AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0148980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148980 MtrunA17_Chr1g0149651 94.989 439 10 3 1 430 1 436 0.0 853
Msa0148980 MtrunA17_Chr3g0137241 66.667 438 75 9 1 432 1 373 0.0 547
Msa0148980 MtrunA17_Chr2g0305101 82.331 266 43 2 167 429 90 354 3.50e-165 469
Msa0148980 MtrunA17_Chr4g0065241 82.213 253 43 2 167 417 66 318 1.06e-155 444
Msa0148980 MtrunA17_Chr5g0398181 70.566 265 72 2 172 430 28 292 1.13e-129 376
Msa0148980 MtrunA17_Chr1g0192791 35.600 250 130 8 172 414 20 245 4.51e-31 120
Msa0148980 MtrunA17_Chr2g0289201 31.148 244 143 3 172 414 118 337 3.72e-30 120
Msa0148980 MtrunA17_Chr5g0413201 34.553 246 134 5 172 414 73 294 9.90e-28 112
Msa0148980 MtrunA17_Chr1g0151961 33.333 246 138 6 172 414 120 342 1.88e-27 112
Msa0148980 MtrunA17_Chr5g0439391 31.429 245 134 5 174 414 49 263 5.38e-23 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148980 AT5G25220.2 64.773 440 124 8 1 430 1 419 0.0 529
Msa0148980 AT5G25220.1 64.692 439 124 8 1 429 1 418 0.0 528
Msa0148980 AT5G11060.1 74.622 331 58 5 106 429 71 382 3.40e-172 488
Msa0148980 AT4G32040.2 55.172 435 134 9 1 430 1 379 4.10e-152 436
Msa0148980 AT4G32040.1 55.046 436 135 9 1 431 1 380 4.36e-152 436
Msa0148980 AT1G62990.1 65.614 285 94 3 148 429 7 290 2.82e-131 380
Msa0148980 AT1G70510.1 35.433 254 133 9 165 414 63 289 7.02e-32 124
Msa0148980 AT1G70510.2 34.252 254 140 8 165 414 63 293 2.83e-30 119
Msa0148980 AT1G23380.1 35.458 251 123 8 172 414 86 305 4.79e-29 116
Msa0148980 AT4G08150.1 34.387 253 129 7 172 414 135 360 1.08e-27 114
Msa0148980 AT1G23380.2 35.178 253 123 9 172 414 86 307 3.52e-27 111
Msa0148980 AT1G62360.1 33.200 250 132 5 172 414 122 343 2.49e-26 110

Find 202 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATATGCTAAAACAAAT+TGG 0.156743 1_4:-9425755 Msa0148980:three_prime_UTR
TAGTATAATGCTACATAATT+AGG 0.212748 1_4:-9425782 Msa0148980:three_prime_UTR
GTGGTTTGGAGTTGGTTATT+AGG 0.252230 1_4:+9429320 None:intergenic
TTGTTCTTTAAATTGGTATT+TGG 0.257518 1_4:-9425590 Msa0148980:three_prime_UTR
AGGTACTAGGTAGCTATTAT+AGG 0.274059 1_4:+9429538 None:intergenic
ACCACCAAACGCAGAGTATT+TGG 0.277454 1_4:+9428812 None:intergenic
GTGTAATAACCACTAATCTT+AGG 0.277516 1_4:+9426334 None:intergenic
TCGGAATCAGGTTTGGAGTT+AGG 0.291079 1_4:+9429344 None:intergenic
ATCATCACACATACTTTGTT+TGG 0.293011 1_4:-9429880 Msa0148980:five_prime_UTR
TGGTTTGGAGTTGGTTATTA+GGG 0.296401 1_4:+9429321 None:intergenic
GGAAATGAAGATAAAATATT+GGG 0.297720 1_4:+9429711 None:intergenic
CTTGTCTTACACGCTCCATT+AGG 0.305466 1_4:+9426986 None:intergenic
TGAGTTGTTGTTATTGTTGT+TGG 0.307531 1_4:+9429397 None:intergenic
AGGAAATGAAGATAAAATAT+TGG 0.312300 1_4:+9429710 None:intergenic
TTATACTAAAGCAGGCCTTC+AGG 0.312512 1_4:+9425797 None:intergenic
AAACCATTTGTACAACAAAT+TGG 0.312918 1_4:+9425550 None:intergenic
AGAAGGAAAGGGAGGGAAGA+AGG 0.318735 1_4:+9429831 None:intergenic
CCACTAATCTTAGGGGAGTT+TGG 0.319284 1_4:+9426343 None:intergenic
GTCGGGTGAGTCTGGTAATA+TGG 0.319705 1_4:+9429367 None:intergenic
CAAACATACACACACTTGTT+TGG 0.322398 1_4:-9429499 Msa0148980:five_prime_UTR
AACTAAAGCAAATTAATAAC+TGG 0.324917 1_4:-9426479 Msa0148980:CDS
CACTGACGCCCTTCTTGTTA+AGG 0.338297 1_4:-9426314 Msa0148980:three_prime_UTR
CGGAATCAGGTTTGGAGTTA+GGG 0.345170 1_4:+9429345 None:intergenic
GTTAAACGTACTGTTGGATA+TGG 0.348322 1_4:+9426729 None:intergenic
TCAATCAAAGGAAGAGGAAT+TGG 0.349434 1_4:-9426452 Msa0148980:CDS
GGGGAAGAGTGAGGTGGCGG+TGG 0.352138 1_4:-9429018 Msa0148980:CDS
GCAAGGTTGGTGCAGGAAAC+TGG 0.359590 1_4:-9426507 Msa0148980:CDS
TTAGTGAAGGTTATAGTAAA+GGG 0.362730 1_4:-9426249 Msa0148980:three_prime_UTR
GAAGGAAAGGGAGGGAAGAA+GGG 0.362993 1_4:+9429832 None:intergenic
TGTTGTTATTGTTGTTGGTT+TGG 0.365581 1_4:+9429402 None:intergenic
CAATCCTTACAAAGCCTAAC+AGG 0.372024 1_4:-9427753 Msa0148980:intron
TCATTCTCTGTTGGTATAAG+AGG 0.376610 1_4:+9427015 None:intergenic
CAAAGAACTTGACCATTTCA+TGG 0.380421 1_4:-9428778 Msa0148980:intron
TGTAATAACCACTAATCTTA+GGG 0.381221 1_4:+9426335 None:intergenic
GGTGCGGATAACATGGGATT+TGG 0.387749 1_4:-9427039 Msa0148980:CDS
AGACGAGCTGGGAAACTTCC+TGG 0.389865 1_4:-9426801 Msa0148980:CDS
AAGAGTGAGGTGGCGGTGGA+TGG 0.389997 1_4:-9429014 Msa0148980:CDS
TGTACCTGTTAGGCTTTGTA+AGG 0.392039 1_4:+9427749 None:intergenic
AACTCCAAACCACACCTAAC+TGG 0.409860 1_4:-9429310 Msa0148980:CDS
TGGTTATTAGGGTCGGAATC+AGG 0.411326 1_4:+9429332 None:intergenic
GTGTCTGTGTCAATGCTTCA+TGG 0.412831 1_4:-9426073 Msa0148980:three_prime_UTR
GATGGAGACGGAGGAGGAGC+TGG 0.415977 1_4:-9428996 Msa0148980:CDS
CTTGTGAAAGATGTTGGTTT+TGG 0.416399 1_4:+9429450 None:intergenic
CAATGGAAGATGAAGAAGAA+GGG 0.419065 1_4:+9429785 None:intergenic
TTTATGTTTGTATAATATTG+AGG 0.421159 1_4:-9425683 Msa0148980:three_prime_UTR
TTGTCTTACACGCTCCATTA+GGG 0.421646 1_4:+9426987 None:intergenic
GTCTGACGATGAAGATGAAC+AGG 0.422271 1_4:-9427103 Msa0148980:CDS
TAATAAACATTCATCTTAAG+AGG 0.423129 1_4:-9425951 Msa0148980:three_prime_UTR
GAGGAGCTGGATTGGTGAAC+TGG 0.424541 1_4:-9428983 Msa0148980:CDS
GAGTTAGGGTCGGGTGAGTC+TGG 0.425434 1_4:+9429359 None:intergenic
TGACACAACTTCTGTCCTTA+AGG 0.425689 1_4:-9426778 Msa0148980:CDS
TGAGCCAGTTAGGTGTGGTT+TGG 0.429844 1_4:+9429306 None:intergenic
CGATTACTTCACCGTGTTGA+CGG 0.433544 1_4:+9429117 None:intergenic
CTTAGTGAAGGTTATAGTAA+AGG 0.438469 1_4:-9426250 Msa0148980:three_prime_UTR
CGGTGTCGGAAGTTTGTTGA+AGG 0.438867 1_4:+9429180 None:intergenic
ACTATATGCTAAAACAAATT+GGG 0.439403 1_4:-9425754 Msa0148980:three_prime_UTR
CCATGCAATGGAAGCTGTAA+TGG 0.441406 1_4:-9427793 Msa0148980:CDS
GAGGTGGAAGGCGGAGATAA+TGG 0.444829 1_4:-9428952 Msa0148980:CDS
TATACTAAAGCAGGCCTTCA+GGG 0.448190 1_4:+9425798 None:intergenic
GTTGCCCCTGTACCTTCTCC+AGG 0.448447 1_4:+9427129 None:intergenic
AACATCGACGGTGATGGACT+TGG 0.449142 1_4:-9429041 Msa0148980:CDS
GCATTCAAAGTAAAGGATAT+TGG 0.450187 1_4:-9426005 Msa0148980:three_prime_UTR
TGGTTTGGTCTGTGAAATGT+TGG 0.450755 1_4:+9429417 None:intergenic
TTGTTGCAATTGTTCTTTGA+AGG 0.451938 1_4:+9427827 None:intergenic
AGAGAATGAAAGGTCCCTAA+TGG 0.452095 1_4:-9427001 Msa0148980:CDS
ACATCGACGGTGATGGACTT+GGG 0.452431 1_4:-9429040 Msa0148980:CDS
ATTAGGGTCGGAATCAGGTT+TGG 0.452477 1_4:+9429337 None:intergenic
AGAAGGGGAGGGGTAGAATG+TGG 0.452710 1_4:+9429801 None:intergenic
CCAAACTCCCCTAAGATTAG+TGG 0.452857 1_4:-9426343 Msa0148980:three_prime_UTR
CGGCACATGTGGCGTGTTTG+AGG 0.457717 1_4:-9428902 Msa0148980:CDS
TTTGTGTTGTTGGTTTGGTT+GGG 0.459054 1_4:+9429648 None:intergenic
TACTTGCTTCAGATTAGCAT+TGG 0.459631 1_4:+9425879 None:intergenic
TGGAAGCTGTAATGGCTTGT+TGG 0.463261 1_4:-9427785 Msa0148980:CDS
GTGATTGCCACCAAGCCTTA+AGG 0.468131 1_4:+9426763 None:intergenic
TTATGTTTGTATAATATTGA+GGG 0.468226 1_4:-9425682 Msa0148980:three_prime_UTR
TAATCTGAAGCAAGTACAAC+AGG 0.468598 1_4:-9425872 Msa0148980:three_prime_UTR
ATAGCGTTGTTGAGCCAGTT+AGG 0.469554 1_4:+9429296 None:intergenic
GGTGTAATTTCAGTAAAGAA+AGG 0.473395 1_4:-9425984 Msa0148980:three_prime_UTR
ATCGACAACGTCACCATGGC+CGG 0.473816 1_4:-9429098 Msa0148980:CDS
TTGGAGTTGGTTATTAGGGT+CGG 0.474556 1_4:+9429325 None:intergenic
AAATACTCTGCGTTTGGTGG+TGG 0.474689 1_4:-9428810 Msa0148980:CDS
AGGGACCTTTCATTCTCTGT+TGG 0.480001 1_4:+9427006 None:intergenic
GTTGTATGAACAGTTGTTGT+CGG 0.481534 1_4:-9428922 Msa0148980:CDS
GGAAGCTGTAATGGCTTGTT+GGG 0.483636 1_4:-9427784 Msa0148980:CDS
TACCATGGTATTGAACTTGA+AGG 0.485015 1_4:+9429565 None:intergenic
GTGTAATTTCAGTAAAGAAA+GGG 0.485825 1_4:-9425983 Msa0148980:three_prime_UTR
GTGCTCTACTTCTCCGGCCA+TGG 0.486886 1_4:+9429085 None:intergenic
CCGTGCAAACCACCGGTCAA+TGG 0.487735 1_4:-9429160 Msa0148980:CDS
AGTTAGGTGTGGTTTGGAGT+TGG 0.488164 1_4:+9429312 None:intergenic
TTCAAGACAGTAGAGGTTGA+AGG 0.491189 1_4:+9426420 None:intergenic
TGATGGCGGTGCGGATAACA+TGG 0.492193 1_4:-9427046 Msa0148980:CDS
GCCAAATACTCTGCGTTTGG+TGG 0.493142 1_4:-9428813 Msa0148980:CDS
ATCAGGTTTGGAGTTAGGGT+CGG 0.495240 1_4:+9429349 None:intergenic
CTGGCAGATGGGGAGGTGGA+AGG 0.496148 1_4:-9428964 Msa0148980:CDS
TGTGGAGTAGAAAGAAGGAA+AGG 0.497010 1_4:+9429819 None:intergenic
ATTAGTATAATATAATCATA+AGG 0.498053 1_4:+9425620 None:intergenic
TCTTGAAGAGCAAACGCAAA+AGG 0.498087 1_4:-9426404 Msa0148980:CDS
CCACCGGTCAATGGCTTGCA+CGG 0.499073 1_4:-9429151 Msa0148980:CDS
CATTCTCTGTTGGTATAAGA+GGG 0.502060 1_4:+9427016 None:intergenic
TAACTCGTGCTCTACTTCTC+CGG 0.503885 1_4:+9429079 None:intergenic
GCGGTGGATGGAGACGGAGG+AGG 0.505247 1_4:-9429002 Msa0148980:CDS
TCCGTTACCGTCAGTGTCGT+TGG 0.506455 1_4:+9429220 None:intergenic
CAACTTCTGTCCTTAAGGCT+TGG 0.507609 1_4:-9426773 Msa0148980:CDS
GTTGTTGTTGTCGGTGTAGT+GGG 0.509535 1_4:+9429265 None:intergenic
CTTCTGTCCTTAAGGCTTGG+TGG 0.509687 1_4:-9426770 Msa0148980:CDS
AGACGGAGGAGGAGCTGGAT+TGG 0.510601 1_4:-9428991 Msa0148980:CDS
GTTTCACCTGGAGAAGGTAC+AGG 0.511536 1_4:-9427135 Msa0148980:CDS
AGATAAAGCAAGGTTGGTGC+AGG 0.511577 1_4:-9426514 Msa0148980:CDS
TGTGATTTCCTTAACAAGAA+GGG 0.511966 1_4:+9426306 None:intergenic
CCATTACAGCTTCCATTGCA+TGG 0.512486 1_4:+9427793 None:intergenic
ATGTGATTTCCTTAACAAGA+AGG 0.513302 1_4:+9426305 None:intergenic
ACCGGTGGTTTGCACGGTGT+CGG 0.514390 1_4:+9429166 None:intergenic
ATGTAGCATTATACTAAAGC+AGG 0.515908 1_4:+9425789 None:intergenic
TCAGGTTTGGAGTTAGGGTC+GGG 0.519463 1_4:+9429350 None:intergenic
CATCGACGGTGATGGACTTG+GGG 0.520169 1_4:-9429039 Msa0148980:CDS
GTGGAGTAGAAAGAAGGAAA+GGG 0.524686 1_4:+9429820 None:intergenic
TGAACTGGCAGATGGGGAGG+TGG 0.525868 1_4:-9428968 Msa0148980:CDS
GCAACTCTTGTGAAAGATGT+TGG 0.526828 1_4:+9429444 None:intergenic
GAAAATTGTGGACATAAGAG+AGG 0.527462 1_4:-9426838 Msa0148980:CDS
TGGATTGGTGAACTGGCAGA+TGG 0.530194 1_4:-9428976 Msa0148980:CDS
GTACCAACACTACAGATTGA+AGG 0.530230 1_4:-9426208 Msa0148980:three_prime_UTR
GTGGCCAAATACTCTGCGTT+TGG 0.531063 1_4:-9428816 Msa0148980:CDS
ATAACTGGTTTATCAATCAA+AGG 0.531319 1_4:-9426464 Msa0148980:CDS
TCATACATTATAGGGTTACA+AGG 0.531432 1_4:-9426862 Msa0148980:intron
GTGTGATGATGTGTATAAAG+TGG 0.532464 1_4:+9429893 None:intergenic
TGTTGTTGTTGTCGGTGTAG+TGG 0.532560 1_4:+9429264 None:intergenic
GAGGTGGCGGTGGATGGAGA+CGG 0.532603 1_4:-9429008 Msa0148980:CDS
TGGTCTGTGAAATGTTGGAT+TGG 0.533649 1_4:+9429422 None:intergenic
TAGAATGTGGAGTAGAAAGA+AGG 0.533922 1_4:+9429814 None:intergenic
GAGTAGAAAGAAGGAAAGGG+AGG 0.538292 1_4:+9429823 None:intergenic
CCATTGACCGGTGGTTTGCA+CGG 0.539128 1_4:+9429160 None:intergenic
ATCGACGGTGATGGACTTGG+GGG 0.539928 1_4:-9429038 Msa0148980:CDS
AAGAGCAGCATTCAAAGTAA+AGG 0.541009 1_4:-9426012 Msa0148980:three_prime_UTR
ACATGTCCGCGTCCATGCAA+TGG 0.541622 1_4:-9427805 Msa0148980:CDS
CGACCGTGCAAGCCATTGAC+CGG 0.542113 1_4:+9429148 None:intergenic
GGAAGATGAAGAAGAAGGGG+AGG 0.543071 1_4:+9429789 None:intergenic
GCACGAGTTAAGTAATATGA+AGG 0.544289 1_4:-9429066 Msa0148980:CDS
GGAGGAAGATAAAGCAAGGT+TGG 0.544598 1_4:-9426520 Msa0148980:CDS
GATTGGTGAACTGGCAGATG+GGG 0.546447 1_4:-9428974 Msa0148980:CDS
AAGATGAAGAAGAAGGGGAG+GGG 0.547641 1_4:+9429791 None:intergenic
TGGTGAACTGGCAGATGGGG+AGG 0.547939 1_4:-9428971 Msa0148980:CDS
ACAATGGAAGATGAAGAAGA+AGG 0.547992 1_4:+9429784 None:intergenic
TACTGTTGGATATGGCCACT+TGG 0.548498 1_4:+9426737 None:intergenic
AGAAGGGACGTTGTTGTGAT+CGG 0.549064 1_4:+9429848 None:intergenic
ATCCTCGGTAACTGATCCAC+CGG 0.551656 1_4:+9428870 None:intergenic
GGATTGGTGAACTGGCAGAT+GGG 0.560565 1_4:-9428975 Msa0148980:CDS
TCCGACACCGTGCAAACCAC+CGG 0.562776 1_4:-9429167 Msa0148980:CDS
AAGGATAACATCGACGGTGA+TGG 0.564146 1_4:-9429047 Msa0148980:CDS
ATGTTTGTATAATATTGAGG+GGG 0.568452 1_4:-9425680 Msa0148980:three_prime_UTR
GAAGATGAAGAAGAAGGGGA+GGG 0.568649 1_4:+9429790 None:intergenic
GTGGCGGTGGATGGAGACGG+AGG 0.571035 1_4:-9429005 Msa0148980:CDS
CAGCTTCCATTGCATGGACG+CGG 0.571610 1_4:+9427799 None:intergenic
TTATACCAACAGAGAATGAA+AGG 0.571808 1_4:-9427011 Msa0148980:CDS
GGTTTATCAATCAAAGGAAG+AGG 0.572061 1_4:-9426458 Msa0148980:CDS
AATGGAAGATGAAGAAGAAG+GGG 0.572890 1_4:+9429786 None:intergenic
GCAGATGGGGAGGTGGAAGG+CGG 0.573467 1_4:-9428961 Msa0148980:CDS
TTCAGGAGGAAGATAAAGCA+AGG 0.577710 1_4:-9426524 Msa0148980:intron
TTTCACCTGGAGAAGGTACA+GGG 0.580246 1_4:-9427134 Msa0148980:CDS
ACCATGGTATTGAACTTGAA+GGG 0.581310 1_4:+9429566 None:intergenic
TATGTTTGTATAATATTGAG+GGG 0.583085 1_4:-9425681 Msa0148980:three_prime_UTR
GTGTTAGAAAACAAGGTACT+AGG 0.585673 1_4:+9429525 None:intergenic
ACGCCTTCAATCTGTAGTGT+TGG 0.589859 1_4:+9426205 None:intergenic
GACGTTACCAACGACACTGA+CGG 0.592534 1_4:-9429227 Msa0148980:CDS
AGGACAGAAGTTGTGTCACC+AGG 0.595424 1_4:+9426783 None:intergenic
TGTTTGTATAATATTGAGGG+GGG 0.595517 1_4:-9425679 Msa0148980:three_prime_UTR
GCATGAACAGGAGTTTCACC+TGG 0.596871 1_4:-9427147 Msa0148980:intron
ACAGTTGTTGTCGGCACATG+TGG 0.599267 1_4:-9428913 Msa0148980:CDS
AGTAGAAAGAAGGAAAGGGA+GGG 0.605937 1_4:+9429824 None:intergenic
CCGTGCAAGCCATTGACCGG+TGG 0.606475 1_4:+9429151 None:intergenic
GTTGTTGAGCCAGTTAGGTG+TGG 0.606546 1_4:+9429301 None:intergenic
GAGAGAATATGACAAGACAA+TGG 0.607541 1_4:+9429768 None:intergenic
TAGTGAAGGTTATAGTAAAG+GGG 0.612085 1_4:-9426248 Msa0148980:three_prime_UTR
GTGTCAAAACTAATCCCTGA+AGG 0.612852 1_4:-9425812 Msa0148980:three_prime_UTR
TTTGCTCTTCAAGACAGTAG+AGG 0.614890 1_4:+9426413 None:intergenic
AAACAAAGAAGTCTGTTGAG+AGG 0.615706 1_4:-9426037 Msa0148980:three_prime_UTR
GGGTTACAAGGAGAAAATTG+TGG 0.616009 1_4:-9426850 Msa0148980:CDS
GTGTTTGAGGATAGCAACGC+CGG 0.619072 1_4:-9428889 Msa0148980:CDS
GGTATTTGGAATGTATGTAA+AGG 0.619348 1_4:-9425576 Msa0148980:three_prime_UTR
GCTAACTGAGCATCAATCCT+CGG 0.622785 1_4:+9428855 None:intergenic
GCTATTATAGGTTTATACCA+TGG 0.623092 1_4:+9429550 None:intergenic
GAAATGAAGATAAAATATTG+GGG 0.623884 1_4:+9429712 None:intergenic
ACCAACGACACTGACGGTAA+CGG 0.624558 1_4:-9429221 Msa0148980:CDS
ACAGGAGTTTCACCTGGAGA+AGG 0.631882 1_4:-9427141 Msa0148980:intron
TTACTTCACCGTGTTGACGG+TGG 0.635014 1_4:+9429120 None:intergenic
GACAACAACTGTTCATACAA+CGG 0.638324 1_4:+9428924 None:intergenic
ACCCTTCAAGTTCAATACCA+TGG 0.643322 1_4:-9429567 Msa0148980:five_prime_UTR
GATGGCGGTGCGGATAACAT+GGG 0.643909 1_4:-9427045 Msa0148980:CDS
GTTAGCACAGTCTCAGAATG+TGG 0.643950 1_4:-9428838 Msa0148980:CDS
AGTGACGCAAATCTGTTCGA+TGG 0.645362 1_4:-9427075 Msa0148980:CDS
TTTGAGGATAGCAACGCCGG+TGG 0.647198 1_4:-9428886 Msa0148980:CDS
GTAATAACCACTAATCTTAG+GGG 0.651167 1_4:+9426336 None:intergenic
TGACGATGATACGTAGACAC+TGG 0.656338 1_4:+9426101 None:intergenic
AGTAATCGACAACGTCACCA+TGG 0.656467 1_4:-9429102 Msa0148980:CDS
TTTGTGTGTGTTAGAAAACA+AGG 0.663445 1_4:+9429518 None:intergenic
TCGATTCTCCACCGTCAACA+CGG 0.669076 1_4:-9429128 Msa0148980:CDS
AATATGAAGGATAACATCGA+CGG 0.669534 1_4:-9429053 Msa0148980:CDS
CGCCGGTGGATCAGTTACCG+AGG 0.669945 1_4:-9428872 Msa0148980:CDS
TCGACGGTGATGGACTTGGG+GGG 0.674235 1_4:-9429037 Msa0148980:CDS
AGCACAGTCTCAGAATGTGG+TGG 0.676786 1_4:-9428835 Msa0148980:CDS
TGTCGGTGTAGTGGGTACGA+AGG 0.706118 1_4:+9429273 None:intergenic
GGTGGCAATCACATTCCAAG+TGG 0.712840 1_4:-9426752 Msa0148980:CDS
TTCACCTGGAGAAGGTACAG+GGG 0.738308 1_4:-9427133 Msa0148980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTATGATTAAAATAAA+AGG + chr1_4:9428629-9428648 None:intergenic 10.0%
!!! TTATTTTAATCATACATTAT+AGG - chr1_4:9428630-9428649 Msa0148980:intron 10.0%
!!! TATTTTAATCATACATTATA+GGG - chr1_4:9428631-9428650 Msa0148980:intron 10.0%
!! TTAAGCAAAAATATAAATAA+CGG + chr1_4:9428938-9428957 None:intergenic 10.0%
!! ATTAGTATAATATAATCATA+AGG + chr1_4:9429884-9429903 None:intergenic 10.0%
!!! GTGTGTTTTTTTTTTTTTTT+TGG + chr1_4:9425770-9425789 None:intergenic 15.0%
!!! GATGTTTTTTTATTTATTGT+GGG + chr1_4:9425820-9425839 None:intergenic 15.0%
!!! TGATGTTTTTTTATTTATTG+TGG + chr1_4:9425821-9425840 None:intergenic 15.0%
!!! GTTTTTTTTGTTAAGTTTTA+TGG - chr1_4:9426024-9426043 Msa0148980:three_prime_UTR 15.0%
!! AAATTAGTAATTAATCCAAA+AGG + chr1_4:9426898-9426917 None:intergenic 15.0%
!!! AAACTAGTACTTTTATATTT+AGG - chr1_4:9429125-9429144 Msa0148980:CDS 15.0%
!!! AACTAGTACTTTTATATTTA+GGG - chr1_4:9429126-9429145 Msa0148980:CDS 15.0%
!! TTTATGTTTGTATAATATTG+AGG - chr1_4:9429818-9429837 Msa0148980:five_prime_UTR 15.0%
!! TTATGTTTGTATAATATTGA+GGG - chr1_4:9429819-9429838 Msa0148980:five_prime_UTR 15.0%
!! GAAATGAAGATAAAATATTG+GGG + chr1_4:9425792-9425811 None:intergenic 20.0%
!! GGAAATGAAGATAAAATATT+GGG + chr1_4:9425793-9425812 None:intergenic 20.0%
!! AGGAAATGAAGATAAAATAT+TGG + chr1_4:9425794-9425813 None:intergenic 20.0%
!! AAAAAGAATATACCATGAAA+TGG + chr1_4:9426738-9426757 None:intergenic 20.0%
!! AAAAAGAACAATGAGATAAA+TGG + chr1_4:9426800-9426819 None:intergenic 20.0%
!! TTTCTTGTAACAAAAATTTG+TGG + chr1_4:9426843-9426862 None:intergenic 20.0%
!!! CTTATTATTACAGTTGTTTT+TGG - chr1_4:9426945-9426964 Msa0148980:intron 20.0%
!!! AATTGGTTTGTATTTTATGT+TGG - chr1_4:9426997-9427016 Msa0148980:CDS 20.0%
!! AGTTGAACAGAATTAAAATT+TGG - chr1_4:9427020-9427039 Msa0148980:CDS 20.0%
!!! ATTAAAATTTGGTAGTTTTG+TGG - chr1_4:9427031-9427050 Msa0148980:CDS 20.0%
!!! ATGAAAATGCAATTTTGAAT+TGG - chr1_4:9427096-9427115 Msa0148980:CDS 20.0%
!!! TTGTGATTTCAATGTATTTT+TGG - chr1_4:9427134-9427153 Msa0148980:CDS 20.0%
!! TTTGAATTTATGAGAAATCA+TGG - chr1_4:9427196-9427215 Msa0148980:intron 20.0%
!! TTGAATTTATGAGAAATCAT+GGG - chr1_4:9427197-9427216 Msa0148980:intron 20.0%
!!! ATGAGATTTTTTTTGTACAT+AGG - chr1_4:9427300-9427319 Msa0148980:intron 20.0%
!!! TGAGATTTTTTTTGTACATA+GGG - chr1_4:9427301-9427320 Msa0148980:intron 20.0%
!!! CTAGATTTTATTACCAAATA+AGG - chr1_4:9427449-9427468 Msa0148980:intron 20.0%
!!! ATCATTTTTACTTGTCAAAT+AGG + chr1_4:9428319-9428338 None:intergenic 20.0%
!! GGAATAGTTATTAAAAAGAA+GGG + chr1_4:9428592-9428611 None:intergenic 20.0%
!! AACTAAAGCAAATTAATAAC+TGG - chr1_4:9429022-9429041 Msa0148980:CDS 20.0%
!! TAATAAACATTCATCTTAAG+AGG - chr1_4:9429550-9429569 Msa0148980:five_prime_UTR 20.0%
!! TAGTATAATGCTACATAATT+AGG - chr1_4:9429719-9429738 Msa0148980:five_prime_UTR 20.0%
!! TACTATATGCTAAAACAAAT+TGG - chr1_4:9429746-9429765 Msa0148980:five_prime_UTR 20.0%
!! ACTATATGCTAAAACAAATT+GGG - chr1_4:9429747-9429766 Msa0148980:five_prime_UTR 20.0%
!! TATGTTTGTATAATATTGAG+GGG - chr1_4:9429820-9429839 Msa0148980:five_prime_UTR 20.0%
!!! GTTGTTTTTGTTCTTTAAAT+TGG - chr1_4:9429904-9429923 Msa0148980:five_prime_UTR 20.0%
!! TTGTTCTTTAAATTGGTATT+TGG - chr1_4:9429911-9429930 Msa0148980:five_prime_UTR 20.0%
!!! TTTTTATTTATTGTGGGACT+AGG + chr1_4:9425814-9425833 None:intergenic 25.0%
! ATAAATGGCAAAGAAATTTG+AGG + chr1_4:9426785-9426804 None:intergenic 25.0%
!! AGTAACAATTTTTCTGTTTG+TGG - chr1_4:9426865-9426884 Msa0148980:intron 25.0%
!!! CAGTTGTTTTTGGATTTTTA+TGG - chr1_4:9426955-9426974 Msa0148980:intron 25.0%
! ATGGAATCATGTGATAAATA+TGG - chr1_4:9426974-9426993 Msa0148980:CDS 25.0%
! TCATGTGATAAATATGGAAT+TGG - chr1_4:9426980-9426999 Msa0148980:CDS 25.0%
! TGAATTTATGAGAAATCATG+GGG - chr1_4:9427198-9427217 Msa0148980:intron 25.0%
!!! GAGATTTTTTTTGTACATAG+GGG - chr1_4:9427302-9427321 Msa0148980:intron 25.0%
! GTTTATTCAAAAACTGGAAA+GGG + chr1_4:9427343-9427362 None:intergenic 25.0%
! TGTTTATTCAAAAACTGGAA+AGG + chr1_4:9427344-9427363 None:intergenic 25.0%
!! TTTAAAACAGAACTAAGAGA+AGG + chr1_4:9427401-9427420 None:intergenic 25.0%
!! TTTTATTACCAAATAAGGAG+CGG - chr1_4:9427454-9427473 Msa0148980:intron 25.0%
!!! GTTAATTACATTTTAGTCAC+TGG + chr1_4:9427534-9427553 None:intergenic 25.0%
!! ATGATGGAATGAAAATAACT+TGG - chr1_4:9427835-9427854 Msa0148980:CDS 25.0%
! AAAAGTGATTACAGAAAATG+TGG + chr1_4:9427862-9427881 None:intergenic 25.0%
! TAATCAAGGGAACATAATAT+AGG + chr1_4:9427887-9427906 None:intergenic 25.0%
!! TTTAGTAATTCTGTCTGTTT+TGG - chr1_4:9427917-9427936 Msa0148980:intron 25.0%
!!! GTGTTTGAAGAAAGTATTAA+AGG - chr1_4:9428009-9428028 Msa0148980:intron 25.0%
! TCCAATCAAACCTAAAAAAT+GGG + chr1_4:9428255-9428274 None:intergenic 25.0%
! GGGAATAGTTATTAAAAAGA+AGG + chr1_4:9428593-9428612 None:intergenic 25.0%
! TATATAGTTAAACGTACTGT+TGG + chr1_4:9428781-9428800 None:intergenic 25.0%
!! TAATGTATTATGTGCTTTTC+AGG - chr1_4:9428960-9428979 Msa0148980:CDS 25.0%
!! ATAACTGGTTTATCAATCAA+AGG - chr1_4:9429037-9429056 Msa0148980:CDS 25.0%
! TGTAATAACCACTAATCTTA+GGG + chr1_4:9429169-9429188 None:intergenic 25.0%
! TAAAAATAACAAAGCAAGAG+AGG + chr1_4:9429225-9429244 None:intergenic 25.0%
!!! TCTCTTGCTTTGTTATTTTT+AGG - chr1_4:9429224-9429243 Msa0148980:CDS 25.0%
!!! CTCTTGCTTTGTTATTTTTA+GGG - chr1_4:9429225-9429244 Msa0148980:CDS 25.0%
! TTAGTGAAGGTTATAGTAAA+GGG - chr1_4:9429252-9429271 Msa0148980:CDS 25.0%
! GTGTAATTTCAGTAAAGAAA+GGG - chr1_4:9429518-9429537 Msa0148980:five_prime_UTR 25.0%
!!! TCTAGTGTTATTAGTCTTTT+TGG - chr1_4:9429573-9429592 Msa0148980:five_prime_UTR 25.0%
! ATGTTTGTATAATATTGAGG+GGG - chr1_4:9429821-9429840 Msa0148980:five_prime_UTR 25.0%
ATCATCACACATACTTTGTT+TGG - chr1_4:9425621-9425640 Msa0148980:three_prime_UTR 30.0%
! TTTGTGATGTTTTGTGTTGT+TGG + chr1_4:9425866-9425885 None:intergenic 30.0%
GCTATTATAGGTTTATACCA+TGG + chr1_4:9425954-9425973 None:intergenic 30.0%
TTTGTGTGTGTTAGAAAACA+AGG + chr1_4:9425986-9426005 None:intergenic 30.0%
! TGTTGTTATTGTTGTTGGTT+TGG + chr1_4:9426102-9426121 None:intergenic 30.0%
! TGAGTTGTTGTTATTGTTGT+TGG + chr1_4:9426107-9426126 None:intergenic 30.0%
! ATTGTTGTTGTTGTTGTTGT+CGG + chr1_4:9426248-9426267 None:intergenic 30.0%
AATATGAAGGATAACATCGA+CGG - chr1_4:9426448-9426467 Msa0148980:CDS 30.0%
!!! AATTTGGTAGTTTTGTGGTA+TGG - chr1_4:9427036-9427055 Msa0148980:CDS 30.0%
! AAATGCAATTTTGAATTGGC+TGG - chr1_4:9427100-9427119 Msa0148980:CDS 30.0%
!!! AATTTTGAATTGGCTGGTTT+TGG - chr1_4:9427106-9427125 Msa0148980:CDS 30.0%
!!! ATTTTGAATTGGCTGGTTTT+GGG - chr1_4:9427107-9427126 Msa0148980:CDS 30.0%
GAATTTATGAGAAATCATGG+GGG - chr1_4:9427199-9427218 Msa0148980:intron 30.0%
GAGTGTGTTTATTCAAAAAC+TGG + chr1_4:9427349-9427368 None:intergenic 30.0%
!!! GGTGTACTTTTGATTTAGAA+TGG - chr1_4:9427475-9427494 Msa0148980:intron 30.0%
TTGTTGCAATTGTTCTTTGA+AGG + chr1_4:9427677-9427696 None:intergenic 30.0%
!!! GACATTTTTTTGTACCTGTT+AGG + chr1_4:9427765-9427784 None:intergenic 30.0%
!! TAAAGCTTTGTTGCATATGA+TGG - chr1_4:9427819-9427838 Msa0148980:CDS 30.0%
AAAAGCAGCAACATAATCAA+GGG + chr1_4:9427900-9427919 None:intergenic 30.0%
TAAAAGCAGCAACATAATCA+AGG + chr1_4:9427901-9427920 None:intergenic 30.0%
TGTTAGCTAATTGAACAGTT+GGG + chr1_4:9428085-9428104 None:intergenic 30.0%
ATGTTAGCTAATTGAACAGT+TGG + chr1_4:9428086-9428105 None:intergenic 30.0%
! TGACCTACTTTGAAAATCTT+AGG - chr1_4:9428200-9428219 Msa0148980:intron 30.0%
GTCCAATCAAACCTAAAAAA+TGG + chr1_4:9428256-9428275 None:intergenic 30.0%
! GTTTGATTGGACCTTTTTAA+AGG - chr1_4:9428264-9428283 Msa0148980:intron 30.0%
AAATATACTTCAGCCTTCAT+CGG + chr1_4:9428291-9428310 None:intergenic 30.0%
TTATACCAACAGAGAATGAA+AGG - chr1_4:9428490-9428509 Msa0148980:intron 30.0%
AGCATGAATTGAAACATGTA+AGG - chr1_4:9428544-9428563 Msa0148980:intron 30.0%
GCATGAATTGAAACATGTAA+GGG - chr1_4:9428545-9428564 Msa0148980:intron 30.0%
TAAAAGGAGATGAATCATGT+GGG + chr1_4:9428613-9428632 None:intergenic 30.0%
ATAAAAGGAGATGAATCATG+TGG + chr1_4:9428614-9428633 None:intergenic 30.0%
TCATACATTATAGGGTTACA+AGG - chr1_4:9428639-9428658 Msa0148980:intron 30.0%
GTAATAACCACTAATCTTAG+GGG + chr1_4:9429168-9429187 None:intergenic 30.0%
GTGTAATAACCACTAATCTT+AGG + chr1_4:9429170-9429189 None:intergenic 30.0%
TGTGATTTCCTTAACAAGAA+GGG + chr1_4:9429198-9429217 None:intergenic 30.0%
ATGTGATTTCCTTAACAAGA+AGG + chr1_4:9429199-9429218 None:intergenic 30.0%
CTTAGTGAAGGTTATAGTAA+AGG - chr1_4:9429251-9429270 Msa0148980:CDS 30.0%
TAGTGAAGGTTATAGTAAAG+GGG - chr1_4:9429253-9429272 Msa0148980:CDS 30.0%
GCATTCAAAGTAAAGGATAT+TGG - chr1_4:9429496-9429515 Msa0148980:five_prime_UTR 30.0%
GGTGTAATTTCAGTAAAGAA+AGG - chr1_4:9429517-9429536 Msa0148980:five_prime_UTR 30.0%
ATGTAGCATTATACTAAAGC+AGG + chr1_4:9429715-9429734 None:intergenic 30.0%
TGTTTGTATAATATTGAGGG+GGG - chr1_4:9429822-9429841 Msa0148980:five_prime_UTR 30.0%
! GGTATTTGGAATGTATGTAA+AGG - chr1_4:9429925-9429944 Msa0148980:five_prime_UTR 30.0%
! GTGTGATGATGTGTATAAAG+TGG + chr1_4:9425611-9425630 None:intergenic 35.0%
TAGAATGTGGAGTAGAAAGA+AGG + chr1_4:9425690-9425709 None:intergenic 35.0%
AATGGAAGATGAAGAAGAAG+GGG + chr1_4:9425718-9425737 None:intergenic 35.0%
CAATGGAAGATGAAGAAGAA+GGG + chr1_4:9425719-9425738 None:intergenic 35.0%
ACAATGGAAGATGAAGAAGA+AGG + chr1_4:9425720-9425739 None:intergenic 35.0%
GAGAGAATATGACAAGACAA+TGG + chr1_4:9425736-9425755 None:intergenic 35.0%
!! TTTGTGTTGTTGGTTTGGTT+GGG + chr1_4:9425856-9425875 None:intergenic 35.0%
!!! TTTTGTGTTGTTGGTTTGGT+TGG + chr1_4:9425857-9425876 None:intergenic 35.0%
!! GATGTTTTGTGTTGTTGGTT+TGG + chr1_4:9425861-9425880 None:intergenic 35.0%
! ACCATGGTATTGAACTTGAA+GGG + chr1_4:9425938-9425957 None:intergenic 35.0%
! TACCATGGTATTGAACTTGA+AGG + chr1_4:9425939-9425958 None:intergenic 35.0%
AGGTACTAGGTAGCTATTAT+AGG + chr1_4:9425966-9425985 None:intergenic 35.0%
! GTGTTAGAAAACAAGGTACT+AGG + chr1_4:9425979-9425998 None:intergenic 35.0%
CAAACATACACACACTTGTT+TGG - chr1_4:9426002-9426021 Msa0148980:three_prime_UTR 35.0%
!!! CTTGTGAAAGATGTTGGTTT+TGG + chr1_4:9426054-9426073 None:intergenic 35.0%
! TGGTTTGGAGTTGGTTATTA+GGG + chr1_4:9426183-9426202 None:intergenic 35.0%
GCACGAGTTAAGTAATATGA+AGG - chr1_4:9426435-9426454 Msa0148980:CDS 35.0%
GACAACAACTGTTCATACAA+CGG + chr1_4:9426580-9426599 None:intergenic 35.0%
GTTGTATGAACAGTTGTTGT+CGG - chr1_4:9426579-9426598 Msa0148980:intron 35.0%
CAAAGAACTTGACCATTTCA+TGG - chr1_4:9426723-9426742 Msa0148980:intron 35.0%
!!! GTTTGTGGTTTTAGTCCTTT+TGG - chr1_4:9426880-9426899 Msa0148980:intron 35.0%
! TTTTTGGATGATTGCTCAAG+TGG - chr1_4:9427150-9427169 Msa0148980:intron 35.0%
! TTTTGGATGATTGCTCAAGT+GGG - chr1_4:9427151-9427170 Msa0148980:intron 35.0%
GTCTCTTGTAAGACTATACA+AGG - chr1_4:9427939-9427958 Msa0148980:intron 35.0%
GTTAGCTAATTGAACAGTTG+GGG + chr1_4:9428084-9428103 None:intergenic 35.0%
ATCTTCCAAGAATACAAGCA+GGG - chr1_4:9428138-9428157 Msa0148980:intron 35.0%
! AGGCCTAAGATTTTCAAAGT+AGG + chr1_4:9428206-9428225 None:intergenic 35.0%
ATGGGCCTATAAGAGATAAT+AGG + chr1_4:9428237-9428256 None:intergenic 35.0%
!!! CTCTTATAGGCCCATTTTTT+AGG - chr1_4:9428242-9428261 Msa0148980:intron 35.0%
!!! GCCCATTTTTTAGGTTTGAT+TGG - chr1_4:9428251-9428270 Msa0148980:intron 35.0%
CATTCTCTGTTGGTATAAGA+GGG + chr1_4:9428488-9428507 None:intergenic 35.0%
TCATTCTCTGTTGGTATAAG+AGG + chr1_4:9428489-9428508 None:intergenic 35.0%
GAAAATTGTGGACATAAGAG+AGG - chr1_4:9428663-9428682 Msa0148980:intron 35.0%
GTTAAACGTACTGTTGGATA+TGG + chr1_4:9428775-9428794 None:intergenic 35.0%
!! TGTATTATGTGCTTTTCAGG+AGG - chr1_4:9428963-9428982 Msa0148980:CDS 35.0%
GGTTTATCAATCAAAGGAAG+AGG - chr1_4:9429043-9429062 Msa0148980:CDS 35.0%
TCAATCAAAGGAAGAGGAAT+TGG - chr1_4:9429049-9429068 Msa0148980:CDS 35.0%
!! TTTTTAGGGAGACTTAGTGA+AGG - chr1_4:9429239-9429258 Msa0148980:CDS 35.0%
AAACAAAGAAGTCTGTTGAG+AGG - chr1_4:9429464-9429483 Msa0148980:exon 35.0%
AAGAGCAGCATTCAAAGTAA+AGG - chr1_4:9429489-9429508 Msa0148980:five_prime_UTR 35.0%
TACTTGCTTCAGATTAGCAT+TGG + chr1_4:9429625-9429644 None:intergenic 35.0%
! TAATCTGAAGCAAGTACAAC+AGG - chr1_4:9429629-9429648 Msa0148980:five_prime_UTR 35.0%
! TATAATATTGAGGGGGGTAT+AGG - chr1_4:9429828-9429847 Msa0148980:five_prime_UTR 35.0%
AGTAGAAAGAAGGAAAGGGA+GGG + chr1_4:9425680-9425699 None:intergenic 40.0%
GTGGAGTAGAAAGAAGGAAA+GGG + chr1_4:9425684-9425703 None:intergenic 40.0%
TGTGGAGTAGAAAGAAGGAA+AGG + chr1_4:9425685-9425704 None:intergenic 40.0%
! ACCCTTCAAGTTCAATACCA+TGG - chr1_4:9425934-9425953 Msa0148980:three_prime_UTR 40.0%
GCAACTCTTGTGAAAGATGT+TGG + chr1_4:9426060-9426079 None:intergenic 40.0%
TGGTCTGTGAAATGTTGGAT+TGG + chr1_4:9426082-9426101 None:intergenic 40.0%
!! TGGTTTGGTCTGTGAAATGT+TGG + chr1_4:9426087-9426106 None:intergenic 40.0%
! TTGGAGTTGGTTATTAGGGT+CGG + chr1_4:9426179-9426198 None:intergenic 40.0%
! GTGGTTTGGAGTTGGTTATT+AGG + chr1_4:9426184-9426203 None:intergenic 40.0%
GAATGGATACTTGATGTGCA+GGG - chr1_4:9427173-9427192 Msa0148980:intron 40.0%
TTTATGAGAAATCATGGGGG+TGG - chr1_4:9427202-9427221 Msa0148980:intron 40.0%
AAAGTACACCGCTCCTTATT+TGG + chr1_4:9427465-9427484 None:intergenic 40.0%
CAATCCTTACAAAGCCTAAC+AGG - chr1_4:9427748-9427767 Msa0148980:intron 40.0%
! TGTACCTGTTAGGCTTTGTA+AGG + chr1_4:9427755-9427774 None:intergenic 40.0%
TTGCAAAGTTGCAATGCATG+TGG + chr1_4:9427965-9427984 None:intergenic 40.0%
CATCTTCCAAGAATACAAGC+AGG - chr1_4:9428137-9428156 Msa0148980:intron 40.0%
TCTTCCAAGAATACAAGCAG+GGG - chr1_4:9428139-9428158 Msa0148980:intron 40.0%
! GCTGGCCTATTATCTCTTAT+AGG - chr1_4:9428229-9428248 Msa0148980:intron 40.0%
! CCTTCATCGGACCTTTAAAA+AGG + chr1_4:9428278-9428297 None:intergenic 40.0%
!! CCTTTTTAAAGGTCCGATGA+AGG - chr1_4:9428275-9428294 Msa0148980:intron 40.0%
!!! CTGTTCGATGGTAGTTTTGA+TGG - chr1_4:9428438-9428457 Msa0148980:intron 40.0%
!!! TTCGATGGTAGTTTTGATGG+CGG - chr1_4:9428441-9428460 Msa0148980:intron 40.0%
AGAGAATGAAAGGTCCCTAA+TGG - chr1_4:9428500-9428519 Msa0148980:intron 40.0%
TTGTCTTACACGCTCCATTA+GGG + chr1_4:9428517-9428536 None:intergenic 40.0%
GGGTTACAAGGAGAAAATTG+TGG - chr1_4:9428651-9428670 Msa0148980:intron 40.0%
TGACACAACTTCTGTCCTTA+AGG - chr1_4:9428723-9428742 Msa0148980:intron 40.0%
! CACATGGACTAATGTGCATT+GGG + chr1_4:9428885-9428904 None:intergenic 40.0%
! ACACATGGACTAATGTGCAT+TGG + chr1_4:9428886-9428905 None:intergenic 40.0%
ATGCACATTAGTCCATGTGT+TGG - chr1_4:9428886-9428905 Msa0148980:CDS 40.0%
TTCAGGAGGAAGATAAAGCA+AGG - chr1_4:9428977-9428996 Msa0148980:CDS 40.0%
TTCAAGACAGTAGAGGTTGA+AGG + chr1_4:9429084-9429103 None:intergenic 40.0%
TTTGCTCTTCAAGACAGTAG+AGG + chr1_4:9429091-9429110 None:intergenic 40.0%
TCTTGAAGAGCAAACGCAAA+AGG - chr1_4:9429097-9429116 Msa0148980:CDS 40.0%
GTACCAACACTACAGATTGA+AGG - chr1_4:9429293-9429312 Msa0148980:CDS 40.0%
GTGTCAAAACTAATCCCTGA+AGG - chr1_4:9429689-9429708 Msa0148980:five_prime_UTR 40.0%
TATACTAAAGCAGGCCTTCA+GGG + chr1_4:9429706-9429725 None:intergenic 40.0%
TTATACTAAAGCAGGCCTTC+AGG + chr1_4:9429707-9429726 None:intergenic 40.0%
AGAAGGGACGTTGTTGTGAT+CGG + chr1_4:9425656-9425675 None:intergenic 45.0%
GAGTAGAAAGAAGGAAAGGG+AGG + chr1_4:9425681-9425700 None:intergenic 45.0%
AAGATGAAGAAGAAGGGGAG+GGG + chr1_4:9425713-9425732 None:intergenic 45.0%
GAAGATGAAGAAGAAGGGGA+GGG + chr1_4:9425714-9425733 None:intergenic 45.0%
! ATCAGGTTTGGAGTTAGGGT+CGG + chr1_4:9426155-9426174 None:intergenic 45.0%
! CGGAATCAGGTTTGGAGTTA+GGG + chr1_4:9426159-9426178 None:intergenic 45.0%
! TCGGAATCAGGTTTGGAGTT+AGG + chr1_4:9426160-9426179 None:intergenic 45.0%
ATTAGGGTCGGAATCAGGTT+TGG + chr1_4:9426167-9426186 None:intergenic 45.0%
TGGTTATTAGGGTCGGAATC+AGG + chr1_4:9426172-9426191 None:intergenic 45.0%
! AGTTAGGTGTGGTTTGGAGT+TGG + chr1_4:9426192-9426211 None:intergenic 45.0%
AACTCCAAACCACACCTAAC+TGG - chr1_4:9426191-9426210 Msa0148980:three_prime_UTR 45.0%
ATAGCGTTGTTGAGCCAGTT+AGG + chr1_4:9426208-9426227 None:intergenic 45.0%
! GTTGTTGTTGTCGGTGTAGT+GGG + chr1_4:9426239-9426258 None:intergenic 45.0%
! TGTTGTTGTTGTCGGTGTAG+TGG + chr1_4:9426240-9426259 None:intergenic 45.0%
CGATTACTTCACCGTGTTGA+CGG + chr1_4:9426387-9426406 None:intergenic 45.0%
AGTAATCGACAACGTCACCA+TGG - chr1_4:9426399-9426418 Msa0148980:CDS 45.0%
TAACTCGTGCTCTACTTCTC+CGG + chr1_4:9426425-9426444 None:intergenic 45.0%
AAGGATAACATCGACGGTGA+TGG - chr1_4:9426454-9426473 Msa0148980:CDS 45.0%
GCTAACTGAGCATCAATCCT+CGG + chr1_4:9426649-9426668 None:intergenic 45.0%
GTTAGCACAGTCTCAGAATG+TGG - chr1_4:9426663-9426682 Msa0148980:intron 45.0%
! ACCACCAAACGCAGAGTATT+TGG + chr1_4:9426692-9426711 None:intergenic 45.0%
! AAATACTCTGCGTTTGGTGG+TGG - chr1_4:9426691-9426710 Msa0148980:intron 45.0%
GATGATTGCTCAAGTGGGAA+TGG - chr1_4:9427156-9427175 Msa0148980:intron 45.0%
GGAATGGATACTTGATGTGC+AGG - chr1_4:9427172-9427191 Msa0148980:intron 45.0%
GTGTGACTGCAACATCAAGA+AGG + chr1_4:9427635-9427654 None:intergenic 45.0%
CCATTACAGCTTCCATTGCA+TGG + chr1_4:9427711-9427730 None:intergenic 45.0%
CCATGCAATGGAAGCTGTAA+TGG - chr1_4:9427708-9427727 Msa0148980:intron 45.0%
! TGGAAGCTGTAATGGCTTGT+TGG - chr1_4:9427716-9427735 Msa0148980:intron 45.0%
!! GGAAGCTGTAATGGCTTGTT+GGG - chr1_4:9427717-9427736 Msa0148980:intron 45.0%
! AGACTAGACAAGGCTTTGTG+AGG - chr1_4:9428169-9428188 Msa0148980:intron 45.0%
GAAAATCTTAGGCCTGAAGC+TGG - chr1_4:9428211-9428230 Msa0148980:intron 45.0%
AGAGATAATAGGCCAGCTTC+AGG + chr1_4:9428226-9428245 None:intergenic 45.0%
TTTCTCATCGCTGCATGAAC+AGG - chr1_4:9428342-9428361 Msa0148980:intron 45.0%
! TTTCACCTGGAGAAGGTACA+GGG - chr1_4:9428367-9428386 Msa0148980:intron 45.0%
GTCTGACGATGAAGATGAAC+AGG - chr1_4:9428398-9428417 Msa0148980:intron 45.0%
AGTGACGCAAATCTGTTCGA+TGG - chr1_4:9428426-9428445 Msa0148980:intron 45.0%
AGGGACCTTTCATTCTCTGT+TGG + chr1_4:9428498-9428517 None:intergenic 45.0%
CTTGTCTTACACGCTCCATT+AGG + chr1_4:9428518-9428537 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG - chr1_4:9428688-9428707 Msa0148980:intron 45.0%
! TTTTACGCAAGAGACGAGCT+GGG - chr1_4:9428689-9428708 Msa0148980:intron 45.0%
CAACTTCTGTCCTTAAGGCT+TGG - chr1_4:9428728-9428747 Msa0148980:intron 45.0%
TACTGTTGGATATGGCCACT+TGG + chr1_4:9428767-9428786 None:intergenic 45.0%
CTTTCTGTGATGCCAACACA+TGG + chr1_4:9428901-9428920 None:intergenic 45.0%
GGAGGAAGATAAAGCAAGGT+TGG - chr1_4:9428981-9429000 Msa0148980:CDS 45.0%
!! AGATAAAGCAAGGTTGGTGC+AGG - chr1_4:9428987-9429006 Msa0148980:CDS 45.0%
CCACTAATCTTAGGGGAGTT+TGG + chr1_4:9429161-9429180 None:intergenic 45.0%
CCAAACTCCCCTAAGATTAG+TGG - chr1_4:9429158-9429177 Msa0148980:CDS 45.0%
ACGCCTTCAATCTGTAGTGT+TGG + chr1_4:9429299-9429318 None:intergenic 45.0%
TGACGATGATACGTAGACAC+TGG + chr1_4:9429403-9429422 None:intergenic 45.0%
GTGTCTGTGTCAATGCTTCA+TGG - chr1_4:9429428-9429447 Msa0148980:CDS 45.0%
GAAGGAAAGGGAGGGAAGAA+GGG + chr1_4:9425672-9425691 None:intergenic 50.0%
AGAAGGAAAGGGAGGGAAGA+AGG + chr1_4:9425673-9425692 None:intergenic 50.0%
GGAAGATGAAGAAGAAGGGG+AGG + chr1_4:9425715-9425734 None:intergenic 50.0%
GTCGGGTGAGTCTGGTAATA+TGG + chr1_4:9426137-9426156 None:intergenic 50.0%
! TCAGGTTTGGAGTTAGGGTC+GGG + chr1_4:9426154-9426173 None:intergenic 50.0%
TGAGCCAGTTAGGTGTGGTT+TGG + chr1_4:9426198-9426217 None:intergenic 50.0%
GTTGTTGAGCCAGTTAGGTG+TGG + chr1_4:9426203-9426222 None:intergenic 50.0%
GACGTTACCAACGACACTGA+CGG - chr1_4:9426274-9426293 Msa0148980:three_prime_UTR 50.0%
ACCAACGACACTGACGGTAA+CGG - chr1_4:9426280-9426299 Msa0148980:three_prime_UTR 50.0%
!! CGGTGTCGGAAGTTTGTTGA+AGG + chr1_4:9426324-9426343 None:intergenic 50.0%
TCGATTCTCCACCGTCAACA+CGG - chr1_4:9426373-9426392 Msa0148980:exon 50.0%
! TTACTTCACCGTGTTGACGG+TGG + chr1_4:9426384-9426403 None:intergenic 50.0%
!! AACATCGACGGTGATGGACT+TGG - chr1_4:9426460-9426479 Msa0148980:CDS 50.0%
!! ACATCGACGGTGATGGACTT+GGG - chr1_4:9426461-9426480 Msa0148980:CDS 50.0%
!! TGGATTGGTGAACTGGCAGA+TGG - chr1_4:9426525-9426544 Msa0148980:intron 50.0%
! GGATTGGTGAACTGGCAGAT+GGG - chr1_4:9426526-9426545 Msa0148980:intron 50.0%
GATTGGTGAACTGGCAGATG+GGG - chr1_4:9426527-9426546 Msa0148980:intron 50.0%
ACAGTTGTTGTCGGCACATG+TGG - chr1_4:9426588-9426607 Msa0148980:intron 50.0%
GTGTTTGAGGATAGCAACGC+CGG - chr1_4:9426612-9426631 Msa0148980:intron 50.0%
ATCCTCGGTAACTGATCCAC+CGG + chr1_4:9426634-9426653 None:intergenic 50.0%
AGCACAGTCTCAGAATGTGG+TGG - chr1_4:9426666-9426685 Msa0148980:intron 50.0%
GTGGCCAAATACTCTGCGTT+TGG - chr1_4:9426685-9426704 Msa0148980:intron 50.0%
GCCAAATACTCTGCGTTTGG+TGG - chr1_4:9426688-9426707 Msa0148980:intron 50.0%
ATGAGAAATCATGGGGGTGG+AGG - chr1_4:9427205-9427224 Msa0148980:intron 50.0%
TGAGAAATCATGGGGGTGGA+GGG - chr1_4:9427206-9427225 Msa0148980:intron 50.0%
GGGCAGGATTAGACTAGACA+AGG - chr1_4:9428159-9428178 Msa0148980:intron 50.0%
GCATGAACAGGAGTTTCACC+TGG - chr1_4:9428354-9428373 Msa0148980:intron 50.0%
ACAGGAGTTTCACCTGGAGA+AGG - chr1_4:9428360-9428379 Msa0148980:intron 50.0%
! GTTTCACCTGGAGAAGGTAC+AGG - chr1_4:9428366-9428385 Msa0148980:intron 50.0%
! TTCACCTGGAGAAGGTACAG+GGG - chr1_4:9428368-9428387 Msa0148980:intron 50.0%
!!! TGGTAGTTTTGATGGCGGTG+CGG - chr1_4:9428446-9428465 Msa0148980:intron 50.0%
GGTGCGGATAACATGGGATT+TGG - chr1_4:9428462-9428481 Msa0148980:intron 50.0%
AGGACAGAAGTTGTGTCACC+AGG + chr1_4:9428721-9428740 None:intergenic 50.0%
CTTCTGTCCTTAAGGCTTGG+TGG - chr1_4:9428731-9428750 Msa0148980:intron 50.0%
GTGATTGCCACCAAGCCTTA+AGG + chr1_4:9428741-9428760 None:intergenic 50.0%
GGTGGCAATCACATTCCAAG+TGG - chr1_4:9428749-9428768 Msa0148980:intron 50.0%
CACTGACGCCCTTCTTGTTA+AGG - chr1_4:9429187-9429206 Msa0148980:CDS 50.0%
AGAAGGGGAGGGGTAGAATG+TGG + chr1_4:9425703-9425722 None:intergenic 55.0%
!! TGTCGGTGTAGTGGGTACGA+AGG + chr1_4:9426231-9426250 None:intergenic 55.0%
TCCGTTACCGTCAGTGTCGT+TGG + chr1_4:9426284-9426303 None:intergenic 55.0%
! CCATTGACCGGTGGTTTGCA+CGG + chr1_4:9426344-9426363 None:intergenic 55.0%
ATCGACAACGTCACCATGGC+CGG - chr1_4:9426403-9426422 Msa0148980:CDS 55.0%
!! CATCGACGGTGATGGACTTG+GGG - chr1_4:9426462-9426481 Msa0148980:CDS 55.0%
!! ATCGACGGTGATGGACTTGG+GGG - chr1_4:9426463-9426482 Msa0148980:CDS 55.0%
!! GAGGAGCTGGATTGGTGAAC+TGG - chr1_4:9426518-9426537 Msa0148980:CDS 55.0%
GAGGTGGAAGGCGGAGATAA+TGG - chr1_4:9426549-9426568 Msa0148980:intron 55.0%
TTTGAGGATAGCAACGCCGG+TGG - chr1_4:9426615-9426634 Msa0148980:intron 55.0%
ACATGTCCGCGTCCATGCAA+TGG - chr1_4:9427696-9427715 Msa0148980:intron 55.0%
CAGCTTCCATTGCATGGACG+CGG + chr1_4:9427705-9427724 None:intergenic 55.0%
CCTGCCCCTGCTTGTATTCT+TGG + chr1_4:9428146-9428165 None:intergenic 55.0%
CCAAGAATACAAGCAGGGGC+AGG - chr1_4:9428143-9428162 Msa0148980:intron 55.0%
!! TGATGGCGGTGCGGATAACA+TGG - chr1_4:9428455-9428474 Msa0148980:intron 55.0%
! GATGGCGGTGCGGATAACAT+GGG - chr1_4:9428456-9428475 Msa0148980:intron 55.0%
AGACGAGCTGGGAAACTTCC+TGG - chr1_4:9428700-9428719 Msa0148980:intron 55.0%
!! GCAAGGTTGGTGCAGGAAAC+TGG - chr1_4:9428994-9429013 Msa0148980:CDS 55.0%
GAGTTAGGGTCGGGTGAGTC+TGG + chr1_4:9426145-9426164 None:intergenic 60.0%
TCCGACACCGTGCAAACCAC+CGG - chr1_4:9426334-9426353 Msa0148980:three_prime_UTR 60.0%
! ACCGGTGGTTTGCACGGTGT+CGG + chr1_4:9426338-9426357 None:intergenic 60.0%
CCGTGCAAACCACCGGTCAA+TGG - chr1_4:9426341-9426360 Msa0148980:three_prime_UTR 60.0%
! CCACCGGTCAATGGCTTGCA+CGG - chr1_4:9426350-9426369 Msa0148980:three_prime_UTR 60.0%
CGACCGTGCAAGCCATTGAC+CGG + chr1_4:9426356-9426375 None:intergenic 60.0%
GTGCTCTACTTCTCCGGCCA+TGG + chr1_4:9426419-9426438 None:intergenic 60.0%
!! TCGACGGTGATGGACTTGGG+GGG - chr1_4:9426464-9426483 Msa0148980:CDS 60.0%
TGGACTTGGGGGGAAGAGTG+AGG - chr1_4:9426474-9426493 Msa0148980:CDS 60.0%
ACTTGGGGGGAAGAGTGAGG+TGG - chr1_4:9426477-9426496 Msa0148980:CDS 60.0%
! AAGAGTGAGGTGGCGGTGGA+TGG - chr1_4:9426487-9426506 Msa0148980:CDS 60.0%
AGACGGAGGAGGAGCTGGAT+TGG - chr1_4:9426510-9426529 Msa0148980:CDS 60.0%
TGGTGAACTGGCAGATGGGG+AGG - chr1_4:9426530-9426549 Msa0148980:intron 60.0%
TGAACTGGCAGATGGGGAGG+TGG - chr1_4:9426533-9426552 Msa0148980:intron 60.0%
CGGCACATGTGGCGTGTTTG+AGG - chr1_4:9426599-9426618 Msa0148980:intron 60.0%
GTTGCCCCTGTACCTTCTCC+AGG + chr1_4:9428375-9428394 None:intergenic 60.0%
CCGTGCAAGCCATTGACCGG+TGG + chr1_4:9426353-9426372 None:intergenic 65.0%
TGGGGGGAAGAGTGAGGTGG+CGG - chr1_4:9426480-9426499 Msa0148980:CDS 65.0%
! GAGGTGGCGGTGGATGGAGA+CGG - chr1_4:9426493-9426512 Msa0148980:CDS 65.0%
GATGGAGACGGAGGAGGAGC+TGG - chr1_4:9426505-9426524 Msa0148980:CDS 65.0%
CTGGCAGATGGGGAGGTGGA+AGG - chr1_4:9426537-9426556 Msa0148980:intron 65.0%
GCAGATGGGGAGGTGGAAGG+CGG - chr1_4:9426540-9426559 Msa0148980:intron 65.0%
CGCCGGTGGATCAGTTACCG+AGG - chr1_4:9426629-9426648 Msa0148980:intron 65.0%
! GGGGAAGAGTGAGGTGGCGG+TGG - chr1_4:9426483-9426502 Msa0148980:CDS 70.0%
GTGGCGGTGGATGGAGACGG+AGG - chr1_4:9426496-9426515 Msa0148980:CDS 70.0%
GCGGTGGATGGAGACGGAGG+AGG - chr1_4:9426499-9426518 Msa0148980:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 9425559 9429964 9425559 ID=Msa0148980;Name=Msa0148980
chr1_4 mRNA 9425559 9429964 9425559 ID=Msa0148980-mRNA-1;Parent=Msa0148980;Name=Msa0148980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=484|1|1|1|1|1|5|833|433
chr1_4 exon 9425559 9426541 9425559 ID=Msa0148980-mRNA-1:exon:3990;Parent=Msa0148980-mRNA-1
chr1_4 exon 9426740 9426871 9426740 ID=Msa0148980-mRNA-1:exon:3989;Parent=Msa0148980-mRNA-1
chr1_4 exon 9426963 9427159 9426963 ID=Msa0148980-mRNA-1:exon:3988;Parent=Msa0148980-mRNA-1
chr1_4 exon 9427754 9427874 9427754 ID=Msa0148980-mRNA-1:exon:3987;Parent=Msa0148980-mRNA-1
chr1_4 exon 9428779 9429964 9428779 ID=Msa0148980-mRNA-1:exon:3986;Parent=Msa0148980-mRNA-1
chr1_4 five_prime_UTR 9429481 9429964 9429481 ID=Msa0148980-mRNA-1:five_prime_utr;Parent=Msa0148980-mRNA-1
chr1_4 CDS 9428779 9429480 9428779 ID=Msa0148980-mRNA-1:cds;Parent=Msa0148980-mRNA-1
chr1_4 CDS 9427754 9427874 9427754 ID=Msa0148980-mRNA-1:cds;Parent=Msa0148980-mRNA-1
chr1_4 CDS 9426963 9427159 9426963 ID=Msa0148980-mRNA-1:cds;Parent=Msa0148980-mRNA-1
chr1_4 CDS 9426740 9426871 9426740 ID=Msa0148980-mRNA-1:cds;Parent=Msa0148980-mRNA-1
chr1_4 CDS 9426392 9426541 9426392 ID=Msa0148980-mRNA-1:cds;Parent=Msa0148980-mRNA-1
chr1_4 three_prime_UTR 9425559 9426391 9425559 ID=Msa0148980-mRNA-1:three_prime_utr;Parent=Msa0148980-mRNA-1
Gene Sequence

>Msa0148980

ATGGCTTACCAAAACCAACATCTTTCACAAGAGTTGCCAATCCAACATTTCACAGACCAAACCAACAACAATAACAACAACTCATTTCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAATAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCTATCCTTCGTACCCACTACACCGACAACAACAACAACAACAATAACAACGACGTTACCAACGACACTGACGGTAACGGAGCTTCTAATTTTCTAAACCTTCAACAAACTTCCGACACCGTGCAAACCACCGGTCAATGGCTTGCACGGTCGATTCTCCACCGTCAACACGGTGAAGTAATCGACAACGTCACCATGGCCGGAGAAGTAGAGCACGAGTTAAGTAATATGAAGGATAACATCGACGGTGATGGACTTGGGGGGAAGAGTGAGGTGGCGGTGGATGGAGACGGAGGAGGAGCTGGATTGGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATAATGGCACATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACGCCGGTGGATCAGTTACCGAGGATTGATGCTCAGTTAGCACAGTCTCAGAATGTGGTGGCCAAATACTCTGCGTTTGGTGGTGGAGTAGATGACAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGCGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGCCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGACGATGAAGATGAACAGGTAGATAGTGACGCAAATCTGTTCGATGGTAGTTTTGATGGCGGTGCGGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCCCTAATGGAGCGTGTAAGACAAGAGCTTAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACCTCTACTGTCTTGAAGAGCAAACGCAAAAGGTCTCAAAACTAG
Protein sequence

>Msa0148980

MAYQNQHLSQELPIQHFTDQTNNNNNNSFRSILPDSPDPNSKPDSDPNNQLQTTPNWLNNAILRTHYTDNNNNNNNNDVTNDTDGNGASNFLNLQQTSDTVQTTGQWLARSILHRQHGEVIDNVTMAGEVEHELSNMKDNIDGDGLGGKSEVAVDGDGGGAGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGGGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN*