AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0739610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0739610 MtrunA17_Chr5g0434671 97.590 83 2 0 1 83 273 355 5.94e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0739610 AT1G66330.1 78.049 82 18 0 2 83 256 337 1.20e-37 130
Msa0739610 AT1G66330.2 78.049 82 18 0 2 83 256 337 1.20e-37 130

Find 60 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAGCCATTTCAATTATA+AGG 0.230040 5_1:-57955490 Msa0739600:intron
CTTTGATGTTAAGATCTTTC+AGG 0.236151 5_1:+57954951 Msa0739610:three_prime_UTR
AGAACCACAAATTCCTTTCT+TGG 0.277347 5_1:+57954504 Msa0739610:CDS
GAGCCCTTATCTCTGAAAAT+AGG 0.324687 5_1:-57954432 Msa0739600:intron
ATGATGAAAATATGTCAATT+AGG 0.338790 5_1:-57955060 Msa0739600:intron
GAAGCTAAACTAACCTCTTC+AGG 0.339327 5_1:-57954739 Msa0739600:intron
GAACCACAAATTCCTTTCTT+GGG 0.342712 5_1:+57954505 Msa0739610:CDS
TAGAAATAAAGTAATCAGTT+AGG 0.351951 5_1:-57955188 Msa0739600:intron
CTTTCAGAAAATAATGTTAG+AGG 0.367250 5_1:+57954456 Msa0739610:five_prime_UTR
GTATCAATATGAATATGAAT+AGG 0.372624 5_1:+57955360 Msa0739610:three_prime_UTR
AGTATCTATAGGAAGCTTAC+TGG 0.373975 5_1:+57954668 Msa0739610:intron
TTAAAACCTTATAATTGAAA+TGG 0.397894 5_1:+57955484 Msa0739610:three_prime_UTR
AAACTTGCTCTTTATTTGGC+AGG 0.398813 5_1:-57955263 Msa0739600:intron
TGAGATGATAATATGCTAGA+TGG 0.401775 5_1:-57955408 Msa0739600:intron
ATAGGAAGCTTACTGGAGTA+TGG 0.402823 5_1:+57954675 Msa0739610:intron
ATGATGTTCATTAGTATGAT+TGG 0.421181 5_1:+57955012 Msa0739610:three_prime_UTR
TAATGAACATCATGGCATAT+AGG 0.421991 5_1:-57955002 Msa0739600:intron
TATCAATATGAATATGAATA+GGG 0.424118 5_1:+57955361 Msa0739610:three_prime_UTR
AGTTTAAAATATGTGAGTAT+AGG 0.430080 5_1:+57955281 Msa0739610:three_prime_UTR
CTCTTGGAAACGCAGGGATG+GGG 0.434985 5_1:+57955616 Msa0739610:three_prime_UTR
AGAACGGATTACTGCTCTTC+AGG 0.442816 5_1:+57954539 Msa0739610:CDS
TAATTCAATATTGCATAACT+TGG 0.445305 5_1:-57955137 Msa0739600:intron
ACTCTTGGAAACGCAGGGAT+GGG 0.451755 5_1:+57955615 Msa0739610:three_prime_UTR
CCTTACCTAGTACCGACATC+AGG 0.452369 5_1:-57954925 Msa0739600:intron
CGAATCATGCTTGAAAAGAA+TGG 0.454171 5_1:+57954480 Msa0739610:exon
GTTCCCCTGATGTCGGTACT+AGG 0.468688 5_1:+57954920 Msa0739610:CDS
TTTCCAAGAGTCCACATAGA+TGG 0.475502 5_1:-57955603 Msa0739600:intron
GCACCATCTATGTGGACTCT+TGG 0.478002 5_1:+57955600 Msa0739610:three_prime_UTR
GTCAAAACATTCTCAAATGC+AGG 0.479624 5_1:+57955094 Msa0739610:three_prime_UTR
GACTCTTGGAAACGCAGGGA+TGG 0.489246 5_1:+57955614 Msa0739610:three_prime_UTR
ATCCCCAAGAAAGGAATTTG+TGG 0.496739 5_1:-57954508 Msa0739600:intron
ATCATGGCATATAGGTGCAT+TGG 0.497875 5_1:-57954994 Msa0739600:intron
TGCCGTCACATCCCCAAGAA+AGG 0.509048 5_1:-57954517 Msa0739600:CDS
AACCACAAATTCCTTTCTTG+GGG 0.522590 5_1:+57954506 Msa0739610:CDS
CCTGATGTCGGTACTAGGTA+AGG 0.524636 5_1:+57954925 Msa0739610:CDS
TTCCTTTCTTGGGGATGTGA+CGG 0.526745 5_1:+57954515 Msa0739610:CDS
TCATGATATATATGAACGTA+TGG 0.526920 5_1:-57955312 Msa0739600:intron
CTGAAAGATCTTAACATCAA+AGG 0.545637 5_1:-57954950 Msa0739600:intron
TCTTGGAAACGCAGGGATGG+GGG 0.560998 5_1:+57955617 Msa0739610:three_prime_UTR
GTTTACCGTCCATTGCATCA+AGG 0.562296 5_1:-57954867 Msa0739600:intron
TAACATTCATAGAGATCACT+TGG 0.564621 5_1:+57955233 Msa0739610:three_prime_UTR
AATCATACTAATGAACATCA+TGG 0.567621 5_1:-57955010 Msa0739600:intron
TCTTATAGACCTTGATGCAA+TGG 0.567724 5_1:+57954858 Msa0739610:CDS
TCTGCACTTTCTGAAGCAGA+TGG 0.572909 5_1:+57954700 Msa0739610:CDS
TGATTACACTGATCCTGAAG+AGG 0.574801 5_1:+57954726 Msa0739610:CDS
ACGAGCTTTAGCGAAGGCAC+TGG 0.575429 5_1:+57955572 Msa0739610:three_prime_UTR
ATGTGGACTCTTGGAAACGC+AGG 0.578590 5_1:+57955609 Msa0739610:three_prime_UTR
AGTTTAAAGAGAGAGTACAA+AGG 0.584773 5_1:-57955462 Msa0739600:intron
CTTACCTAGTACCGACATCA+GGG 0.585311 5_1:-57954924 Msa0739600:intron
GAAGTTTACATGCACGGACA+AGG 0.601592 5_1:-57955546 Msa0739600:intron
TGGCAGCAGCACCATCTATG+TGG 0.613054 5_1:+57955592 Msa0739610:three_prime_UTR
TGTTCTAGTTCCCCTGATGT+CGG 0.616561 5_1:+57954913 Msa0739610:CDS
CGTCTAGAAGTTTACATGCA+CGG 0.618894 5_1:-57955552 Msa0739600:intron
TTGGGGATGTGACGGCAGAA+CGG 0.619552 5_1:+57954523 Msa0739610:CDS
TGTGGACTCTTGGAAACGCA+GGG 0.628626 5_1:+57955610 Msa0739610:three_prime_UTR
TTCTAGACGAGCTTTAGCGA+AGG 0.635480 5_1:+57955566 Msa0739610:three_prime_UTR
ATAGACCTTGATGCAATGGA+CGG 0.648829 5_1:+57954862 Msa0739610:CDS
CGGACAAGGAAAATAAGCAA+AGG 0.681106 5_1:-57955532 Msa0739600:intron
AATAGTACAAACTCATATCG+CGG 0.690998 5_1:-57955037 Msa0739600:intron
TTACCTAGTACCGACATCAG+GGG 0.714696 5_1:-57954923 Msa0739600:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTCTAAAAAATATG+TGG + chr5_1:57955200-57955219 Msa0739610:three_prime_UTR 15.0%
!! TATCAATATGAATATGAATA+GGG + chr5_1:57955361-57955380 Msa0739610:three_prime_UTR 15.0%
!! TTAAAACCTTATAATTGAAA+TGG + chr5_1:57955484-57955503 Msa0739610:three_prime_UTR 15.0%
!!! CTTTATTTCTAAAAAATATG+TGG + chr5_1:57955200-57955219 Msa0739610:three_prime_UTR 15.0%
!! TATCAATATGAATATGAATA+GGG + chr5_1:57955361-57955380 Msa0739610:three_prime_UTR 15.0%
!! TTAAAACCTTATAATTGAAA+TGG + chr5_1:57955484-57955503 Msa0739610:three_prime_UTR 15.0%
!!! ACTAAGATTTTAGTATCTAT+AGG + chr5_1:57954657-57954676 Msa0739610:intron 20.0%
!! ATGATGAAAATATGTCAATT+AGG - chr5_1:57955063-57955082 Msa0739600:intron 20.0%
!! TAATTCAATATTGCATAACT+TGG - chr5_1:57955140-57955159 Msa0739600:intron 20.0%
!! TAGAAATAAAGTAATCAGTT+AGG - chr5_1:57955191-57955210 Msa0739600:intron 20.0%
!!! TTTTAAACTTGCTCTTTATT+TGG - chr5_1:57955270-57955289 Msa0739600:intron 20.0%
!!! AGTTTAAAATATGTGAGTAT+AGG + chr5_1:57955281-57955300 Msa0739610:three_prime_UTR 20.0%
!! GTATCAATATGAATATGAAT+AGG + chr5_1:57955360-57955379 Msa0739610:three_prime_UTR 20.0%
!!! ACTAAGATTTTAGTATCTAT+AGG + chr5_1:57954657-57954676 Msa0739610:intron 20.0%
!! ATGATGAAAATATGTCAATT+AGG - chr5_1:57955063-57955082 Msa0739600:intron 20.0%
!! TAATTCAATATTGCATAACT+TGG - chr5_1:57955140-57955159 Msa0739600:intron 20.0%
!! TAGAAATAAAGTAATCAGTT+AGG - chr5_1:57955191-57955210 Msa0739600:intron 20.0%
!!! TTTTAAACTTGCTCTTTATT+TGG - chr5_1:57955270-57955289 Msa0739600:intron 20.0%
!!! AGTTTAAAATATGTGAGTAT+AGG + chr5_1:57955281-57955300 Msa0739610:three_prime_UTR 20.0%
!! GTATCAATATGAATATGAAT+AGG + chr5_1:57955360-57955379 Msa0739610:three_prime_UTR 20.0%
! CTTTCAGAAAATAATGTTAG+AGG + chr5_1:57954456-57954475 Msa0739610:five_prime_UTR 25.0%
!! TTCTTTTCCATTTTCTTTTC+AGG + chr5_1:57954568-57954587 Msa0739610:intron 25.0%
! ATGAATGCATAAATAGTGAT+AGG - chr5_1:57954790-57954809 Msa0739600:intron 25.0%
! AATCATACTAATGAACATCA+TGG - chr5_1:57955013-57955032 Msa0739600:intron 25.0%
! ATGATGTTCATTAGTATGAT+TGG + chr5_1:57955012-57955031 Msa0739610:three_prime_UTR 25.0%
!! ATTTTCATCATTCTTTGACA+AGG + chr5_1:57955072-57955091 Msa0739610:three_prime_UTR 25.0%
! TCATGATATATATGAACGTA+TGG - chr5_1:57955315-57955334 Msa0739600:intron 25.0%
! CTTTCAGAAAATAATGTTAG+AGG + chr5_1:57954456-57954475 Msa0739610:five_prime_UTR 25.0%
!! TTCTTTTCCATTTTCTTTTC+AGG + chr5_1:57954568-57954587 Msa0739610:intron 25.0%
! ATGAATGCATAAATAGTGAT+AGG - chr5_1:57954790-57954809 Msa0739600:intron 25.0%
! AATCATACTAATGAACATCA+TGG - chr5_1:57955013-57955032 Msa0739600:intron 25.0%
! ATGATGTTCATTAGTATGAT+TGG + chr5_1:57955012-57955031 Msa0739610:three_prime_UTR 25.0%
!! ATTTTCATCATTCTTTGACA+AGG + chr5_1:57955072-57955091 Msa0739610:three_prime_UTR 25.0%
! TCATGATATATATGAACGTA+TGG - chr5_1:57955315-57955334 Msa0739600:intron 25.0%
AACAGAACCTGAAAAGAAAA+TGG - chr5_1:57954578-57954597 Msa0739600:CDS 30.0%
TCCTGATTCATACTGAATTA+GGG - chr5_1:57954618-57954637 Msa0739600:intron 30.0%
TTCCTGATTCATACTGAATT+AGG - chr5_1:57954619-57954638 Msa0739600:intron 30.0%
GTCGATCATAAAACTTTATC+AGG - chr5_1:57954764-57954783 Msa0739600:intron 30.0%
CTGAAAGATCTTAACATCAA+AGG - chr5_1:57954953-57954972 Msa0739600:intron 30.0%
CTTTGATGTTAAGATCTTTC+AGG + chr5_1:57954951-57954970 Msa0739610:three_prime_UTR 30.0%
TAATGAACATCATGGCATAT+AGG - chr5_1:57955005-57955024 Msa0739600:intron 30.0%
AATAGTACAAACTCATATCG+CGG - chr5_1:57955040-57955059 Msa0739600:intron 30.0%
TAACATTCATAGAGATCACT+TGG + chr5_1:57955233-57955252 Msa0739610:three_prime_UTR 30.0%
TGAGATGATAATATGCTAGA+TGG - chr5_1:57955411-57955430 Msa0739600:intron 30.0%
! AGTTTAAAGAGAGAGTACAA+AGG - chr5_1:57955465-57955484 Msa0739600:intron 30.0%
AGCTAGCCATTTCAATTATA+AGG - chr5_1:57955493-57955512 Msa0739600:intron 30.0%
AACAGAACCTGAAAAGAAAA+TGG - chr5_1:57954578-57954597 Msa0739600:CDS 30.0%
TCCTGATTCATACTGAATTA+GGG - chr5_1:57954618-57954637 Msa0739600:intron 30.0%
TTCCTGATTCATACTGAATT+AGG - chr5_1:57954619-57954638 Msa0739600:intron 30.0%
GTCGATCATAAAACTTTATC+AGG - chr5_1:57954764-57954783 Msa0739600:intron 30.0%
CTGAAAGATCTTAACATCAA+AGG - chr5_1:57954953-57954972 Msa0739600:intron 30.0%
CTTTGATGTTAAGATCTTTC+AGG + chr5_1:57954951-57954970 Msa0739610:three_prime_UTR 30.0%
TAATGAACATCATGGCATAT+AGG - chr5_1:57955005-57955024 Msa0739600:intron 30.0%
AATAGTACAAACTCATATCG+CGG - chr5_1:57955040-57955059 Msa0739600:intron 30.0%
TAACATTCATAGAGATCACT+TGG + chr5_1:57955233-57955252 Msa0739610:three_prime_UTR 30.0%
TGAGATGATAATATGCTAGA+TGG - chr5_1:57955411-57955430 Msa0739600:intron 30.0%
! AGTTTAAAGAGAGAGTACAA+AGG - chr5_1:57955465-57955484 Msa0739600:intron 30.0%
AGCTAGCCATTTCAATTATA+AGG - chr5_1:57955493-57955512 Msa0739600:intron 30.0%
CGAATCATGCTTGAAAAGAA+TGG + chr5_1:57954480-57954499 Msa0739610:exon 35.0%
AGAACCACAAATTCCTTTCT+TGG + chr5_1:57954504-57954523 Msa0739610:CDS 35.0%
GAACCACAAATTCCTTTCTT+GGG + chr5_1:57954505-57954524 Msa0739610:CDS 35.0%
AACCACAAATTCCTTTCTTG+GGG + chr5_1:57954506-57954525 Msa0739610:CDS 35.0%
CCTGATTCATACTGAATTAG+GGG - chr5_1:57954617-57954636 Msa0739600:intron 35.0%
AGTATCTATAGGAAGCTTAC+TGG + chr5_1:57954668-57954687 Msa0739610:intron 35.0%
TCTTATAGACCTTGATGCAA+TGG + chr5_1:57954858-57954877 Msa0739610:CDS 35.0%
GTCAAAACATTCTCAAATGC+AGG + chr5_1:57955094-57955113 Msa0739610:three_prime_UTR 35.0%
! AAACTTGCTCTTTATTTGGC+AGG - chr5_1:57955266-57955285 Msa0739600:intron 35.0%
CGAATCATGCTTGAAAAGAA+TGG + chr5_1:57954480-57954499 Msa0739610:exon 35.0%
AGAACCACAAATTCCTTTCT+TGG + chr5_1:57954504-57954523 Msa0739610:CDS 35.0%
GAACCACAAATTCCTTTCTT+GGG + chr5_1:57954505-57954524 Msa0739610:CDS 35.0%
AACCACAAATTCCTTTCTTG+GGG + chr5_1:57954506-57954525 Msa0739610:CDS 35.0%
CCTGATTCATACTGAATTAG+GGG - chr5_1:57954617-57954636 Msa0739600:intron 35.0%
AGTATCTATAGGAAGCTTAC+TGG + chr5_1:57954668-57954687 Msa0739610:intron 35.0%
TCTTATAGACCTTGATGCAA+TGG + chr5_1:57954858-57954877 Msa0739610:CDS 35.0%
GTCAAAACATTCTCAAATGC+AGG + chr5_1:57955094-57955113 Msa0739610:three_prime_UTR 35.0%
! AAACTTGCTCTTTATTTGGC+AGG - chr5_1:57955266-57955285 Msa0739600:intron 35.0%
! GAGCCCTTATCTCTGAAAAT+AGG - chr5_1:57954435-57954454 Msa0739600:intron 40.0%
ATCCCCAAGAAAGGAATTTG+TGG - chr5_1:57954511-57954530 Msa0739600:CDS 40.0%
CCCCTAATTCAGTATGAATC+AGG + chr5_1:57954614-57954633 Msa0739610:intron 40.0%
ATAGGAAGCTTACTGGAGTA+TGG + chr5_1:57954675-57954694 Msa0739610:intron 40.0%
TGATTACACTGATCCTGAAG+AGG + chr5_1:57954726-57954745 Msa0739610:CDS 40.0%
GAAGCTAAACTAACCTCTTC+AGG - chr5_1:57954742-57954761 Msa0739600:intron 40.0%
ATAGACCTTGATGCAATGGA+CGG + chr5_1:57954862-57954881 Msa0739610:CDS 40.0%
ATCATGGCATATAGGTGCAT+TGG - chr5_1:57954997-57955016 Msa0739600:intron 40.0%
CGGACAAGGAAAATAAGCAA+AGG - chr5_1:57955535-57955554 Msa0739600:intron 40.0%
CGTCTAGAAGTTTACATGCA+CGG - chr5_1:57955555-57955574 Msa0739600:intron 40.0%
TTTCCAAGAGTCCACATAGA+TGG - chr5_1:57955606-57955625 Msa0739600:intron 40.0%
! GAGCCCTTATCTCTGAAAAT+AGG - chr5_1:57954435-57954454 Msa0739600:intron 40.0%
ATCCCCAAGAAAGGAATTTG+TGG - chr5_1:57954511-57954530 Msa0739600:CDS 40.0%
CCCCTAATTCAGTATGAATC+AGG + chr5_1:57954614-57954633 Msa0739610:intron 40.0%
ATAGGAAGCTTACTGGAGTA+TGG + chr5_1:57954675-57954694 Msa0739610:intron 40.0%
TGATTACACTGATCCTGAAG+AGG + chr5_1:57954726-57954745 Msa0739610:CDS 40.0%
GAAGCTAAACTAACCTCTTC+AGG - chr5_1:57954742-57954761 Msa0739600:intron 40.0%
ATAGACCTTGATGCAATGGA+CGG + chr5_1:57954862-57954881 Msa0739610:CDS 40.0%
ATCATGGCATATAGGTGCAT+TGG - chr5_1:57954997-57955016 Msa0739600:intron 40.0%
CGGACAAGGAAAATAAGCAA+AGG - chr5_1:57955535-57955554 Msa0739600:intron 40.0%
CGTCTAGAAGTTTACATGCA+CGG - chr5_1:57955555-57955574 Msa0739600:intron 40.0%
TTTCCAAGAGTCCACATAGA+TGG - chr5_1:57955606-57955625 Msa0739600:intron 40.0%
TTCCTTTCTTGGGGATGTGA+CGG + chr5_1:57954515-57954534 Msa0739610:CDS 45.0%
!! AGAACGGATTACTGCTCTTC+AGG + chr5_1:57954539-57954558 Msa0739610:CDS 45.0%
!! TCTGCACTTTCTGAAGCAGA+TGG + chr5_1:57954700-57954719 Msa0739610:CDS 45.0%
GTTTACCGTCCATTGCATCA+AGG - chr5_1:57954870-57954889 Msa0739600:intron 45.0%
!! TGTTCTAGTTCCCCTGATGT+CGG + chr5_1:57954913-57954932 Msa0739610:CDS 45.0%
!! TTACCTAGTACCGACATCAG+GGG - chr5_1:57954926-57954945 Msa0739600:intron 45.0%
!! CTTACCTAGTACCGACATCA+GGG - chr5_1:57954927-57954946 Msa0739600:intron 45.0%
GAAGTTTACATGCACGGACA+AGG - chr5_1:57955549-57955568 Msa0739600:intron 45.0%
! TTCTAGACGAGCTTTAGCGA+AGG + chr5_1:57955566-57955585 Msa0739610:three_prime_UTR 45.0%
TTCCTTTCTTGGGGATGTGA+CGG + chr5_1:57954515-57954534 Msa0739610:CDS 45.0%
!! AGAACGGATTACTGCTCTTC+AGG + chr5_1:57954539-57954558 Msa0739610:CDS 45.0%
!! TCTGCACTTTCTGAAGCAGA+TGG + chr5_1:57954700-57954719 Msa0739610:CDS 45.0%
GTTTACCGTCCATTGCATCA+AGG - chr5_1:57954870-57954889 Msa0739600:intron 45.0%
!! TGTTCTAGTTCCCCTGATGT+CGG + chr5_1:57954913-57954932 Msa0739610:CDS 45.0%
!! TTACCTAGTACCGACATCAG+GGG - chr5_1:57954926-57954945 Msa0739600:intron 45.0%
!! CTTACCTAGTACCGACATCA+GGG - chr5_1:57954927-57954946 Msa0739600:intron 45.0%
GAAGTTTACATGCACGGACA+AGG - chr5_1:57955549-57955568 Msa0739600:intron 45.0%
! TTCTAGACGAGCTTTAGCGA+AGG + chr5_1:57955566-57955585 Msa0739610:three_prime_UTR 45.0%
!! CCTTACCTAGTACCGACATC+AGG - chr5_1:57954928-57954947 Msa0739600:intron 50.0%
CCTGATGTCGGTACTAGGTA+AGG + chr5_1:57954925-57954944 Msa0739610:CDS 50.0%
GCACCATCTATGTGGACTCT+TGG + chr5_1:57955600-57955619 Msa0739610:three_prime_UTR 50.0%
ATGTGGACTCTTGGAAACGC+AGG + chr5_1:57955609-57955628 Msa0739610:three_prime_UTR 50.0%
TGTGGACTCTTGGAAACGCA+GGG + chr5_1:57955610-57955629 Msa0739610:three_prime_UTR 50.0%
ACTCTTGGAAACGCAGGGAT+GGG + chr5_1:57955615-57955634 Msa0739610:three_prime_UTR 50.0%
!! CCTTACCTAGTACCGACATC+AGG - chr5_1:57954928-57954947 Msa0739600:intron 50.0%
CCTGATGTCGGTACTAGGTA+AGG + chr5_1:57954925-57954944 Msa0739610:CDS 50.0%
GCACCATCTATGTGGACTCT+TGG + chr5_1:57955600-57955619 Msa0739610:three_prime_UTR 50.0%
ATGTGGACTCTTGGAAACGC+AGG + chr5_1:57955609-57955628 Msa0739610:three_prime_UTR 50.0%
TGTGGACTCTTGGAAACGCA+GGG + chr5_1:57955610-57955629 Msa0739610:three_prime_UTR 50.0%
ACTCTTGGAAACGCAGGGAT+GGG + chr5_1:57955615-57955634 Msa0739610:three_prime_UTR 50.0%
TGCCGTCACATCCCCAAGAA+AGG - chr5_1:57954520-57954539 Msa0739600:CDS 55.0%
TTGGGGATGTGACGGCAGAA+CGG + chr5_1:57954523-57954542 Msa0739610:CDS 55.0%
GTTCCCCTGATGTCGGTACT+AGG + chr5_1:57954920-57954939 Msa0739610:CDS 55.0%
! ACGAGCTTTAGCGAAGGCAC+TGG + chr5_1:57955572-57955591 Msa0739610:three_prime_UTR 55.0%
TGGCAGCAGCACCATCTATG+TGG + chr5_1:57955592-57955611 Msa0739610:three_prime_UTR 55.0%
GACTCTTGGAAACGCAGGGA+TGG + chr5_1:57955614-57955633 Msa0739610:three_prime_UTR 55.0%
CTCTTGGAAACGCAGGGATG+GGG + chr5_1:57955616-57955635 Msa0739610:three_prime_UTR 55.0%
TCTTGGAAACGCAGGGATGG+GGG + chr5_1:57955617-57955636 Msa0739610:three_prime_UTR 55.0%
TGCCGTCACATCCCCAAGAA+AGG - chr5_1:57954520-57954539 Msa0739600:CDS 55.0%
TTGGGGATGTGACGGCAGAA+CGG + chr5_1:57954523-57954542 Msa0739610:CDS 55.0%
GTTCCCCTGATGTCGGTACT+AGG + chr5_1:57954920-57954939 Msa0739610:CDS 55.0%
! ACGAGCTTTAGCGAAGGCAC+TGG + chr5_1:57955572-57955591 Msa0739610:three_prime_UTR 55.0%
TGGCAGCAGCACCATCTATG+TGG + chr5_1:57955592-57955611 Msa0739610:three_prime_UTR 55.0%
GACTCTTGGAAACGCAGGGA+TGG + chr5_1:57955614-57955633 Msa0739610:three_prime_UTR 55.0%
CTCTTGGAAACGCAGGGATG+GGG + chr5_1:57955616-57955635 Msa0739610:three_prime_UTR 55.0%
TCTTGGAAACGCAGGGATGG+GGG + chr5_1:57955617-57955636 Msa0739610:three_prime_UTR 55.0%
!! CGCAGGGATGGGGGCATTAC+AGG + chr5_1:57955626-57955645 Msa0739610:three_prime_UTR 65.0%
!! CGCAGGGATGGGGGCATTAC+AGG + chr5_1:57955626-57955645 Msa0739610:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 57954431 57955652 57954431 ID=Msa0739610;Name=Msa0739610
chr5_1 mRNA 57954431 57955652 57954431 ID=Msa0739610-mRNA-1;Parent=Msa0739610;Name=Msa0739610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55|1|1|1|1|1|3|707|83
chr5_1 exon 57954431 57954560 57954431 ID=Msa0739610-mRNA-1:exon:16466;Parent=Msa0739610-mRNA-1
chr5_1 exon 57954679 57954747 57954679 ID=Msa0739610-mRNA-1:exon:16467;Parent=Msa0739610-mRNA-1
chr5_1 exon 57954838 57955652 57954838 ID=Msa0739610-mRNA-1:exon:16468;Parent=Msa0739610-mRNA-1
chr5_1 five_prime_UTR 57954431 57954485 57954431 ID=Msa0739610-mRNA-1:five_prime_utr;Parent=Msa0739610-mRNA-1
chr5_1 CDS 57954486 57954560 57954486 ID=Msa0739610-mRNA-1:cds;Parent=Msa0739610-mRNA-1
chr5_1 CDS 57954679 57954747 57954679 ID=Msa0739610-mRNA-1:cds;Parent=Msa0739610-mRNA-1
chr5_1 CDS 57954838 57954945 57954838 ID=Msa0739610-mRNA-1:cds;Parent=Msa0739610-mRNA-1
chr5_1 three_prime_UTR 57954946 57955652 57954946 ID=Msa0739610-mRNA-1:three_prime_utr;Parent=Msa0739610-mRNA-1
Gene Sequence

>Msa0739610

ATGCTTGAAAAGAATGGAAGAACCACAAATTCCTTTCTTGGGGATGTGACGGCAGAACGGATTACTGCTCTTCAGGAAGCTTACTGGAGTATGGCATCTGCACTTTCTGAAGCAGATGGAATTGATTACACTGATCCTGAAGAGCTTGAGTTGTTAATCACAACTCTTATAGACCTTGATGCAATGGACGGTAAACAAAGTGTATCTTTGTTAGCAGAGTGTTCTAGTTCCCCTGATGTCGGTACTAGGTAA

Protein sequence

>Msa0739610

MLEKNGRTTNSFLGDVTAERITALQEAYWSMASALSEADGIDYTDPEELELLITTLIDLDAMDGKQSVSLLAECSSSPDVGTR*