AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100520 MtrunA17_Chr1g0149651 94.989 439 10 3 1 430 1 436 0.0 853
Msa0100520 MtrunA17_Chr3g0137241 66.667 438 75 9 1 432 1 373 0.0 547
Msa0100520 MtrunA17_Chr2g0305101 82.331 266 43 2 167 429 90 354 3.50e-165 469
Msa0100520 MtrunA17_Chr4g0065241 82.213 253 43 2 167 417 66 318 1.06e-155 444
Msa0100520 MtrunA17_Chr5g0398181 70.566 265 72 2 172 430 28 292 1.13e-129 376
Msa0100520 MtrunA17_Chr1g0192791 35.600 250 130 8 172 414 20 245 4.51e-31 120
Msa0100520 MtrunA17_Chr2g0289201 31.148 244 143 3 172 414 118 337 3.72e-30 120
Msa0100520 MtrunA17_Chr5g0413201 34.553 246 134 5 172 414 73 294 9.90e-28 112
Msa0100520 MtrunA17_Chr1g0151961 33.333 246 138 6 172 414 120 342 1.88e-27 112
Msa0100520 MtrunA17_Chr5g0439391 31.429 245 134 5 174 414 49 263 5.38e-23 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100520 AT5G25220.2 64.773 440 124 8 1 430 1 419 0.0 529
Msa0100520 AT5G25220.1 64.692 439 124 8 1 429 1 418 0.0 528
Msa0100520 AT5G11060.1 74.622 331 58 5 106 429 71 382 3.40e-172 488
Msa0100520 AT4G32040.2 55.172 435 134 9 1 430 1 379 4.10e-152 436
Msa0100520 AT4G32040.1 55.046 436 135 9 1 431 1 380 4.36e-152 436
Msa0100520 AT1G62990.1 65.614 285 94 3 148 429 7 290 2.82e-131 380
Msa0100520 AT1G70510.1 35.433 254 133 9 165 414 63 289 7.02e-32 124
Msa0100520 AT1G70510.2 34.252 254 140 8 165 414 63 293 2.83e-30 119
Msa0100520 AT1G23380.1 35.458 251 123 8 172 414 86 305 4.79e-29 116
Msa0100520 AT4G08150.1 34.387 253 129 7 172 414 135 360 1.08e-27 114
Msa0100520 AT1G23380.2 35.178 253 123 9 172 414 86 307 3.52e-27 111
Msa0100520 AT1G62360.1 33.200 250 132 5 172 414 122 343 2.49e-26 110

Find 289 sgRNAs with CRISPR-Local

Find 588 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTGTTCACATGCTTTC+TGG -0.006406 1_3:+6986530 Msa0100520:five_prime_UTR
AAAACATTGAATTAGGATTT+AGG 0.147164 1_3:-6982990 Msa0100510:intron
TCTAACCTTACAATCAATTT+TGG 0.151672 1_3:-6985936 None:intergenic
CCCAATGCACTATCTAAAAT+TGG 0.153303 1_3:+6983164 Msa0100520:five_prime_UTR
TACTATATGCTAAAACAAAT+TGG 0.156743 1_3:+6991483 Msa0100520:three_prime_UTR
CTGCAAAGGCCTAAAATTAA+TGG 0.204882 1_3:-6987095 None:intergenic
TAGTATAATGCTACATAATT+AGG 0.212748 1_3:+6991456 Msa0100520:three_prime_UTR
ATCTTTCAACAGCCAGCTTA+TGG 0.217155 1_3:-6986440 None:intergenic
GTATAAGAAAACATTGAATT+AGG 0.231104 1_3:-6982997 Msa0100510:intron
ATTACAATTTAATACCTATT+TGG 0.240018 1_3:-6984234 Msa0100510:intron
TGCCCTGCTGCTACTAATTC+TGG 0.243034 1_3:-6986778 None:intergenic
GTGGTTTGGAGTTGGTTATT+AGG 0.252230 1_3:-6987962 None:intergenic
TTGTTCTTTAAATTGGTATT+TGG 0.257518 1_3:+6991646 Msa0100520:three_prime_UTR
ACCACCAAACGCAGAGTATT+TGG 0.262834 1_3:-6988470 None:intergenic
GTTTGGTTAGCAAAGGTTAT+TGG 0.263371 1_3:-6983193 Msa0100510:three_prime_UTR
AGGTACTAGGTAGCTATTAT+AGG 0.274059 1_3:-6987744 None:intergenic
TCACATGCTTTCTGGGTTGC+TGG 0.274177 1_3:+6986538 Msa0100520:five_prime_UTR
GTGTAATAACCACTAATCTT+AGG 0.277516 1_3:-6990904 None:intergenic
AAACATTGAATTAGGATTTA+GGG 0.281831 1_3:-6982989 Msa0100510:intron
AGAACGTGTATCAGGATTTC+AGG 0.283695 1_3:-6983247 Msa0100510:CDS
TTCTTGTTCACATGCTTTCT+GGG 0.284934 1_3:+6986531 Msa0100520:five_prime_UTR
TCGGAATCAGGTTTGGAGTT+AGG 0.291079 1_3:-6987938 None:intergenic
ATCATCACACATACTTTGTT+TGG 0.293011 1_3:+6987404 Msa0100520:five_prime_UTR
TGGTTTGGAGTTGGTTATTA+GGG 0.296401 1_3:-6987961 None:intergenic
GGAAATGAAGATAAAATATT+GGG 0.297720 1_3:-6987571 None:intergenic
CTTGTCTTACACGCTCCATT+AGG 0.305466 1_3:-6990252 None:intergenic
TGAGTTGTTGTTATTGTTGT+TGG 0.307531 1_3:-6987885 None:intergenic
AGGAAATGAAGATAAAATAT+TGG 0.312300 1_3:-6987572 None:intergenic
TTATACTAAAGCAGGCCTTC+AGG 0.312512 1_3:-6991441 None:intergenic
AAACCATTTGTACAACAAAT+TGG 0.312918 1_3:-6991686 None:intergenic
AGAAGGAAAGGGAGGGAAGA+AGG 0.318735 1_3:-6987453 None:intergenic
CCACTAATCTTAGGGGAGTT+TGG 0.319284 1_3:-6990895 None:intergenic
GTCGGGTGAGTCTGGTAATA+TGG 0.319705 1_3:-6987915 None:intergenic
CAAACATACACACACTTGTT+TGG 0.322398 1_3:+6987783 Msa0100520:five_prime_UTR
AACTAAAGCAAATTAATAAC+TGG 0.324917 1_3:+6990759 Msa0100520:CDS
CACCTCCAAAATTGATTGTA+AGG 0.325112 1_3:+6985931 Msa0100520:five_prime_UTR
CACTGACGCCCTTCTTGTTA+AGG 0.338297 1_3:+6990924 Msa0100520:three_prime_UTR
CGGAATCAGGTTTGGAGTTA+GGG 0.345170 1_3:-6987937 None:intergenic
TTTGGTTAGCAAAGGTTATT+GGG 0.345902 1_3:-6983192 Msa0100510:three_prime_UTR
GTTAAACGTACTGTTGGATA+TGG 0.348322 1_3:-6990509 None:intergenic
TCAATCAAAGGAAGAGGAAT+TGG 0.349434 1_3:+6990786 Msa0100520:CDS
GGGGAAGAGTGAGGTGGCGG+TGG 0.352138 1_3:+6988264 Msa0100520:CDS
GCAAGGTTGGTGCAGGAAAC+TGG 0.359590 1_3:+6990731 Msa0100520:CDS
GTATTTGGAATGTATGTAAA+GGG 0.360759 1_3:+6991661 Msa0100520:three_prime_UTR
TTAGTGAAGGTTATAGTAAA+GGG 0.362730 1_3:+6990989 Msa0100520:three_prime_UTR
GAAGGAAAGGGAGGGAAGAA+GGG 0.362993 1_3:-6987452 None:intergenic
TGTTGTTATTGTTGTTGGTT+TGG 0.365581 1_3:-6987880 None:intergenic
ACCGCATGCACCGTCGAGTT+TGG 0.367274 1_3:+6983309 Msa0100520:five_prime_UTR
CAATCCTTACAAAGCCTAAC+AGG 0.372024 1_3:+6989519 Msa0100520:CDS
GAGAATGAAGAACGTGTATC+AGG 0.373815 1_3:-6983255 Msa0100510:CDS
TGTTGCCCCTGTACCTTCTC+CGG 0.374819 1_3:-6990110 None:intergenic
TCATTCTCTGTTGGTATAAG+AGG 0.376610 1_3:-6990223 None:intergenic
CAAAGAACTTGACCATTTCA+TGG 0.380421 1_3:+6988504 Msa0100520:CDS
TGTAATAACCACTAATCTTA+GGG 0.381221 1_3:-6990903 None:intergenic
ATATTCTACCGTCCATTCTC+TGG 0.381230 1_3:+6987210 Msa0100520:five_prime_UTR
TTAGAAACCCTTTGTTCAAA+AGG 0.384884 1_3:+6987244 Msa0100520:five_prime_UTR
TCTTTCAACAGCCAGCTTAT+GGG 0.385206 1_3:-6986439 None:intergenic
ACCGTCGAGTTTGGCCTCCT+TGG 0.387172 1_3:+6983318 Msa0100520:five_prime_UTR
AGACGAGCTGGGAAACTTCC+TGG 0.389865 1_3:+6990437 Msa0100520:CDS
AAGAGTGAGGTGGCGGTGGA+TGG 0.389997 1_3:+6988268 Msa0100520:CDS
GGTACCTGTTAGGCTTTGTA+AGG 0.392039 1_3:-6989523 None:intergenic
GCAGTGATTCTCAAGGTGTT+TGG 0.403351 1_3:-6986561 None:intergenic
AAATACTCTGCGTTTGGTGG+TGG 0.404646 1_3:+6988472 Msa0100520:CDS
AGTGAAAGTTGATTGCAATA+TGG 0.409219 1_3:+6983100 Msa0100520:five_prime_UTR
AACTCCAAACCACACCTAAC+TGG 0.409860 1_3:+6987972 Msa0100520:CDS
TGGTTATTAGGGTCGGAATC+AGG 0.411326 1_3:-6987950 None:intergenic
ATTCTTGCGTTGTGTCGTTA+AGG 0.411338 1_3:-6982958 Msa0100510:intron
GTGTCTGTGTCAATGCTTCA+TGG 0.412831 1_3:+6991165 Msa0100520:three_prime_UTR
GCGTAAACCTTGAAAATTGT+TGG 0.412997 1_3:-6987293 None:intergenic
GATGGAGACGGAGGAGGAGC+TGG 0.415977 1_3:+6988286 Msa0100520:CDS
GGTGCGGATAACATGGGATT+TGG 0.416313 1_3:+6990199 Msa0100520:CDS
CTTGTGAAAGATGTTGGTTT+TGG 0.416399 1_3:-6987832 None:intergenic
CAATGGAAGATGAAGAAGAA+GGG 0.419065 1_3:-6987498 None:intergenic
TTTATGTTTGTATAATATTG+AGG 0.421159 1_3:+6991555 Msa0100520:three_prime_UTR
TTGTCTTACACGCTCCATTA+GGG 0.421646 1_3:-6990251 None:intergenic
TAATAAACATTCATCTTAAG+AGG 0.423129 1_3:+6991287 Msa0100520:three_prime_UTR
TCAAATAAGTGTCGTAGAAA+AGG 0.424424 1_3:-6986960 None:intergenic
GAGGAGCTGGATTGGTGAAC+TGG 0.424541 1_3:+6988299 Msa0100520:CDS
GAGTTAGGGTCGGGTGAGTC+TGG 0.425434 1_3:-6987923 None:intergenic
TGACACAACTTCTGTCCTTA+AGG 0.425689 1_3:+6990460 Msa0100520:CDS
TGAGCCAGTTAGGTGTGGTT+TGG 0.429844 1_3:-6987976 None:intergenic
GCACCAGAATTAGTAGCAGC+AGG 0.431991 1_3:+6986775 Msa0100520:five_prime_UTR
CGATTACTTCACCGTGTTGA+CGG 0.433544 1_3:-6988165 None:intergenic
CTTAGTGAAGGTTATAGTAA+AGG 0.438469 1_3:+6990988 Msa0100520:three_prime_UTR
CGGTGTCGGAAGTTTGTTGA+AGG 0.438867 1_3:-6988102 None:intergenic
ACTATATGCTAAAACAAATT+GGG 0.439403 1_3:+6991484 Msa0100520:three_prime_UTR
GTCTGACGACGAAGATGAAC+AGG 0.441640 1_3:+6990135 Msa0100520:CDS
AGCAGCAGAGCAAGAGGGTA+TGG 0.443609 1_3:+6986810 Msa0100520:five_prime_UTR
AAAGAGCAAAGTAAAACATT+TGG 0.443619 1_3:+6983407 Msa0100520:five_prime_UTR
GAGGTGGAAGGCGGAGATAA+TGG 0.444829 1_3:+6988330 Msa0100520:CDS
TTCTAATGGTTCCTCCCTAC+CGG 0.447320 1_3:+6985902 Msa0100520:five_prime_UTR
TATACTAAAGCAGGCCTTCA+GGG 0.448190 1_3:-6991440 None:intergenic
ATAACCTTTGCTAACCAAAC+GGG 0.448290 1_3:+6983196 Msa0100520:five_prime_UTR
AACATCGACGGTGATGGACT+TGG 0.449142 1_3:+6988241 Msa0100520:CDS
TGGTTTGGTCTGTGAAATGT+TGG 0.450755 1_3:-6987865 None:intergenic
AAACTCAGGGAACCCATTCA+TGG 0.451036 1_3:+6983858 Msa0100520:intron
GGCTGTTGAAAGATATTGAT+TGG 0.451579 1_3:+6986449 Msa0100520:five_prime_UTR
TTGTTGCAATTGTTCTTTGA+AGG 0.451938 1_3:-6989445 None:intergenic
AGAGAATGAAAGGTCCCTAA+TGG 0.452095 1_3:+6990237 Msa0100520:CDS
ACATCGACGGTGATGGACTT+GGG 0.452431 1_3:+6988242 Msa0100520:CDS
ATTAGGGTCGGAATCAGGTT+TGG 0.452477 1_3:-6987945 None:intergenic
CCAAACTCCCCTAAGATTAG+TGG 0.452857 1_3:+6990895 Msa0100520:three_prime_UTR
AAACTAGGCCAGAGTTCTCT+TGG 0.455485 1_3:-6983451 Msa0100510:intron
CGGCACATGTGGCGTGTTTG+AGG 0.457717 1_3:+6988380 Msa0100520:CDS
TTTGTGTTGTTGGTTTGGTT+GGG 0.459054 1_3:-6987634 None:intergenic
TACTTGCTTCAGATTAGCAT+TGG 0.459631 1_3:-6991359 None:intergenic
GATGTAATTTCAGTAAAGAA+AGG 0.461024 1_3:+6991254 Msa0100520:three_prime_UTR
TGGAAGCTGTAATGGCTTGT+TGG 0.463261 1_3:+6989487 Msa0100520:CDS
CCAATGCACTATCTAAAATT+GGG 0.466522 1_3:+6983165 Msa0100520:five_prime_UTR
TTCAAGACAGTAGAAGTTGA+AGG 0.467671 1_3:-6990818 None:intergenic
GTGATTGCCACCAAGCCTTA+AGG 0.468131 1_3:-6990475 None:intergenic
TTATGTTTGTATAATATTGA+GGG 0.468226 1_3:+6991556 Msa0100520:three_prime_UTR
TAATCTGAAGCAAGTACAAC+AGG 0.468598 1_3:+6991366 Msa0100520:three_prime_UTR
AATAACCTTTGCTAACCAAA+CGG 0.468829 1_3:+6983195 Msa0100520:five_prime_UTR
ATAGCGTTGTTGAGCCAGTT+AGG 0.469554 1_3:-6987986 None:intergenic
GCCTCAGGATTCCCATAAGC+TGG 0.469733 1_3:+6986428 Msa0100520:intron
GGGAGAGGAAATAACCCGTT+TGG 0.470141 1_3:-6983210 Msa0100510:three_prime_UTR
AAAGGAAGACTATTGAGATA+TGG 0.470392 1_3:+6984187 Msa0100520:five_prime_UTR
AAAGGAGGCATCGGCGCTCA+AGG 0.472271 1_3:-6983284 Msa0100510:CDS
TTGGAGTTGGTTATTAGGGT+CGG 0.474556 1_3:-6987957 None:intergenic
AATGTGATGGAGAACCAAAT+AGG 0.475483 1_3:+6984220 Msa0100520:five_prime_UTR
GTTGCCCCTGTACCTTCTCC+GGG 0.477220 1_3:-6990109 None:intergenic
GTGAAGTATTTAAACCCAAT+AGG 0.477977 1_3:-6986867 None:intergenic
CCATGCAATGGAAGCTGTAA+TGG 0.479971 1_3:+6989479 Msa0100520:CDS
AGGGACCTTTCATTCTCTGT+TGG 0.480001 1_3:-6990232 None:intergenic
GTTGTATGAACAGTTGTTGT+CGG 0.481534 1_3:+6988360 Msa0100520:CDS
GAGGCATCGGCGCTCAAGGG+AGG 0.481782 1_3:-6983280 Msa0100510:CDS
TTTCAGGATGAATGAAATGA+GGG 0.482262 1_3:-6983231 Msa0100510:exon
GGAAGCTGTAATGGCTTGTT+GGG 0.483636 1_3:+6989488 Msa0100520:CDS
GGTATTTGGAATGTATGTAA+AGG 0.484449 1_3:+6991660 Msa0100520:three_prime_UTR
TACCATGGTATTGAACTTGA+AGG 0.485015 1_3:-6987717 None:intergenic
ATGTAATTTCAGTAAAGAAA+GGG 0.485825 1_3:+6991255 Msa0100520:three_prime_UTR
GTTTCTCCATTGTTGAAACT+AGG 0.486265 1_3:-6983466 Msa0100510:intron
CCGTGCAAACCACCGGTCAA+TGG 0.487735 1_3:+6988122 Msa0100520:CDS
AGTTAGGTGTGGTTTGGAGT+TGG 0.488164 1_3:-6987970 None:intergenic
TAACTCGTGTTCTACTTCTC+CGG 0.488870 1_3:-6988203 None:intergenic
AATACTCTGCGTTTGGTGGT+GGG 0.489512 1_3:+6988473 Msa0100520:CDS
GTTTCACCCGGAGAAGGTAC+AGG 0.491129 1_3:+6990103 Msa0100520:CDS
GCCAAATACTCTGCGTTTGG+TGG 0.493142 1_3:+6988469 Msa0100520:CDS
ATCAGGTTTGGAGTTAGGGT+CGG 0.495240 1_3:-6987933 None:intergenic
CTGGCAGATGGGGAGGTGGA+AGG 0.496148 1_3:+6988318 Msa0100520:CDS
TGTGGAGTAGAAAGAAGGAA+AGG 0.497010 1_3:-6987465 None:intergenic
AGGCATCGGCGCTCAAGGGA+GGG 0.497897 1_3:-6983279 Msa0100510:CDS
ATTAGTATAATATAATCATA+AGG 0.498053 1_3:-6991616 None:intergenic
TCTTGAAGAGCAAACGCAAA+AGG 0.498087 1_3:+6990834 Msa0100520:CDS
ATCGACAACGTTACCATGGC+CGG 0.498375 1_3:+6988184 Msa0100520:CDS
CCACCGGTCAATGGCTTGCA+CGG 0.499073 1_3:+6988131 Msa0100520:CDS
ACATAAAATTGTACAGGAAA+GGG 0.499672 1_3:-6983505 Msa0100510:intron
CATTCTCTGTTGGTATAAGA+GGG 0.502060 1_3:-6990222 None:intergenic
GTGTTCTACTTCTCCGGCCA+TGG 0.502170 1_3:-6988197 None:intergenic
GCGGTGGATGGAGACGGAGG+AGG 0.505247 1_3:+6988280 Msa0100520:CDS
TCCGTTACCGTCAGTGTCGT+TGG 0.506455 1_3:-6988062 None:intergenic
AAGAAGGGGAGGGTAGAATG+TGG 0.507183 1_3:-6987483 None:intergenic
CAACTTCTGTCCTTAAGGCT+TGG 0.507609 1_3:+6990465 Msa0100520:CDS
GTTGTTGTTGTCGGTGTAGT+GGG 0.509535 1_3:-6988017 None:intergenic
CTTCTGTCCTTAAGGCTTGG+TGG 0.509687 1_3:+6990468 Msa0100520:CDS
AGACGGAGGAGGAGCTGGAT+TGG 0.510601 1_3:+6988291 Msa0100520:CDS
AGATAAAGCAAGGTTGGTGC+AGG 0.511577 1_3:+6990724 Msa0100520:CDS
TGTAATCTACACAACGCCTC+TGG 0.511770 1_3:+6986497 Msa0100520:five_prime_UTR
TGTGATTTCCTTAACAAGAA+GGG 0.511966 1_3:-6990932 None:intergenic
CCATTACAGCTTCCATTGCA+TGG 0.512486 1_3:-6989479 None:intergenic
ATGTGATTTCCTTAACAAGA+AGG 0.513302 1_3:-6990933 None:intergenic
ACCGGTGGTTTGCACGGTGT+CGG 0.514390 1_3:-6988116 None:intergenic
TAGAATGTGGAGTAGAAAGA+AGG 0.514663 1_3:-6987470 None:intergenic
ATGTAGCATTATACTAAAGC+AGG 0.515908 1_3:-6991449 None:intergenic
ATACTCTGCGTTTGGTGGTG+GGG 0.517244 1_3:+6988474 Msa0100520:CDS
CACATAAAATTGTACAGGAA+AGG 0.518072 1_3:-6983506 Msa0100510:intron
TCAGGTTTGGAGTTAGGGTC+GGG 0.519463 1_3:-6987932 None:intergenic
CATCGACGGTGATGGACTTG+GGG 0.520169 1_3:+6988243 Msa0100520:CDS
AAGGAGGCATCGGCGCTCAA+GGG 0.522136 1_3:-6983283 Msa0100510:CDS
CGACGGTGCATGCGGTGGAA+AGG 0.524554 1_3:-6983302 Msa0100510:CDS
GTGGAGTAGAAAGAAGGAAA+GGG 0.524686 1_3:-6987464 None:intergenic
TGTTTATGCTTGGCAAGTTG+TGG 0.525169 1_3:-6987171 None:intergenic
TGAACTGGCAGATGGGGAGG+TGG 0.525868 1_3:+6988314 Msa0100520:CDS
GCAACTCTTGTGAAAGATGT+TGG 0.526828 1_3:-6987838 None:intergenic
GAAAATTGTGGACATAAGAG+AGG 0.527462 1_3:+6990400 Msa0100520:CDS
TGATGGTGGTGCGGATAACA+TGG 0.528693 1_3:+6990192 Msa0100520:CDS
ACACGAGTTAAGTAATATGA+AGG 0.529678 1_3:+6988216 Msa0100520:CDS
TGGATTGGTGAACTGGCAGA+TGG 0.530194 1_3:+6988306 Msa0100520:CDS
GTACCAACACTACAGATTGA+AGG 0.530230 1_3:+6991030 Msa0100520:three_prime_UTR
GTGGCCAAATACTCTGCGTT+TGG 0.531063 1_3:+6988466 Msa0100520:CDS
ATAACTGGTTTATCAATCAA+AGG 0.531319 1_3:+6990774 Msa0100520:CDS
TCATACATTATAGGGTTACA+AGG 0.531432 1_3:+6990376 Msa0100520:intron
GTGTGATGATGTGTATAAAG+TGG 0.532464 1_3:-6987391 None:intergenic
TGTTGTTGTTGTCGGTGTAG+TGG 0.532560 1_3:-6988018 None:intergenic
GAGGTGGCGGTGGATGGAGA+CGG 0.532603 1_3:+6988274 Msa0100520:CDS
TGGTCTGTGAAATGTTGGAT+TGG 0.533649 1_3:-6987860 None:intergenic
GATATTGATTGGAGACATCA+TGG 0.536690 1_3:+6986460 Msa0100520:five_prime_UTR
GAGTAGAAAGAAGGAAAGGG+AGG 0.538292 1_3:-6987461 None:intergenic
CCATTGACCGGTGGTTTGCA+CGG 0.539128 1_3:-6988122 None:intergenic
ATCGACGGTGATGGACTTGG+GGG 0.539928 1_3:+6988244 Msa0100520:CDS
GGAAGATGAAGAAGAAGGGG+AGG 0.540333 1_3:-6987494 None:intergenic
ACTTACAGTAGGTCCATGAA+TGG 0.540705 1_3:-6983871 Msa0100510:intron
AAGAGCAGCATTCAAAGTAA+AGG 0.541009 1_3:+6991226 Msa0100520:three_prime_UTR
CGACCGTGCAAGCCATTGAC+CGG 0.542113 1_3:-6988134 None:intergenic
AACATTGAATTAGGATTTAG+GGG 0.543828 1_3:-6982988 Msa0100510:intron
ACTTACACATAAAATTGTAC+AGG 0.544549 1_3:-6983511 Msa0100510:intron
GGAGGAAGATAAAGCAAGGT+TGG 0.544598 1_3:+6990718 Msa0100520:intron
GTTAGCAGCAGCAGAGCAAG+AGG 0.545401 1_3:+6986804 Msa0100520:five_prime_UTR
GATTGGTGAACTGGCAGATG+GGG 0.546447 1_3:+6988308 Msa0100520:CDS
ATAACCCGTTTGGTTAGCAA+AGG 0.547546 1_3:-6983200 Msa0100510:three_prime_UTR
TGGTGAACTGGCAGATGGGG+AGG 0.547939 1_3:+6988311 Msa0100520:CDS
ACAATGGAAGATGAAGAAGA+AGG 0.547992 1_3:-6987499 None:intergenic
TACTGTTGGATATGGCCACT+TGG 0.548498 1_3:-6990501 None:intergenic
AGAAGGGACGTTGTTGTGAT+CGG 0.549064 1_3:-6987436 None:intergenic
ATCCTCGGTAACTGATCCAC+CGG 0.551656 1_3:-6988412 None:intergenic
AAATGAGGTACTTTAGGCCA+AGG 0.555380 1_3:-6983335 Msa0100510:CDS
ATTTCAGGATGAATGAAATG+AGG 0.555945 1_3:-6983232 Msa0100510:exon
TATACTTGCAGTGATTCTCA+AGG 0.556258 1_3:-6986568 None:intergenic
AAGAGTTTCCAAGAGAACTC+TGG 0.560411 1_3:+6983443 Msa0100520:five_prime_UTR
GGATTGGTGAACTGGCAGAT+GGG 0.560565 1_3:+6988307 Msa0100520:CDS
TATTCTACCGTCCATTCTCT+GGG 0.561259 1_3:+6987211 Msa0100520:five_prime_UTR
CGGTGCATGCGGTGGAAAGG+AGG 0.561403 1_3:-6983299 Msa0100510:CDS
TCCGACACCGTGCAAACCAC+CGG 0.562776 1_3:+6988115 Msa0100520:CDS
AAGGATAACATCGACGGTGA+TGG 0.564146 1_3:+6988235 Msa0100520:CDS
ACATGTTCGTGTCCATGCAA+TGG 0.568400 1_3:+6989467 Msa0100520:CDS
ATGTTTGTATAATATTGAGG+GGG 0.568452 1_3:+6991558 Msa0100520:three_prime_UTR
GTGGCGGTGGATGGAGACGG+AGG 0.571035 1_3:+6988277 Msa0100520:CDS
TTATACCAACAGAGAATGAA+AGG 0.571808 1_3:+6990227 Msa0100520:CDS
GGTTTATCAATCAAAGGAAG+AGG 0.572061 1_3:+6990780 Msa0100520:CDS
AATGGAAGATGAAGAAGAAG+GGG 0.572890 1_3:-6987497 None:intergenic
GCAGATGGGGAGGTGGAAGG+CGG 0.573467 1_3:+6988321 Msa0100520:CDS
AAACTCGACGGTGCATGCGG+TGG 0.576168 1_3:-6983307 Msa0100510:CDS
TTCAGGAGGAAGATAAAGCA+AGG 0.577710 1_3:+6990714 Msa0100520:intron
TGTTCAGAGATGTTTATGCT+TGG 0.579643 1_3:-6987181 None:intergenic
ACCATGGTATTGAACTTGAA+GGG 0.581310 1_3:-6987716 None:intergenic
TATGTTTGTATAATATTGAG+GGG 0.583085 1_3:+6991557 Msa0100520:three_prime_UTR
GCCAAACTCGACGGTGCATG+CGG 0.585208 1_3:-6983310 Msa0100510:CDS
GTGTTAGAAAACAAGGTACT+AGG 0.585673 1_3:-6987757 None:intergenic
TTTCACCCGGAGAAGGTACA+GGG 0.589308 1_3:+6990104 Msa0100520:CDS
ACGCCTTCAATCTGTAGTGT+TGG 0.589859 1_3:-6991033 None:intergenic
GAAGATGAAGAAGAAGGGGA+GGG 0.590274 1_3:-6987493 None:intergenic
GATGAATGAAATGAGGGGAG+AGG 0.591020 1_3:-6983225 Msa0100510:exon
GACGTTACCAACGACACTGA+CGG 0.592534 1_3:+6988055 Msa0100520:CDS
AGGACAGAAGTTGTGTCACC+AGG 0.595424 1_3:-6990455 None:intergenic
TGTTTGTATAATATTGAGGG+GGG 0.595517 1_3:+6991559 Msa0100520:three_prime_UTR
GCCAAGGAGGCCAAACTCGA+CGG 0.596426 1_3:-6983319 Msa0100510:CDS
TGGAGGTGATAAAACCGGTA+GGG 0.597145 1_3:-6985916 None:intergenic
ATGCGGTGGAAAGGAGGCAT+CGG 0.598135 1_3:-6983293 Msa0100510:CDS
ACAGTTGTTGTCGGCACATG+TGG 0.599267 1_3:+6988369 Msa0100520:CDS
AGCAGAGCAAGAGGGTATGG+AGG 0.599498 1_3:+6986813 Msa0100520:five_prime_UTR
CTTACAGTAGGTCCATGAAT+GGG 0.602099 1_3:-6983870 Msa0100510:intron
GAGAAAATATGACAAGACAA+TGG 0.604823 1_3:-6987515 None:intergenic
GAACCATTAGAAAACTTCAA+AGG 0.605762 1_3:-6985891 None:intergenic
AGTAGAAAGAAGGAAAGGGA+GGG 0.605937 1_3:-6987460 None:intergenic
CCGTGCAAGCCATTGACCGG+TGG 0.606475 1_3:-6988131 None:intergenic
GTTGTTGAGCCAGTTAGGTG+TGG 0.606546 1_3:-6987981 None:intergenic
TAGTGAAGGTTATAGTAAAG+GGG 0.612085 1_3:+6990990 Msa0100520:three_prime_UTR
GTGTCAAAACTAATCCCTGA+AGG 0.612852 1_3:+6991426 Msa0100520:three_prime_UTR
CACCAGAATTAGTAGCAGCA+GGG 0.614276 1_3:+6986776 Msa0100520:five_prime_UTR
AAACAAAGAAGTCTGTTGAG+AGG 0.615706 1_3:+6991201 Msa0100520:three_prime_UTR
GGGTTACAAGGAGAAAATTG+TGG 0.616009 1_3:+6990388 Msa0100520:intron
GGGTGTATGTCTAAAACAGG+AGG 0.617730 1_3:-6983141 Msa0100510:three_prime_UTR
GTGTTTGAGGATAGCAACGC+CGG 0.619072 1_3:+6988393 Msa0100520:CDS
GCTAACTGAGCATCAATCCT+CGG 0.622785 1_3:-6988427 None:intergenic
GCTATTATAGGTTTATACCA+TGG 0.623092 1_3:-6987732 None:intergenic
ACAGGAGTTTCACCCGGAGA+AGG 0.623484 1_3:+6990097 Msa0100520:intron
GAAATGAAGATAAAATATTG+GGG 0.623884 1_3:-6987570 None:intergenic
ACCAACGACACTGACGGTAA+CGG 0.624558 1_3:+6988061 Msa0100520:CDS
TTCAGGATGAATGAAATGAG+GGG 0.624795 1_3:-6983230 Msa0100510:exon
TATTTGGAATGTATGTAAAG+GGG 0.624918 1_3:+6991662 Msa0100520:three_prime_UTR
TTGGAGGTGATAAAACCGGT+AGG 0.631851 1_3:-6985917 None:intergenic
TTACTTCACCGTGTTGACGG+TGG 0.635014 1_3:-6988162 None:intergenic
GACAACAACTGTTCATACAA+CGG 0.638324 1_3:-6988358 None:intergenic
CTCTGGCCTAGTTTCAACAA+TGG 0.640552 1_3:+6983460 Msa0100520:five_prime_UTR
ACCCTTCAAGTTCAATACCA+TGG 0.643322 1_3:+6987715 Msa0100520:five_prime_UTR
GTTAGCACAGTCTCAGAATG+TGG 0.643950 1_3:+6988444 Msa0100520:CDS
AGTGACGCAAATCTGTTCGA+TGG 0.645362 1_3:+6990163 Msa0100520:CDS
TTTGAGGATAGCAACGCCGG+TGG 0.647198 1_3:+6988396 Msa0100520:CDS
GCATGAACAGGAGTTTCACC+CGG 0.648191 1_3:+6990091 Msa0100520:intron
AATCTACACAACGCCTCTGG+AGG 0.650610 1_3:+6986500 Msa0100520:five_prime_UTR
GTAATAACCACTAATCTTAG+GGG 0.651167 1_3:-6990902 None:intergenic
TGACGATGATACGTAGACAC+TGG 0.656338 1_3:-6991137 None:intergenic
TTTGTGTGTGTTAGAAAACA+AGG 0.663445 1_3:-6987764 None:intergenic
AGGTGATAAAACCGGTAGGG+AGG 0.666279 1_3:-6985913 None:intergenic
TCGATTCTCCACCGTCAACA+CGG 0.669076 1_3:+6988154 Msa0100520:CDS
AATATGAAGGATAACATCGA+CGG 0.669534 1_3:+6988229 Msa0100520:CDS
CGCCGGTGGATCAGTTACCG+AGG 0.669945 1_3:+6988410 Msa0100520:CDS
AGTAATCGACAACGTTACCA+TGG 0.672069 1_3:+6988180 Msa0100520:CDS
TCGACGGTGATGGACTTGGG+GGG 0.674235 1_3:+6988245 Msa0100520:CDS
TGAGGTACTTTAGGCCAAGG+AGG 0.674876 1_3:-6983332 Msa0100510:CDS
GATGGTGGTGCGGATAACAT+GGG 0.675748 1_3:+6990193 Msa0100520:CDS
AGCACAGTCTCAGAATGTGG+TGG 0.676786 1_3:+6988447 Msa0100520:CDS
AAGAACATGATTACCTCCAG+AGG 0.679340 1_3:-6986513 None:intergenic
TTAGCAGCAGCAGAGCAAGA+GGG 0.696040 1_3:+6986805 Msa0100520:five_prime_UTR
GGTGTATGTCTAAAACAGGA+GGG 0.703712 1_3:-6983140 Msa0100510:three_prime_UTR
TGTCGGTGTAGTGGGTACGA+AGG 0.706118 1_3:-6988009 None:intergenic
GGTGGCAATCACATTCCAAG+TGG 0.712840 1_3:+6990486 Msa0100520:CDS
TTCACCCGGAGAAGGTACAG+GGG 0.750086 1_3:+6990105 Msa0100520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAACTAAAAAAAAATTA+GGG - chr1_3:6983584-6983603 Msa0100510:intron 10.0%
!!! TTTTGAACTAAAAAAAAATT+AGG - chr1_3:6983585-6983604 Msa0100510:intron 10.0%
!!! TTTGTGATTTTAATATAAAT+CGG - chr1_3:6983681-6983700 Msa0100510:intron 10.0%
!! TACATATTCAAAATATAAAT+GGG - chr1_3:6983707-6983726 Msa0100510:intron 10.0%
!! ATACATATTCAAAATATAAA+TGG - chr1_3:6983708-6983727 Msa0100510:intron 10.0%
!! AAAGTTAAAAAATAAAGTAT+TGG + chr1_3:6985565-6985584 Msa0100520:intron 10.0%
!!! TGTGTTTTTTTTTTTTTTTT+TGG - chr1_3:6987550-6987569 None:intergenic 10.0%
!! TAATGTATGATTAAAATAAA+AGG - chr1_3:6990366-6990385 None:intergenic 10.0%
!!! TTATTTTAATCATACATTAT+AGG + chr1_3:6990367-6990386 Msa0100520:intron 10.0%
!!! TATTTTAATCATACATTATA+GGG + chr1_3:6990368-6990387 Msa0100520:intron 10.0%
!! ATTAGTATAATATAATCATA+AGG - chr1_3:6991619-6991638 None:intergenic 10.0%
!! AATAAATAAATCTAACTCAT+AGG - chr1_3:6983631-6983650 Msa0100510:intron 15.0%
!! ACATATTCAAAATATAAATG+GGG - chr1_3:6983706-6983725 Msa0100510:intron 15.0%
!! TATTTAATAAGATTGTTTGA+AGG + chr1_3:6983975-6983994 Msa0100520:intron 15.0%
!! ATTACAATTTAATACCTATT+TGG - chr1_3:6984237-6984256 Msa0100510:intron 15.0%
!!! TGAGGTTTAATTTATTAATA+AGG + chr1_3:6984362-6984381 Msa0100520:intron 15.0%
!!! GAGGTTTAATTTATTAATAA+GGG + chr1_3:6984363-6984382 Msa0100520:intron 15.0%
!! TAGATTTATGAACTTATTAT+TGG + chr1_3:6984459-6984478 Msa0100520:intron 15.0%
!! AGATTTATGAACTTATTATT+GGG + chr1_3:6984460-6984479 Msa0100520:intron 15.0%
!!! TTTAACTTTTAAGTCTTTTT+TGG - chr1_3:6984731-6984750 None:intergenic 15.0%
!!! ATACATGTATTTTTCTTTTA+TGG + chr1_3:6985208-6985227 Msa0100520:intron 15.0%
!!! TGAATGTTTACTTTTTAAAA+TGG + chr1_3:6985824-6985843 Msa0100520:intron 15.0%
!!! GAATGTTTACTTTTTAAAAT+GGG + chr1_3:6985825-6985844 Msa0100520:intron 15.0%
!!! AGAAGTATATTTTAACAAAA+AGG - chr1_3:6986317-6986336 None:intergenic 15.0%
!!! TTTTGTTAAAATATACTTCT+AGG + chr1_3:6986317-6986336 Msa0100520:intron 15.0%
!!! AAGGTAAATTTTATTTTGAA+AGG - chr1_3:6986399-6986418 None:intergenic 15.0%
!! AAATAAAATTTACCTTTATG+TGG + chr1_3:6986403-6986422 Msa0100520:intron 15.0%
!! AAAAATGAATGAAAAATGAA+TGG + chr1_3:6986843-6986862 Msa0100520:five_prime_UTR 15.0%
!! AAAATGAATGAAAAATGAAT+GGG + chr1_3:6986844-6986863 Msa0100520:five_prime_UTR 15.0%
!!! GATGTTTTTTTATTTATTGT+GGG - chr1_3:6987601-6987620 None:intergenic 15.0%
!!! TGATGTTTTTTTATTTATTG+TGG - chr1_3:6987602-6987621 None:intergenic 15.0%
!!! GTTTTTTTTGTTAAGTTTTA+TGG + chr1_3:6987805-6987824 Msa0100520:exon 15.0%
!! AAATTAGTAATTAATCCAAA+AGG - chr1_3:6988669-6988688 None:intergenic 15.0%
!! TTAAGCAAAAATATAGATAA+CGG - chr1_3:6990675-6990694 None:intergenic 15.0%
!!! AAACTAGTACTTTTATATTT+AGG + chr1_3:6990862-6990881 Msa0100520:exon 15.0%
!!! AACTAGTACTTTTATATTTA+GGG + chr1_3:6990863-6990882 Msa0100520:exon 15.0%
!! TTTATGTTTGTATAATATTG+AGG + chr1_3:6991555-6991574 Msa0100520:three_prime_UTR 15.0%
!! TTATGTTTGTATAATATTGA+GGG + chr1_3:6991556-6991575 Msa0100520:three_prime_UTR 15.0%
!! AAACATTGAATTAGGATTTA+GGG - chr1_3:6982992-6983011 Msa0100510:intron 20.0%
!! AAAACATTGAATTAGGATTT+AGG - chr1_3:6982993-6983012 Msa0100510:intron 20.0%
!! GTATAAGAAAACATTGAATT+AGG - chr1_3:6983000-6983019 Msa0100510:intron 20.0%
!!! CACTTTTTGTCAAAAAAAAA+AGG - chr1_3:6983084-6983103 Msa0100510:three_prime_UTR 20.0%
!! TAAAAAAAAATTAGGGTTTC+AGG - chr1_3:6983577-6983596 Msa0100510:intron 20.0%
!!! TTATTGCTTGATTTGATTTT+TGG + chr1_3:6983654-6983673 Msa0100520:intron 20.0%
!! CATATTCAAAATATAAATGG+GGG - chr1_3:6983705-6983724 Msa0100510:intron 20.0%
!!! TTCAACAAAAATGGTTTTTT+GGG - chr1_3:6983750-6983769 Msa0100510:intron 20.0%
!!! TTTCAACAAAAATGGTTTTT+TGG - chr1_3:6983751-6983770 Msa0100510:intron 20.0%
!!! TTTTTTTATGTTCAAACTCA+GGG + chr1_3:6983845-6983864 Msa0100520:intron 20.0%
!! AAAAAAAAACGCAATTGAAA+GGG - chr1_3:6983907-6983926 Msa0100510:intron 20.0%
!! AAAAAAAAAACGCAATTGAA+AGG - chr1_3:6983908-6983927 Msa0100510:intron 20.0%
!! TAGAAGAAACTTAGTTAAAA+TGG - chr1_3:6983944-6983963 Msa0100510:intron 20.0%
!!! TTTAATCCCTTTTTTCATTA+TGG + chr1_3:6984097-6984116 Msa0100520:intron 20.0%
!!! TTAATCCCTTTTTTCATTAT+GGG + chr1_3:6984098-6984117 Msa0100520:intron 20.0%
!! ATAAACCCATAATGAAAAAA+GGG - chr1_3:6984106-6984125 Msa0100510:intron 20.0%
!! AATAAACCCATAATGAAAAA+AGG - chr1_3:6984107-6984126 Msa0100510:intron 20.0%
!!! AATTTTTCTTGTTTTTGCTT+AGG + chr1_3:6984157-6984176 Msa0100520:intron 20.0%
!! TCTAAATGATAATCTGTAAA+GGG - chr1_3:6984443-6984462 Msa0100510:intron 20.0%
!! ATCTAAATGATAATCTGTAA+AGG - chr1_3:6984444-6984463 Msa0100510:intron 20.0%
!! ACAAACTAAATTATTTGTGT+AGG + chr1_3:6984919-6984938 Msa0100520:intron 20.0%
!! TTGAATCAATAGTTATAACA+TGG - chr1_3:6985335-6985354 None:intergenic 20.0%
!!! TCATGAATGTCTTTTTAAAT+TGG + chr1_3:6985500-6985519 Msa0100520:intron 20.0%
!!! CATGAATGTCTTTTTAAATT+GGG + chr1_3:6985501-6985520 Msa0100520:intron 20.0%
!! TTAGAGAAAGATGTAAATTT+AGG + chr1_3:6985664-6985683 Msa0100520:intron 20.0%
!! CTTATACTTGTTTAGTATTA+TGG + chr1_3:6985691-6985710 Msa0100520:intron 20.0%
!!! AGCTTATATCTAATCTTTTA+TGG + chr1_3:6985757-6985776 Msa0100520:intron 20.0%
!!! TTTTTAAATGTATGTTCAGA+TGG + chr1_3:6986128-6986147 Msa0100520:intron 20.0%
!!! GACTGCATTTTATTAATAAT+AGG + chr1_3:6986150-6986169 Msa0100520:intron 20.0%
!!! TTTTGAATATAACATGTTAC+TGG + chr1_3:6986186-6986205 Msa0100520:intron 20.0%
!! TCATGTTTGCATAATAAAAA+AGG - chr1_3:6986636-6986655 None:intergenic 20.0%
!!! TTTTTATTATGCAAACATGA+TGG + chr1_3:6986636-6986655 Msa0100520:intron 20.0%
!!! TAAAGAATGCCATTAATTTT+AGG + chr1_3:6987086-6987105 Msa0100520:five_prime_UTR 20.0%
!! GAAATGAAGATAAAATATTG+GGG - chr1_3:6987573-6987592 None:intergenic 20.0%
!! GGAAATGAAGATAAAATATT+GGG - chr1_3:6987574-6987593 None:intergenic 20.0%
!! AGGAAATGAAGATAAAATAT+TGG - chr1_3:6987575-6987594 None:intergenic 20.0%
!! AAAAAGAATATACCATGAAA+TGG - chr1_3:6988519-6988538 None:intergenic 20.0%
!! AAAAAGAACAATGAGATAAA+TGG - chr1_3:6988571-6988590 None:intergenic 20.0%
!! TTTCTTGTAACAAAAATTTG+TGG - chr1_3:6988614-6988633 None:intergenic 20.0%
!!! AATAACAATTTTTCTGTTTG+TGG + chr1_3:6988636-6988655 Msa0100520:intron 20.0%
!!! CTTATTATTACAGTTGTTTT+TGG + chr1_3:6988716-6988735 Msa0100520:intron 20.0%
!!! AATTGGTTTGTATTTTATGT+TGG + chr1_3:6988768-6988787 Msa0100520:intron 20.0%
!! AGTTGAACAGAATTAAAATT+TGG + chr1_3:6988791-6988810 Msa0100520:intron 20.0%
!!! ATTAAAATTTGGTAGTTTTG+TGG + chr1_3:6988802-6988821 Msa0100520:intron 20.0%
!!! ATGAAAATGCAATTTTGAAT+TGG + chr1_3:6988867-6988886 Msa0100520:intron 20.0%
!!! TTGTGATTTCAATGTATTTT+TGG + chr1_3:6988905-6988924 Msa0100520:intron 20.0%
!! TTTGAATTTATGAGAAATCA+TGG + chr1_3:6988967-6988986 Msa0100520:intron 20.0%
!! TTGAATTTATGAGAAATCAT+GGG + chr1_3:6988968-6988987 Msa0100520:intron 20.0%
!!! CTAGATTTTATTACCAAATA+AGG + chr1_3:6989220-6989239 Msa0100520:intron 20.0%
!!! GTAAAAGAAGACATTTTTTT+TGG - chr1_3:6989547-6989566 None:intergenic 20.0%
!!! TGTTTGAAGAAAGTATTAAA+GGG + chr1_3:6989783-6989802 Msa0100520:intron 20.0%
!! GGAATAGTTATTAAAAAGAA+GGG - chr1_3:6990329-6990348 None:intergenic 20.0%
!! AACTAAAGCAAATTAATAAC+TGG + chr1_3:6990759-6990778 Msa0100520:CDS 20.0%
!! ATGTAATTTCAGTAAAGAAA+GGG + chr1_3:6991255-6991274 Msa0100520:three_prime_UTR 20.0%
!! TAATAAACATTCATCTTAAG+AGG + chr1_3:6991287-6991306 Msa0100520:three_prime_UTR 20.0%
!! TAGTATAATGCTACATAATT+AGG + chr1_3:6991456-6991475 Msa0100520:three_prime_UTR 20.0%
!! TACTATATGCTAAAACAAAT+TGG + chr1_3:6991483-6991502 Msa0100520:three_prime_UTR 20.0%
!! ACTATATGCTAAAACAAATT+GGG + chr1_3:6991484-6991503 Msa0100520:three_prime_UTR 20.0%
!! TATGTTTGTATAATATTGAG+GGG + chr1_3:6991557-6991576 Msa0100520:three_prime_UTR 20.0%
!!! GTTGTTTTTGTTCTTTAAAT+TGG + chr1_3:6991639-6991658 Msa0100520:three_prime_UTR 20.0%
!! TTGTTCTTTAAATTGGTATT+TGG + chr1_3:6991646-6991665 Msa0100520:three_prime_UTR 20.0%
! AACATTGAATTAGGATTTAG+GGG - chr1_3:6982991-6983010 Msa0100510:intron 25.0%
!!! TTTTTTGCTGAAACATACAT+TGG - chr1_3:6983022-6983041 Msa0100510:intron 25.0%
!! TGAAAAAAATGAGGTACTTT+AGG - chr1_3:6983344-6983363 Msa0100510:CDS 25.0%
! TTGAAGAGATGAAAAAAATG+AGG - chr1_3:6983353-6983372 Msa0100510:CDS 25.0%
! AAAGAGCAAAGTAAAACATT+TGG + chr1_3:6983407-6983426 Msa0100520:five_prime_UTR 25.0%
! ACATAAAATTGTACAGGAAA+GGG - chr1_3:6983508-6983527 Msa0100510:intron 25.0%
! ACTTACACATAAAATTGTAC+AGG - chr1_3:6983514-6983533 Msa0100510:intron 25.0%
! CAGTAGAATTTGTATAACAA+AGG - chr1_3:6983539-6983558 Msa0100510:intron 25.0%
! ATCTGATGTTTCAACAAAAA+TGG - chr1_3:6983759-6983778 Msa0100510:intron 25.0%
!!! CTTTTTTTATGTTCAAACTC+AGG + chr1_3:6983844-6983863 Msa0100520:intron 25.0%
!!! TGAAGGAAAATTTGCTTTTT+AGG + chr1_3:6983992-6984011 Msa0100520:intron 25.0%
!!! GAAGGAAAATTTGCTTTTTA+GGG + chr1_3:6983993-6984012 Msa0100520:intron 25.0%
!!! ACCACTTTGTTATTTTTCAA+AGG + chr1_3:6984270-6984289 Msa0100520:intron 25.0%
!!! CCACTTTGTTATTTTTCAAA+GGG + chr1_3:6984271-6984290 Msa0100520:intron 25.0%
! AAAGGGAATTATTACCATAA+AGG + chr1_3:6984320-6984339 Msa0100520:intron 25.0%
! AAGGGAATTATTACCATAAA+GGG + chr1_3:6984321-6984340 Msa0100520:intron 25.0%
! TAATTAATAGACAACCTTTC+AGG - chr1_3:6984665-6984684 Msa0100510:CDS 25.0%
! CAGGACATTATAATTATGTT+TGG + chr1_3:6984776-6984795 Msa0100520:intron 25.0%
! TCATAAGAGCTATATAATAG+TGG - chr1_3:6985121-6985140 None:intergenic 25.0%
! CTATTATATAGCTCTTATGA+TGG + chr1_3:6985121-6985140 Msa0100520:intron 25.0%
! CAGTAAAAACAACTAATTCA+TGG + chr1_3:6985280-6985299 Msa0100520:intron 25.0%
! AGAAAAATAAAACAAAACCC+AGG - chr1_3:6985460-6985479 None:intergenic 25.0%
! TAATCTATCGTTAAAAGTTG+AGG - chr1_3:6985647-6985666 None:intergenic 25.0%
!! TCTAACCTTACAATCAATTT+TGG - chr1_3:6985939-6985958 None:intergenic 25.0%
! GTTTGCATAATAAAAAAGGT+AGG - chr1_3:6986632-6986651 None:intergenic 25.0%
!!! CTATAATACTTTTTCCATCA+TGG - chr1_3:6986723-6986742 None:intergenic 25.0%
!! AAGATGTCGTAAATTTTGTA+TGG + chr1_3:6987014-6987033 Msa0100520:five_prime_UTR 25.0%
!! AGATGTCGTAAATTTTGTAT+GGG + chr1_3:6987015-6987034 Msa0100520:five_prime_UTR 25.0%
!! TTTCTTTCCTTTTGAACAAA+GGG - chr1_3:6987254-6987273 None:intergenic 25.0%
!!! TTTTTATTTATTGTGGGACT+AGG - chr1_3:6987595-6987614 None:intergenic 25.0%
! ATAAATGGCAAAGAAATTTG+AGG - chr1_3:6988556-6988575 None:intergenic 25.0%
!!! CAGTTGTTTTTGGATTTTTA+TGG + chr1_3:6988726-6988745 Msa0100520:intron 25.0%
! ATGGAATCATGTGATAAATA+TGG + chr1_3:6988745-6988764 Msa0100520:intron 25.0%
! TCATGTGATAAATATGGAAT+TGG + chr1_3:6988751-6988770 Msa0100520:intron 25.0%
! TGAATTTATGAGAAATCATG+GGG + chr1_3:6988969-6988988 Msa0100520:intron 25.0%
!!! ATGAGATTTTTTTTGTACAG+AGG + chr1_3:6989071-6989090 Msa0100520:intron 25.0%
!!! TGAGATTTTTTTTGTACAGA+GGG + chr1_3:6989072-6989091 Msa0100520:intron 25.0%
! GTTTATTCAAAAACTGGAAA+GGG - chr1_3:6989114-6989133 None:intergenic 25.0%
! TGTTTATTCAAAAACTGGAA+AGG - chr1_3:6989115-6989134 None:intergenic 25.0%
!! TTTAAAACAGAACTAAGAGA+AGG - chr1_3:6989172-6989191 None:intergenic 25.0%
!! TTTTATTACCAAATAAGGAG+CGG + chr1_3:6989225-6989244 Msa0100520:intron 25.0%
!!! GTTAATTACATTTTAGTCAC+TGG - chr1_3:6989305-6989324 None:intergenic 25.0%
!! ATGATGGAATGAAAATAACT+TGG + chr1_3:6989608-6989627 Msa0100520:intron 25.0%
! AAAAGTGATTACAGAAAATG+TGG - chr1_3:6989635-6989654 None:intergenic 25.0%
!! TTTAGTAATTCTGTCTGTTT+TGG + chr1_3:6989690-6989709 Msa0100520:intron 25.0%
!!! GTGTTTGAAGAAAGTATTAA+AGG + chr1_3:6989782-6989801 Msa0100520:intron 25.0%
! ATCTTTCAAGAATACAAGTA+GGG + chr1_3:6989911-6989930 Msa0100520:intron 25.0%
!!! AGGCTTTAAAATATACTTTC+AGG - chr1_3:6990036-6990055 None:intergenic 25.0%
!! ATCAGTTTTACTTGTCAAAT+AGG - chr1_3:6990056-6990075 None:intergenic 25.0%
! GGGAATAGTTATTAAAAAGA+AGG - chr1_3:6990330-6990349 None:intergenic 25.0%
! TATATAGTTAAACGTACTGT+TGG - chr1_3:6990518-6990537 None:intergenic 25.0%
!! TAATGTATTATGTGCTTTTC+AGG + chr1_3:6990697-6990716 Msa0100520:intron 25.0%
!! ATAACTGGTTTATCAATCAA+AGG + chr1_3:6990774-6990793 Msa0100520:CDS 25.0%
! TGTAATAACCACTAATCTTA+GGG - chr1_3:6990906-6990925 None:intergenic 25.0%
! TAAAAATAACAAAGCAAGAG+AGG - chr1_3:6990962-6990981 None:intergenic 25.0%
!!! TCTCTTGCTTTGTTATTTTT+AGG + chr1_3:6990961-6990980 Msa0100520:three_prime_UTR 25.0%
!!! CTCTTGCTTTGTTATTTTTA+GGG + chr1_3:6990962-6990981 Msa0100520:three_prime_UTR 25.0%
! TTAGTGAAGGTTATAGTAAA+GGG + chr1_3:6990989-6991008 Msa0100520:three_prime_UTR 25.0%
! GATGTAATTTCAGTAAAGAA+AGG + chr1_3:6991254-6991273 Msa0100520:three_prime_UTR 25.0%
!!! TCTAGTGTTATTAGTCTTTT+TGG + chr1_3:6991310-6991329 Msa0100520:three_prime_UTR 25.0%
! ATGTTTGTATAATATTGAGG+GGG + chr1_3:6991558-6991577 Msa0100520:three_prime_UTR 25.0%
!! GTATTTGGAATGTATGTAAA+GGG + chr1_3:6991661-6991680 Msa0100520:three_prime_UTR 25.0%
!! TATTTGGAATGTATGTAAAG+GGG + chr1_3:6991662-6991681 Msa0100520:three_prime_UTR 25.0%
! AGTGAAAGTTGATTGCAATA+TGG + chr1_3:6983100-6983119 Msa0100520:five_prime_UTR 30.0%
! AATTTTAGATAGTGCATTGG+GGG - chr1_3:6983165-6983184 Msa0100510:three_prime_UTR 30.0%
! CAATTTTAGATAGTGCATTG+GGG - chr1_3:6983166-6983185 Msa0100510:three_prime_UTR 30.0%
! CCAATTTTAGATAGTGCATT+GGG - chr1_3:6983167-6983186 Msa0100510:three_prime_UTR 30.0%
! CCAATGCACTATCTAAAATT+GGG + chr1_3:6983165-6983184 Msa0100520:five_prime_UTR 30.0%
TTTGGTTAGCAAAGGTTATT+GGG - chr1_3:6983195-6983214 Msa0100510:three_prime_UTR 30.0%
AATAACCTTTGCTAACCAAA+CGG + chr1_3:6983195-6983214 Msa0100520:five_prime_UTR 30.0%
TTTCAGGATGAATGAAATGA+GGG - chr1_3:6983234-6983253 Msa0100510:exon 30.0%
ATTTCAGGATGAATGAAATG+AGG - chr1_3:6983235-6983254 Msa0100510:exon 30.0%
! ATGATTTTGTAGGGATACAA+AGG - chr1_3:6983385-6983404 Msa0100510:intron 30.0%
! GCTCTTTTCATGATTTTGTA+GGG - chr1_3:6983394-6983413 Msa0100510:intron 30.0%
! TGCTCTTTTCATGATTTTGT+AGG - chr1_3:6983395-6983414 Msa0100510:intron 30.0%
CACATAAAATTGTACAGGAA+AGG - chr1_3:6983509-6983528 Msa0100510:intron 30.0%
TTAGGGTTTCAGGAAAAATA+AGG - chr1_3:6983567-6983586 Msa0100510:intron 30.0%
CTTTCGATGTTAAGACTATA+CGG - chr1_3:6983818-6983837 Msa0100510:intron 30.0%
AACTGAAAGACGATAACAAA+AGG - chr1_3:6984133-6984152 Msa0100510:intron 30.0%
! TTTTGCTTAGGAATGACAAA+AGG + chr1_3:6984169-6984188 Msa0100520:intron 30.0%
AAAGGAAGACTATTGAGATA+TGG + chr1_3:6984187-6984206 Msa0100520:five_prime_UTR 30.0%
!! TGGCTTTTGATTAAATGTGA+TGG + chr1_3:6984207-6984226 Msa0100520:five_prime_UTR 30.0%
! CCCTTTGAAAAATAACAAAG+TGG - chr1_3:6984274-6984293 Msa0100510:intron 30.0%
AATAATTCCCTTTCATGGTA+GGG - chr1_3:6984313-6984332 Msa0100510:intron 30.0%
TAATAATTCCCTTTCATGGT+AGG - chr1_3:6984314-6984333 Msa0100510:intron 30.0%
ATGGTAATAATTCCCTTTCA+TGG - chr1_3:6984318-6984337 Msa0100510:intron 30.0%
!! CAACTGTTTTTCAAATACTG+AGG + chr1_3:6984344-6984363 Msa0100520:intron 30.0%
ACAAAGCTTATGTTACAATG+TGG - chr1_3:6984401-6984420 Msa0100510:intron 30.0%
! AGTATTCAAAAAGTGATGGA+AGG - chr1_3:6984507-6984526 Msa0100510:intron 30.0%
CACAAGTATTCAAAAAGTGA+TGG - chr1_3:6984511-6984530 Msa0100510:intron 30.0%
!!! CATCACTTTTTGAATACTTG+TGG + chr1_3:6984509-6984528 Msa0100520:intron 30.0%
TGTAATATAAAAGCGACAGA+GGG - chr1_3:6984573-6984592 Msa0100510:intron 30.0%
ATGTAATATAAAAGCGACAG+AGG - chr1_3:6984574-6984593 Msa0100510:intron 30.0%
!! GTGTTTTTACAAATGCATGA+AGG - chr1_3:6984643-6984662 Msa0100510:intron 30.0%
CATTTGTAAAAACACCTGAA+AGG + chr1_3:6984648-6984667 Msa0100520:intron 30.0%
TCTATTAATTAGATCTGCCA+TGG + chr1_3:6984674-6984693 Msa0100520:intron 30.0%
CTGTCACATATTAAGCATAA+GGG - chr1_3:6984759-6984778 None:intergenic 30.0%
AGAAACGTGAAAATACCTTT+AGG + chr1_3:6984875-6984894 Msa0100520:intron 30.0%
GTGATTTAACAAAAGCCTAA+AGG - chr1_3:6984893-6984912 None:intergenic 30.0%
ATTTGTGTAGGAATCTCAAA+AGG + chr1_3:6984931-6984950 Msa0100520:intron 30.0%
TTTGTGTAGGAATCTCAAAA+GGG + chr1_3:6984932-6984951 Msa0100520:intron 30.0%
! CTACATCTATTGGTTAGATT+TGG - chr1_3:6984988-6985007 None:intergenic 30.0%
!! TTGAGTTGATGACTTTGTTT+GGG + chr1_3:6985054-6985073 Msa0100520:intron 30.0%
TAGTGGTTATCTCTTTACAA+CGG - chr1_3:6985104-6985123 None:intergenic 30.0%
ACTTTCATTGGAAACTCATA+AGG + chr1_3:6985245-6985264 Msa0100520:intron 30.0%
ACAAGTGTAAGTTCAAACAA+TGG - chr1_3:6985369-6985388 None:intergenic 30.0%
TGTAATATGACTTACAATCC+TGG + chr1_3:6985439-6985458 Msa0100520:intron 30.0%
GTAATATGACTTACAATCCT+GGG + chr1_3:6985440-6985459 Msa0100520:intron 30.0%
TTAGTATTATGGCATGTGAA+TGG + chr1_3:6985702-6985721 Msa0100520:intron 30.0%
ACATGTACATGTTATAGTTG+TGG - chr1_3:6985785-6985804 None:intergenic 30.0%
!!! CTACCTTTGAAGTTTTCTAA+TGG + chr1_3:6985888-6985907 Msa0100520:five_prime_UTR 30.0%
GAACCATTAGAAAACTTCAA+AGG - chr1_3:6985894-6985913 None:intergenic 30.0%
!! AATTTTGGAGGTGATAAAAC+CGG - chr1_3:6985924-6985943 None:intergenic 30.0%
! AACCTTACAATCAATTTTGG+AGG - chr1_3:6985936-6985955 None:intergenic 30.0%
TTCAAGAACAAGAATGATGA+TGG - chr1_3:6986071-6986090 None:intergenic 30.0%
AATATAACATGTTACTGGTG+TGG + chr1_3:6986191-6986210 Msa0100520:intron 30.0%
!!! AATACTTTTTCCATCATGGT+TGG - chr1_3:6986719-6986738 None:intergenic 30.0%
TAAACACTTCATACTCTGTT+GGG - chr1_3:6986755-6986774 None:intergenic 30.0%
! GTGAAGTATTTAAACCCAAT+AGG - chr1_3:6986870-6986889 None:intergenic 30.0%
! TCAAATAAGTGTCGTAGAAA+AGG - chr1_3:6986963-6986982 None:intergenic 30.0%
GTCAAAAAGCCATAAAAAGT+GGG - chr1_3:6987139-6987158 None:intergenic 30.0%
AGTCAAAAAGCCATAAAAAG+TGG - chr1_3:6987140-6987159 None:intergenic 30.0%
TTAGAAACCCTTTGTTCAAA+AGG + chr1_3:6987244-6987263 Msa0100520:five_prime_UTR 30.0%
! GTTTCTTTCCTTTTGAACAA+AGG - chr1_3:6987255-6987274 None:intergenic 30.0%
CTATCACCAAAAATGGAATT+CGG + chr1_3:6987315-6987334 Msa0100520:five_prime_UTR 30.0%
! TGAATTCCGAATTCCATTTT+TGG - chr1_3:6987324-6987343 None:intergenic 30.0%
ATCATCACACATACTTTGTT+TGG + chr1_3:6987404-6987423 Msa0100520:five_prime_UTR 30.0%
GAGAAAATATGACAAGACAA+TGG - chr1_3:6987518-6987537 None:intergenic 30.0%
! TTTGTGATGTTTTGTGTTGT+TGG - chr1_3:6987647-6987666 None:intergenic 30.0%
GCTATTATAGGTTTATACCA+TGG - chr1_3:6987735-6987754 None:intergenic 30.0%
TTTGTGTGTGTTAGAAAACA+AGG - chr1_3:6987767-6987786 None:intergenic 30.0%
! TGTTGTTATTGTTGTTGGTT+TGG - chr1_3:6987883-6987902 None:intergenic 30.0%
! TGAGTTGTTGTTATTGTTGT+TGG - chr1_3:6987888-6987907 None:intergenic 30.0%
! ATTGTTGTTGTTGTTGTTGT+CGG - chr1_3:6988029-6988048 None:intergenic 30.0%
ACACGAGTTAAGTAATATGA+AGG + chr1_3:6988216-6988235 Msa0100520:CDS 30.0%
AATATGAAGGATAACATCGA+CGG + chr1_3:6988229-6988248 Msa0100520:CDS 30.0%
!!! AATTTGGTAGTTTTGTGGTA+TGG + chr1_3:6988807-6988826 Msa0100520:intron 30.0%
! AAATGCAATTTTGAATTGGC+TGG + chr1_3:6988871-6988890 Msa0100520:intron 30.0%
!!! AATTTTGAATTGGCTGGTTT+TGG + chr1_3:6988877-6988896 Msa0100520:intron 30.0%
!!! ATTTTGAATTGGCTGGTTTT+GGG + chr1_3:6988878-6988897 Msa0100520:intron 30.0%
GAATTTATGAGAAATCATGG+GGG + chr1_3:6988970-6988989 Msa0100520:intron 30.0%
!!! GAGATTTTTTTTGTACAGAG+GGG + chr1_3:6989073-6989092 Msa0100520:intron 30.0%
GAGTGTGTTTATTCAAAAAC+TGG - chr1_3:6989120-6989139 None:intergenic 30.0%
!!! GGTGTACTTTTGATTTAGAA+TGG + chr1_3:6989246-6989265 Msa0100520:intron 30.0%
TTGTTGCAATTGTTCTTTGA+AGG - chr1_3:6989448-6989467 None:intergenic 30.0%
!!! CATTTTTTTTGGTACCTGTT+AGG - chr1_3:6989536-6989555 None:intergenic 30.0%
!! TAAAGCTTTGTTGCATATGA+TGG + chr1_3:6989592-6989611 Msa0100520:intron 30.0%
TAATCAGGGGAACATAATAT+AGG - chr1_3:6989660-6989679 None:intergenic 30.0%
! TACTTTTGCAGTTTGATATG+CGG - chr1_3:6989887-6989906 None:intergenic 30.0%
CATCTTTCAAGAATACAAGT+AGG + chr1_3:6989910-6989929 Msa0100520:intron 30.0%
TCTTTCAAGAATACAAGTAG+GGG + chr1_3:6989912-6989931 Msa0100520:intron 30.0%
TTATACCAACAGAGAATGAA+AGG + chr1_3:6990227-6990246 Msa0100520:CDS 30.0%
AGCATGAATTGAAACATGTA+AGG + chr1_3:6990281-6990300 Msa0100520:intron 30.0%
GCATGAATTGAAACATGTAA+GGG + chr1_3:6990282-6990301 Msa0100520:intron 30.0%
TAAAAGGAGATGAATCATGT+GGG - chr1_3:6990350-6990369 None:intergenic 30.0%
ATAAAAGGAGATGAATCATG+TGG - chr1_3:6990351-6990370 None:intergenic 30.0%
TCATACATTATAGGGTTACA+AGG + chr1_3:6990376-6990395 Msa0100520:intron 30.0%
GTAATAACCACTAATCTTAG+GGG - chr1_3:6990905-6990924 None:intergenic 30.0%
GTGTAATAACCACTAATCTT+AGG - chr1_3:6990907-6990926 None:intergenic 30.0%
TGTGATTTCCTTAACAAGAA+GGG - chr1_3:6990935-6990954 None:intergenic 30.0%
ATGTGATTTCCTTAACAAGA+AGG - chr1_3:6990936-6990955 None:intergenic 30.0%
CTTAGTGAAGGTTATAGTAA+AGG + chr1_3:6990988-6991007 Msa0100520:three_prime_UTR 30.0%
TAGTGAAGGTTATAGTAAAG+GGG + chr1_3:6990990-6991009 Msa0100520:three_prime_UTR 30.0%
ATGTAGCATTATACTAAAGC+AGG - chr1_3:6991452-6991471 None:intergenic 30.0%
TGTTTGTATAATATTGAGGG+GGG + chr1_3:6991559-6991578 Msa0100520:three_prime_UTR 30.0%
! GGTATTTGGAATGTATGTAA+AGG + chr1_3:6991660-6991679 Msa0100520:three_prime_UTR 30.0%
AAAACAGGAGGGCAAAAAAA+AGG - chr1_3:6983132-6983151 Msa0100510:three_prime_UTR 35.0%
! ATTTTAGATAGTGCATTGGG+GGG - chr1_3:6983164-6983183 Msa0100510:three_prime_UTR 35.0%
! CCCAATGCACTATCTAAAAT+TGG + chr1_3:6983164-6983183 Msa0100520:five_prime_UTR 35.0%
! CCCAATTTTAGATAGTGCAT+TGG - chr1_3:6983168-6983187 Msa0100510:three_prime_UTR 35.0%
GTTTGGTTAGCAAAGGTTAT+TGG - chr1_3:6983196-6983215 Msa0100510:three_prime_UTR 35.0%
ATAACCTTTGCTAACCAAAC+GGG + chr1_3:6983196-6983215 Msa0100520:five_prime_UTR 35.0%
TTCAGGATGAATGAAATGAG+GGG - chr1_3:6983233-6983252 Msa0100510:exon 35.0%
GTTTCTCCATTGTTGAAACT+AGG - chr1_3:6983469-6983488 Msa0100510:intron 35.0%
! TTTGGGACTCTATTAATGAG+AGG - chr1_3:6983733-6983752 Msa0100510:intron 35.0%
AAAAAACGCAATTGAAAGGG+AGG - chr1_3:6983904-6983923 Msa0100510:intron 35.0%
! TGATTTCATGTTTGAGACTG+TGG + chr1_3:6984027-6984046 Msa0100520:intron 35.0%
! GATTTCATGTTTGAGACTGT+GGG + chr1_3:6984028-6984047 Msa0100520:intron 35.0%
! AATGTGATGGAGAACCAAAT+AGG + chr1_3:6984220-6984239 Msa0100520:five_prime_UTR 35.0%
ATAATTCCCTTTCATGGTAG+GGG - chr1_3:6984312-6984331 Msa0100510:intron 35.0%
TGAAAAACAGTTGCCCTTTA+TGG - chr1_3:6984337-6984356 Msa0100510:intron 35.0%
! CTCTCAATGATTGTTTTCCA+TGG - chr1_3:6984694-6984713 None:intergenic 35.0%
CCTGTCACATATTAAGCATA+AGG - chr1_3:6984760-6984779 None:intergenic 35.0%
CCTTATGCTTAATATGTGAC+AGG + chr1_3:6984757-6984776 Msa0100520:intron 35.0%
ACTGCTCTTTCTACATCTAT+TGG - chr1_3:6984998-6985017 None:intergenic 35.0%
!! CTTGAGTTGATGACTTTGTT+TGG + chr1_3:6985053-6985072 Msa0100520:intron 35.0%
!! TGAGTTGATGACTTTGTTTG+GGG + chr1_3:6985055-6985074 Msa0100520:intron 35.0%
ATAGCTCTTATGATGGCATA+TGG + chr1_3:6985128-6985147 Msa0100520:intron 35.0%
! TTCAGAAGTGTGACTTTCAT+TGG + chr1_3:6985233-6985252 Msa0100520:intron 35.0%
CACCTCCAAAATTGATTGTA+AGG + chr1_3:6985931-6985950 Msa0100520:five_prime_UTR 35.0%
! ACATGCTTTTATGTACCTTC+TGG + chr1_3:6986026-6986045 Msa0100520:intron 35.0%
GGCTGTTGAAAGATATTGAT+TGG + chr1_3:6986449-6986468 Msa0100520:five_prime_UTR 35.0%
! GATATTGATTGGAGACATCA+TGG + chr1_3:6986460-6986479 Msa0100520:five_prime_UTR 35.0%
TTCTTGTTCACATGCTTTCT+GGG + chr1_3:6986531-6986550 Msa0100520:five_prime_UTR 35.0%
TATACTTGCAGTGATTCTCA+AGG - chr1_3:6986571-6986590 None:intergenic 35.0%
GCAAATAAGATGCAAGAAGA+AGG + chr1_3:6986689-6986708 Msa0100520:intron 35.0%
CTAAACACTTCATACTCTGT+TGG - chr1_3:6986756-6986775 None:intergenic 35.0%
TGAAAAATGAATGGGCCTAT+TGG + chr1_3:6986852-6986871 Msa0100520:five_prime_UTR 35.0%
GAAAAATGAATGGGCCTATT+GGG + chr1_3:6986853-6986872 Msa0100520:five_prime_UTR 35.0%
! TGACTTTTCAGCATGAAGAA+AGG + chr1_3:6986990-6987009 Msa0100520:five_prime_UTR 35.0%
CTGCAAAGGCCTAAAATTAA+TGG - chr1_3:6987098-6987117 None:intergenic 35.0%
!!! CAAACACATCCCACTTTTTA+TGG + chr1_3:6987127-6987146 Msa0100520:five_prime_UTR 35.0%
TGTTCAGAGATGTTTATGCT+TGG - chr1_3:6987184-6987203 None:intergenic 35.0%
! ATTTGTCTTTTCCCAGAGAA+TGG - chr1_3:6987225-6987244 None:intergenic 35.0%
! AAGCATGCCAACAATTTTCA+AGG + chr1_3:6987286-6987305 Msa0100520:five_prime_UTR 35.0%
GCGTAAACCTTGAAAATTGT+TGG - chr1_3:6987296-6987315 None:intergenic 35.0%
GTTTACGCTATCACCAAAAA+TGG + chr1_3:6987308-6987327 Msa0100520:five_prime_UTR 35.0%
! GTGTGATGATGTGTATAAAG+TGG - chr1_3:6987394-6987413 None:intergenic 35.0%
TAGAATGTGGAGTAGAAAGA+AGG - chr1_3:6987473-6987492 None:intergenic 35.0%
AATGGAAGATGAAGAAGAAG+GGG - chr1_3:6987500-6987519 None:intergenic 35.0%
CAATGGAAGATGAAGAAGAA+GGG - chr1_3:6987501-6987520 None:intergenic 35.0%
ACAATGGAAGATGAAGAAGA+AGG - chr1_3:6987502-6987521 None:intergenic 35.0%
!! TTTGTGTTGTTGGTTTGGTT+GGG - chr1_3:6987637-6987656 None:intergenic 35.0%
!!! TTTTGTGTTGTTGGTTTGGT+TGG - chr1_3:6987638-6987657 None:intergenic 35.0%
!! GATGTTTTGTGTTGTTGGTT+TGG - chr1_3:6987642-6987661 None:intergenic 35.0%
! ACCATGGTATTGAACTTGAA+GGG - chr1_3:6987719-6987738 None:intergenic 35.0%
! TACCATGGTATTGAACTTGA+AGG - chr1_3:6987720-6987739 None:intergenic 35.0%
AGGTACTAGGTAGCTATTAT+AGG - chr1_3:6987747-6987766 None:intergenic 35.0%
! GTGTTAGAAAACAAGGTACT+AGG - chr1_3:6987760-6987779 None:intergenic 35.0%
CAAACATACACACACTTGTT+TGG + chr1_3:6987783-6987802 Msa0100520:five_prime_UTR 35.0%
!!! CTTGTGAAAGATGTTGGTTT+TGG - chr1_3:6987835-6987854 None:intergenic 35.0%
! TGGTTTGGAGTTGGTTATTA+GGG - chr1_3:6987964-6987983 None:intergenic 35.0%
GACAACAACTGTTCATACAA+CGG - chr1_3:6988361-6988380 None:intergenic 35.0%
GTTGTATGAACAGTTGTTGT+CGG + chr1_3:6988360-6988379 Msa0100520:CDS 35.0%
CAAAGAACTTGACCATTTCA+TGG + chr1_3:6988504-6988523 Msa0100520:CDS 35.0%
!!! GTTTGTGGTTTTAGTCCTTT+TGG + chr1_3:6988651-6988670 Msa0100520:intron 35.0%
! TTTTTGGATGATTGCTCAAG+TGG + chr1_3:6988921-6988940 Msa0100520:intron 35.0%
! TTTTGGATGATTGCTCAAGT+GGG + chr1_3:6988922-6988941 Msa0100520:intron 35.0%
TAAAAGCAGCAACGTAATCA+GGG - chr1_3:6989674-6989693 None:intergenic 35.0%
GTCTCTTGTAAGACTATACA+AGG + chr1_3:6989712-6989731 Msa0100520:intron 35.0%
TTAAAGGGTTCATTGTGCTT+TGG + chr1_3:6989798-6989817 Msa0100520:intron 35.0%
! GCTGGTCTATTATCTCTTAT+AGG + chr1_3:6990000-6990019 Msa0100520:intron 35.0%
CATTCTCTGTTGGTATAAGA+GGG - chr1_3:6990225-6990244 None:intergenic 35.0%
TCATTCTCTGTTGGTATAAG+AGG - chr1_3:6990226-6990245 None:intergenic 35.0%
GAAAATTGTGGACATAAGAG+AGG + chr1_3:6990400-6990419 Msa0100520:CDS 35.0%
GTTAAACGTACTGTTGGATA+TGG - chr1_3:6990512-6990531 None:intergenic 35.0%
!! TGTATTATGTGCTTTTCAGG+AGG + chr1_3:6990700-6990719 Msa0100520:intron 35.0%
GGTTTATCAATCAAAGGAAG+AGG + chr1_3:6990780-6990799 Msa0100520:CDS 35.0%
TCAATCAAAGGAAGAGGAAT+TGG + chr1_3:6990786-6990805 Msa0100520:CDS 35.0%
TTCAAGACAGTAGAAGTTGA+AGG - chr1_3:6990821-6990840 None:intergenic 35.0%
!! TTTTTAGGGAGACTTAGTGA+AGG + chr1_3:6990976-6990995 Msa0100520:three_prime_UTR 35.0%
AAACAAAGAAGTCTGTTGAG+AGG + chr1_3:6991201-6991220 Msa0100520:three_prime_UTR 35.0%
AAGAGCAGCATTCAAAGTAA+AGG + chr1_3:6991226-6991245 Msa0100520:three_prime_UTR 35.0%
TACTTGCTTCAGATTAGCAT+TGG - chr1_3:6991362-6991381 None:intergenic 35.0%
! TAATCTGAAGCAAGTACAAC+AGG + chr1_3:6991366-6991385 Msa0100520:three_prime_UTR 35.0%
! TATAATATTGAGGGGGGTAT+AGG + chr1_3:6991565-6991584 Msa0100520:three_prime_UTR 35.0%
! ATTCTTGCGTTGTGTCGTTA+AGG - chr1_3:6982961-6982980 Msa0100510:intron 40.0%
! GGTGTATGTCTAAAACAGGA+GGG - chr1_3:6983143-6983162 Msa0100510:three_prime_UTR 40.0%
ATAACCCGTTTGGTTAGCAA+AGG - chr1_3:6983203-6983222 Msa0100510:three_prime_UTR 40.0%
AGAACGTGTATCAGGATTTC+AGG - chr1_3:6983250-6983269 Msa0100510:CDS 40.0%
GAGAATGAAGAACGTGTATC+AGG - chr1_3:6983258-6983277 Msa0100510:CDS 40.0%
! AAATGAGGTACTTTAGGCCA+AGG - chr1_3:6983338-6983357 Msa0100510:CDS 40.0%
AAGAGTTTCCAAGAGAACTC+TGG + chr1_3:6983443-6983462 Msa0100520:five_prime_UTR 40.0%
GATGTTAAGACTATACGGCT+TGG - chr1_3:6983813-6983832 Msa0100510:intron 40.0%
CTTACAGTAGGTCCATGAAT+GGG - chr1_3:6983873-6983892 Msa0100510:intron 40.0%
ACTTACAGTAGGTCCATGAA+TGG - chr1_3:6983874-6983893 Msa0100510:intron 40.0%
!! TTATTGGGAGCACTGTAAAC+TGG + chr1_3:6984475-6984494 Msa0100520:intron 40.0%
!! TATTGGGAGCACTGTAAACT+GGG + chr1_3:6984476-6984495 Msa0100520:intron 40.0%
CTCAAAAGGGCTCAACAAAT+TGG + chr1_3:6984945-6984964 Msa0100520:intron 40.0%
TTATGTACCTTCTGGACTCT+TGG + chr1_3:6986034-6986053 Msa0100520:intron 40.0%
TCTTTCAACAGCCAGCTTAT+GGG - chr1_3:6986442-6986461 None:intergenic 40.0%
ATCTTTCAACAGCCAGCTTA+TGG - chr1_3:6986443-6986462 None:intergenic 40.0%
AAGAACATGATTACCTCCAG+AGG - chr1_3:6986516-6986535 None:intergenic 40.0%
GTTCTTGTTCACATGCTTTC+TGG + chr1_3:6986530-6986549 Msa0100520:five_prime_UTR 40.0%
! GTTTGCAGATTTTGCTGCAA+AGG - chr1_3:6987112-6987131 None:intergenic 40.0%
TGTTTATGCTTGGCAAGTTG+TGG - chr1_3:6987174-6987193 None:intergenic 40.0%
ATATTCTACCGTCCATTCTC+TGG + chr1_3:6987210-6987229 Msa0100520:five_prime_UTR 40.0%
TATTCTACCGTCCATTCTCT+GGG + chr1_3:6987211-6987230 Msa0100520:five_prime_UTR 40.0%
! ATTGTTGGCATGCTTTTGTC+AGG - chr1_3:6987281-6987300 None:intergenic 40.0%
AGTAGAAAGAAGGAAAGGGA+GGG - chr1_3:6987463-6987482 None:intergenic 40.0%
GTGGAGTAGAAAGAAGGAAA+GGG - chr1_3:6987467-6987486 None:intergenic 40.0%
TGTGGAGTAGAAAGAAGGAA+AGG - chr1_3:6987468-6987487 None:intergenic 40.0%
! ACCCTTCAAGTTCAATACCA+TGG + chr1_3:6987715-6987734 Msa0100520:five_prime_UTR 40.0%
GCAACTCTTGTGAAAGATGT+TGG - chr1_3:6987841-6987860 None:intergenic 40.0%
TGGTCTGTGAAATGTTGGAT+TGG - chr1_3:6987863-6987882 None:intergenic 40.0%
!! TGGTTTGGTCTGTGAAATGT+TGG - chr1_3:6987868-6987887 None:intergenic 40.0%
! TTGGAGTTGGTTATTAGGGT+CGG - chr1_3:6987960-6987979 None:intergenic 40.0%
! GTGGTTTGGAGTTGGTTATT+AGG - chr1_3:6987965-6987984 None:intergenic 40.0%
AGTAATCGACAACGTTACCA+TGG + chr1_3:6988180-6988199 Msa0100520:CDS 40.0%
TAACTCGTGTTCTACTTCTC+CGG - chr1_3:6988206-6988225 None:intergenic 40.0%
GAATGGATACTTGATGTGCA+GGG + chr1_3:6988944-6988963 Msa0100520:intron 40.0%
TTTATGAGAAATCATGGGGG+TGG + chr1_3:6988973-6988992 Msa0100520:intron 40.0%
AAAGTACACCGCTCCTTATT+TGG - chr1_3:6989236-6989255 None:intergenic 40.0%
CAATCCTTACAAAGCCTAAC+AGG + chr1_3:6989519-6989538 Msa0100520:CDS 40.0%
AAAAGCAGCAACGTAATCAG+GGG - chr1_3:6989673-6989692 None:intergenic 40.0%
CTAAAAGCAGCAACGTAATC+AGG - chr1_3:6989675-6989694 None:intergenic 40.0%
TTGCAAAGTTGCAATGCATG+TGG - chr1_3:6989738-6989757 None:intergenic 40.0%
TTCAAGAATACAAGTAGGGG+TGG + chr1_3:6989915-6989934 Msa0100520:intron 40.0%
TCAAGAATACAAGTAGGGGT+GGG + chr1_3:6989916-6989935 Msa0100520:intron 40.0%
! TGGCCTACTTTGAAAGTCTT+AGG + chr1_3:6989971-6989990 Msa0100520:intron 40.0%
AGGCCTAAGACTTTCAAAGT+AGG - chr1_3:6989977-6989996 None:intergenic 40.0%
AGAGATAATAGACCAGCTTG+AGG - chr1_3:6989997-6990016 None:intergenic 40.0%
TTTCTGATTGCTGCATGAAC+AGG + chr1_3:6990079-6990098 Msa0100520:intron 40.0%
!!! CTGTTCGATGGTAGTTTTGA+TGG + chr1_3:6990175-6990194 Msa0100520:CDS 40.0%
!!! TTCGATGGTAGTTTTGATGG+TGG + chr1_3:6990178-6990197 Msa0100520:CDS 40.0%
AGAGAATGAAAGGTCCCTAA+TGG + chr1_3:6990237-6990256 Msa0100520:CDS 40.0%
TTGTCTTACACGCTCCATTA+GGG - chr1_3:6990254-6990273 None:intergenic 40.0%
GGGTTACAAGGAGAAAATTG+TGG + chr1_3:6990388-6990407 Msa0100520:intron 40.0%
TGACACAACTTCTGTCCTTA+AGG + chr1_3:6990460-6990479 Msa0100520:CDS 40.0%
! CACATGGACTAATGTGCATT+GGG - chr1_3:6990622-6990641 None:intergenic 40.0%
! ACACATGGACTAATGTGCAT+TGG - chr1_3:6990623-6990642 None:intergenic 40.0%
CTTTCTGTGATGCTAACACA+TGG - chr1_3:6990638-6990657 None:intergenic 40.0%
TTCAGGAGGAAGATAAAGCA+AGG + chr1_3:6990714-6990733 Msa0100520:intron 40.0%
TCTTGAAGAGCAAACGCAAA+AGG + chr1_3:6990834-6990853 Msa0100520:CDS 40.0%
GTACCAACACTACAGATTGA+AGG + chr1_3:6991030-6991049 Msa0100520:three_prime_UTR 40.0%
GTGTCAAAACTAATCCCTGA+AGG + chr1_3:6991426-6991445 Msa0100520:three_prime_UTR 40.0%
TATACTAAAGCAGGCCTTCA+GGG - chr1_3:6991443-6991462 None:intergenic 40.0%
TTATACTAAAGCAGGCCTTC+AGG - chr1_3:6991444-6991463 None:intergenic 40.0%
! GGGTGTATGTCTAAAACAGG+AGG - chr1_3:6983144-6983163 Msa0100510:three_prime_UTR 45.0%
GATGAATGAAATGAGGGGAG+AGG - chr1_3:6983228-6983247 Msa0100510:exon 45.0%
AAACTAGGCCAGAGTTCTCT+TGG - chr1_3:6983454-6983473 Msa0100510:intron 45.0%
CTCTGGCCTAGTTTCAACAA+TGG + chr1_3:6983460-6983479 Msa0100520:five_prime_UTR 45.0%
AAACTCAGGGAACCCATTCA+TGG + chr1_3:6983858-6983877 Msa0100520:intron 45.0%
GAGGAAAGGGAACTTACAGT+AGG - chr1_3:6983885-6983904 Msa0100510:intron 45.0%
CGCAATTGAAAGGGAGGAAA+GGG - chr1_3:6983898-6983917 Msa0100510:intron 45.0%
ACGCAATTGAAAGGGAGGAA+AGG - chr1_3:6983899-6983918 Msa0100510:intron 45.0%
TTTCAAAGGGTCCTGCTAAC+CGG + chr1_3:6984284-6984303 Msa0100520:intron 45.0%
! AGGGCAAGAAGCACAAAAGT+GGG - chr1_3:6984424-6984443 Msa0100510:intron 45.0%
! AAGGGCAAGAAGCACAAAAG+TGG - chr1_3:6984425-6984444 Msa0100510:intron 45.0%
GAGGTTGTATCGCATGTGTT+CGG - chr1_3:6985628-6985647 None:intergenic 45.0%
TTCTAATGGTTCCTCCCTAC+CGG + chr1_3:6985902-6985921 Msa0100520:five_prime_UTR 45.0%
TGGAGGTGATAAAACCGGTA+GGG - chr1_3:6985919-6985938 None:intergenic 45.0%
TTGGAGGTGATAAAACCGGT+AGG - chr1_3:6985920-6985939 None:intergenic 45.0%
TACCTTTATGTGGTTGCCTC+AGG + chr1_3:6986413-6986432 Msa0100520:intron 45.0%
ATCCTGAGGCAACCACATAA+AGG - chr1_3:6986418-6986437 None:intergenic 45.0%
TGTAATCTACACAACGCCTC+TGG + chr1_3:6986497-6986516 Msa0100520:five_prime_UTR 45.0%
! GCAGTGATTCTCAAGGTGTT+TGG - chr1_3:6986564-6986583 None:intergenic 45.0%
AGAAGGATTGCCAACCATGA+TGG + chr1_3:6986706-6986725 Msa0100520:intron 45.0%
CACCAGAATTAGTAGCAGCA+GGG + chr1_3:6986776-6986795 Msa0100520:five_prime_UTR 45.0%
! GTCTTTTCCCAGAGAATGGA+CGG - chr1_3:6987221-6987240 None:intergenic 45.0%
AGAAGGGACGTTGTTGTGAT+CGG - chr1_3:6987439-6987458 None:intergenic 45.0%
GAGTAGAAAGAAGGAAAGGG+AGG - chr1_3:6987464-6987483 None:intergenic 45.0%
GAAGATGAAGAAGAAGGGGA+GGG - chr1_3:6987496-6987515 None:intergenic 45.0%
! ATCAGGTTTGGAGTTAGGGT+CGG - chr1_3:6987936-6987955 None:intergenic 45.0%
! CGGAATCAGGTTTGGAGTTA+GGG - chr1_3:6987940-6987959 None:intergenic 45.0%
! TCGGAATCAGGTTTGGAGTT+AGG - chr1_3:6987941-6987960 None:intergenic 45.0%
ATTAGGGTCGGAATCAGGTT+TGG - chr1_3:6987948-6987967 None:intergenic 45.0%
TGGTTATTAGGGTCGGAATC+AGG - chr1_3:6987953-6987972 None:intergenic 45.0%
! AGTTAGGTGTGGTTTGGAGT+TGG - chr1_3:6987973-6987992 None:intergenic 45.0%
AACTCCAAACCACACCTAAC+TGG + chr1_3:6987972-6987991 Msa0100520:CDS 45.0%
ATAGCGTTGTTGAGCCAGTT+AGG - chr1_3:6987989-6988008 None:intergenic 45.0%
! GTTGTTGTTGTCGGTGTAGT+GGG - chr1_3:6988020-6988039 None:intergenic 45.0%
! TGTTGTTGTTGTCGGTGTAG+TGG - chr1_3:6988021-6988040 None:intergenic 45.0%
CGATTACTTCACCGTGTTGA+CGG - chr1_3:6988168-6988187 None:intergenic 45.0%
AAGGATAACATCGACGGTGA+TGG + chr1_3:6988235-6988254 Msa0100520:CDS 45.0%
! ACCACCAAACGCAGAGTATT+TGG - chr1_3:6988473-6988492 None:intergenic 45.0%
! AAATACTCTGCGTTTGGTGG+TGG + chr1_3:6988472-6988491 Msa0100520:CDS 45.0%
! AATACTCTGCGTTTGGTGGT+GGG + chr1_3:6988473-6988492 Msa0100520:CDS 45.0%
GATGATTGCTCAAGTGGGAA+TGG + chr1_3:6988927-6988946 Msa0100520:intron 45.0%
GGAATGGATACTTGATGTGC+AGG + chr1_3:6988943-6988962 Msa0100520:intron 45.0%
GTGTGACTGCAACATCAAGA+AGG - chr1_3:6989406-6989425 None:intergenic 45.0%
ACATGTTCGTGTCCATGCAA+TGG + chr1_3:6989467-6989486 Msa0100520:CDS 45.0%
CCATTACAGCTTCCATTGCA+TGG - chr1_3:6989482-6989501 None:intergenic 45.0%
CCATGCAATGGAAGCTGTAA+TGG + chr1_3:6989479-6989498 Msa0100520:CDS 45.0%
! TGGAAGCTGTAATGGCTTGT+TGG + chr1_3:6989487-6989506 Msa0100520:CDS 45.0%
!! GGAAGCTGTAATGGCTTGTT+GGG + chr1_3:6989488-6989507 Msa0100520:CDS 45.0%
! GGTACCTGTTAGGCTTTGTA+AGG - chr1_3:6989526-6989545 None:intergenic 45.0%
TTGATATGCGGACACGATGT+TGG - chr1_3:6989875-6989894 None:intergenic 45.0%
TTAGACCACACAAGGCTGTA+AGG + chr1_3:6989940-6989959 Msa0100520:intron 45.0%
! TAAGACCTTACAGCCTTGTG+TGG - chr1_3:6989948-6989967 None:intergenic 45.0%
AGTGACGCAAATCTGTTCGA+TGG + chr1_3:6990163-6990182 Msa0100520:CDS 45.0%
!!! TGGTAGTTTTGATGGTGGTG+CGG + chr1_3:6990183-6990202 Msa0100520:CDS 45.0%
AGGGACCTTTCATTCTCTGT+TGG - chr1_3:6990235-6990254 None:intergenic 45.0%
CTTGTCTTACACGCTCCATT+AGG - chr1_3:6990255-6990274 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG + chr1_3:6990425-6990444 Msa0100520:CDS 45.0%
! TTTTACGCAAGAGACGAGCT+GGG + chr1_3:6990426-6990445 Msa0100520:CDS 45.0%
CAACTTCTGTCCTTAAGGCT+TGG + chr1_3:6990465-6990484 Msa0100520:CDS 45.0%
TACTGTTGGATATGGCCACT+TGG - chr1_3:6990504-6990523 None:intergenic 45.0%
GGAGGAAGATAAAGCAAGGT+TGG + chr1_3:6990718-6990737 Msa0100520:intron 45.0%
!! AGATAAAGCAAGGTTGGTGC+AGG + chr1_3:6990724-6990743 Msa0100520:CDS 45.0%
CCACTAATCTTAGGGGAGTT+TGG - chr1_3:6990898-6990917 None:intergenic 45.0%
CCAAACTCCCCTAAGATTAG+TGG + chr1_3:6990895-6990914 Msa0100520:three_prime_UTR 45.0%
ACGCCTTCAATCTGTAGTGT+TGG - chr1_3:6991036-6991055 None:intergenic 45.0%
TGACGATGATACGTAGACAC+TGG - chr1_3:6991140-6991159 None:intergenic 45.0%
GTGTCTGTGTCAATGCTTCA+TGG + chr1_3:6991165-6991184 Msa0100520:three_prime_UTR 45.0%
!! ATATGTAATATAAAATAAAA+AGG - chr1_3:6984826-6984845 None:intergenic 5.0%
! GGGGGGTGTATGTCTAAAAC+AGG - chr1_3:6983147-6983166 Msa0100510:three_prime_UTR 50.0%
GGGAGAGGAAATAACCCGTT+TGG - chr1_3:6983213-6983232 Msa0100510:three_prime_UTR 50.0%
! TGAGGTACTTTAGGCCAAGG+AGG - chr1_3:6983335-6983354 Msa0100510:CDS 50.0%
AGGTGATAAAACCGGTAGGG+AGG - chr1_3:6985916-6985935 None:intergenic 50.0%
CAACACACCAAGAGTCCAGA+AGG - chr1_3:6986044-6986063 None:intergenic 50.0%
AATCTACACAACGCCTCTGG+AGG + chr1_3:6986500-6986519 Msa0100520:five_prime_UTR 50.0%
TCACATGCTTTCTGGGTTGC+TGG + chr1_3:6986538-6986557 Msa0100520:five_prime_UTR 50.0%
GCACCAGAATTAGTAGCAGC+AGG + chr1_3:6986775-6986794 Msa0100520:five_prime_UTR 50.0%
TGCCCTGCTGCTACTAATTC+TGG - chr1_3:6986781-6986800 None:intergenic 50.0%
TTAGCAGCAGCAGAGCAAGA+GGG + chr1_3:6986805-6986824 Msa0100520:five_prime_UTR 50.0%
GAAGGAAAGGGAGGGAAGAA+GGG - chr1_3:6987455-6987474 None:intergenic 50.0%
AGAAGGAAAGGGAGGGAAGA+AGG - chr1_3:6987456-6987475 None:intergenic 50.0%
AAGAAGGGGAGGGTAGAATG+TGG - chr1_3:6987486-6987505 None:intergenic 50.0%
GGAAGATGAAGAAGAAGGGG+AGG - chr1_3:6987497-6987516 None:intergenic 50.0%
GTCGGGTGAGTCTGGTAATA+TGG - chr1_3:6987918-6987937 None:intergenic 50.0%
! TCAGGTTTGGAGTTAGGGTC+GGG - chr1_3:6987935-6987954 None:intergenic 50.0%
TGAGCCAGTTAGGTGTGGTT+TGG - chr1_3:6987979-6987998 None:intergenic 50.0%
GTTGTTGAGCCAGTTAGGTG+TGG - chr1_3:6987984-6988003 None:intergenic 50.0%
GACGTTACCAACGACACTGA+CGG + chr1_3:6988055-6988074 Msa0100520:CDS 50.0%
ACCAACGACACTGACGGTAA+CGG + chr1_3:6988061-6988080 Msa0100520:CDS 50.0%
!! CGGTGTCGGAAGTTTGTTGA+AGG - chr1_3:6988105-6988124 None:intergenic 50.0%
TCGATTCTCCACCGTCAACA+CGG + chr1_3:6988154-6988173 Msa0100520:CDS 50.0%
! TTACTTCACCGTGTTGACGG+TGG - chr1_3:6988165-6988184 None:intergenic 50.0%
ATCGACAACGTTACCATGGC+CGG + chr1_3:6988184-6988203 Msa0100520:CDS 50.0%
!! AACATCGACGGTGATGGACT+TGG + chr1_3:6988241-6988260 Msa0100520:CDS 50.0%
!! ACATCGACGGTGATGGACTT+GGG + chr1_3:6988242-6988261 Msa0100520:CDS 50.0%
!! TGGATTGGTGAACTGGCAGA+TGG + chr1_3:6988306-6988325 Msa0100520:CDS 50.0%
! GGATTGGTGAACTGGCAGAT+GGG + chr1_3:6988307-6988326 Msa0100520:CDS 50.0%
GATTGGTGAACTGGCAGATG+GGG + chr1_3:6988308-6988327 Msa0100520:CDS 50.0%
ACAGTTGTTGTCGGCACATG+TGG + chr1_3:6988369-6988388 Msa0100520:CDS 50.0%
GTGTTTGAGGATAGCAACGC+CGG + chr1_3:6988393-6988412 Msa0100520:CDS 50.0%
ATCCTCGGTAACTGATCCAC+CGG - chr1_3:6988415-6988434 None:intergenic 50.0%
AGCACAGTCTCAGAATGTGG+TGG + chr1_3:6988447-6988466 Msa0100520:CDS 50.0%
GTGGCCAAATACTCTGCGTT+TGG + chr1_3:6988466-6988485 Msa0100520:CDS 50.0%
GCCAAATACTCTGCGTTTGG+TGG + chr1_3:6988469-6988488 Msa0100520:CDS 50.0%
!! ATACTCTGCGTTTGGTGGTG+GGG + chr1_3:6988474-6988493 Msa0100520:CDS 50.0%
ATGAGAAATCATGGGGGTGG+AGG + chr1_3:6988976-6988995 Msa0100520:intron 50.0%
TGAGAAATCATGGGGGTGGA+GGG + chr1_3:6988977-6988996 Msa0100520:intron 50.0%
AAGGCTGTAAGGTCTTAGCG+TGG + chr1_3:6989951-6989970 Msa0100520:intron 50.0%
GAAAGTCTTAGGCCTCAAGC+TGG + chr1_3:6989982-6990001 Msa0100520:intron 50.0%
GCATGAACAGGAGTTTCACC+CGG + chr1_3:6990091-6990110 Msa0100520:intron 50.0%
! TTTCACCCGGAGAAGGTACA+GGG + chr1_3:6990104-6990123 Msa0100520:CDS 50.0%
GTCTGACGACGAAGATGAAC+AGG + chr1_3:6990135-6990154 Msa0100520:CDS 50.0%
!! TGATGGTGGTGCGGATAACA+TGG + chr1_3:6990192-6990211 Msa0100520:CDS 50.0%
! GATGGTGGTGCGGATAACAT+GGG + chr1_3:6990193-6990212 Msa0100520:CDS 50.0%
GGTGCGGATAACATGGGATT+TGG + chr1_3:6990199-6990218 Msa0100520:CDS 50.0%
AGGACAGAAGTTGTGTCACC+AGG - chr1_3:6990458-6990477 None:intergenic 50.0%
CTTCTGTCCTTAAGGCTTGG+TGG + chr1_3:6990468-6990487 Msa0100520:CDS 50.0%
GTGATTGCCACCAAGCCTTA+AGG - chr1_3:6990478-6990497 None:intergenic 50.0%
GGTGGCAATCACATTCCAAG+TGG + chr1_3:6990486-6990505 Msa0100520:CDS 50.0%
CACTGACGCCCTTCTTGTTA+AGG + chr1_3:6990924-6990943 Msa0100520:three_prime_UTR 50.0%
! ATGCGGTGGAAAGGAGGCAT+CGG - chr1_3:6983296-6983315 Msa0100510:CDS 55.0%
GCCTCAGGATTCCCATAAGC+TGG + chr1_3:6986428-6986447 Msa0100520:intron 55.0%
GCCAGCTTATGGGAATCCTG+AGG - chr1_3:6986432-6986451 None:intergenic 55.0%
GTTAGCAGCAGCAGAGCAAG+AGG + chr1_3:6986804-6986823 Msa0100520:five_prime_UTR 55.0%
AGCAGCAGAGCAAGAGGGTA+TGG + chr1_3:6986810-6986829 Msa0100520:five_prime_UTR 55.0%
! AGCAGAGCAAGAGGGTATGG+AGG + chr1_3:6986813-6986832 Msa0100520:five_prime_UTR 55.0%
!! TGTCGGTGTAGTGGGTACGA+AGG - chr1_3:6988012-6988031 None:intergenic 55.0%
TCCGTTACCGTCAGTGTCGT+TGG - chr1_3:6988065-6988084 None:intergenic 55.0%
! CCATTGACCGGTGGTTTGCA+CGG - chr1_3:6988125-6988144 None:intergenic 55.0%
GTGTTCTACTTCTCCGGCCA+TGG - chr1_3:6988200-6988219 None:intergenic 55.0%
!! CATCGACGGTGATGGACTTG+GGG + chr1_3:6988243-6988262 Msa0100520:CDS 55.0%
!! ATCGACGGTGATGGACTTGG+GGG + chr1_3:6988244-6988263 Msa0100520:CDS 55.0%
!! GAGGAGCTGGATTGGTGAAC+TGG + chr1_3:6988299-6988318 Msa0100520:CDS 55.0%
GAGGTGGAAGGCGGAGATAA+TGG + chr1_3:6988330-6988349 Msa0100520:CDS 55.0%
TTTGAGGATAGCAACGCCGG+TGG + chr1_3:6988396-6988415 Msa0100520:CDS 55.0%
GGGTGGGATTAGACCACACA+AGG + chr1_3:6989932-6989951 Msa0100520:intron 55.0%
ACAGGAGTTTCACCCGGAGA+AGG + chr1_3:6990097-6990116 Msa0100520:intron 55.0%
! GTTTCACCCGGAGAAGGTAC+AGG + chr1_3:6990103-6990122 Msa0100520:CDS 55.0%
! TTCACCCGGAGAAGGTACAG+GGG + chr1_3:6990105-6990124 Msa0100520:CDS 55.0%
TGTTGCCCCTGTACCTTCTC+CGG - chr1_3:6990113-6990132 None:intergenic 55.0%
AGACGAGCTGGGAAACTTCC+TGG + chr1_3:6990437-6990456 Msa0100520:CDS 55.0%
!! GCAAGGTTGGTGCAGGAAAC+TGG + chr1_3:6990731-6990750 Msa0100520:CDS 55.0%
!! AAGGAGGCATCGGCGCTCAA+GGG - chr1_3:6983286-6983305 Msa0100510:CDS 60.0%
!! AAAGGAGGCATCGGCGCTCA+AGG - chr1_3:6983287-6983306 Msa0100510:CDS 60.0%
AAACTCGACGGTGCATGCGG+TGG - chr1_3:6983310-6983329 Msa0100510:CDS 60.0%
ACCGCATGCACCGTCGAGTT+TGG + chr1_3:6983309-6983328 Msa0100520:five_prime_UTR 60.0%
GCCAAACTCGACGGTGCATG+CGG - chr1_3:6983313-6983332 Msa0100510:CDS 60.0%
ACCGTCGAGTTTGGCCTCCT+TGG + chr1_3:6983318-6983337 Msa0100520:five_prime_UTR 60.0%
GCCAAGGAGGCCAAACTCGA+CGG - chr1_3:6983322-6983341 Msa0100510:CDS 60.0%
ACCGGTGCCCCTACCATGAA+AGG + chr1_3:6984302-6984321 Msa0100520:intron 60.0%
! CCCTTTCATGGTAGGGGCAC+CGG - chr1_3:6984306-6984325 Msa0100510:intron 60.0%
CCGGTGCCCCTACCATGAAA+GGG + chr1_3:6984303-6984322 Msa0100520:intron 60.0%
GAGTTAGGGTCGGGTGAGTC+TGG - chr1_3:6987926-6987945 None:intergenic 60.0%
TCCGACACCGTGCAAACCAC+CGG + chr1_3:6988115-6988134 Msa0100520:CDS 60.0%
! ACCGGTGGTTTGCACGGTGT+CGG - chr1_3:6988119-6988138 None:intergenic 60.0%
CCGTGCAAACCACCGGTCAA+TGG + chr1_3:6988122-6988141 Msa0100520:CDS 60.0%
! CCACCGGTCAATGGCTTGCA+CGG + chr1_3:6988131-6988150 Msa0100520:CDS 60.0%
CGACCGTGCAAGCCATTGAC+CGG - chr1_3:6988137-6988156 None:intergenic 60.0%
!! TCGACGGTGATGGACTTGGG+GGG + chr1_3:6988245-6988264 Msa0100520:CDS 60.0%
TGGACTTGGGGGGAAGAGTG+AGG + chr1_3:6988255-6988274 Msa0100520:CDS 60.0%
ACTTGGGGGGAAGAGTGAGG+TGG + chr1_3:6988258-6988277 Msa0100520:CDS 60.0%
! AAGAGTGAGGTGGCGGTGGA+TGG + chr1_3:6988268-6988287 Msa0100520:CDS 60.0%
AGACGGAGGAGGAGCTGGAT+TGG + chr1_3:6988291-6988310 Msa0100520:CDS 60.0%
TGGTGAACTGGCAGATGGGG+AGG + chr1_3:6988311-6988330 Msa0100520:CDS 60.0%
TGAACTGGCAGATGGGGAGG+TGG + chr1_3:6988314-6988333 Msa0100520:CDS 60.0%
CGGCACATGTGGCGTGTTTG+AGG + chr1_3:6988380-6988399 Msa0100520:CDS 60.0%
GTTGCCCCTGTACCTTCTCC+GGG - chr1_3:6990112-6990131 None:intergenic 60.0%
!! AGGCATCGGCGCTCAAGGGA+GGG - chr1_3:6983282-6983301 Msa0100510:CDS 65.0%
CGGTGCATGCGGTGGAAAGG+AGG - chr1_3:6983302-6983321 Msa0100510:CDS 65.0%
CGACGGTGCATGCGGTGGAA+AGG - chr1_3:6983305-6983324 Msa0100510:CDS 65.0%
!! TGGTAGGGGCACCGGTTAGC+AGG - chr1_3:6984298-6984317 Msa0100510:intron 65.0%
CCGTGCAAGCCATTGACCGG+TGG - chr1_3:6988134-6988153 None:intergenic 65.0%
TGGGGGGAAGAGTGAGGTGG+CGG + chr1_3:6988261-6988280 Msa0100520:CDS 65.0%
! GAGGTGGCGGTGGATGGAGA+CGG + chr1_3:6988274-6988293 Msa0100520:CDS 65.0%
GATGGAGACGGAGGAGGAGC+TGG + chr1_3:6988286-6988305 Msa0100520:CDS 65.0%
CTGGCAGATGGGGAGGTGGA+AGG + chr1_3:6988318-6988337 Msa0100520:CDS 65.0%
GCAGATGGGGAGGTGGAAGG+CGG + chr1_3:6988321-6988340 Msa0100520:CDS 65.0%
CGCCGGTGGATCAGTTACCG+AGG + chr1_3:6988410-6988429 Msa0100520:CDS 65.0%
!! GAGGCATCGGCGCTCAAGGG+AGG - chr1_3:6983283-6983302 Msa0100510:CDS 70.0%
! GGGGAAGAGTGAGGTGGCGG+TGG + chr1_3:6988264-6988283 Msa0100520:CDS 70.0%
GTGGCGGTGGATGGAGACGG+AGG + chr1_3:6988277-6988296 Msa0100520:CDS 70.0%
GCGGTGGATGGAGACGGAGG+AGG + chr1_3:6988280-6988299 Msa0100520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 6982947 6991699 6982947 ID=Msa0100520;Name=Msa0100520
chr1_3 mRNA 6982947 6991699 6982947 ID=Msa0100520-mRNA-1;Parent=Msa0100520;Name=Msa0100520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1969|1|1|1|0.44|0.4|10|831|433
chr1_3 exon 6982947 6983527 6982947 ID=Msa0100520-mRNA-1:exon:2713;Parent=Msa0100520-mRNA-1
chr1_3 exon 6983866 6983887 6983866 ID=Msa0100520-mRNA-1:exon:2714;Parent=Msa0100520-mRNA-1
chr1_3 exon 6984179 6984241 6984179 ID=Msa0100520-mRNA-1:exon:2715;Parent=Msa0100520-mRNA-1
chr1_3 exon 6985868 6985952 6985868 ID=Msa0100520-mRNA-1:exon:2716;Parent=Msa0100520-mRNA-1
chr1_3 exon 6986435 6986585 6986435 ID=Msa0100520-mRNA-1:exon:2717;Parent=Msa0100520-mRNA-1
chr1_3 exon 6986757 6988525 6986757 ID=Msa0100520-mRNA-1:exon:2718;Parent=Msa0100520-mRNA-1
chr1_3 exon 6989420 6989540 6989420 ID=Msa0100520-mRNA-1:exon:2719;Parent=Msa0100520-mRNA-1
chr1_3 exon 6990101 6990297 6990101 ID=Msa0100520-mRNA-1:exon:2720;Parent=Msa0100520-mRNA-1
chr1_3 exon 6990389 6990520 6990389 ID=Msa0100520-mRNA-1:exon:2721;Parent=Msa0100520-mRNA-1
chr1_3 exon 6990719 6991699 6990719 ID=Msa0100520-mRNA-1:exon:2722;Parent=Msa0100520-mRNA-1
chr1_3 five_prime_UTR 6982947 6983527 6982947 ID=Msa0100520-mRNA-1:five_prime_utr;Parent=Msa0100520-mRNA-1
chr1_3 five_prime_UTR 6983866 6983887 6983866 ID=Msa0100520-mRNA-1:five_prime_utr;Parent=Msa0100520-mRNA-1
chr1_3 five_prime_UTR 6984179 6984241 6984179 ID=Msa0100520-mRNA-1:five_prime_utr;Parent=Msa0100520-mRNA-1
chr1_3 five_prime_UTR 6985868 6985952 6985868 ID=Msa0100520-mRNA-1:five_prime_utr;Parent=Msa0100520-mRNA-1
chr1_3 five_prime_UTR 6986435 6986585 6986435 ID=Msa0100520-mRNA-1:five_prime_utr;Parent=Msa0100520-mRNA-1
chr1_3 five_prime_UTR 6986757 6987823 6986757 ID=Msa0100520-mRNA-1:five_prime_utr;Parent=Msa0100520-mRNA-1
chr1_3 CDS 6987824 6988525 6987824 ID=Msa0100520-mRNA-1:cds;Parent=Msa0100520-mRNA-1
chr1_3 CDS 6989420 6989540 6989420 ID=Msa0100520-mRNA-1:cds;Parent=Msa0100520-mRNA-1
chr1_3 CDS 6990101 6990297 6990101 ID=Msa0100520-mRNA-1:cds;Parent=Msa0100520-mRNA-1
chr1_3 CDS 6990389 6990520 6990389 ID=Msa0100520-mRNA-1:cds;Parent=Msa0100520-mRNA-1
chr1_3 CDS 6990719 6990868 6990719 ID=Msa0100520-mRNA-1:cds;Parent=Msa0100520-mRNA-1
chr1_3 three_prime_UTR 6990869 6991699 6990869 ID=Msa0100520-mRNA-1:three_prime_utr;Parent=Msa0100520-mRNA-1
Gene Sequence

>Msa0100520

ATGGCTTACCAAAACCAACATCTTTCACAAGAGTTGCCAATCCAACATTTCACAGACCAAACCAACAACAATAACAACAACTCATTTCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAATAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCTATCCTTCGTACCCACTACACCGACAACAACAACAACAACAATAACAACGACGTTACCAACGACACTGACGGTAACGGAGCTTCTAATTTTCTAAACCTTCAACAAACTTCCGACACCGTGCAAACCACCGGTCAATGGCTTGCACGGTCGATTCTCCACCGTCAACACGGTGAAGTAATCGACAACGTTACCATGGCCGGAGAAGTAGAACACGAGTTAAGTAATATGAAGGATAACATCGACGGTGATGGACTTGGGGGGAAGAGTGAGGTGGCGGTGGATGGAGACGGAGGAGGAGCTGGATTGGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATAATGGCACATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACGCCGGTGGATCAGTTACCGAGGATTGATGCTCAGTTAGCACAGTCTCAGAATGTGGTGGCCAAATACTCTGCGTTTGGTGGTGGGGTAGATGACAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGCCTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCAACAATGTCTGACGACGAAGATGAACAGGTAGATAGTGACGCAAATCTGTTCGATGGTAGTTTTGATGGTGGTGCGGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCCCTAATGGAGCGTGTAAGACAAGAGCTTAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAACGCAAAAGGTCTCAAAACTAG
Protein sequence

>Msa0100520

MAYQNQHLSQELPIQHFTDQTNNNNNNSFRSILPDSPDPNSKPDSDPNNQLQTTPNWLNNAILRTHYTDNNNNNNNNDVTNDTDGNGASNFLNLQQTSDTVQTTGQWLARSILHRQHGEVIDNVTMAGEVEHELSNMKDNIDGDGLGGKSEVAVDGDGGGAGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGGGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN*