AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264140 MtrunA17_Chr4g0074351 97.024 168 5 0 1 168 1 168 9.96e-122 340
Msa1264140 MtrunA17_Chr4g0074361 81.761 159 29 0 10 168 32 190 6.45e-96 275
Msa1264140 MtrunA17_Chr4g0074341 77.439 164 37 0 5 168 103 266 2.01e-94 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264140 AT5G58070.1 76.970 165 38 0 4 168 2 166 1.19e-92 267

Find 83 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTGGCTTCATCACTTT+TGG 0.137021 8_2:-67516904 None:intergenic
GTTATTGCTTCCTCTATTTC+AGG 0.192532 8_2:-67516635 None:intergenic
TATTTATTTATTTCACAAAA+AGG 0.258019 8_2:-67517952 None:intergenic
ATTGATTCATATTAGAGTTC+TGG 0.264894 8_2:-67518063 None:intergenic
TTCCTGCTGTTGGAGATTAC+TGG 0.269337 8_2:+67516964 Msa1264140:CDS
CTTATAAGCACTTCCTTCTA+TGG 0.269670 8_2:-67516874 None:intergenic
GGCCTACCAATAAATATCTA+TGG 0.270272 8_2:+67517030 Msa1264140:CDS
CATAGAAGGAAGTGCTTATA+AGG 0.280018 8_2:+67516875 Msa1264140:CDS
GCTTACCCATAGATATTTAT+TGG 0.283517 8_2:-67517036 None:intergenic
TAATATGAATCAATTTAGTT+TGG 0.296555 8_2:+67518072 Msa1264140:three_prime_UTR
AAGATATTCAACAACGAAAA+AGG 0.302914 8_2:-67518252 None:intergenic
TCTCCAACAGCAGGAATAAT+TGG 0.308299 8_2:-67516957 None:intergenic
CCTCCACCTGAGTAAGATTA+AGG 0.321912 8_2:+67517911 Msa1264140:exon
TGTAGATTGCTTCATCCAAA+TGG 0.401693 8_2:-67517817 None:intergenic
ATGGCTGATGTGGAAAGATA+TGG 0.403552 8_2:+67518337 Msa1264140:three_prime_UTR
ACTATGCAGGCAACCCCATT+TGG 0.413202 8_2:+67517802 Msa1264140:CDS
TTTGTTAGCACTTATCAGAT+TGG 0.413995 8_2:-67516578 None:intergenic
GATCTAGTAGTCGTAGATAA+AGG 0.424602 8_2:-67518305 None:intergenic
TGATATTCTACAGCAGAGAT+TGG 0.436166 8_2:+67518217 Msa1264140:three_prime_UTR
GTAGATTGCTTCATCCAAAT+GGG 0.436253 8_2:-67517816 None:intergenic
TTTGATACTGAAATTGTGTA+AGG 0.436553 8_2:+67518160 Msa1264140:three_prime_UTR
GGTAAAAGAACCTCCATAGA+AGG 0.443815 8_2:+67516861 Msa1264140:CDS
GGTTGTGAAGGGTGTAGACT+TGG 0.444182 8_2:+67516701 Msa1264140:CDS
ATAGAATTTAACCTTGAGCT+TGG 0.456530 8_2:-67516919 None:intergenic
GAAGGACAAGGAGGTTGTGA+AGG 0.458131 8_2:+67516689 Msa1264140:CDS
GTAAATTGCAATGCGTGTAT+TGG 0.459376 8_2:+67518103 Msa1264140:three_prime_UTR
AATAAATAAATAAATAGTTA+TGG 0.459465 8_2:+67517971 Msa1264140:three_prime_UTR
GATTATCAATATGCTCTCAT+TGG 0.460982 8_2:+67517005 Msa1264140:CDS
TTGCCAATTATTCCTGCTGT+TGG 0.461126 8_2:+67516954 Msa1264140:CDS
TTCATTCATAATCATTGTTG+TGG 0.461646 8_2:+67518370 Msa1264140:three_prime_UTR
GCAGGAATAATTGGCAAGAA+TGG 0.465330 8_2:-67516948 None:intergenic
ATGAAGTGTATTATGTAATC+AGG 0.473308 8_2:+67518001 Msa1264140:three_prime_UTR
CCTTAGCTTTCTCAACAAGC+TGG 0.479647 8_2:-67517841 None:intergenic
CACTCTACACATGGCTGATG+TGG 0.483087 8_2:+67518327 Msa1264140:three_prime_UTR
TAAACAAACTATAGATAAGT+TGG 0.483562 8_2:+67518135 Msa1264140:three_prime_UTR
CAAGAAACATTAAAAGTTCG+CGG 0.487268 8_2:-67518536 None:intergenic
TTCATGTTCTCAATGAGACT+TGG 0.488210 8_2:+67516832 Msa1264140:CDS
GTTGAGAAAGCTAAGGAAGA+AGG 0.488479 8_2:+67517848 Msa1264140:CDS
CGTAGATAAAGGATAAATCA+TGG 0.492460 8_2:-67518294 None:intergenic
AGGAGTTGTTAACTTATTGT+TGG 0.497861 8_2:+67518180 Msa1264140:three_prime_UTR
TGTAGACTTGGAGAGGTACA+TGG 0.499697 8_2:+67516713 Msa1264140:CDS
CAGATTGGAGTAACTTTCCA+AGG 0.509623 8_2:-67516563 None:intergenic
CATATTGATAATCTTGATCA+AGG 0.510400 8_2:-67516995 None:intergenic
TGTCTCTCTACCTGAAATAG+AGG 0.512104 8_2:+67516625 Msa1264140:five_prime_UTR
ATCCAGTAATCTCCAACAGC+AGG 0.514048 8_2:-67516966 None:intergenic
TATCAATATGCTCTCATTGG+TGG 0.520368 8_2:+67517008 Msa1264140:CDS
ATCAATATGCTCTCATTGGT+GGG 0.522349 8_2:+67517009 Msa1264140:CDS
AAGGACAAGGAGGTTGTGAA+GGG 0.527129 8_2:+67516690 Msa1264140:CDS
ACCCATAGATATTTATTGGT+AGG 0.528773 8_2:-67517032 None:intergenic
GCCTACCAATAAATATCTAT+GGG 0.548969 8_2:+67517031 Msa1264140:CDS
CAATATAATAGAACAGAACA+AGG 0.549215 8_2:-67516602 None:intergenic
TTGGTCCCTAGATACTATGC+AGG 0.558593 8_2:+67517789 Msa1264140:intron
ACAAAACACAAAGAAAACCT+TGG 0.558934 8_2:+67516546 None:intergenic
TGAGGACCTTAATCTTACTC+AGG 0.562281 8_2:-67517917 None:intergenic
ACATACACTCTCAACAGTGA+TGG 0.564431 8_2:+67516804 Msa1264140:CDS
ATAAGCACTTCCTTCTATGG+AGG 0.564915 8_2:-67516871 None:intergenic
AACCTCCTTGTCCTTCCCTA+CGG 0.565364 8_2:-67516682 None:intergenic
CCTTAATCTTACTCAGGTGG+AGG 0.569308 8_2:-67517911 None:intergenic
ATCACTGTTGAGAGTGTATG+TGG 0.583825 8_2:-67516802 None:intergenic
GGAATAATTGGCAAGAATGG+AGG 0.591527 8_2:-67516945 None:intergenic
ATAAATCATGGGATCCCCAC+TGG 0.593383 8_2:-67518282 None:intergenic
AATGGGAAACACCGTAGGGA+AGG 0.597163 8_2:+67516671 Msa1264140:exon
GTAGATAAAGGATAAATCAT+GGG 0.597389 8_2:-67518293 None:intergenic
AAGTGATGAAGCCAAGCTCA+AGG 0.599556 8_2:+67516908 Msa1264140:CDS
CATACACTCTCAACAGTGAT+GGG 0.600831 8_2:+67516805 Msa1264140:CDS
GGACCTTAATCTTACTCAGG+TGG 0.603353 8_2:-67517914 None:intergenic
CTACTAGATCACTCTACACA+TGG 0.604555 8_2:+67518318 Msa1264140:three_prime_UTR
TGGCTGATGTGGAAAGATAT+GGG 0.613888 8_2:+67518338 Msa1264140:three_prime_UTR
TGATGTGGAAAGATATGGGT+AGG 0.614524 8_2:+67518342 Msa1264140:three_prime_UTR
TAGATTGCTTCATCCAAATG+GGG 0.620741 8_2:-67517815 None:intergenic
ACTTGGAGAGGTACATGGGT+AGG 0.635238 8_2:+67516718 Msa1264140:CDS
CCAGCTTGTTGAGAAAGCTA+AGG 0.636813 8_2:+67517841 Msa1264140:CDS
AGTTTGATAATCAATTCACA+TGG 0.640563 8_2:+67518404 Msa1264140:three_prime_UTR
CTCAATGAGACTTGGAATGG+TGG 0.645948 8_2:+67516840 Msa1264140:CDS
GTAGACTTGGAGAGGTACAT+GGG 0.653419 8_2:+67516714 Msa1264140:CDS
TGAAGGGTGTAGACTTGGAG+AGG 0.655962 8_2:+67516706 Msa1264140:CDS
GATGTGGAAAGATATGGGTA+GGG 0.656593 8_2:+67518343 Msa1264140:three_prime_UTR
TGGAGAGGTACATGGGTAGG+TGG 0.656685 8_2:+67516721 Msa1264140:CDS
TCAGGTGGAGGATCACTCTG+TGG 0.704206 8_2:-67517899 None:intergenic
CACCGTAGGGAAGGACAAGG+AGG 0.708944 8_2:+67516680 Msa1264140:CDS
GTTCTCAATGAGACTTGGAA+TGG 0.711280 8_2:+67516837 Msa1264140:CDS
AATATAATAGAACAGAACAA+GGG 0.719173 8_2:-67516601 None:intergenic
AAACACCGTAGGGAAGGACA+AGG 0.745653 8_2:+67516677 Msa1264140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAAAATTGTTTTATTTA+AGG + chr8_2:67517399-67517418 Msa1264140:intron 10.0%
!! TATTTATTTATTTCACAAAA+AGG - chr8_2:67517955-67517974 None:intergenic 10.0%
!!! ACTAAAAATTGTTTTATTTA+AGG + chr8_2:67517399-67517418 Msa1264140:intron 10.0%
!! TATTTATTTATTTCACAAAA+AGG - chr8_2:67517955-67517974 None:intergenic 10.0%
!! AATTTAACAAGAAAAAGATA+GGG - chr8_2:67517064-67517083 None:intergenic 15.0%
!! TAATTTAACAAGAAAAAGAT+AGG - chr8_2:67517065-67517084 None:intergenic 15.0%
!!! TATCTTTTTCTTGTTAAATT+AGG + chr8_2:67517064-67517083 Msa1264140:intron 15.0%
!! TAAAATATAATCACATGTAT+GGG - chr8_2:67517112-67517131 None:intergenic 15.0%
!! ATAAAATATAATCACATGTA+TGG - chr8_2:67517113-67517132 None:intergenic 15.0%
!!! TAATTTCAAGTCAAAAATAA+AGG + chr8_2:67518036-67518055 Msa1264140:three_prime_UTR 15.0%
!! TAATATGAATCAATTTAGTT+TGG + chr8_2:67518072-67518091 Msa1264140:three_prime_UTR 15.0%
!! AATTTAACAAGAAAAAGATA+GGG - chr8_2:67517064-67517083 None:intergenic 15.0%
!! TAATTTAACAAGAAAAAGAT+AGG - chr8_2:67517065-67517084 None:intergenic 15.0%
!!! TATCTTTTTCTTGTTAAATT+AGG + chr8_2:67517064-67517083 Msa1264140:intron 15.0%
!! TAAAATATAATCACATGTAT+GGG - chr8_2:67517112-67517131 None:intergenic 15.0%
!! ATAAAATATAATCACATGTA+TGG - chr8_2:67517113-67517132 None:intergenic 15.0%
!!! TAATTTCAAGTCAAAAATAA+AGG + chr8_2:67518036-67518055 Msa1264140:three_prime_UTR 15.0%
!! TAATATGAATCAATTTAGTT+TGG + chr8_2:67518072-67518091 Msa1264140:three_prime_UTR 15.0%
!! AATATAATAGAACAGAACAA+GGG - chr8_2:67516604-67516623 None:intergenic 20.0%
!! AAAATAATCCAAGTTATTGT+AGG - chr8_2:67517771-67517790 None:intergenic 20.0%
!!! TACAATAACTTGGATTATTT+TGG + chr8_2:67517770-67517789 Msa1264140:intron 20.0%
!! TAAACAAACTATAGATAAGT+TGG + chr8_2:67518135-67518154 Msa1264140:three_prime_UTR 20.0%
!! AATATAATAGAACAGAACAA+GGG - chr8_2:67516604-67516623 None:intergenic 20.0%
!! AAAATAATCCAAGTTATTGT+AGG - chr8_2:67517771-67517790 None:intergenic 20.0%
!!! TACAATAACTTGGATTATTT+TGG + chr8_2:67517770-67517789 Msa1264140:intron 20.0%
!! TAAACAAACTATAGATAAGT+TGG + chr8_2:67518135-67518154 Msa1264140:three_prime_UTR 20.0%
! CAATATAATAGAACAGAACA+AGG - chr8_2:67516605-67516624 None:intergenic 25.0%
! ATAACATCCACAACAAAAAA+TGG + chr8_2:67516653-67516672 Msa1264140:exon 25.0%
! TAACATCCACAACAAAAAAT+GGG + chr8_2:67516654-67516673 Msa1264140:exon 25.0%
!! CATATTGATAATCTTGATCA+AGG - chr8_2:67516998-67517017 None:intergenic 25.0%
!! GAGAAAAAAAAGATTAGTTG+TGG + chr8_2:67517201-67517220 Msa1264140:intron 25.0%
!! TTGACTTCTAAGAAAAATTG+TGG + chr8_2:67517226-67517245 Msa1264140:intron 25.0%
!!! CTTTAAGTTTTAGTTTTGTC+AGG + chr8_2:67517655-67517674 Msa1264140:intron 25.0%
! ATGAAGTGTATTATGTAATC+AGG + chr8_2:67518001-67518020 Msa1264140:three_prime_UTR 25.0%
!! ATTGATTCATATTAGAGTTC+TGG - chr8_2:67518066-67518085 None:intergenic 25.0%
! TTTGATACTGAAATTGTGTA+AGG + chr8_2:67518160-67518179 Msa1264140:three_prime_UTR 25.0%
! AAGATATTCAACAACGAAAA+AGG - chr8_2:67518255-67518274 None:intergenic 25.0%
! GTAGATAAAGGATAAATCAT+GGG - chr8_2:67518296-67518315 None:intergenic 25.0%
! TTCATTCATAATCATTGTTG+TGG + chr8_2:67518370-67518389 Msa1264140:three_prime_UTR 25.0%
!! AGTTTGATAATCAATTCACA+TGG + chr8_2:67518404-67518423 Msa1264140:three_prime_UTR 25.0%
!! AATCAATTCACATGGTTTTT+CGG + chr8_2:67518412-67518431 Msa1264140:three_prime_UTR 25.0%
!!! AAAAAGAAGCGTTACAAAAA+AGG - chr8_2:67518515-67518534 None:intergenic 25.0%
! CAATATAATAGAACAGAACA+AGG - chr8_2:67516605-67516624 None:intergenic 25.0%
! ATAACATCCACAACAAAAAA+TGG + chr8_2:67516653-67516672 Msa1264140:exon 25.0%
! TAACATCCACAACAAAAAAT+GGG + chr8_2:67516654-67516673 Msa1264140:exon 25.0%
!! CATATTGATAATCTTGATCA+AGG - chr8_2:67516998-67517017 None:intergenic 25.0%
!! GAGAAAAAAAAGATTAGTTG+TGG + chr8_2:67517201-67517220 Msa1264140:intron 25.0%
!! TTGACTTCTAAGAAAAATTG+TGG + chr8_2:67517226-67517245 Msa1264140:intron 25.0%
!!! CTTTAAGTTTTAGTTTTGTC+AGG + chr8_2:67517655-67517674 Msa1264140:intron 25.0%
! ATGAAGTGTATTATGTAATC+AGG + chr8_2:67518001-67518020 Msa1264140:three_prime_UTR 25.0%
!! ATTGATTCATATTAGAGTTC+TGG - chr8_2:67518066-67518085 None:intergenic 25.0%
! TTTGATACTGAAATTGTGTA+AGG + chr8_2:67518160-67518179 Msa1264140:three_prime_UTR 25.0%
! AAGATATTCAACAACGAAAA+AGG - chr8_2:67518255-67518274 None:intergenic 25.0%
! GTAGATAAAGGATAAATCAT+GGG - chr8_2:67518296-67518315 None:intergenic 25.0%
! TTCATTCATAATCATTGTTG+TGG + chr8_2:67518370-67518389 Msa1264140:three_prime_UTR 25.0%
!! AGTTTGATAATCAATTCACA+TGG + chr8_2:67518404-67518423 Msa1264140:three_prime_UTR 25.0%
!! AATCAATTCACATGGTTTTT+CGG + chr8_2:67518412-67518431 Msa1264140:three_prime_UTR 25.0%
!!! AAAAAGAAGCGTTACAAAAA+AGG - chr8_2:67518515-67518534 None:intergenic 25.0%
TTTGTTAGCACTTATCAGAT+TGG - chr8_2:67516581-67516600 None:intergenic 30.0%
ATAGAATTTAACCTTGAGCT+TGG - chr8_2:67516922-67516941 None:intergenic 30.0%
GATTATCAATATGCTCTCAT+TGG + chr8_2:67517005-67517024 Msa1264140:CDS 30.0%
GCCTACCAATAAATATCTAT+GGG + chr8_2:67517031-67517050 Msa1264140:CDS 30.0%
ACCCATAGATATTTATTGGT+AGG - chr8_2:67517035-67517054 None:intergenic 30.0%
GCTTACCCATAGATATTTAT+TGG - chr8_2:67517039-67517058 None:intergenic 30.0%
! ATTTTTCTTAGACACAATCG+TGG - chr8_2:67517254-67517273 None:intergenic 30.0%
AATAGAGTGAAGATTGATTG+TGG - chr8_2:67517457-67517476 None:intergenic 30.0%
TCTTTGACTCATTATAAGAG+AGG + chr8_2:67517595-67517614 Msa1264140:intron 30.0%
CTTTGACTCATTATAAGAGA+GGG + chr8_2:67517596-67517615 Msa1264140:intron 30.0%
TAATCCAAGTTATTGTAGGA+AGG - chr8_2:67517767-67517786 None:intergenic 30.0%
AGGAGTTGTTAACTTATTGT+TGG + chr8_2:67518180-67518199 Msa1264140:three_prime_UTR 30.0%
CGTAGATAAAGGATAAATCA+TGG - chr8_2:67518297-67518316 None:intergenic 30.0%
!! ATCCACACACTATTTTTCTT+TGG - chr8_2:67518484-67518503 None:intergenic 30.0%
AAAAATAGTGTGTGGATATG+CGG + chr8_2:67518487-67518506 Msa1264140:three_prime_UTR 30.0%
CAAGAAACATTAAAAGTTCG+CGG - chr8_2:67518539-67518558 None:intergenic 30.0%
TTTGTTAGCACTTATCAGAT+TGG - chr8_2:67516581-67516600 None:intergenic 30.0%
ATAGAATTTAACCTTGAGCT+TGG - chr8_2:67516922-67516941 None:intergenic 30.0%
GATTATCAATATGCTCTCAT+TGG + chr8_2:67517005-67517024 Msa1264140:CDS 30.0%
GCCTACCAATAAATATCTAT+GGG + chr8_2:67517031-67517050 Msa1264140:CDS 30.0%
ACCCATAGATATTTATTGGT+AGG - chr8_2:67517035-67517054 None:intergenic 30.0%
GCTTACCCATAGATATTTAT+TGG - chr8_2:67517039-67517058 None:intergenic 30.0%
! ATTTTTCTTAGACACAATCG+TGG - chr8_2:67517254-67517273 None:intergenic 30.0%
AATAGAGTGAAGATTGATTG+TGG - chr8_2:67517457-67517476 None:intergenic 30.0%
TCTTTGACTCATTATAAGAG+AGG + chr8_2:67517595-67517614 Msa1264140:intron 30.0%
CTTTGACTCATTATAAGAGA+GGG + chr8_2:67517596-67517615 Msa1264140:intron 30.0%
TAATCCAAGTTATTGTAGGA+AGG - chr8_2:67517767-67517786 None:intergenic 30.0%
AGGAGTTGTTAACTTATTGT+TGG + chr8_2:67518180-67518199 Msa1264140:three_prime_UTR 30.0%
CGTAGATAAAGGATAAATCA+TGG - chr8_2:67518297-67518316 None:intergenic 30.0%
!! ATCCACACACTATTTTTCTT+TGG - chr8_2:67518484-67518503 None:intergenic 30.0%
AAAAATAGTGTGTGGATATG+CGG + chr8_2:67518487-67518506 Msa1264140:three_prime_UTR 30.0%
CAAGAAACATTAAAAGTTCG+CGG - chr8_2:67518539-67518558 None:intergenic 30.0%
GTTATTGCTTCCTCTATTTC+AGG - chr8_2:67516638-67516657 None:intergenic 35.0%
!!! GTGTTTCCCATTTTTTGTTG+TGG - chr8_2:67516663-67516682 None:intergenic 35.0%
AAAAAATGGGAAACACCGTA+GGG + chr8_2:67516667-67516686 Msa1264140:exon 35.0%
! TTTTGGGCTGAAAGAATGAA+GGG - chr8_2:67516764-67516783 None:intergenic 35.0%
!! TTTTTGGGCTGAAAGAATGA+AGG - chr8_2:67516765-67516784 None:intergenic 35.0%
TCATTCTTTCAGCCCAAAAA+TGG + chr8_2:67516765-67516784 Msa1264140:CDS 35.0%
!! CTTGTGTTCTCTCCATTTTT+GGG - chr8_2:67516780-67516799 None:intergenic 35.0%
! TCTTGTGTTCTCTCCATTTT+TGG - chr8_2:67516781-67516800 None:intergenic 35.0%
TTCATGTTCTCAATGAGACT+TGG + chr8_2:67516832-67516851 Msa1264140:CDS 35.0%
CTTATAAGCACTTCCTTCTA+TGG - chr8_2:67516877-67516896 None:intergenic 35.0%
!! CATAGAAGGAAGTGCTTATA+AGG + chr8_2:67516875-67516894 Msa1264140:CDS 35.0%
TATCAATATGCTCTCATTGG+TGG + chr8_2:67517008-67517027 Msa1264140:CDS 35.0%
ATCAATATGCTCTCATTGGT+GGG + chr8_2:67517009-67517028 Msa1264140:CDS 35.0%
GGCCTACCAATAAATATCTA+TGG + chr8_2:67517030-67517049 Msa1264140:CDS 35.0%
CAATCATAGCTAGATTGTCT+TGG - chr8_2:67517314-67517333 None:intergenic 35.0%
GTCTCTGATATGAAAATGTC+AGG - chr8_2:67517568-67517587 None:intergenic 35.0%
GAACCACAAGAAAACTATGA+AGG + chr8_2:67517686-67517705 Msa1264140:intron 35.0%
TGTTCCTTCCTACAATAACT+TGG + chr8_2:67517760-67517779 Msa1264140:intron 35.0%
TAGATTGCTTCATCCAAATG+GGG - chr8_2:67517818-67517837 None:intergenic 35.0%
GTAGATTGCTTCATCCAAAT+GGG - chr8_2:67517819-67517838 None:intergenic 35.0%
TGTAGATTGCTTCATCCAAA+TGG - chr8_2:67517820-67517839 None:intergenic 35.0%
!!! AAAAGGCATTTTGTGTCTTG+AGG - chr8_2:67517938-67517957 None:intergenic 35.0%
GTAAATTGCAATGCGTGTAT+TGG + chr8_2:67518103-67518122 Msa1264140:three_prime_UTR 35.0%
TGATATTCTACAGCAGAGAT+TGG + chr8_2:67518217-67518236 Msa1264140:three_prime_UTR 35.0%
! AATATCTTTTGCTGACCAGT+GGG + chr8_2:67518267-67518286 Msa1264140:three_prime_UTR 35.0%
GATCTAGTAGTCGTAGATAA+AGG - chr8_2:67518308-67518327 None:intergenic 35.0%
CTCCAAAGAAAAATAGTGTG+TGG + chr8_2:67518479-67518498 Msa1264140:three_prime_UTR 35.0%
GTTATTGCTTCCTCTATTTC+AGG - chr8_2:67516638-67516657 None:intergenic 35.0%
!!! GTGTTTCCCATTTTTTGTTG+TGG - chr8_2:67516663-67516682 None:intergenic 35.0%
AAAAAATGGGAAACACCGTA+GGG + chr8_2:67516667-67516686 Msa1264140:exon 35.0%
! TTTTGGGCTGAAAGAATGAA+GGG - chr8_2:67516764-67516783 None:intergenic 35.0%
!! TTTTTGGGCTGAAAGAATGA+AGG - chr8_2:67516765-67516784 None:intergenic 35.0%
TCATTCTTTCAGCCCAAAAA+TGG + chr8_2:67516765-67516784 Msa1264140:CDS 35.0%
!! CTTGTGTTCTCTCCATTTTT+GGG - chr8_2:67516780-67516799 None:intergenic 35.0%
! TCTTGTGTTCTCTCCATTTT+TGG - chr8_2:67516781-67516800 None:intergenic 35.0%
TTCATGTTCTCAATGAGACT+TGG + chr8_2:67516832-67516851 Msa1264140:CDS 35.0%
CTTATAAGCACTTCCTTCTA+TGG - chr8_2:67516877-67516896 None:intergenic 35.0%
!! CATAGAAGGAAGTGCTTATA+AGG + chr8_2:67516875-67516894 Msa1264140:CDS 35.0%
TATCAATATGCTCTCATTGG+TGG + chr8_2:67517008-67517027 Msa1264140:CDS 35.0%
ATCAATATGCTCTCATTGGT+GGG + chr8_2:67517009-67517028 Msa1264140:CDS 35.0%
GGCCTACCAATAAATATCTA+TGG + chr8_2:67517030-67517049 Msa1264140:CDS 35.0%
CAATCATAGCTAGATTGTCT+TGG - chr8_2:67517314-67517333 None:intergenic 35.0%
GTCTCTGATATGAAAATGTC+AGG - chr8_2:67517568-67517587 None:intergenic 35.0%
GAACCACAAGAAAACTATGA+AGG + chr8_2:67517686-67517705 Msa1264140:intron 35.0%
TGTTCCTTCCTACAATAACT+TGG + chr8_2:67517760-67517779 Msa1264140:intron 35.0%
TAGATTGCTTCATCCAAATG+GGG - chr8_2:67517818-67517837 None:intergenic 35.0%
GTAGATTGCTTCATCCAAAT+GGG - chr8_2:67517819-67517838 None:intergenic 35.0%
TGTAGATTGCTTCATCCAAA+TGG - chr8_2:67517820-67517839 None:intergenic 35.0%
!!! AAAAGGCATTTTGTGTCTTG+AGG - chr8_2:67517938-67517957 None:intergenic 35.0%
GTAAATTGCAATGCGTGTAT+TGG + chr8_2:67518103-67518122 Msa1264140:three_prime_UTR 35.0%
TGATATTCTACAGCAGAGAT+TGG + chr8_2:67518217-67518236 Msa1264140:three_prime_UTR 35.0%
! AATATCTTTTGCTGACCAGT+GGG + chr8_2:67518267-67518286 Msa1264140:three_prime_UTR 35.0%
GATCTAGTAGTCGTAGATAA+AGG - chr8_2:67518308-67518327 None:intergenic 35.0%
CTCCAAAGAAAAATAGTGTG+TGG + chr8_2:67518479-67518498 Msa1264140:three_prime_UTR 35.0%
CAGATTGGAGTAACTTTCCA+AGG - chr8_2:67516566-67516585 None:intergenic 40.0%
TGTCTCTCTACCTGAAATAG+AGG + chr8_2:67516625-67516644 Msa1264140:five_prime_UTR 40.0%
CAAAAAATGGGAAACACCGT+AGG + chr8_2:67516666-67516685 Msa1264140:exon 40.0%
! ATCACTGTTGAGAGTGTATG+TGG - chr8_2:67516805-67516824 None:intergenic 40.0%
ACATACACTCTCAACAGTGA+TGG + chr8_2:67516804-67516823 Msa1264140:CDS 40.0%
CATACACTCTCAACAGTGAT+GGG + chr8_2:67516805-67516824 Msa1264140:CDS 40.0%
GTTCTCAATGAGACTTGGAA+TGG + chr8_2:67516837-67516856 Msa1264140:CDS 40.0%
GGTAAAAGAACCTCCATAGA+AGG + chr8_2:67516861-67516880 Msa1264140:CDS 40.0%
ATAAGCACTTCCTTCTATGG+AGG - chr8_2:67516874-67516893 None:intergenic 40.0%
!! AGCTTGGCTTCATCACTTTT+GGG - chr8_2:67516906-67516925 None:intergenic 40.0%
GGAATAATTGGCAAGAATGG+AGG - chr8_2:67516948-67516967 None:intergenic 40.0%
GCAGGAATAATTGGCAAGAA+TGG - chr8_2:67516951-67516970 None:intergenic 40.0%
TTGCCAATTATTCCTGCTGT+TGG + chr8_2:67516954-67516973 Msa1264140:CDS 40.0%
TCTCCAACAGCAGGAATAAT+TGG - chr8_2:67516960-67516979 None:intergenic 40.0%
CACATGTATGGGATGTAACT+TGG - chr8_2:67517101-67517120 None:intergenic 40.0%
! CGTCCTTCATAGTTTTCTTG+TGG - chr8_2:67517692-67517711 None:intergenic 40.0%
GTTGAGAAAGCTAAGGAAGA+AGG + chr8_2:67517848-67517867 Msa1264140:CDS 40.0%
TGAGGACCTTAATCTTACTC+AGG - chr8_2:67517920-67517939 None:intergenic 40.0%
! GAATATCTTTTGCTGACCAG+TGG + chr8_2:67518266-67518285 Msa1264140:three_prime_UTR 40.0%
! ATATCTTTTGCTGACCAGTG+GGG + chr8_2:67518268-67518287 Msa1264140:three_prime_UTR 40.0%
CTACTAGATCACTCTACACA+TGG + chr8_2:67518318-67518337 Msa1264140:three_prime_UTR 40.0%
ATGGCTGATGTGGAAAGATA+TGG + chr8_2:67518337-67518356 Msa1264140:three_prime_UTR 40.0%
TGGCTGATGTGGAAAGATAT+GGG + chr8_2:67518338-67518357 Msa1264140:three_prime_UTR 40.0%
TGATGTGGAAAGATATGGGT+AGG + chr8_2:67518342-67518361 Msa1264140:three_prime_UTR 40.0%
GATGTGGAAAGATATGGGTA+GGG + chr8_2:67518343-67518362 Msa1264140:three_prime_UTR 40.0%
CAGATTGGAGTAACTTTCCA+AGG - chr8_2:67516566-67516585 None:intergenic 40.0%
TGTCTCTCTACCTGAAATAG+AGG + chr8_2:67516625-67516644 Msa1264140:five_prime_UTR 40.0%
CAAAAAATGGGAAACACCGT+AGG + chr8_2:67516666-67516685 Msa1264140:exon 40.0%
! ATCACTGTTGAGAGTGTATG+TGG - chr8_2:67516805-67516824 None:intergenic 40.0%
ACATACACTCTCAACAGTGA+TGG + chr8_2:67516804-67516823 Msa1264140:CDS 40.0%
CATACACTCTCAACAGTGAT+GGG + chr8_2:67516805-67516824 Msa1264140:CDS 40.0%
GTTCTCAATGAGACTTGGAA+TGG + chr8_2:67516837-67516856 Msa1264140:CDS 40.0%
GGTAAAAGAACCTCCATAGA+AGG + chr8_2:67516861-67516880 Msa1264140:CDS 40.0%
ATAAGCACTTCCTTCTATGG+AGG - chr8_2:67516874-67516893 None:intergenic 40.0%
!! AGCTTGGCTTCATCACTTTT+GGG - chr8_2:67516906-67516925 None:intergenic 40.0%
GGAATAATTGGCAAGAATGG+AGG - chr8_2:67516948-67516967 None:intergenic 40.0%
GCAGGAATAATTGGCAAGAA+TGG - chr8_2:67516951-67516970 None:intergenic 40.0%
TTGCCAATTATTCCTGCTGT+TGG + chr8_2:67516954-67516973 Msa1264140:CDS 40.0%
TCTCCAACAGCAGGAATAAT+TGG - chr8_2:67516960-67516979 None:intergenic 40.0%
CACATGTATGGGATGTAACT+TGG - chr8_2:67517101-67517120 None:intergenic 40.0%
! CGTCCTTCATAGTTTTCTTG+TGG - chr8_2:67517692-67517711 None:intergenic 40.0%
GTTGAGAAAGCTAAGGAAGA+AGG + chr8_2:67517848-67517867 Msa1264140:CDS 40.0%
TGAGGACCTTAATCTTACTC+AGG - chr8_2:67517920-67517939 None:intergenic 40.0%
! GAATATCTTTTGCTGACCAG+TGG + chr8_2:67518266-67518285 Msa1264140:three_prime_UTR 40.0%
! ATATCTTTTGCTGACCAGTG+GGG + chr8_2:67518268-67518287 Msa1264140:three_prime_UTR 40.0%
CTACTAGATCACTCTACACA+TGG + chr8_2:67518318-67518337 Msa1264140:three_prime_UTR 40.0%
ATGGCTGATGTGGAAAGATA+TGG + chr8_2:67518337-67518356 Msa1264140:three_prime_UTR 40.0%
TGGCTGATGTGGAAAGATAT+GGG + chr8_2:67518338-67518357 Msa1264140:three_prime_UTR 40.0%
TGATGTGGAAAGATATGGGT+AGG + chr8_2:67518342-67518361 Msa1264140:three_prime_UTR 40.0%
GATGTGGAAAGATATGGGTA+GGG + chr8_2:67518343-67518362 Msa1264140:three_prime_UTR 40.0%
AAGGACAAGGAGGTTGTGAA+GGG + chr8_2:67516690-67516709 Msa1264140:CDS 45.0%
! TGTAGACTTGGAGAGGTACA+TGG + chr8_2:67516713-67516732 Msa1264140:CDS 45.0%
! GTAGACTTGGAGAGGTACAT+GGG + chr8_2:67516714-67516733 Msa1264140:CDS 45.0%
CTCAATGAGACTTGGAATGG+TGG + chr8_2:67516840-67516859 Msa1264140:CDS 45.0%
!! GCTTGGCTTCATCACTTTTG+GGG - chr8_2:67516905-67516924 None:intergenic 45.0%
! GAGCTTGGCTTCATCACTTT+TGG - chr8_2:67516907-67516926 None:intergenic 45.0%
AAGTGATGAAGCCAAGCTCA+AGG + chr8_2:67516908-67516927 Msa1264140:CDS 45.0%
TTCCTGCTGTTGGAGATTAC+TGG + chr8_2:67516964-67516983 Msa1264140:CDS 45.0%
ATCCAGTAATCTCCAACAGC+AGG - chr8_2:67516969-67516988 None:intergenic 45.0%
TAGAGAGTGAACGCTCAATG+TGG + chr8_2:67517481-67517500 Msa1264140:intron 45.0%
TTGGTCCCTAGATACTATGC+AGG + chr8_2:67517789-67517808 Msa1264140:intron 45.0%
GGTTGCCTGCATAGTATCTA+GGG - chr8_2:67517797-67517816 None:intergenic 45.0%
! CCTTAGCTTTCTCAACAAGC+TGG - chr8_2:67517844-67517863 None:intergenic 45.0%
!! CCAGCTTGTTGAGAAAGCTA+AGG + chr8_2:67517841-67517860 Msa1264140:CDS 45.0%
CCTTAATCTTACTCAGGTGG+AGG - chr8_2:67517914-67517933 None:intergenic 45.0%
CCTCCACCTGAGTAAGATTA+AGG + chr8_2:67517911-67517930 Msa1264140:exon 45.0%
GGACCTTAATCTTACTCAGG+TGG - chr8_2:67517917-67517936 None:intergenic 45.0%
ATAAATCATGGGATCCCCAC+TGG - chr8_2:67518285-67518304 None:intergenic 45.0%
AAGGACAAGGAGGTTGTGAA+GGG + chr8_2:67516690-67516709 Msa1264140:CDS 45.0%
! TGTAGACTTGGAGAGGTACA+TGG + chr8_2:67516713-67516732 Msa1264140:CDS 45.0%
! GTAGACTTGGAGAGGTACAT+GGG + chr8_2:67516714-67516733 Msa1264140:CDS 45.0%
CTCAATGAGACTTGGAATGG+TGG + chr8_2:67516840-67516859 Msa1264140:CDS 45.0%
!! GCTTGGCTTCATCACTTTTG+GGG - chr8_2:67516905-67516924 None:intergenic 45.0%
! GAGCTTGGCTTCATCACTTT+TGG - chr8_2:67516907-67516926 None:intergenic 45.0%
AAGTGATGAAGCCAAGCTCA+AGG + chr8_2:67516908-67516927 Msa1264140:CDS 45.0%
TTCCTGCTGTTGGAGATTAC+TGG + chr8_2:67516964-67516983 Msa1264140:CDS 45.0%
ATCCAGTAATCTCCAACAGC+AGG - chr8_2:67516969-67516988 None:intergenic 45.0%
TAGAGAGTGAACGCTCAATG+TGG + chr8_2:67517481-67517500 Msa1264140:intron 45.0%
TTGGTCCCTAGATACTATGC+AGG + chr8_2:67517789-67517808 Msa1264140:intron 45.0%
GGTTGCCTGCATAGTATCTA+GGG - chr8_2:67517797-67517816 None:intergenic 45.0%
! CCTTAGCTTTCTCAACAAGC+TGG - chr8_2:67517844-67517863 None:intergenic 45.0%
!! CCAGCTTGTTGAGAAAGCTA+AGG + chr8_2:67517841-67517860 Msa1264140:CDS 45.0%
CCTTAATCTTACTCAGGTGG+AGG - chr8_2:67517914-67517933 None:intergenic 45.0%
CCTCCACCTGAGTAAGATTA+AGG + chr8_2:67517911-67517930 Msa1264140:exon 45.0%
GGACCTTAATCTTACTCAGG+TGG - chr8_2:67517917-67517936 None:intergenic 45.0%
ATAAATCATGGGATCCCCAC+TGG - chr8_2:67518285-67518304 None:intergenic 45.0%
!! AATAAATAAATAAATAGTTA+TGG + chr8_2:67517971-67517990 Msa1264140:three_prime_UTR 5.0%
!! AATAAATAAATAAATAGTTA+TGG + chr8_2:67517971-67517990 Msa1264140:three_prime_UTR 5.0%
AATGGGAAACACCGTAGGGA+AGG + chr8_2:67516671-67516690 Msa1264140:exon 50.0%
AAACACCGTAGGGAAGGACA+AGG + chr8_2:67516677-67516696 Msa1264140:CDS 50.0%
AACCTCCTTGTCCTTCCCTA+CGG - chr8_2:67516685-67516704 None:intergenic 50.0%
GAAGGACAAGGAGGTTGTGA+AGG + chr8_2:67516689-67516708 Msa1264140:CDS 50.0%
! GGTTGTGAAGGGTGTAGACT+TGG + chr8_2:67516701-67516720 Msa1264140:CDS 50.0%
! TGAAGGGTGTAGACTTGGAG+AGG + chr8_2:67516706-67516725 Msa1264140:CDS 50.0%
! ACTTGGAGAGGTACATGGGT+AGG + chr8_2:67516718-67516737 Msa1264140:CDS 50.0%
GGGTTGCCTGCATAGTATCT+AGG - chr8_2:67517798-67517817 None:intergenic 50.0%
ACTATGCAGGCAACCCCATT+TGG + chr8_2:67517802-67517821 Msa1264140:CDS 50.0%
CACTCTACACATGGCTGATG+TGG + chr8_2:67518327-67518346 Msa1264140:three_prime_UTR 50.0%
AATGGGAAACACCGTAGGGA+AGG + chr8_2:67516671-67516690 Msa1264140:exon 50.0%
AAACACCGTAGGGAAGGACA+AGG + chr8_2:67516677-67516696 Msa1264140:CDS 50.0%
AACCTCCTTGTCCTTCCCTA+CGG - chr8_2:67516685-67516704 None:intergenic 50.0%
GAAGGACAAGGAGGTTGTGA+AGG + chr8_2:67516689-67516708 Msa1264140:CDS 50.0%
! GGTTGTGAAGGGTGTAGACT+TGG + chr8_2:67516701-67516720 Msa1264140:CDS 50.0%
! TGAAGGGTGTAGACTTGGAG+AGG + chr8_2:67516706-67516725 Msa1264140:CDS 50.0%
! ACTTGGAGAGGTACATGGGT+AGG + chr8_2:67516718-67516737 Msa1264140:CDS 50.0%
GGGTTGCCTGCATAGTATCT+AGG - chr8_2:67517798-67517817 None:intergenic 50.0%
ACTATGCAGGCAACCCCATT+TGG + chr8_2:67517802-67517821 Msa1264140:CDS 50.0%
CACTCTACACATGGCTGATG+TGG + chr8_2:67518327-67518346 Msa1264140:three_prime_UTR 50.0%
! TGGAGAGGTACATGGGTAGG+TGG + chr8_2:67516721-67516740 Msa1264140:CDS 55.0%
TCAGGTGGAGGATCACTCTG+TGG - chr8_2:67517902-67517921 None:intergenic 55.0%
! TGGAGAGGTACATGGGTAGG+TGG + chr8_2:67516721-67516740 Msa1264140:CDS 55.0%
TCAGGTGGAGGATCACTCTG+TGG - chr8_2:67517902-67517921 None:intergenic 55.0%
CACCGTAGGGAAGGACAAGG+AGG + chr8_2:67516680-67516699 Msa1264140:CDS 60.0%
CACCGTAGGGAAGGACAAGG+AGG + chr8_2:67516680-67516699 Msa1264140:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 67516552 67518566 67516552 ID=Msa1264140;Name=Msa1264140
chr8_2 mRNA 67516552 67518566 67516552 ID=Msa1264140-mRNA-1;Parent=Msa1264140;Name=Msa1264140-mRNA-1;_AED=0.27;_eAED=0.27;_QI=120|1|1|1|1|1|2|641|168
chr8_2 exon 67516552 67517052 67516552 ID=Msa1264140-mRNA-1:exon:22260;Parent=Msa1264140-mRNA-1
chr8_2 exon 67517800 67518566 67517800 ID=Msa1264140-mRNA-1:exon:22261;Parent=Msa1264140-mRNA-1
chr8_2 five_prime_UTR 67516552 67516671 67516552 ID=Msa1264140-mRNA-1:five_prime_utr;Parent=Msa1264140-mRNA-1
chr8_2 CDS 67516672 67517052 67516672 ID=Msa1264140-mRNA-1:cds;Parent=Msa1264140-mRNA-1
chr8_2 CDS 67517800 67517925 67517800 ID=Msa1264140-mRNA-1:cds;Parent=Msa1264140-mRNA-1
chr8_2 three_prime_UTR 67517926 67518566 67517926 ID=Msa1264140-mRNA-1:three_prime_utr;Parent=Msa1264140-mRNA-1
Gene Sequence

>Msa1264140

ATGGGAAACACCGTAGGGAAGGACAAGGAGGTTGTGAAGGGTGTAGACTTGGAGAGGTACATGGGTAGGTGGTATGAGATAGCTTCTTTCCCTTCATTCTTTCAGCCCAAAAATGGAGAGAACACAAGAGCCACATACACTCTCAACAGTGATGGGACTGTTCATGTTCTCAATGAGACTTGGAATGGTGGTAAAAGAACCTCCATAGAAGGAAGTGCTTATAAGGCTGACCCCAAAAGTGATGAAGCCAAGCTCAAGGTTAAATTCTATGTTCCTCCATTCTTGCCAATTATTCCTGCTGTTGGAGATTACTGGATTTTGTACCTTGATCAAGATTATCAATATGCTCTCATTGGTGGGCCTACCAATAAATATCTATGGATACTATGCAGGCAACCCCATTTGGATGAAGCAATCTACAACCAGCTTGTTGAGAAAGCTAAGGAAGAAGGTTATGATGTGAGTAAATTGCACAAGACTCCACAGAGTGATCCTCCACCTGAGTAA

Protein sequence

>Msa1264140

MGNTVGKDKEVVKGVDLERYMGRWYEIASFPSFFQPKNGENTRATYTLNSDGTVHVLNETWNGGKRTSIEGSAYKADPKSDEAKLKVKFYVPPFLPIIPAVGDYWILYLDQDYQYALIGGPTNKYLWILCRQPHLDEAIYNQLVEKAKEEGYDVSKLHKTPQSDPPPE*