AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217020 MtrunA17_Chr4g0066611 98.047 717 11 1 1 714 1 717 0.0 1452
Msa1217020 MtrunA17_Chr2g0286641 80.830 699 130 1 16 714 21 715 0.0 1161
Msa1217020 MtrunA17_Chr8g0367181 68.085 705 210 2 20 710 5 708 0.0 1011
Msa1217020 MtrunA17_Chr8g0367201 67.614 704 215 1 20 710 5 708 0.0 1009
Msa1217020 MtrunA17_Chr3g0138171 59.858 705 272 6 11 713 11 706 0.0 830
Msa1217020 MtrunA17_Chr7g0214101 25.091 275 186 7 384 641 19 290 5.67e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217020 AT4G15560.1 86.289 671 92 0 40 710 46 716 0.0 1214
Msa1217020 AT3G21500.3 74.507 710 133 4 1 710 13 674 0.0 1073
Msa1217020 AT3G21500.2 74.586 665 121 4 1 665 13 629 0.0 1004
Msa1217020 AT3G21500.1 74.436 665 121 5 1 665 13 628 0.0 998
Msa1217020 AT5G11380.1 56.515 683 270 8 34 714 43 700 0.0 763
Msa1217020 AT5G11380.3 53.114 546 229 8 34 577 43 563 0.0 562
Msa1217020 AT5G11380.2 54.269 527 215 7 34 558 43 545 0.0 558
Msa1217020 AT5G11380.4 54.369 515 209 7 34 546 43 533 0.0 543
Msa1217020 AT5G50850.1 25.088 283 192 7 376 641 19 298 9.93e-12 67.8

Find 197 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTATTATAATATTAT+TGG 0.135713 8_1:-79199757 None:intergenic
GGACTGGAGAATTGAAATTA+TGG 0.234238 8_1:-79199700 None:intergenic
TCGGAACTTCAGCAAAATTA+TGG 0.235014 8_1:-79204022 None:intergenic
GAAGGATCAATTGGAGGATT+TGG 0.241782 8_1:+79203520 Msa1217020:CDS
AAGCGATACCGTTCAAATTT+CGG 0.245290 8_1:-79204215 None:intergenic
AATGATGTAGTTGCTGTTAT+TGG 0.259454 8_1:+79201212 Msa1217020:CDS
TTCTCATGTTGCTCAGTTCA+TGG 0.260981 8_1:+79203543 Msa1217020:CDS
AGGAAGAAGAAGTGTTCTTC+TGG 0.261298 8_1:-79199984 None:intergenic
GATCCATAACAAACAGAAAA+TGG 0.262473 8_1:-79199919 None:intergenic
ATCCATGTTATCACCGAAAA+AGG 0.271169 8_1:+79201735 Msa1217020:CDS
TTACCAACTGCTACTCTTGA+TGG 0.271724 8_1:+79201338 Msa1217020:CDS
ATAAAATACTTACTGGTAGA+AGG 0.289805 8_1:+79200688 Msa1217020:CDS
GAGAGTGAATATGATTCTTT+TGG 0.294675 8_1:+79200768 Msa1217020:CDS
TTCCTTCTTCTCACTCTCAA+TGG 0.294880 8_1:+79200002 Msa1217020:CDS
CTGTCCATTGCAAATCTTAC+AGG 0.302421 8_1:-79202702 None:intergenic
CGGCTGACCCGTAGCCCAAT+AGG 0.305029 8_1:-79203354 None:intergenic
GAATAGTCCAAGACAAAATA+AGG 0.322569 8_1:-79204297 None:intergenic
GCTCAGTTCATGGCCCTTGA+TGG 0.326804 8_1:+79203553 Msa1217020:CDS
TCCTTCTTCTCACTCTCAAT+GGG 0.335787 8_1:+79200003 Msa1217020:CDS
GGACATTTAGGTTCAAGTTT+AGG 0.343066 8_1:+79200470 Msa1217020:CDS
GATAATATCTTTGTCAGCTT+TGG 0.345890 8_1:-79202048 None:intergenic
TTGTTATTCTACCTGGTCAT+AGG 0.354959 8_1:-79202246 None:intergenic
TATAATATTATTGGTTAAGA+AGG 0.358991 8_1:-79199748 None:intergenic
AGACAGACTAATGGGTTATC+TGG 0.360543 8_1:+79200729 Msa1217020:CDS
GATGAGTATATTGCACAAAA+AGG 0.361483 8_1:-79202209 None:intergenic
TATCCTCATAAAATACTTAC+TGG 0.370362 8_1:+79200681 Msa1217020:CDS
TTATATTATATATAGTAGTA+TGG 0.374338 8_1:-79199784 None:intergenic
GAGAATTGAAATTATGGGTT+GGG 0.376880 8_1:-79199694 None:intergenic
GGAGCCATCACCACCATGTT+GGG 0.392304 8_1:-79202795 None:intergenic
TACTATATCGGTCCTGTTGA+TGG 0.393097 8_1:+79201642 Msa1217020:CDS
ATAATACTAACTAATTATAA+AGG 0.398059 8_1:+79204115 Msa1217020:three_prime_UTR
ACCTCTCTCAATTCTCTAAG+AGG 0.402113 8_1:-79201419 None:intergenic
TTCCGATACCCGAGGGGAAA+TGG 0.408784 8_1:+79202885 Msa1217020:CDS
AGGAGAAAGAGTAGCCCTAT+TGG 0.409345 8_1:+79203339 Msa1217020:CDS
TAGGGAGTAACAAAACGAAT+TGG 0.410575 8_1:+79201525 Msa1217020:intron
TCGATCCTTGATTCGCAGTC+TGG 0.418420 8_1:+79203465 Msa1217020:CDS
TCATGCTTCACTTTCTGAGA+TGG 0.428620 8_1:+79200087 Msa1217020:CDS
TTGTCAAATAGTTGCATGTA+TGG 0.431670 8_1:+79203969 Msa1217020:three_prime_UTR
CATGCTTCACTTTCTGAGAT+GGG 0.434339 8_1:+79200088 Msa1217020:CDS
ACCGTAGAAGAAGGATCAAT+TGG 0.435054 8_1:+79203511 Msa1217020:CDS
CAAAGCATCTTGTTGGGAAT+CGG 0.442480 8_1:-79202121 None:intergenic
TTTAACAGATTGGGAAAGGT+AGG 0.444040 8_1:+79203305 Msa1217020:intron
GAGCTTGGACTCTACTATAT+CGG 0.444711 8_1:+79201630 Msa1217020:CDS
GGAGAAAGAGTAGCCCTATT+GGG 0.447212 8_1:+79203340 Msa1217020:CDS
CCCACGTCAAAGCATCTTGT+TGG 0.447447 8_1:-79202128 None:intergenic
TTGAATTGCTTTCCAGTTGG+TGG 0.448517 8_1:-79201966 None:intergenic
GCTGCGATGGGAGGTGGAAC+TGG 0.448982 8_1:+79202080 Msa1217020:CDS
TCCAGTTGGTGGATCAAACT+TGG 0.452909 8_1:-79201955 None:intergenic
ATGGACAGAGCTGGATTAGT+TGG 0.453708 8_1:+79202717 Msa1217020:CDS
TGCCATTTCCCCTCGGGTAT+CGG 0.457752 8_1:-79202887 None:intergenic
ATACCATGAGACAGACTAAT+GGG 0.461341 8_1:+79200721 Msa1217020:CDS
ACCAAGTTTGATCCACCAAC+TGG 0.463045 8_1:+79201954 Msa1217020:CDS
AACCAATAGGAATGGCTGTT+GGG 0.466377 8_1:+79201168 Msa1217020:intron
GCAACAGTGTTCAACATACT+TGG 0.468649 8_1:+79203787 Msa1217020:CDS
TGCACGTTTCTGCAAGCCAT+TGG 0.468795 8_1:+79203441 Msa1217020:CDS
GCCATTGACAATTGGTCAGC+AGG 0.472373 8_1:-79203739 None:intergenic
TTAGTATTATAGTGCACGTA+TGG 0.476075 8_1:-79204102 None:intergenic
ACAACAACCTTTGTTTGTGT+TGG 0.477977 8_1:-79199827 None:intergenic
TGGAGGTCCTATGCATGAAT+TGG 0.478037 8_1:+79201545 Msa1217020:CDS
CCCCATTGAGAGTGAGAAGA+AGG 0.480744 8_1:-79200004 None:intergenic
GGAAGAAGAAGTGTTCTTCT+GGG 0.482567 8_1:-79199983 None:intergenic
GACTGGAGAATTGAAATTAT+GGG 0.483848 8_1:-79199699 None:intergenic
GTCAGCCGTTCAGAACTGTT+TGG 0.487689 8_1:+79203369 Msa1217020:CDS
ATACATGCTGCGATGGGAGG+TGG 0.489733 8_1:+79202074 Msa1217020:CDS
CACCAATGCCATTTCCCCTC+GGG 0.491891 8_1:-79202893 None:intergenic
TAAGACCAGCCATTGACAAT+TGG 0.492812 8_1:-79203747 None:intergenic
ATGTTGTATCGTGTATATTG+AGG 0.493168 8_1:-79203876 None:intergenic
AAAGCTCCTACAGGTGGTAT+AGG 0.493402 8_1:-79201362 None:intergenic
CCACGTCAAAGCATCTTGTT+GGG 0.494671 8_1:-79202127 None:intergenic
CCTCCCCAACATGGTGGTGA+TGG 0.495137 8_1:+79202791 Msa1217020:CDS
AGAATTGAGAGAGGTTGCAA+AGG 0.496003 8_1:+79201427 Msa1217020:CDS
TCAGCGGCTTGCTCTGCGTA+TGG 0.497079 8_1:-79201768 None:intergenic
ACTACTATTTCAGCTGGACT+TGG 0.499592 8_1:+79200807 Msa1217020:CDS
GTGATAACATGGATCAATAC+AGG 0.499825 8_1:-79201726 None:intergenic
TCCAATTGATCCTTCTTCTA+CGG 0.501095 8_1:-79203512 None:intergenic
TGTTGTATCGTGTATATTGA+GGG 0.501224 8_1:-79203875 None:intergenic
CATACCATGAGACAGACTAA+TGG 0.501531 8_1:+79200720 Msa1217020:CDS
ACAAACAAGAGAGGCATTAG+AGG 0.503095 8_1:+79203810 Msa1217020:CDS
CGTGGTATGATCAGTGGTAC+TGG 0.504327 8_1:+79201591 Msa1217020:CDS
GGAGAATTGAAATTATGGGT+TGG 0.505814 8_1:-79199695 None:intergenic
ATCGTCGATGGCTGCTGCAG+TGG 0.507645 8_1:-79202850 None:intergenic
CTTTGAGTAGTGCTCTAAGT+AGG 0.507922 8_1:+79201381 Msa1217020:CDS
GTAGTTGCTGTTATTGGTGA+TGG 0.508169 8_1:+79201218 Msa1217020:CDS
GTGATCCATGGTCAATATAT+CGG 0.508554 8_1:-79203717 None:intergenic
ATACTCATCATTCTTGCAAA+GGG 0.512668 8_1:+79202223 Msa1217020:CDS
GGAATGCCTTTGTACTCGGC+TGG 0.514100 8_1:-79202924 None:intergenic
TCTATGTTATGACCATCAAC+AGG 0.515677 8_1:-79201654 None:intergenic
GGCTGTTGGGAGAGATCTGA+AGG 0.516771 8_1:+79201181 Msa1217020:CDS
GCAAAATTATGGTGTCATTG+AGG 0.518092 8_1:-79204011 None:intergenic
GAGTAGCCCTATTGGGCTAC+GGG 0.519027 8_1:+79203347 Msa1217020:CDS
CAAGCCATGTTGTTCAACTA+AGG 0.519980 8_1:-79203401 None:intergenic
AAGAGGAATGCCTTTGTACT+CGG 0.521348 8_1:-79202928 None:intergenic
GACAACTATGCAGTGGAGGC+CGG 0.522608 8_1:+79203681 Msa1217020:intron
CTTGCAAAGGGCCTATGACC+AGG 0.524812 8_1:+79202235 Msa1217020:CDS
AGATTTGCAATGGACAGAGC+TGG 0.525132 8_1:+79202708 Msa1217020:CDS
AGTTCAACTACTATTTCAGC+TGG 0.526493 8_1:+79200801 Msa1217020:CDS
GGCTGACCCGTAGCCCAATA+GGG 0.528076 8_1:-79203353 None:intergenic
ACACCAATGCCATTTCCCCT+CGG 0.529099 8_1:-79202894 None:intergenic
TACCCGAGGGGAAATGGCAT+TGG 0.530322 8_1:+79202891 Msa1217020:CDS
GCTGACCAATTGTCAATGGC+TGG 0.531698 8_1:+79203742 Msa1217020:CDS
GCACTACTCAAAGCTCCTAC+AGG 0.533764 8_1:-79201371 None:intergenic
GAACCAATAGGAATGGCTGT+TGG 0.533777 8_1:+79201167 Msa1217020:intron
CAAAGCTCTGCTTCATCAGA+AGG 0.534683 8_1:-79202816 None:intergenic
ACCTGCTGACCAATTGTCAA+TGG 0.535095 8_1:+79203738 Msa1217020:CDS
TTCCATCTAAAAGACCATCA+AGG 0.536693 8_1:-79203567 None:intergenic
TTTGTGGGATGTTGGTCACC+AGG 0.538468 8_1:+79200550 Msa1217020:CDS
TATGAAGCTATGAACAATGC+TGG 0.538515 8_1:+79201263 Msa1217020:CDS
GCTTCCTGTAAGATTTGCAA+TGG 0.538600 8_1:+79202698 Msa1217020:CDS
GTCAAAACTACTAATAGTAC+CGG 0.538944 8_1:+79201702 Msa1217020:CDS
CCATGGTCAATATATCGGTC+GGG 0.539704 8_1:-79203712 None:intergenic
TAAAATACTTACTGGTAGAA+GGG 0.540493 8_1:+79200689 Msa1217020:CDS
AGGAGCCATCACCACCATGT+TGG 0.540606 8_1:-79202796 None:intergenic
TCACAAGGTGTTACAAAAGA+AGG 0.540930 8_1:-79199959 None:intergenic
AGAGTAGCCCTATTGGGCTA+CGG 0.541980 8_1:+79203346 Msa1217020:CDS
GTACAAAGGCATTCCTCTTG+AGG 0.542688 8_1:+79202932 Msa1217020:CDS
TATCGCAATACATGCTGCGA+TGG 0.543634 8_1:+79202067 Msa1217020:CDS
AAAGGTAGGATACTAATTGA+AGG 0.544500 8_1:+79203319 Msa1217020:CDS
CATGCCGTTACATTTGCTGC+AGG 0.547176 8_1:+79202164 Msa1217020:CDS
CCAACAAGATGCTTTGACGT+GGG 0.550307 8_1:+79202128 Msa1217020:CDS
CGTTCAGAACTGTTTGGCTG+CGG 0.550458 8_1:+79203375 Msa1217020:CDS
TATACTCATCATTCTTGCAA+AGG 0.554665 8_1:+79202222 Msa1217020:CDS
GGAGTAACAAAACGAATTGG+AGG 0.556176 8_1:+79201528 Msa1217020:CDS
CTCGGGTATCGGAAACAACT+CGG 0.556658 8_1:-79202876 None:intergenic
GCTGCAGGTCTAGCTTGTGA+AGG 0.558594 8_1:+79202179 Msa1217020:CDS
ATATTAACCAACACAAACAA+AGG 0.565171 8_1:+79199820 Msa1217020:five_prime_UTR
GTTCTGATCACCGTAGAAGA+AGG 0.565510 8_1:+79203502 Msa1217020:CDS
GCTGGATTAGTTGGATCAGA+TGG 0.566290 8_1:+79202726 Msa1217020:CDS
TCCATGGTCAATATATCGGT+CGG 0.567471 8_1:-79203713 None:intergenic
TCCATCTAAAAGACCATCAA+GGG 0.567878 8_1:-79203566 None:intergenic
TATGGCATGCCTCCCCAACA+TGG 0.569047 8_1:+79202782 Msa1217020:CDS
CGAATCAAGGATCGATCCAA+TGG 0.575852 8_1:-79203457 None:intergenic
TAGTTAATAGTGTCAAGTAA+TGG 0.576385 8_1:-79200139 None:intergenic
ATCTTGTTGGGAATCGGCGA+TGG 0.577057 8_1:-79202115 None:intergenic
CCCAACAAGATGCTTTGACG+TGG 0.578877 8_1:+79202127 Msa1217020:CDS
TATCGGTCGGGAAGAACCAC+CGG 0.579648 8_1:-79203700 None:intergenic
TTCAGTGTTTCAAGAACTGG+GGG 0.580278 8_1:+79200449 Msa1217020:CDS
TATCTAAACCGAAATTTGAA+CGG 0.581558 8_1:+79204207 Msa1217020:three_prime_UTR
ATTGGTCAGCAGGTGATCCA+TGG 0.582909 8_1:-79203729 None:intergenic
ATAGTGTCAAGTAATGGAGT+AGG 0.583027 8_1:-79200133 None:intergenic
GTGTCAAGTAATGGAGTAGG+AGG 0.583729 8_1:-79200130 None:intergenic
CACTGTTGCTGCTATGTGAG+AGG 0.583769 8_1:-79203773 None:intergenic
ATCGCAATACATGCTGCGAT+GGG 0.585240 8_1:+79202068 Msa1217020:CDS
GCTTTGAATTGCTTTCCAGT+TGG 0.585632 8_1:-79201969 None:intergenic
TGAGTGAAGTAGTACCTTGG+TGG 0.585939 8_1:-79200185 None:intergenic
ACCACAGGTGGTACATGATG+TGG 0.589888 8_1:+79202665 Msa1217020:intron
GTAGAAGAAGGATCAATTGG+AGG 0.595008 8_1:+79203514 Msa1217020:CDS
TGATTGTGAACGAAGTGGAC+TGG 0.596202 8_1:-79199716 None:intergenic
AACATGGATCAATACAGGAC+CGG 0.598177 8_1:-79201721 None:intergenic
GGTGATGGTGCTATGACAGC+GGG 0.598232 8_1:+79201233 Msa1217020:CDS
CAACAAGATGCTTTGACGTG+GGG 0.598949 8_1:+79202129 Msa1217020:CDS
CAAGCCGCTGACAAGTATCA+TGG 0.599890 8_1:+79201780 Msa1217020:CDS
TTCGCAGCCAATTCATGCAT+AGG 0.601604 8_1:-79201552 None:intergenic
AAAAGATTGCTAATTTGCAG+AGG 0.602055 8_1:+79204244 Msa1217020:three_prime_UTR
TAACCCATTAGTCTGTCTCA+TGG 0.604663 8_1:-79200724 None:intergenic
ACAACTCGGTCGATCGTCGA+TGG 0.606839 8_1:-79202862 None:intergenic
CGCAGCCAAACAGTTCTGAA+CGG 0.607768 8_1:-79203374 None:intergenic
CGGTTTAGATAACAGAAATG+CGG 0.610437 8_1:-79204195 None:intergenic
CCCGACCGATATATTGACCA+TGG 0.612239 8_1:+79203712 Msa1217020:CDS
GCAATACATGCTGCGATGGG+AGG 0.614477 8_1:+79202071 Msa1217020:CDS
TTACACAACATACTTTGCAG+AGG 0.619468 8_1:+79202010 Msa1217020:CDS
ATTGGTTAAGAAGGAGACGT+GGG 0.620865 8_1:-79199739 None:intergenic
GAGCCATCACCACCATGTTG+GGG 0.622407 8_1:-79202794 None:intergenic
TGGAAAGCAATTCAAAGCAA+CGG 0.628196 8_1:+79201974 Msa1217020:CDS
GAACTTCCAGCCGAGTACAA+AGG 0.631347 8_1:+79202918 Msa1217020:CDS
TGGTGATGGTGCTATGACAG+CGG 0.633316 8_1:+79201232 Msa1217020:CDS
TTTCAGTGTTTCAAGAACTG+GGG 0.633346 8_1:+79200448 Msa1217020:CDS
CCATCACCACCATGTTGGGG+AGG 0.634531 8_1:-79202791 None:intergenic
ATTATTTAACTAGATAACGC+AGG 0.635299 8_1:+79203946 Msa1217020:three_prime_UTR
GAGTTGTTTCCGATACCCGA+GGG 0.637112 8_1:+79202878 Msa1217020:CDS
AGTGTTCTTCTGGGATCACA+AGG 0.638544 8_1:-79199974 None:intergenic
TGAAGCAGAGCTTTGTCACA+TGG 0.638669 8_1:+79202824 Msa1217020:CDS
CCTTCTTCTCACTCTCAATG+GGG 0.641726 8_1:+79200004 Msa1217020:CDS
TAGACCTGCAGCAAATGTAA+CGG 0.641986 8_1:-79202168 None:intergenic
CGAGTTGTTTCCGATACCCG+AGG 0.642120 8_1:+79202877 Msa1217020:CDS
GCTTCCTTAGTTGAACAACA+TGG 0.642813 8_1:+79203397 Msa1217020:CDS
TCAGATGGTCCTACACATTG+TGG 0.645337 8_1:+79202741 Msa1217020:CDS
AACTATGCAGTGGAGGCCGG+TGG 0.646065 8_1:+79203684 Msa1217020:intron
TCCCACAAAATCTTATCCTG+AGG 0.647268 8_1:-79200536 None:intergenic
GGTCCATCAAGAGTAGCAGT+TGG 0.647333 8_1:-79201341 None:intergenic
TGGCTTGCAGAAACGTGCAT+CGG 0.647415 8_1:-79203437 None:intergenic
TATTGGTTAAGAAGGAGACG+TGG 0.647941 8_1:-79199740 None:intergenic
TCAAAAGAACCACAATGTGT+AGG 0.648738 8_1:-79202750 None:intergenic
GTTGTATCGTGTATATTGAG+GGG 0.654052 8_1:-79203874 None:intergenic
ACTGTTGCTGCTATGTGAGA+GGG 0.660707 8_1:-79203772 None:intergenic
CAGTCTGGCAAAATCACATG+AGG 0.662811 8_1:+79203480 Msa1217020:CDS
GATGGACCTATACCACCTGT+AGG 0.673324 8_1:+79201356 Msa1217020:CDS
ACAGGAGCTGAAACAGCTTG+CGG 0.674251 8_1:+79200403 Msa1217020:intron
TATGCTCGTGGTATGATCAG+TGG 0.678017 8_1:+79201585 Msa1217020:CDS
AAAGTTGACGAGTATGCTCG+TGG 0.686551 8_1:+79201573 Msa1217020:CDS
ACCTCTTAGAGAATTGAGAG+AGG 0.689978 8_1:+79201418 Msa1217020:CDS
CTACTCAAAGCTCCTACAGG+TGG 0.693731 8_1:-79201368 None:intergenic
GTGGGTGATTGTGAACGAAG+TGG 0.699805 8_1:-79199721 None:intergenic
CATACTTGGACAAACAAGAG+AGG 0.703939 8_1:+79203801 Msa1217020:CDS
ATTACCATGATACTTGTCAG+CGG 0.708984 8_1:-79201784 None:intergenic
GCTGTTGGGAGAGATCTGAA+GGG 0.712298 8_1:+79201182 Msa1217020:CDS
AGTTGTTTCCGATACCCGAG+GGG 0.719126 8_1:+79202879 Msa1217020:CDS
GGCATGCCTCCCCAACATGG+TGG 0.744567 8_1:+79202785 Msa1217020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAATTATTTAAATTA+AGG - chr8_1:79202466-79202485 None:intergenic 0.0%
!! TTATATTATATATAGTAGTA+TGG - chr8_1:79199787-79199806 None:intergenic 10.0%
!!! CAATTTTTTCAAATTAATAT+CGG + chr8_1:79200947-79200966 Msa1217020:intron 10.0%
!!! GAAAATATGTAAATTTTATA+GGG - chr8_1:79203044-79203063 None:intergenic 10.0%
!!! TGAAAATATGTAAATTTTAT+AGG - chr8_1:79203045-79203064 None:intergenic 10.0%
!! ATAATACTAACTAATTATAA+AGG + chr8_1:79204115-79204134 Msa1217020:three_prime_UTR 10.0%
!!! TATAATATTATTGGTTAAGA+AGG - chr8_1:79199751-79199770 None:intergenic 15.0%
!!! CGATATTAATTTGAAAAAAT+TGG - chr8_1:79200949-79200968 None:intergenic 15.0%
!! ATATTTACATGAATGAATAA+TGG + chr8_1:79201061-79201080 Msa1217020:intron 15.0%
!!! TGACAAAATGATATTTTTAT+AGG + chr8_1:79201506-79201525 Msa1217020:intron 15.0%
!!! GACAAAATGATATTTTTATA+GGG + chr8_1:79201507-79201526 Msa1217020:intron 15.0%
!! GTAATTGTTCAAAATATATA+AGG - chr8_1:79201813-79201832 None:intergenic 15.0%
!!! TATAACTTTTTTCATATGAT+GGG - chr8_1:79202279-79202298 None:intergenic 15.0%
!!! CATAAATTTTTCAAAATGTT+GGG - chr8_1:79202507-79202526 None:intergenic 15.0%
!!! AACATTTTGAAAAATTTATG+CGG + chr8_1:79202507-79202526 Msa1217020:intron 15.0%
!! AATTGAACAAAATTTATGTA+GGG - chr8_1:79203075-79203094 None:intergenic 15.0%
!! AAATTGAACAAAATTTATGT+AGG - chr8_1:79203076-79203095 None:intergenic 15.0%
!! TTTAATGTTTACATTGAAAA+GGG - chr8_1:79203619-79203638 None:intergenic 15.0%
!! ATTTAATGTTTACATTGAAA+AGG - chr8_1:79203620-79203639 None:intergenic 15.0%
!!! AATTTTGAAAAACAACATTT+CGG - chr8_1:79204044-79204063 None:intergenic 15.0%
!!! AATTTTTGAATGATTGATAC+AGG + chr8_1:79200385-79200404 Msa1217020:intron 20.0%
!!! AATGATGTGATATTTTGATT+TGG + chr8_1:79201122-79201141 Msa1217020:intron 20.0%
!!! TTTTGATTTGGATTTAACTT+TGG + chr8_1:79201134-79201153 Msa1217020:intron 20.0%
!!! GTATAACTTTTTTCATATGA+TGG - chr8_1:79202280-79202299 None:intergenic 20.0%
!!! GCATAAATTTTTCAAAATGT+TGG - chr8_1:79202508-79202527 None:intergenic 20.0%
!!! AATTTTAATTTTACCTCAAG+AGG - chr8_1:79202948-79202967 None:intergenic 20.0%
!!! TAAGTTGATCAAATTTATGT+AGG + chr8_1:79203178-79203197 Msa1217020:intron 20.0%
!!! AAGTTGATCAAATTTATGTA+GGG + chr8_1:79203179-79203198 Msa1217020:intron 20.0%
!! TGACTAAAAATATATTCAAC+TGG + chr8_1:79203238-79203257 Msa1217020:intron 20.0%
!!! TTCTGATATTTTAACAGATT+GGG + chr8_1:79203296-79203315 Msa1217020:intron 20.0%
!! ATGTCATAAGAAAAATACAA+AGG + chr8_1:79203835-79203854 Msa1217020:exon 20.0%
!! TGTCATAAGAAAAATACAAA+GGG + chr8_1:79203836-79203855 Msa1217020:exon 20.0%
!!! AAAATCTTAACTTTTTCTTG+CGG + chr8_1:79204158-79204177 Msa1217020:three_prime_UTR 20.0%
! ATATTAACCAACACAAACAA+AGG + chr8_1:79199820-79199839 Msa1217020:five_prime_UTR 25.0%
! AACAAACTCAAGAAAAAGAT+TGG + chr8_1:79200058-79200077 Msa1217020:CDS 25.0%
! TAGTTAATAGTGTCAAGTAA+TGG - chr8_1:79200142-79200161 None:intergenic 25.0%
! ATTGTCTCTTATATATGAAC+CGG - chr8_1:79200215-79200234 None:intergenic 25.0%
!! TATGTTGTTTATGTTTGTTG+AGG + chr8_1:79200584-79200603 Msa1217020:intron 25.0%
! ATAAGATTTCAATTCACAAC+AGG - chr8_1:79200628-79200647 None:intergenic 25.0%
! TATCCTCATAAAATACTTAC+TGG + chr8_1:79200681-79200700 Msa1217020:CDS 25.0%
! ATAAAATACTTACTGGTAGA+AGG + chr8_1:79200688-79200707 Msa1217020:CDS 25.0%
! TAAAATACTTACTGGTAGAA+GGG + chr8_1:79200689-79200708 Msa1217020:CDS 25.0%
!! TGAATAATGGAATTGAAAGA+TGG + chr8_1:79201074-79201093 Msa1217020:intron 25.0%
!! GTATGATATCTATACTTTTG+AGG + chr8_1:79202301-79202320 Msa1217020:intron 25.0%
! TATTAATTGATCATGTGTCT+TGG - chr8_1:79202404-79202423 None:intergenic 25.0%
!! ATATCCTCTTGTAGAATTTT+AGG + chr8_1:79202984-79203003 Msa1217020:intron 25.0%
!! TTTTATTGATACCAAGTACA+GGG + chr8_1:79203111-79203130 Msa1217020:intron 25.0%
! ATAAAACTTCACGATAAATG+AGG - chr8_1:79203146-79203165 None:intergenic 25.0%
!!! TCGTGAAGTTTTATAAAAGT+AGG + chr8_1:79203152-79203171 Msa1217020:intron 25.0%
!!! CGTGAAGTTTTATAAAAGTA+GGG + chr8_1:79203153-79203172 Msa1217020:intron 25.0%
!!! GTTCTGATATTTTAACAGAT+TGG + chr8_1:79203295-79203314 Msa1217020:intron 25.0%
!!! ATATTTTAACAGATTGGGAA+AGG + chr8_1:79203301-79203320 Msa1217020:intron 25.0%
!! TCTTTTAGATGGAAATTTGA+AGG + chr8_1:79203576-79203595 Msa1217020:CDS 25.0%
! GTCATAAGAAAAATACAAAG+GGG + chr8_1:79203837-79203856 Msa1217020:exon 25.0%
! ATTATTTAACTAGATAACGC+AGG + chr8_1:79203946-79203965 Msa1217020:three_prime_UTR 25.0%
!!! AAATCTTAACTTTTTCTTGC+GGG + chr8_1:79204159-79204178 Msa1217020:three_prime_UTR 25.0%
! TATCTAAACCGAAATTTGAA+CGG + chr8_1:79204207-79204226 Msa1217020:three_prime_UTR 25.0%
!!! TTAAGAACCTTATTTTGTCT+TGG + chr8_1:79204290-79204309 Msa1217020:three_prime_UTR 25.0%
GAGAATTGAAATTATGGGTT+GGG - chr8_1:79199697-79199716 None:intergenic 30.0%
GACTGGAGAATTGAAATTAT+GGG - chr8_1:79199702-79199721 None:intergenic 30.0%
!! CTTCCATTTTCTGTTTGTTA+TGG + chr8_1:79199916-79199935 Msa1217020:exon 30.0%
GATCCATAACAAACAGAAAA+TGG - chr8_1:79199922-79199941 None:intergenic 30.0%
! AGAGATTTTTCATGTGGATT+GGG - chr8_1:79200165-79200184 None:intergenic 30.0%
!! TCAACAAAAGTTGATGTATC+TGG + chr8_1:79200239-79200258 Msa1217020:intron 30.0%
! TGACTTAATTTTCTCTACGA+AGG + chr8_1:79200302-79200321 Msa1217020:intron 30.0%
! GACTTAATTTTCTCTACGAA+GGG + chr8_1:79200303-79200322 Msa1217020:intron 30.0%
!! ATGTTGTTTCTGAATGTCAT+TGG + chr8_1:79200349-79200368 Msa1217020:intron 30.0%
! ATTTTCAGTGTTTCAAGAAC+TGG + chr8_1:79200446-79200465 Msa1217020:CDS 30.0%
! TTTTCAGTGTTTCAAGAACT+GGG + chr8_1:79200447-79200466 Msa1217020:CDS 30.0%
!! CTATGTTTTTAATACACCTC+AGG + chr8_1:79200520-79200539 Msa1217020:CDS 30.0%
! CTACCAGTAAGTATTTTATG+AGG - chr8_1:79200687-79200706 None:intergenic 30.0%
! GAGAGTGAATATGATTCTTT+TGG + chr8_1:79200768-79200787 Msa1217020:CDS 30.0%
TAAATCTTCTCTCTACTATC+TGG + chr8_1:79200830-79200849 Msa1217020:intron 30.0%
ATCACATCATTGAACTAGAA+AGG - chr8_1:79201113-79201132 None:intergenic 30.0%
TTGTATTGAACCAATAGGAA+TGG + chr8_1:79201160-79201179 Msa1217020:intron 30.0%
! AATGATGTAGTTGCTGTTAT+TGG + chr8_1:79201212-79201231 Msa1217020:CDS 30.0%
!!! AGTTTTGACTTCTTTGAGAA+TGG - chr8_1:79201691-79201710 None:intergenic 30.0%
GTCAAAACTACTAATAGTAC+CGG + chr8_1:79201702-79201721 Msa1217020:CDS 30.0%
ATTCAATATGCTTCTAGTGA+TGG - chr8_1:79201839-79201858 None:intergenic 30.0%
GATAATATCTTTGTCAGCTT+TGG - chr8_1:79202051-79202070 None:intergenic 30.0%
ATATTGCACAAAAAGGCTTA+AGG - chr8_1:79202205-79202224 None:intergenic 30.0%
GATGAGTATATTGCACAAAA+AGG - chr8_1:79202212-79202231 None:intergenic 30.0%
TATACTCATCATTCTTGCAA+AGG + chr8_1:79202222-79202241 Msa1217020:CDS 30.0%
ATACTCATCATTCTTGCAAA+GGG + chr8_1:79202223-79202242 Msa1217020:CDS 30.0%
!!! TATACTTTTGAGGTATGCTT+GGG + chr8_1:79202311-79202330 Msa1217020:intron 30.0%
! TGAAGTTTGAAATCAAGTAC+AGG + chr8_1:79202553-79202572 Msa1217020:intron 30.0%
GCAATGATTTCGATTAAATG+AGG - chr8_1:79202589-79202608 None:intergenic 30.0%
!!! TTCTTTTGACGTCACTTTTA+TGG + chr8_1:79202764-79202783 Msa1217020:CDS 30.0%
TACAAGAGGATATGTATGTA+TGG - chr8_1:79202977-79202996 None:intergenic 30.0%
TATGCCTAAAATTCTACAAG+AGG - chr8_1:79202991-79203010 None:intergenic 30.0%
! CTTTTATTGATACCAAGTAC+AGG + chr8_1:79203110-79203129 Msa1217020:intron 30.0%
AAAGGTAGGATACTAATTGA+AGG + chr8_1:79203319-79203338 Msa1217020:CDS 30.0%
!!! TCAAAGCATGAGTTTTGAAT+TGG - chr8_1:79203654-79203673 None:intergenic 30.0%
TGTTGTATCGTGTATATTGA+GGG - chr8_1:79203878-79203897 None:intergenic 30.0%
ATGTTGTATCGTGTATATTG+AGG - chr8_1:79203879-79203898 None:intergenic 30.0%
TTGTCAAATAGTTGCATGTA+TGG + chr8_1:79203969-79203988 Msa1217020:three_prime_UTR 30.0%
TTAGTATTATAGTGCACGTA+TGG - chr8_1:79204105-79204124 None:intergenic 30.0%
! AAAAGATTGCTAATTTGCAG+AGG + chr8_1:79204244-79204263 Msa1217020:three_prime_UTR 30.0%
GAATAGTCCAAGACAAAATA+AGG - chr8_1:79204300-79204319 None:intergenic 30.0%
GGAGAATTGAAATTATGGGT+TGG - chr8_1:79199698-79199717 None:intergenic 35.0%
GGACTGGAGAATTGAAATTA+TGG - chr8_1:79199703-79199722 None:intergenic 35.0%
! ACAACAACCTTTGTTTGTGT+TGG - chr8_1:79199830-79199849 None:intergenic 35.0%
! TCACAAGGTGTTACAAAAGA+AGG - chr8_1:79199962-79199981 None:intergenic 35.0%
! ATAGTGTCAAGTAATGGAGT+AGG - chr8_1:79200136-79200155 None:intergenic 35.0%
! GAGAGATTTTTCATGTGGAT+TGG - chr8_1:79200166-79200185 None:intergenic 35.0%
TCAACAAAAGTCGATGTATC+TGG - chr8_1:79200285-79200304 None:intergenic 35.0%
TTTCAGTGTTTCAAGAACTG+GGG + chr8_1:79200448-79200467 Msa1217020:CDS 35.0%
! GGACATTTAGGTTCAAGTTT+AGG + chr8_1:79200470-79200489 Msa1217020:CDS 35.0%
! ACCTCAGGATAAGATTTTGT+GGG + chr8_1:79200535-79200554 Msa1217020:CDS 35.0%
! GATAAGATTTTGTGGGATGT+TGG + chr8_1:79200542-79200561 Msa1217020:CDS 35.0%
ATACCATGAGACAGACTAAT+GGG + chr8_1:79200721-79200740 Msa1217020:CDS 35.0%
! GAATATGATTCTTTTGGCAC+TGG + chr8_1:79200774-79200793 Msa1217020:CDS 35.0%
AGTTCAACTACTATTTCAGC+TGG + chr8_1:79200801-79200820 Msa1217020:CDS 35.0%
ACGTCTTCAAAATGAAGTGT+CGG - chr8_1:79200875-79200894 None:intergenic 35.0%
GGCAATTGTATTGAACCAAT+AGG + chr8_1:79201155-79201174 Msa1217020:intron 35.0%
TATGAAGCTATGAACAATGC+TGG + chr8_1:79201263-79201282 Msa1217020:CDS 35.0%
AAGAAGAAGCTTCAAATGGA+TGG - chr8_1:79201487-79201506 None:intergenic 35.0%
TGTCAAGAAGAAGCTTCAAA+TGG - chr8_1:79201491-79201510 None:intergenic 35.0%
TAGGGAGTAACAAAACGAAT+TGG + chr8_1:79201525-79201544 Msa1217020:intron 35.0%
!! TCAACACTTTTTGAAGAGCT+TGG + chr8_1:79201615-79201634 Msa1217020:CDS 35.0%
TCTATGTTATGACCATCAAC+AGG - chr8_1:79201657-79201676 None:intergenic 35.0%
GTGATAACATGGATCAATAC+AGG - chr8_1:79201729-79201748 None:intergenic 35.0%
ATCCATGTTATCACCGAAAA+AGG + chr8_1:79201735-79201754 Msa1217020:CDS 35.0%
ATTACCATGATACTTGTCAG+CGG - chr8_1:79201787-79201806 None:intergenic 35.0%
TGGAAAGCAATTCAAAGCAA+CGG + chr8_1:79201974-79201993 Msa1217020:CDS 35.0%
TTACACAACATACTTTGCAG+AGG + chr8_1:79202010-79202029 Msa1217020:CDS 35.0%
! TTGTTATTCTACCTGGTCAT+AGG - chr8_1:79202249-79202268 None:intergenic 35.0%
! AGAGAAGTTGTTATTCTACC+TGG - chr8_1:79202256-79202275 None:intergenic 35.0%
!!! CTATACTTTTGAGGTATGCT+TGG + chr8_1:79202310-79202329 Msa1217020:intron 35.0%
!! TTTTGAGGGCTAAGTCTATT+AGG + chr8_1:79202342-79202361 Msa1217020:intron 35.0%
TCAAAAGAACCACAATGTGT+AGG - chr8_1:79202753-79202772 None:intergenic 35.0%
GTCCTATGAGTTATGACAAA+TGG + chr8_1:79203260-79203279 Msa1217020:intron 35.0%
AGCCATTTGTCATAACTCAT+AGG - chr8_1:79203265-79203284 None:intergenic 35.0%
TTTAACAGATTGGGAAAGGT+AGG + chr8_1:79203305-79203324 Msa1217020:intron 35.0%
TCCAATTGATCCTTCTTCTA+CGG - chr8_1:79203515-79203534 None:intergenic 35.0%
TCCATCTAAAAGACCATCAA+GGG - chr8_1:79203569-79203588 None:intergenic 35.0%
TTCCATCTAAAAGACCATCA+AGG - chr8_1:79203570-79203589 None:intergenic 35.0%
TTTACATGACAACTATGCAG+TGG + chr8_1:79203674-79203693 Msa1217020:intron 35.0%
GTGATCCATGGTCAATATAT+CGG - chr8_1:79203720-79203739 None:intergenic 35.0%
GTTGTATCGTGTATATTGAG+GGG - chr8_1:79203877-79203896 None:intergenic 35.0%
!! GCAAAATTATGGTGTCATTG+AGG - chr8_1:79204014-79204033 None:intergenic 35.0%
TCGGAACTTCAGCAAAATTA+TGG - chr8_1:79204025-79204044 None:intergenic 35.0%
CGGTTTAGATAACAGAAATG+CGG - chr8_1:79204198-79204217 None:intergenic 35.0%
AAGCGATACCGTTCAAATTT+CGG - chr8_1:79204218-79204237 None:intergenic 35.0%
ATTGGTTAAGAAGGAGACGT+GGG - chr8_1:79199742-79199761 None:intergenic 40.0%
! TATTGGTTAAGAAGGAGACG+TGG - chr8_1:79199743-79199762 None:intergenic 40.0%
!! GGAAGAAGAAGTGTTCTTCT+GGG - chr8_1:79199986-79200005 None:intergenic 40.0%
!! AGGAAGAAGAAGTGTTCTTC+TGG - chr8_1:79199987-79200006 None:intergenic 40.0%
TTCCTTCTTCTCACTCTCAA+TGG + chr8_1:79200002-79200021 Msa1217020:CDS 40.0%
TCCTTCTTCTCACTCTCAAT+GGG + chr8_1:79200003-79200022 Msa1217020:CDS 40.0%
! TCATGCTTCACTTTCTGAGA+TGG + chr8_1:79200087-79200106 Msa1217020:CDS 40.0%
!! CATGCTTCACTTTCTGAGAT+GGG + chr8_1:79200088-79200107 Msa1217020:CDS 40.0%
! TGGTGGAGAGATTTTTCATG+TGG - chr8_1:79200171-79200190 None:intergenic 40.0%
CATGAAAAATCTCTCCACCA+AGG + chr8_1:79200171-79200190 Msa1217020:CDS 40.0%
GTCTCTTATATATGAACCGG+AGG - chr8_1:79200212-79200231 None:intergenic 40.0%
TTCAGTGTTTCAAGAACTGG+GGG + chr8_1:79200449-79200468 Msa1217020:CDS 40.0%
! CACCTCAGGATAAGATTTTG+TGG + chr8_1:79200534-79200553 Msa1217020:CDS 40.0%
TCCCACAAAATCTTATCCTG+AGG - chr8_1:79200539-79200558 None:intergenic 40.0%
CATACCATGAGACAGACTAA+TGG + chr8_1:79200720-79200739 Msa1217020:CDS 40.0%
! TAACCCATTAGTCTGTCTCA+TGG - chr8_1:79200727-79200746 None:intergenic 40.0%
!! AGACAGACTAATGGGTTATC+TGG + chr8_1:79200729-79200748 Msa1217020:CDS 40.0%
ACTACTATTTCAGCTGGACT+TGG + chr8_1:79200807-79200826 Msa1217020:CDS 40.0%
AACCAATAGGAATGGCTGTT+GGG + chr8_1:79201168-79201187 Msa1217020:intron 40.0%
! GTAGTTGCTGTTATTGGTGA+TGG + chr8_1:79201218-79201237 Msa1217020:CDS 40.0%
TTACCAACTGCTACTCTTGA+TGG + chr8_1:79201338-79201357 Msa1217020:CDS 40.0%
! CTTTGAGTAGTGCTCTAAGT+AGG + chr8_1:79201381-79201400 Msa1217020:CDS 40.0%
ACCTCTTAGAGAATTGAGAG+AGG + chr8_1:79201418-79201437 Msa1217020:CDS 40.0%
ACCTCTCTCAATTCTCTAAG+AGG - chr8_1:79201422-79201441 None:intergenic 40.0%
AGAATTGAGAGAGGTTGCAA+AGG + chr8_1:79201427-79201446 Msa1217020:CDS 40.0%
GGAGTAACAAAACGAATTGG+AGG + chr8_1:79201528-79201547 Msa1217020:CDS 40.0%
GAGCTTGGACTCTACTATAT+CGG + chr8_1:79201630-79201649 Msa1217020:CDS 40.0%
TACTATATCGGTCCTGTTGA+TGG + chr8_1:79201642-79201661 Msa1217020:CDS 40.0%
AACATGGATCAATACAGGAC+CGG - chr8_1:79201724-79201743 None:intergenic 40.0%
GCTGACAAGTATCATGGTAA+TGG + chr8_1:79201786-79201805 Msa1217020:intron 40.0%
TTCCTCACAGATATGTGAGT+TGG + chr8_1:79201913-79201932 Msa1217020:intron 40.0%
AACCAACTCACATATCTGTG+AGG - chr8_1:79201918-79201937 None:intergenic 40.0%
!!! GTGAGTTGGTTTGATTTTCC+AGG + chr8_1:79201927-79201946 Msa1217020:intron 40.0%
TTGAATTGCTTTCCAGTTGG+TGG - chr8_1:79201969-79201988 None:intergenic 40.0%
! GCTTTGAATTGCTTTCCAGT+TGG - chr8_1:79201972-79201991 None:intergenic 40.0%
! CAAAGCATCTTGTTGGGAAT+CGG - chr8_1:79202124-79202143 None:intergenic 40.0%
TAGACCTGCAGCAAATGTAA+CGG - chr8_1:79202171-79202190 None:intergenic 40.0%
GAATTTCATGTCCATACCAC+AGG + chr8_1:79202650-79202669 Msa1217020:intron 40.0%
GCTTCCTGTAAGATTTGCAA+TGG + chr8_1:79202698-79202717 Msa1217020:CDS 40.0%
CTGTCCATTGCAAATCTTAC+AGG - chr8_1:79202705-79202724 None:intergenic 40.0%
AAGAGGAATGCCTTTGTACT+CGG - chr8_1:79202931-79202950 None:intergenic 40.0%
!!! GGATTTTTAGTCCCTGTACT+TGG - chr8_1:79203125-79203144 None:intergenic 40.0%
GCTTCCTTAGTTGAACAACA+TGG + chr8_1:79203397-79203416 Msa1217020:CDS 40.0%
CAAGCCATGTTGTTCAACTA+AGG - chr8_1:79203404-79203423 None:intergenic 40.0%
ACCGTAGAAGAAGGATCAAT+TGG + chr8_1:79203511-79203530 Msa1217020:CDS 40.0%
GTAGAAGAAGGATCAATTGG+AGG + chr8_1:79203514-79203533 Msa1217020:CDS 40.0%
GAAGGATCAATTGGAGGATT+TGG + chr8_1:79203520-79203539 Msa1217020:CDS 40.0%
TTCTCATGTTGCTCAGTTCA+TGG + chr8_1:79203543-79203562 Msa1217020:CDS 40.0%
TCCATGGTCAATATATCGGT+CGG - chr8_1:79203716-79203735 None:intergenic 40.0%
TAAGACCAGCCATTGACAAT+TGG - chr8_1:79203750-79203769 None:intergenic 40.0%
GCAACAGTGTTCAACATACT+TGG + chr8_1:79203787-79203806 Msa1217020:CDS 40.0%
CATACTTGGACAAACAAGAG+AGG + chr8_1:79203801-79203820 Msa1217020:CDS 40.0%
!! ACAAACAAGAGAGGCATTAG+AGG + chr8_1:79203810-79203829 Msa1217020:CDS 40.0%
TGATTGTGAACGAAGTGGAC+TGG - chr8_1:79199719-79199738 None:intergenic 45.0%
!! AGTGTTCTTCTGGGATCACA+AGG - chr8_1:79199977-79199996 None:intergenic 45.0%
CCTTCTTCTCACTCTCAATG+GGG + chr8_1:79200004-79200023 Msa1217020:CDS 45.0%
! GTGTCAAGTAATGGAGTAGG+AGG - chr8_1:79200133-79200152 None:intergenic 45.0%
TGAGTGAAGTAGTACCTTGG+TGG - chr8_1:79200188-79200207 None:intergenic 45.0%
GGATGAGTGAAGTAGTACCT+TGG - chr8_1:79200191-79200210 None:intergenic 45.0%
GTACTACTTCACTCATCCTC+CGG + chr8_1:79200193-79200212 Msa1217020:intron 45.0%
TCAAGAACTGGGGGACATTT+AGG + chr8_1:79200458-79200477 Msa1217020:CDS 45.0%
! CGGTGTTAATGTGTCAGTGT+CGG + chr8_1:79200967-79200986 Msa1217020:intron 45.0%
GAACCAATAGGAATGGCTGT+TGG + chr8_1:79201167-79201186 Msa1217020:intron 45.0%
AAAGCTCCTACAGGTGGTAT+AGG - chr8_1:79201365-79201384 None:intergenic 45.0%
TGGAGGTCCTATGCATGAAT+TGG + chr8_1:79201545-79201564 Msa1217020:CDS 45.0%
TTCGCAGCCAATTCATGCAT+AGG - chr8_1:79201555-79201574 None:intergenic 45.0%
AAAGTTGACGAGTATGCTCG+TGG + chr8_1:79201573-79201592 Msa1217020:CDS 45.0%
TATGCTCGTGGTATGATCAG+TGG + chr8_1:79201585-79201604 Msa1217020:CDS 45.0%
!!! GGCCTTTTTCGGTGATAACA+TGG - chr8_1:79201740-79201759 None:intergenic 45.0%
! GGATCAAACTTGGTAACTCC+TGG - chr8_1:79201948-79201967 None:intergenic 45.0%
ACCAAGTTTGATCCACCAAC+TGG + chr8_1:79201954-79201973 Msa1217020:CDS 45.0%
!! TCCAGTTGGTGGATCAAACT+TGG - chr8_1:79201958-79201977 None:intergenic 45.0%
TATCGCAATACATGCTGCGA+TGG + chr8_1:79202067-79202086 Msa1217020:CDS 45.0%
ATCGCAATACATGCTGCGAT+GGG + chr8_1:79202068-79202087 Msa1217020:CDS 45.0%
! CCACGTCAAAGCATCTTGTT+GGG - chr8_1:79202130-79202149 None:intergenic 45.0%
CCAACAAGATGCTTTGACGT+GGG + chr8_1:79202128-79202147 Msa1217020:CDS 45.0%
CAACAAGATGCTTTGACGTG+GGG + chr8_1:79202129-79202148 Msa1217020:CDS 45.0%
!!! ACTTTTGAGGTATGCTTGGG+TGG + chr8_1:79202314-79202333 Msa1217020:intron 45.0%
TTTCATGTCCATACCACAGG+TGG + chr8_1:79202653-79202672 Msa1217020:intron 45.0%
ATCATGTACCACCTGTGGTA+TGG - chr8_1:79202664-79202683 None:intergenic 45.0%
AGATTTGCAATGGACAGAGC+TGG + chr8_1:79202708-79202727 Msa1217020:CDS 45.0%
!! ATGGACAGAGCTGGATTAGT+TGG + chr8_1:79202717-79202736 Msa1217020:CDS 45.0%
!! GCTGGATTAGTTGGATCAGA+TGG + chr8_1:79202726-79202745 Msa1217020:CDS 45.0%
TCAGATGGTCCTACACATTG+TGG + chr8_1:79202741-79202760 Msa1217020:CDS 45.0%
CAAAGCTCTGCTTCATCAGA+AGG - chr8_1:79202819-79202838 None:intergenic 45.0%
! TGAAGCAGAGCTTTGTCACA+TGG + chr8_1:79202824-79202843 Msa1217020:CDS 45.0%
!! GTACAAAGGCATTCCTCTTG+AGG + chr8_1:79202932-79202951 Msa1217020:CDS 45.0%
AGGAGAAAGAGTAGCCCTAT+TGG + chr8_1:79203339-79203358 Msa1217020:CDS 45.0%
GGAGAAAGAGTAGCCCTATT+GGG + chr8_1:79203340-79203359 Msa1217020:CDS 45.0%
CGAATCAAGGATCGATCCAA+TGG - chr8_1:79203460-79203479 None:intergenic 45.0%
! TTTTGCCAGACTGCGAATCA+AGG - chr8_1:79203473-79203492 None:intergenic 45.0%
CAGTCTGGCAAAATCACATG+AGG + chr8_1:79203480-79203499 Msa1217020:CDS 45.0%
GTTCTGATCACCGTAGAAGA+AGG + chr8_1:79203502-79203521 Msa1217020:CDS 45.0%
!! GCCCTTGATGGTCTTTTAGA+TGG + chr8_1:79203565-79203584 Msa1217020:CDS 45.0%
ACATGACAACTATGCAGTGG+AGG + chr8_1:79203677-79203696 Msa1217020:intron 45.0%
CCATGGTCAATATATCGGTC+GGG - chr8_1:79203715-79203734 None:intergenic 45.0%
ACCTGCTGACCAATTGTCAA+TGG + chr8_1:79203738-79203757 Msa1217020:CDS 45.0%
ACTGTTGCTGCTATGTGAGA+GGG - chr8_1:79203775-79203794 None:intergenic 45.0%
!! TATGATTATTATAATATTAT+TGG - chr8_1:79199760-79199779 None:intergenic 5.0%
GTGGGTGATTGTGAACGAAG+TGG - chr8_1:79199724-79199743 None:intergenic 50.0%
CCCCATTGAGAGTGAGAAGA+AGG - chr8_1:79200007-79200026 None:intergenic 50.0%
ACAGGAGCTGAAACAGCTTG+CGG + chr8_1:79200403-79200422 Msa1217020:intron 50.0%
TTTGTGGGATGTTGGTCACC+AGG + chr8_1:79200550-79200569 Msa1217020:CDS 50.0%
CAACATAACACCAACCCACC+TGG - chr8_1:79200571-79200590 None:intergenic 50.0%
CTCCCAACAGCCATTCCTAT+TGG - chr8_1:79201173-79201192 None:intergenic 50.0%
GCTGTTGGGAGAGATCTGAA+GGG + chr8_1:79201182-79201201 Msa1217020:CDS 50.0%
!! TGGTGATGGTGCTATGACAG+CGG + chr8_1:79201232-79201251 Msa1217020:CDS 50.0%
GGTCCATCAAGAGTAGCAGT+TGG - chr8_1:79201344-79201363 None:intergenic 50.0%
GATGGACCTATACCACCTGT+AGG + chr8_1:79201356-79201375 Msa1217020:CDS 50.0%
CTACTCAAAGCTCCTACAGG+TGG - chr8_1:79201371-79201390 None:intergenic 50.0%
GCACTACTCAAAGCTCCTAC+AGG - chr8_1:79201374-79201393 None:intergenic 50.0%
CGTGGTATGATCAGTGGTAC+TGG + chr8_1:79201591-79201610 Msa1217020:CDS 50.0%
GTTATCACCGAAAAAGGCCG+CGG + chr8_1:79201741-79201760 Msa1217020:CDS 50.0%
! TGGATATCCGCGGCCTTTTT+CGG - chr8_1:79201751-79201770 None:intergenic 50.0%
CAAGCCGCTGACAAGTATCA+TGG + chr8_1:79201780-79201799 Msa1217020:CDS 50.0%
ATCTTGTTGGGAATCGGCGA+TGG - chr8_1:79202118-79202137 None:intergenic 50.0%
CCCAACAAGATGCTTTGACG+TGG + chr8_1:79202127-79202146 Msa1217020:CDS 50.0%
! CCCACGTCAAAGCATCTTGT+TGG - chr8_1:79202131-79202150 None:intergenic 50.0%
! CATGCCGTTACATTTGCTGC+AGG + chr8_1:79202164-79202183 Msa1217020:CDS 50.0%
! TTTGAGGTATGCTTGGGTGG+AGG + chr8_1:79202317-79202336 Msa1217020:intron 50.0%
TTGAGGTATGCTTGGGTGGA+GGG + chr8_1:79202318-79202337 Msa1217020:intron 50.0%
! CTTGGGTGGAGGGTTTTTGA+GGG + chr8_1:79202328-79202347 Msa1217020:intron 50.0%
ACCACAGGTGGTACATGATG+TGG + chr8_1:79202665-79202684 Msa1217020:intron 50.0%
TCCACATCATGTACCACCTG+TGG - chr8_1:79202669-79202688 None:intergenic 50.0%
!! CTCGGGTATCGGAAACAACT+CGG - chr8_1:79202879-79202898 None:intergenic 50.0%
! GAGTTGTTTCCGATACCCGA+GGG + chr8_1:79202878-79202897 Msa1217020:CDS 50.0%
! AGTTGTTTCCGATACCCGAG+GGG + chr8_1:79202879-79202898 Msa1217020:CDS 50.0%
! ACACCAATGCCATTTCCCCT+CGG - chr8_1:79202897-79202916 None:intergenic 50.0%
GAACTTCCAGCCGAGTACAA+AGG + chr8_1:79202918-79202937 Msa1217020:CDS 50.0%
AGAGTAGCCCTATTGGGCTA+CGG + chr8_1:79203346-79203365 Msa1217020:CDS 50.0%
GTCAGCCGTTCAGAACTGTT+TGG + chr8_1:79203369-79203388 Msa1217020:CDS 50.0%
!! CGCAGCCAAACAGTTCTGAA+CGG - chr8_1:79203377-79203396 None:intergenic 50.0%
CGTTCAGAACTGTTTGGCTG+CGG + chr8_1:79203375-79203394 Msa1217020:CDS 50.0%
! TGGCTTGCAGAAACGTGCAT+CGG - chr8_1:79203440-79203459 None:intergenic 50.0%
TGCACGTTTCTGCAAGCCAT+TGG + chr8_1:79203441-79203460 Msa1217020:CDS 50.0%
! TCGATCCTTGATTCGCAGTC+TGG + chr8_1:79203465-79203484 Msa1217020:CDS 50.0%
CCCGACCGATATATTGACCA+TGG + chr8_1:79203712-79203731 Msa1217020:CDS 50.0%
ATTGGTCAGCAGGTGATCCA+TGG - chr8_1:79203732-79203751 None:intergenic 50.0%
GCCATTGACAATTGGTCAGC+AGG - chr8_1:79203742-79203761 None:intergenic 50.0%
GCTGACCAATTGTCAATGGC+TGG + chr8_1:79203742-79203761 Msa1217020:CDS 50.0%
CACTGTTGCTGCTATGTGAG+AGG - chr8_1:79203776-79203795 None:intergenic 50.0%
TGGGATGTTGGTCACCAGGT+GGG + chr8_1:79200554-79200573 Msa1217020:intron 55.0%
ATGTTGGTCACCAGGTGGGT+TGG + chr8_1:79200558-79200577 Msa1217020:intron 55.0%
!! GTCGGTGTCAGTTTCGTGTC+TGG + chr8_1:79200985-79201004 Msa1217020:intron 55.0%
GGCTGTTGGGAGAGATCTGA+AGG + chr8_1:79201181-79201200 Msa1217020:CDS 55.0%
!! GGTGATGGTGCTATGACAGC+GGG + chr8_1:79201233-79201252 Msa1217020:CDS 55.0%
GCTCTGCGTATGGATATCCG+CGG - chr8_1:79201761-79201780 None:intergenic 55.0%
GCAATACATGCTGCGATGGG+AGG + chr8_1:79202071-79202090 Msa1217020:CDS 55.0%
ATACATGCTGCGATGGGAGG+TGG + chr8_1:79202074-79202093 Msa1217020:CDS 55.0%
! GCTGCAGGTCTAGCTTGTGA+AGG + chr8_1:79202179-79202198 Msa1217020:CDS 55.0%
CTTGCAAAGGGCCTATGACC+AGG + chr8_1:79202235-79202254 Msa1217020:CDS 55.0%
! GCTTGGGTGGAGGGTTTTTG+AGG + chr8_1:79202327-79202346 Msa1217020:intron 55.0%
TATGGCATGCCTCCCCAACA+TGG + chr8_1:79202782-79202801 Msa1217020:CDS 55.0%
GAGCCATCACCACCATGTTG+GGG - chr8_1:79202797-79202816 None:intergenic 55.0%
GGAGCCATCACCACCATGTT+GGG - chr8_1:79202798-79202817 None:intergenic 55.0%
AGGAGCCATCACCACCATGT+TGG - chr8_1:79202799-79202818 None:intergenic 55.0%
ACAACTCGGTCGATCGTCGA+TGG - chr8_1:79202865-79202884 None:intergenic 55.0%
! CGAGTTGTTTCCGATACCCG+AGG + chr8_1:79202877-79202896 Msa1217020:CDS 55.0%
TTCCGATACCCGAGGGGAAA+TGG + chr8_1:79202885-79202904 Msa1217020:CDS 55.0%
! TGCCATTTCCCCTCGGGTAT+CGG - chr8_1:79202890-79202909 None:intergenic 55.0%
TACCCGAGGGGAAATGGCAT+TGG + chr8_1:79202891-79202910 Msa1217020:CDS 55.0%
! CACCAATGCCATTTCCCCTC+GGG - chr8_1:79202896-79202915 None:intergenic 55.0%
GGAATGCCTTTGTACTCGGC+TGG - chr8_1:79202927-79202946 None:intergenic 55.0%
GAGTAGCCCTATTGGGCTAC+GGG + chr8_1:79203347-79203366 Msa1217020:CDS 55.0%
GCTCAGTTCATGGCCCTTGA+TGG + chr8_1:79203553-79203572 Msa1217020:CDS 55.0%
GACAACTATGCAGTGGAGGC+CGG + chr8_1:79203681-79203700 Msa1217020:intron 55.0%
TATCGGTCGGGAAGAACCAC+CGG - chr8_1:79203703-79203722 None:intergenic 55.0%
GTGGGATGTTGGTCACCAGG+TGG + chr8_1:79200553-79200572 Msa1217020:intron 60.0%
! TCAGCGGCTTGCTCTGCGTA+TGG - chr8_1:79201771-79201790 None:intergenic 60.0%
CCATCACCACCATGTTGGGG+AGG - chr8_1:79202794-79202813 None:intergenic 60.0%
! CCTCCCCAACATGGTGGTGA+TGG + chr8_1:79202791-79202810 Msa1217020:CDS 60.0%
ATCGTCGATGGCTGCTGCAG+TGG - chr8_1:79202853-79202872 None:intergenic 60.0%
GGCTGACCCGTAGCCCAATA+GGG - chr8_1:79203356-79203375 None:intergenic 60.0%
AACTATGCAGTGGAGGCCGG+TGG + chr8_1:79203684-79203703 Msa1217020:intron 60.0%
GCTGCGATGGGAGGTGGAAC+TGG + chr8_1:79202080-79202099 Msa1217020:CDS 65.0%
GGCATGCCTCCCCAACATGG+TGG + chr8_1:79202785-79202804 Msa1217020:CDS 65.0%
CGGCTGACCCGTAGCCCAAT+AGG - chr8_1:79203357-79203376 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 79199662 79204327 79199662 ID=Msa1217020;Name=Msa1217020
chr8_1 mRNA 79199662 79204327 79199662 ID=Msa1217020-mRNA-1;Parent=Msa1217020;Name=Msa1217020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=273|1|1|1|1|1|9|484|714
chr8_1 exon 79199662 79200192 79199662 ID=Msa1217020-mRNA-1:exon:27478;Parent=Msa1217020-mRNA-1
chr8_1 exon 79200407 79200571 79200407 ID=Msa1217020-mRNA-1:exon:27479;Parent=Msa1217020-mRNA-1
chr8_1 exon 79200678 79200828 79200678 ID=Msa1217020-mRNA-1:exon:27480;Parent=Msa1217020-mRNA-1
chr8_1 exon 79201177 79201448 79201177 ID=Msa1217020-mRNA-1:exon:27481;Parent=Msa1217020-mRNA-1
chr8_1 exon 79201528 79201801 79201528 ID=Msa1217020-mRNA-1:exon:27482;Parent=Msa1217020-mRNA-1
chr8_1 exon 79201949 79202256 79201949 ID=Msa1217020-mRNA-1:exon:27483;Parent=Msa1217020-mRNA-1
chr8_1 exon 79202672 79202953 79202672 ID=Msa1217020-mRNA-1:exon:27484;Parent=Msa1217020-mRNA-1
chr8_1 exon 79203313 79203597 79203313 ID=Msa1217020-mRNA-1:exon:27485;Parent=Msa1217020-mRNA-1
chr8_1 exon 79203694 79204327 79203694 ID=Msa1217020-mRNA-1:exon:27486;Parent=Msa1217020-mRNA-1
chr8_1 five_prime_UTR 79199662 79199934 79199662 ID=Msa1217020-mRNA-1:five_prime_utr;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79199935 79200192 79199935 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79200407 79200571 79200407 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79200678 79200828 79200678 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79201177 79201448 79201177 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79201528 79201801 79201528 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79201949 79202256 79201949 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79202672 79202953 79202672 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79203313 79203597 79203313 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 CDS 79203694 79203843 79203694 ID=Msa1217020-mRNA-1:cds;Parent=Msa1217020-mRNA-1
chr8_1 three_prime_UTR 79203844 79204327 79203844 ID=Msa1217020-mRNA-1:three_prime_utr;Parent=Msa1217020-mRNA-1
Gene Sequence

>Msa1217020

ATGGATCTCTGTTCATTAGCATGTCCTTCTTTTGTAACACCTTGTGATCCCAGAAGAACACTTCTTCTTCCTTCTTCTCACTCTCAATGGGGTCTTCATTTCTTCGCTCACTCTCAACAACACAACAAACTCAAGAAAAAGATTGGTGTTGTTCATGCTTCACTTTCTGAGATGGGAGAATATTATTCTCAAAGACCTCCTACTCCATTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTCTCCACCAAGGAGCTGAAACAGCTTGCGGATGAACTACGTTCTGATGTTATTTTCAGTGTTTCAAGAACTGGGGGACATTTAGGTTCAAGTTTAGGTGTTGTTGAACTTACTATTGCTCTTCACTATGTTTTTAATACACCTCAGGATAAGATTTTGTGGGATGTTGGTCACCAGTCATATCCTCATAAAATACTTACTGGTAGAAGGGATAAGATGCATACCATGAGACAGACTAATGGGTTATCTGGATTTACAAAACGTTCTGAGAGTGAATATGATTCTTTTGGCACTGGTCATAGTTCAACTACTATTTCAGCTGGACTTGGAATGGCTGTTGGGAGAGATCTGAAGGGAAGAAAGAATGATGTAGTTGCTGTTATTGGTGATGGTGCTATGACAGCGGGTCAAGCTTATGAAGCTATGAACAATGCTGGATATCTTGATTCTGATATGATTGTAATTTTGAATGACAACAAACAAGTTTCTTTACCAACTGCTACTCTTGATGGACCTATACCACCTGTAGGAGCTTTGAGTAGTGCTCTAAGTAGGTTACAATCAAACAAACCTCTTAGAGAATTGAGAGAGGTTGCAAAGGGAGTAACAAAACGAATTGGAGGTCCTATGCATGAATTGGCTGCGAAAGTTGACGAGTATGCTCGTGGTATGATCAGTGGTACTGGATCAACACTTTTTGAAGAGCTTGGACTCTACTATATCGGTCCTGTTGATGGTCATAACATAGATGATCTAGTTGCCATTCTCAAAGAAGTCAAAACTACTAATAGTACCGGTCCTGTATTGATCCATGTTATCACCGAAAAAGGCCGCGGATATCCATACGCAGAGCAAGCCGCTGACAAGTATCATGGAGTTACCAAGTTTGATCCACCAACTGGAAAGCAATTCAAAGCAACGGCTAAAACGCAGTCTTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCAAAGCTGACAAAGATATTATCGCAATACATGCTGCGATGGGAGGTGGAACTGGCATGAATCTCTTCCATCGCCGATTCCCAACAAGATGCTTTGACGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCAGGTCTAGCTTGTGAAGGCCTTAAGCCTTTTTGTGCAATATACTCATCATTCTTGCAAAGGGCCTATGACCAGGTGGTACATGATGTGGATTTGCAAAAGCTTCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGATCAGATGGTCCTACACATTGTGGTTCTTTTGACGTCACTTTTATGGCATGCCTCCCCAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTGTCACATGGTTGCCACTGCAGCAGCCATCGACGATCGACCGAGTTGTTTCCGATACCCGAGGGGAAATGGCATTGGTGTTGAACTTCCAGCCGAGTACAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTAATTGAAGGAGAAAGAGTAGCCCTATTGGGCTACGGGTCAGCCGTTCAGAACTGTTTGGCTGCGGCTTCCTTAGTTGAACAACATGGCTTGCGCTTAACTGTTGCCGATGCACGTTTCTGCAAGCCATTGGATCGATCCTTGATTCGCAGTCTGGCAAAATCACATGAGGTTCTGATCACCGTAGAAGAAGGATCAATTGGAGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCCTTGATGGTCTTTTAGATGGAAATTTGAAGTGGAGGCCGGTGGTTCTTCCCGACCGATATATTGACCATGGATCACCTGCTGACCAATTGTCAATGGCTGGTCTTACACCCTCTCACATAGCAGCAACAGTGTTCAACATACTTGGACAAACAAGAGAGGCATTAGAGGTCATGTCATAA
Protein sequence

>Msa1217020

MDLCSLACPSFVTPCDPRRTLLLPSSHSQWGLHFFAHSQQHNKLKKKIGVVHASLSEMGEYYSQRPPTPLLDTINYPIHMKNLSTKELKQLADELRSDVIFSVSRTGGHLGSSLGVVELTIALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLKGRKNDVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNKPLRELREVAKGVTKRIGGPMHELAAKVDEYARGMISGTGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKTTNSTGPVLIHVITEKGRGYPYAEQAADKYHGVTKFDPPTGKQFKATAKTQSYTTYFAEALIAEAKADKDIIAIHAAMGGGTGMNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDRAGLVGSDGPTHCGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVELPAEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVEQHGLRLTVADARFCKPLDRSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPADQLSMAGLTPSHIAATVFNILGQTREALEVMS*