATCGACCGAGTTGTTTCCGATACCCGAGGGGAAATGGCATTGGTGTTGAACTTCCAGCCGAGTACAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTAATTGAAGGAGAAAGAGTAGCCCTATTGGGCTACGGGTCAGCCGTTCAGAACTGTTTGGCTGCGGCTTCCTTAGTTGAACAACATGGCTTGCGCTTAACTGTTGCCGATGCACGTTTCTGCAAGCCATTGGATCGATCCTTGATTCGCAGTCTGGCAAAATCACATGAGGTTCTGATCACCGTAGAAGAAGGATCAATTGGAGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCCTTGATGGTCTTTTAGATGGAAATTTGAAGTGGAGGCCGGTGGTTCTTCCCGACCGATATATTGACCATGGATCACCTGCTGACCAATTGTCAATGGCTGGTCTTACACCCTCTCACATAGCAGCAACAGTGTTCAACATACTTGGACAAACAAGAGAGGCATTAGAGGTCATGTCATAA

Protein sequence

>Msa1216820

MDLCSLACPSFVTPCDPRRTLLLPSSSSSSSHPQWGLHFFAHSQQHNKLKKKIGVVHASLSEMGEYYSQRPPTPLLDTINYPIHMKNLSTKELKQLADELRSDVIFSVSRTGGHLGSSLGVVELTIALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLKGRKNDVAAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNKPLRELREVAKGVTKRIGGPMHELAAKVDEYARGMISGTGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKTTNSTGPVLIHVITEKGRGYPYAEQAADKYHGVTKFDPPTGKQFKATAKTQSYTTYFAEALIAEAKADKDIIAIHAAMGGGTGMNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDRAGLVGSDGPTHCGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVELPAEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVEQHGLRLTVADARFCKPLDRSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPADQLSMAGLTPSHIAATVFNILGQTREALEVMS*