AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055010 MtrunA17_Chr1g0149651 95.900 439 10 3 1 434 1 436 0.0 863
Msa0055010 MtrunA17_Chr3g0137241 66.063 442 75 9 1 436 1 373 0.0 547
Msa0055010 MtrunA17_Chr2g0305101 82.331 266 43 2 171 433 90 354 2.86e-165 469
Msa0055010 MtrunA17_Chr4g0065241 82.213 253 43 2 171 421 66 318 8.28e-156 444
Msa0055010 MtrunA17_Chr5g0398181 70.566 265 72 2 176 434 28 292 8.73e-130 377
Msa0055010 MtrunA17_Chr1g0192791 35.600 250 130 8 176 418 20 245 4.83e-31 120
Msa0055010 MtrunA17_Chr2g0289201 31.148 244 143 3 176 418 118 337 4.40e-30 120
Msa0055010 MtrunA17_Chr5g0413201 34.553 246 134 5 176 418 73 294 1.13e-27 112
Msa0055010 MtrunA17_Chr1g0151961 33.333 246 138 6 176 418 120 342 1.90e-27 112
Msa0055010 MtrunA17_Chr5g0439391 31.429 245 134 5 178 418 49 263 5.82e-23 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055010 AT5G25220.2 64.640 444 122 9 1 434 1 419 0.0 529
Msa0055010 AT5G25220.1 64.560 443 122 9 1 433 1 418 0.0 527
Msa0055010 AT5G11060.1 74.622 331 58 5 110 433 71 382 2.09e-172 489
Msa0055010 AT4G32040.1 55.782 441 128 11 1 435 1 380 1.08e-152 438
Msa0055010 AT4G32040.2 55.909 440 127 11 1 434 1 379 2.57e-152 437
Msa0055010 AT1G62990.1 66.202 287 89 4 152 433 7 290 2.34e-131 380
Msa0055010 AT1G70510.1 35.433 254 133 9 169 418 63 289 8.77e-32 123
Msa0055010 AT1G70510.2 34.252 254 140 8 169 418 63 293 3.12e-30 119
Msa0055010 AT1G23380.1 35.458 251 123 8 176 418 86 305 4.86e-29 116
Msa0055010 AT4G08150.1 34.783 253 128 8 176 418 135 360 1.05e-27 114
Msa0055010 AT1G23380.2 35.178 253 123 9 176 418 86 307 3.60e-27 111
Msa0055010 AT1G62360.1 33.200 250 132 5 176 418 122 343 2.45e-26 110

Find 204 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATATGCTAAAACAAAT+TGG 0.156743 1_2:+9806294 Msa0055010:three_prime_UTR
TGTGGTTTGGAGTTGGTTAT+TGG 0.197216 1_2:-9802712 None:intergenic
TAGTATAATGCTACATAATT+AGG 0.212748 1_2:+9806267 Msa0055010:three_prime_UTR
GTGGTTTGGAGTTGGTTATT+GGG 0.252277 1_2:-9802711 None:intergenic
TTGTTCTTTAAATTGGTATT+TGG 0.257518 1_2:+9806459 Msa0055010:three_prime_UTR
AGGTACTAGGTAGCTATTAT+AGG 0.274059 1_2:-9802493 None:intergenic
ACCACCAAACGCAGAGTATT+TGG 0.277454 1_2:-9803231 None:intergenic
GTGTAATAACCACTAATCTT+AGG 0.277516 1_2:-9805715 None:intergenic
TCGGAATCAGGTTTGGAGTT+AGG 0.279489 1_2:-9802687 None:intergenic
ATCATCACACATACTTTGTT+TGG 0.293011 1_2:+9802147 Msa0055010:five_prime_UTR
GGAAATGAAGATAAAATATT+GGG 0.297720 1_2:-9802320 None:intergenic
CTTGTCTTACACGCTCCATT+AGG 0.305466 1_2:-9805063 None:intergenic
TGAGTTGTTGTTATTGTTGT+TGG 0.307531 1_2:-9802634 None:intergenic
AGGAAATGAAGATAAAATAT+TGG 0.312300 1_2:-9802321 None:intergenic
TTATACTAAAGCAGGCCTTC+AGG 0.312512 1_2:-9806252 None:intergenic
AAACCATTTGTACAACAAAT+TGG 0.312918 1_2:-9806499 None:intergenic
AGAAGGAAAGGGAGGGAAGA+AGG 0.318735 1_2:-9802196 None:intergenic
CCACTAATCTTAGGGGAGTT+TGG 0.319284 1_2:-9805706 None:intergenic
GTCGGGTGAGTCTGGTAATA+TGG 0.319705 1_2:-9802664 None:intergenic
CAAACATACACACACTTGTT+TGG 0.322398 1_2:+9802532 Msa0055010:five_prime_UTR
AACTAAAGCAAATTAATAAC+TGG 0.324917 1_2:+9805570 Msa0055010:CDS
TGGTTATTGGGGTCGGAATC+AGG 0.331916 1_2:-9802699 None:intergenic
CACTGACGCCCTTCTTGTTA+AGG 0.338297 1_2:+9805735 Msa0055010:three_prime_UTR
CGGAATCAGGTTTGGAGTTA+GGG 0.345170 1_2:-9802686 None:intergenic
GTTAAACGTACTGTTGGATA+TGG 0.348322 1_2:-9805320 None:intergenic
GGGGAAGAGTGAGGTGGCGG+TGG 0.352138 1_2:+9803025 Msa0055010:CDS
GCAAGGTTGGTGCAGGAAAC+TGG 0.359590 1_2:+9805542 Msa0055010:CDS
GTATTTGGAATGTATGTAAA+GGG 0.360759 1_2:+9806474 Msa0055010:three_prime_UTR
TTAGTGAAGGTTATAGTAAA+GGG 0.362730 1_2:+9805800 Msa0055010:three_prime_UTR
GAAGGAAAGGGAGGGAAGAA+GGG 0.362993 1_2:-9802195 None:intergenic
TGTTGTTATTGTTGTTGGTT+TGG 0.365581 1_2:-9802629 None:intergenic
CAATCCTTACAAAGCCTAAC+AGG 0.372024 1_2:+9804295 Msa0055010:CDS
TCATTCTCTGTTGGTATAAG+AGG 0.376610 1_2:-9805034 None:intergenic
CAAAGAACTTGACCATTTCA+TGG 0.380421 1_2:+9803265 Msa0055010:CDS
TGTAATAACCACTAATCTTA+GGG 0.381221 1_2:-9805714 None:intergenic
GGTGCGGATAACATGGGATT+TGG 0.387749 1_2:+9805010 Msa0055010:CDS
AGACGAGCTGGGAAACTTCC+TGG 0.389865 1_2:+9805248 Msa0055010:CDS
AAGAGTGAGGTGGCGGTGGA+TGG 0.389997 1_2:+9803029 Msa0055010:CDS
TGTACCTGTTAGGCTTTGTA+AGG 0.392039 1_2:-9804299 None:intergenic
ATTGGGGTCGGAATCAGGTT+TGG 0.402937 1_2:-9802694 None:intergenic
AGTGTCGCTGTTAACGTTGT+TGG 0.409049 1_2:-9802811 None:intergenic
AACTCCAAACCACACCTAAC+TGG 0.409860 1_2:+9802721 Msa0055010:CDS
GTGTCTGTGTCAATGCTTCA+TGG 0.412831 1_2:+9805976 Msa0055010:three_prime_UTR
GATGGAGACGGAGGAGGAGC+TGG 0.415977 1_2:+9803047 Msa0055010:CDS
CTTGTGAAAGATGTTGGTTT+TGG 0.416399 1_2:-9802581 None:intergenic
TTTATGTTTGTATAATATTG+AGG 0.421159 1_2:+9806366 Msa0055010:three_prime_UTR
TTGTCTTACACGCTCCATTA+GGG 0.421646 1_2:-9805062 None:intergenic
GTCTGACGATGAAGATGAAC+AGG 0.422271 1_2:+9804946 Msa0055010:CDS
TAATAAACATTCATCTTAAG+AGG 0.423129 1_2:+9806098 Msa0055010:three_prime_UTR
GAGGAGCTGGATTGGTGAAC+TGG 0.424541 1_2:+9803060 Msa0055010:CDS
GAGTTAGGGTCGGGTGAGTC+TGG 0.425434 1_2:-9802672 None:intergenic
TGACACAACTTCTGTCCTTA+AGG 0.425689 1_2:+9805271 Msa0055010:CDS
TGAGCCAGTTAGGTGTGGTT+TGG 0.429844 1_2:-9802725 None:intergenic
CGATTACTTCACCGTGTTGA+CGG 0.433544 1_2:-9802926 None:intergenic
CTTAGTGAAGGTTATAGTAA+AGG 0.438469 1_2:+9805799 Msa0055010:three_prime_UTR
CGGTGTCGGAAGTTTGTTGA+AGG 0.438867 1_2:-9802863 None:intergenic
TCAATCAAAGGAAGAGGAAC+TGG 0.439251 1_2:+9805597 Msa0055010:CDS
ACTATATGCTAAAACAAATT+GGG 0.439403 1_2:+9806295 Msa0055010:three_prime_UTR
CCATGCAATGGAAGCTGTAA+TGG 0.441406 1_2:+9804255 Msa0055010:CDS
GAGGTGGAAGGCGGAGATAA+TGG 0.444829 1_2:+9803091 Msa0055010:CDS
TATACTAAAGCAGGCCTTCA+GGG 0.448190 1_2:-9806251 None:intergenic
GTTGCCCCTGTACCTTCTCC+AGG 0.448447 1_2:-9804920 None:intergenic
AACATCGACGGTGATGGACT+TGG 0.449142 1_2:+9803002 Msa0055010:CDS
TGGTTTGGAGTTGGTTATTG+GGG 0.449341 1_2:-9802710 None:intergenic
TGGTTTGGTCTGTGAAATGT+TGG 0.450755 1_2:-9802614 None:intergenic
TTGTTGCAATTGTTCTTTGA+AGG 0.451938 1_2:-9804221 None:intergenic
AGAGAATGAAAGGTCCCTAA+TGG 0.452095 1_2:+9805048 Msa0055010:CDS
ACATCGACGGTGATGGACTT+GGG 0.452431 1_2:+9803003 Msa0055010:CDS
CAATGGAAGATGGAGAAGAA+GGG 0.452620 1_2:-9802241 None:intergenic
CCAAACTCCCCTAAGATTAG+TGG 0.452857 1_2:+9805706 Msa0055010:three_prime_UTR
TTGGAGTTGGTTATTGGGGT+CGG 0.454739 1_2:-9802706 None:intergenic
CGGCACATGTGGCGTGTTTG+AGG 0.457717 1_2:+9803141 Msa0055010:CDS
TTTGTGTTGTTGGTTTGGTT+GGG 0.459054 1_2:-9802383 None:intergenic
TACTTGCTTCAGATTAGCAT+TGG 0.459631 1_2:-9806170 None:intergenic
GATGTAATTTCAGTAAAGAA+AGG 0.461024 1_2:+9806065 Msa0055010:three_prime_UTR
TGGAAGCTGTAATGGCTTGT+TGG 0.463261 1_2:+9804263 Msa0055010:CDS
GTGATTGCCACCAAGCCTTA+AGG 0.468131 1_2:-9805286 None:intergenic
TTATGTTTGTATAATATTGA+GGG 0.468226 1_2:+9806367 Msa0055010:three_prime_UTR
TAATCTGAAGCAAGTACAAC+AGG 0.468598 1_2:+9806177 Msa0055010:three_prime_UTR
ATAGCGTTGTTGAGCCAGTT+AGG 0.469554 1_2:-9802735 None:intergenic
ACAATGGAAGATGGAGAAGA+AGG 0.471588 1_2:-9802242 None:intergenic
AAATACTCTGCGTTTGGTGG+TGG 0.474689 1_2:+9803233 Msa0055010:CDS
AGGGACCTTTCATTCTCTGT+TGG 0.480001 1_2:-9805043 None:intergenic
AAGAAGGGGAGGGTAGAATG+TGG 0.481283 1_2:-9802226 None:intergenic
GTTGTATGAACAGTTGTTGT+CGG 0.481534 1_2:+9803121 Msa0055010:CDS
GGAAGCTGTAATGGCTTGTT+GGG 0.483636 1_2:+9804264 Msa0055010:CDS
GGTATTTGGAATGTATGTAA+AGG 0.484449 1_2:+9806473 Msa0055010:three_prime_UTR
TACCATGGTATTGAACTTGA+AGG 0.485015 1_2:-9802466 None:intergenic
ATGTAATTTCAGTAAAGAAA+GGG 0.485825 1_2:+9806066 Msa0055010:three_prime_UTR
CCGTGCAAACCACCGGTCAA+TGG 0.487735 1_2:+9802883 Msa0055010:CDS
AGTTAGGTGTGGTTTGGAGT+TGG 0.488164 1_2:-9802719 None:intergenic
TTCAAGACAGTAGAGGTTGA+AGG 0.491189 1_2:-9805629 None:intergenic
TGATGGCGGTGCGGATAACA+TGG 0.492193 1_2:+9805003 Msa0055010:CDS
GCCAAATACTCTGCGTTTGG+TGG 0.493142 1_2:+9803230 Msa0055010:CDS
ATCAGGTTTGGAGTTAGGGT+CGG 0.495240 1_2:-9802682 None:intergenic
CTGGCAGATGGGGAGGTGGA+AGG 0.496148 1_2:+9803079 Msa0055010:CDS
TGTGGAGTAGAAAGAAGGAA+AGG 0.497010 1_2:-9802208 None:intergenic
ATTAGTATAATATAATCATA+AGG 0.498053 1_2:-9806429 None:intergenic
TCTTGAAGAGCAAACGCAAA+AGG 0.498087 1_2:+9805645 Msa0055010:CDS
ATCGACAACGTTACCATGGC+CGG 0.498375 1_2:+9802945 Msa0055010:CDS
CCACCGGTCAATGGCTTGCA+CGG 0.499073 1_2:+9802892 Msa0055010:CDS
CATTCTCTGTTGGTATAAGA+GGG 0.502060 1_2:-9805033 None:intergenic
GTGCTCTACTTCTCCGGCCA+TGG 0.502170 1_2:-9802958 None:intergenic
TAACTCGTGCTCTACTTCTC+CGG 0.503885 1_2:-9802964 None:intergenic
GCGGTGGATGGAGACGGAGG+AGG 0.505247 1_2:+9803041 Msa0055010:CDS
CAACTTCTGTCCTTAAGGCT+TGG 0.507609 1_2:+9805276 Msa0055010:CDS
GTTGTTGTTGTCGGTGTAGT+GGG 0.509535 1_2:-9802766 None:intergenic
CTTCTGTCCTTAAGGCTTGG+TGG 0.509687 1_2:+9805279 Msa0055010:CDS
AGACGGAGGAGGAGCTGGAT+TGG 0.510601 1_2:+9803052 Msa0055010:CDS
GTTTCACCTGGAGAAGGTAC+AGG 0.511536 1_2:+9804914 Msa0055010:CDS
AGATAAAGCAAGGTTGGTGC+AGG 0.511577 1_2:+9805535 Msa0055010:CDS
TGTGATTTCCTTAACAAGAA+GGG 0.511966 1_2:-9805743 None:intergenic
CCATTACAGCTTCCATTGCA+TGG 0.512486 1_2:-9804255 None:intergenic
ATGTGATTTCCTTAACAAGA+AGG 0.513302 1_2:-9805744 None:intergenic
ACCGGTGGTTTGCACGGTGT+CGG 0.514390 1_2:-9802877 None:intergenic
TAGAATGTGGAGTAGAAAGA+AGG 0.514663 1_2:-9802213 None:intergenic
ATGTAGCATTATACTAAAGC+AGG 0.515908 1_2:-9806260 None:intergenic
TCAGGTTTGGAGTTAGGGTC+GGG 0.519463 1_2:-9802681 None:intergenic
CATCGACGGTGATGGACTTG+GGG 0.520169 1_2:+9803004 Msa0055010:CDS
AATGGAAGATGGAGAAGAAG+GGG 0.521506 1_2:-9802240 None:intergenic
GTGGAGTAGAAAGAAGGAAA+GGG 0.524686 1_2:-9802207 None:intergenic
TGAACTGGCAGATGGGGAGG+TGG 0.525868 1_2:+9803075 Msa0055010:CDS
GCAACTCTTGTGAAAGATGT+TGG 0.526828 1_2:-9802587 None:intergenic
TGGATTGGTGAACTGGCAGA+TGG 0.530194 1_2:+9803067 Msa0055010:CDS
GTACCAACACTACAGATTGA+AGG 0.530230 1_2:+9805841 Msa0055010:three_prime_UTR
GTGGCCAAATACTCTGCGTT+TGG 0.531063 1_2:+9803227 Msa0055010:CDS
ATAACTGGTTTATCAATCAA+AGG 0.531319 1_2:+9805585 Msa0055010:CDS
TCATACATTATAGGGTTACA+AGG 0.531432 1_2:+9805187 Msa0055010:intron
TGTTGTTGTTGTCGGTGTAG+TGG 0.532560 1_2:-9802767 None:intergenic
GAGGTGGCGGTGGATGGAGA+CGG 0.532603 1_2:+9803035 Msa0055010:CDS
TGGTCTGTGAAATGTTGGAT+TGG 0.533649 1_2:-9802609 None:intergenic
TATGACAAGACAATGGAAGA+TGG 0.537668 1_2:-9802251 None:intergenic
GAGTAGAAAGAAGGAAAGGG+AGG 0.538292 1_2:-9802204 None:intergenic
CCATTGACCGGTGGTTTGCA+CGG 0.539128 1_2:-9802883 None:intergenic
ATCGACGGTGATGGACTTGG+GGG 0.539928 1_2:+9803005 Msa0055010:CDS
AAGAGCAGCATTCAAAGTAA+AGG 0.541009 1_2:+9806037 Msa0055010:three_prime_UTR
ACATGTCCGCGTCCATGCAA+TGG 0.541622 1_2:+9804243 Msa0055010:CDS
CGACCGTGCAAGCCATTGAC+CGG 0.542113 1_2:-9802895 None:intergenic
GCACGAGTTAAGTAATATGA+AGG 0.544289 1_2:+9802977 Msa0055010:CDS
GGAGGAAGATAAAGCAAGGT+TGG 0.544598 1_2:+9805529 Msa0055010:intron
GATTGGTGAACTGGCAGATG+GGG 0.546447 1_2:+9803069 Msa0055010:CDS
TGGTGAACTGGCAGATGGGG+AGG 0.547939 1_2:+9803072 Msa0055010:CDS
TACTGTTGGATATGGCCACT+TGG 0.548498 1_2:-9805312 None:intergenic
AGAAGGGACGTTGTTGTGAT+CGG 0.549064 1_2:-9802179 None:intergenic
ATCCTCGGTAACTGATCCAC+CGG 0.551656 1_2:-9803173 None:intergenic
GGAAGATGGAGAAGAAGGGG+AGG 0.558749 1_2:-9802237 None:intergenic
GGATTGGTGAACTGGCAGAT+GGG 0.560565 1_2:+9803068 Msa0055010:CDS
TCCGACACCGTGCAAACCAC+CGG 0.562776 1_2:+9802876 Msa0055010:CDS
AAGGATAACATCGACGGTGA+TGG 0.564146 1_2:+9802996 Msa0055010:CDS
ATGTTTGTATAATATTGAGG+GGG 0.568452 1_2:+9806369 Msa0055010:three_prime_UTR
GTGGCGGTGGATGGAGACGG+AGG 0.571035 1_2:+9803038 Msa0055010:CDS
CAGCTTCCATTGCATGGACG+CGG 0.571610 1_2:-9804249 None:intergenic
TTATACCAACAGAGAATGAA+AGG 0.571808 1_2:+9805038 Msa0055010:CDS
GCAGATGGGGAGGTGGAAGG+CGG 0.573467 1_2:+9803082 Msa0055010:CDS
TTCAGGAGGAAGATAAAGCA+AGG 0.577710 1_2:+9805525 Msa0055010:intron
GGTTTATCAATCAAAGGAAG+AGG 0.579093 1_2:+9805591 Msa0055010:CDS
TTTCACCTGGAGAAGGTACA+GGG 0.580246 1_2:+9804915 Msa0055010:CDS
GAAGATGGAGAAGAAGGGGA+GGG 0.581252 1_2:-9802236 None:intergenic
ACCATGGTATTGAACTTGAA+GGG 0.581310 1_2:-9802465 None:intergenic
TATGTTTGTATAATATTGAG+GGG 0.583085 1_2:+9806368 Msa0055010:three_prime_UTR
GTGTTAGAAAACAAGGTACT+AGG 0.585673 1_2:-9802506 None:intergenic
ACGCCTTCAATCTGTAGTGT+TGG 0.589859 1_2:-9805844 None:intergenic
AGGACAGAAGTTGTGTCACC+AGG 0.595424 1_2:-9805266 None:intergenic
TGTTTGTATAATATTGAGGG+GGG 0.595517 1_2:+9806370 Msa0055010:three_prime_UTR
GCATGAACAGGAGTTTCACC+TGG 0.596871 1_2:+9804902 Msa0055010:intron
ACAGTTGTTGTCGGCACATG+TGG 0.599267 1_2:+9803130 Msa0055010:CDS
AACGTTAACAGCGACACTGA+CGG 0.600250 1_2:+9802816 Msa0055010:CDS
GAGAAAATATGACAAGACAA+TGG 0.604823 1_2:-9802258 None:intergenic
AGTAGAAAGAAGGAAAGGGA+GGG 0.605937 1_2:-9802203 None:intergenic
CCGTGCAAGCCATTGACCGG+TGG 0.606475 1_2:-9802892 None:intergenic
GTTGTTGAGCCAGTTAGGTG+TGG 0.606546 1_2:-9802730 None:intergenic
TAGTGAAGGTTATAGTAAAG+GGG 0.612085 1_2:+9805801 Msa0055010:three_prime_UTR
GTGTCAAAACTAATCCCTGA+AGG 0.612852 1_2:+9806237 Msa0055010:three_prime_UTR
TTTGCTCTTCAAGACAGTAG+AGG 0.614890 1_2:-9805636 None:intergenic
AAACAAAGAAGTCTGTTGAG+AGG 0.615706 1_2:+9806012 Msa0055010:three_prime_UTR
GGGTTACAAGGAGAAAATTG+TGG 0.616009 1_2:+9805199 Msa0055010:intron
GTGTTTGAGGATAGCAACGC+CGG 0.619072 1_2:+9803154 Msa0055010:CDS
GCTAACTGAGCATCAATCCT+CGG 0.622785 1_2:-9803188 None:intergenic
GCTATTATAGGTTTATACCA+TGG 0.623092 1_2:-9802481 None:intergenic
GAAATGAAGATAAAATATTG+GGG 0.623884 1_2:-9802319 None:intergenic
AACAGCGACACTGACGGTAA+CGG 0.624558 1_2:+9802822 Msa0055010:CDS
TATTTGGAATGTATGTAAAG+GGG 0.624918 1_2:+9806475 Msa0055010:three_prime_UTR
ACAGGAGTTTCACCTGGAGA+AGG 0.631882 1_2:+9804908 Msa0055010:intron
TTACTTCACCGTGTTGACGG+TGG 0.635014 1_2:-9802923 None:intergenic
GTGTGATGATGTGTATAGAG+TGG 0.637041 1_2:-9802134 None:intergenic
GACAACAACTGTTCATACAA+CGG 0.638324 1_2:-9803119 None:intergenic
ACCCTTCAAGTTCAATACCA+TGG 0.643322 1_2:+9802464 Msa0055010:five_prime_UTR
GATGGCGGTGCGGATAACAT+GGG 0.643909 1_2:+9805004 Msa0055010:CDS
GTTAGCACAGTCTCAGAATG+TGG 0.643950 1_2:+9803205 Msa0055010:CDS
AGTGACGCAAATCTGTTCGA+TGG 0.645362 1_2:+9804974 Msa0055010:CDS
TTTGAGGATAGCAACGCCGG+TGG 0.647198 1_2:+9803157 Msa0055010:CDS
GTAATAACCACTAATCTTAG+GGG 0.651167 1_2:-9805713 None:intergenic
TGACGATGATACGTAGACAC+TGG 0.656338 1_2:-9805948 None:intergenic
TTTGTGTGTGTTAGAAAACA+AGG 0.663445 1_2:-9802513 None:intergenic
TCGATTCTCCACCGTCAACA+CGG 0.669076 1_2:+9802915 Msa0055010:CDS
AATATGAAGGATAACATCGA+CGG 0.669534 1_2:+9802990 Msa0055010:CDS
CGCCGGTGGATCAGTTACCG+AGG 0.669945 1_2:+9803171 Msa0055010:CDS
GAAAATTGTGGACATCAGAG+AGG 0.670705 1_2:+9805211 Msa0055010:CDS
AGTAATCGACAACGTTACCA+TGG 0.672069 1_2:+9802941 Msa0055010:CDS
TCGACGGTGATGGACTTGGG+GGG 0.674235 1_2:+9803006 Msa0055010:CDS
AGCACAGTCTCAGAATGTGG+TGG 0.676786 1_2:+9803208 Msa0055010:CDS
TGTCGGTGTAGTGGGTACGA+AGG 0.706118 1_2:-9802758 None:intergenic
GGTGGCAATCACATTCCAAG+TGG 0.712840 1_2:+9805297 Msa0055010:CDS
TTCACCTGGAGAAGGTACAG+GGG 0.738308 1_2:+9804916 Msa0055010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGTTTTTTTTTTTTTTTT+TGG - chr1_2:9802299-9802318 None:intergenic 10.0%
!! TAATGTATGATTAAAATAAA+AGG - chr1_2:9805177-9805196 None:intergenic 10.0%
!!! TTATTTTAATCATACATTAT+AGG + chr1_2:9805178-9805197 Msa0055010:intron 10.0%
!!! TATTTTAATCATACATTATA+GGG + chr1_2:9805179-9805198 Msa0055010:intron 10.0%
!! TTAAGCAAAAATATAAATAA+CGG - chr1_2:9805486-9805505 None:intergenic 10.0%
!! ATTAGTATAATATAATCATA+AGG - chr1_2:9806432-9806451 None:intergenic 10.0%
!!! GATGTTTTTTTATTTATTGT+GGG - chr1_2:9802350-9802369 None:intergenic 15.0%
!!! TGATGTTTTTTTATTTATTG+TGG - chr1_2:9802351-9802370 None:intergenic 15.0%
!!! GTTTTTTTTGTTAAGTTTTA+TGG + chr1_2:9802554-9802573 Msa0055010:exon 15.0%
!! AAATTAGTAATTAATCCAAA+AGG - chr1_2:9803445-9803464 None:intergenic 15.0%
!!! AAACTAGTACTTTTATATTT+AGG + chr1_2:9805673-9805692 Msa0055010:exon 15.0%
!!! AACTAGTACTTTTATATTTA+GGG + chr1_2:9805674-9805693 Msa0055010:exon 15.0%
!! TTTATGTTTGTATAATATTG+AGG + chr1_2:9806366-9806385 Msa0055010:three_prime_UTR 15.0%
!! TTATGTTTGTATAATATTGA+GGG + chr1_2:9806367-9806386 Msa0055010:three_prime_UTR 15.0%
!! GAAATGAAGATAAAATATTG+GGG - chr1_2:9802322-9802341 None:intergenic 20.0%
!! GGAAATGAAGATAAAATATT+GGG - chr1_2:9802323-9802342 None:intergenic 20.0%
!! AGGAAATGAAGATAAAATAT+TGG - chr1_2:9802324-9802343 None:intergenic 20.0%
!! AAAAAGAATATACCATGAAA+TGG - chr1_2:9803280-9803299 None:intergenic 20.0%
!! AAAAAGAACAATGAGATAAA+TGG - chr1_2:9803347-9803366 None:intergenic 20.0%
!! TTTCTTGTAACAAAAATTTG+TGG - chr1_2:9803390-9803409 None:intergenic 20.0%
!!! AATAACAATTTTTCTGTTTG+TGG + chr1_2:9803412-9803431 Msa0055010:intron 20.0%
!!! CTTATTATTACAGTTGTTTT+TGG + chr1_2:9803492-9803511 Msa0055010:intron 20.0%
!!! AATTGGTTTGTATTTTATGT+TGG + chr1_2:9803544-9803563 Msa0055010:intron 20.0%
!! AGTTGAACAGAATTAAAATT+TGG + chr1_2:9803567-9803586 Msa0055010:intron 20.0%
!!! ATTAAAATTTGGTAGTTTTG+TGG + chr1_2:9803578-9803597 Msa0055010:intron 20.0%
!!! ATGAAAATGCAATTTTGAAT+TGG + chr1_2:9803643-9803662 Msa0055010:intron 20.0%
!!! TTGTGATTTCAATGTATTTT+TGG + chr1_2:9803681-9803700 Msa0055010:intron 20.0%
!! TTTGAATTTATGAGAAATCA+TGG + chr1_2:9803743-9803762 Msa0055010:intron 20.0%
!! TTGAATTTATGAGAAATCAT+GGG + chr1_2:9803744-9803763 Msa0055010:intron 20.0%
!!! CTAGATTTTATTACCAAATA+AGG + chr1_2:9803996-9804015 Msa0055010:intron 20.0%
!!! ATCATTTTTACTTGTCAAAT+AGG - chr1_2:9804867-9804886 None:intergenic 20.0%
!! GGAATAGTTATTAAAAAGAA+GGG - chr1_2:9805140-9805159 None:intergenic 20.0%
!! AACTAAAGCAAATTAATAAC+TGG + chr1_2:9805570-9805589 Msa0055010:CDS 20.0%
!! ATGTAATTTCAGTAAAGAAA+GGG + chr1_2:9806066-9806085 Msa0055010:three_prime_UTR 20.0%
!! TAATAAACATTCATCTTAAG+AGG + chr1_2:9806098-9806117 Msa0055010:three_prime_UTR 20.0%
!! TAGTATAATGCTACATAATT+AGG + chr1_2:9806267-9806286 Msa0055010:three_prime_UTR 20.0%
!! TACTATATGCTAAAACAAAT+TGG + chr1_2:9806294-9806313 Msa0055010:three_prime_UTR 20.0%
!! ACTATATGCTAAAACAAATT+GGG + chr1_2:9806295-9806314 Msa0055010:three_prime_UTR 20.0%
!! TATGTTTGTATAATATTGAG+GGG + chr1_2:9806368-9806387 Msa0055010:three_prime_UTR 20.0%
!!! GTTGTTTTTGTTCTTTAAAT+TGG + chr1_2:9806452-9806471 Msa0055010:three_prime_UTR 20.0%
!! TTGTTCTTTAAATTGGTATT+TGG + chr1_2:9806459-9806478 Msa0055010:three_prime_UTR 20.0%
!!! TTTTTATTTATTGTGGGACT+AGG - chr1_2:9802344-9802363 None:intergenic 25.0%
! ATAAATGGCAAAGAAATTTG+AGG - chr1_2:9803332-9803351 None:intergenic 25.0%
!!! CAGTTGTTTTTGGATTTTTA+TGG + chr1_2:9803502-9803521 Msa0055010:intron 25.0%
! ATGGAATCATGTGATAAATA+TGG + chr1_2:9803521-9803540 Msa0055010:intron 25.0%
! TCATGTGATAAATATGGAAT+TGG + chr1_2:9803527-9803546 Msa0055010:intron 25.0%
! TGAATTTATGAGAAATCATG+GGG + chr1_2:9803745-9803764 Msa0055010:intron 25.0%
!!! ATGAGATTTTTTTTGTACAG+AGG + chr1_2:9803847-9803866 Msa0055010:intron 25.0%
!!! TGAGATTTTTTTTGTACAGA+GGG + chr1_2:9803848-9803867 Msa0055010:intron 25.0%
! GTTTATTCAAAAACTGGAAA+GGG - chr1_2:9803890-9803909 None:intergenic 25.0%
! TGTTTATTCAAAAACTGGAA+AGG - chr1_2:9803891-9803910 None:intergenic 25.0%
!! TTTAAAACAGAACTAAGAGA+AGG - chr1_2:9803948-9803967 None:intergenic 25.0%
!! TTTTATTACCAAATAAGGAG+CGG + chr1_2:9804001-9804020 Msa0055010:intron 25.0%
!!! GTTAATTACATTTTAGTCAC+TGG - chr1_2:9804081-9804100 None:intergenic 25.0%
!!! ACATTTTTTTTGTACCTGTT+AGG - chr1_2:9804312-9804331 None:intergenic 25.0%
!! ATGATGGAATGAAAATAACT+TGG + chr1_2:9804383-9804402 Msa0055010:intron 25.0%
! TAATCAAGGGAACATAATAT+AGG - chr1_2:9804435-9804454 None:intergenic 25.0%
!! TTTAGTAATTCTGTCTGTTT+TGG + chr1_2:9804465-9804484 Msa0055010:intron 25.0%
! TCCAATCAAACCTAAAAAAT+GGG - chr1_2:9804803-9804822 None:intergenic 25.0%
! GGGAATAGTTATTAAAAAGA+AGG - chr1_2:9805141-9805160 None:intergenic 25.0%
! TATATAGTTAAACGTACTGT+TGG - chr1_2:9805329-9805348 None:intergenic 25.0%
!! TAATGTATTATGTGCTTTTC+AGG + chr1_2:9805508-9805527 Msa0055010:intron 25.0%
!! ATAACTGGTTTATCAATCAA+AGG + chr1_2:9805585-9805604 Msa0055010:CDS 25.0%
! TGTAATAACCACTAATCTTA+GGG - chr1_2:9805717-9805736 None:intergenic 25.0%
! TAAAAATAACAAAGCAAGAG+AGG - chr1_2:9805773-9805792 None:intergenic 25.0%
!!! TCTCTTGCTTTGTTATTTTT+AGG + chr1_2:9805772-9805791 Msa0055010:three_prime_UTR 25.0%
!!! CTCTTGCTTTGTTATTTTTA+GGG + chr1_2:9805773-9805792 Msa0055010:three_prime_UTR 25.0%
! TTAGTGAAGGTTATAGTAAA+GGG + chr1_2:9805800-9805819 Msa0055010:three_prime_UTR 25.0%
! GATGTAATTTCAGTAAAGAA+AGG + chr1_2:9806065-9806084 Msa0055010:three_prime_UTR 25.0%
!!! TCTAGTGTTATTAGTCTTTT+TGG + chr1_2:9806121-9806140 Msa0055010:three_prime_UTR 25.0%
! ATGTTTGTATAATATTGAGG+GGG + chr1_2:9806369-9806388 Msa0055010:three_prime_UTR 25.0%
!! GTATTTGGAATGTATGTAAA+GGG + chr1_2:9806474-9806493 Msa0055010:three_prime_UTR 25.0%
!! TATTTGGAATGTATGTAAAG+GGG + chr1_2:9806475-9806494 Msa0055010:three_prime_UTR 25.0%
ATCATCACACATACTTTGTT+TGG + chr1_2:9802147-9802166 Msa0055010:five_prime_UTR 30.0%
GAGAAAATATGACAAGACAA+TGG - chr1_2:9802261-9802280 None:intergenic 30.0%
! TTTGTGATGTTTTGTGTTGT+TGG - chr1_2:9802396-9802415 None:intergenic 30.0%
GCTATTATAGGTTTATACCA+TGG - chr1_2:9802484-9802503 None:intergenic 30.0%
TTTGTGTGTGTTAGAAAACA+AGG - chr1_2:9802516-9802535 None:intergenic 30.0%
! TGTTGTTATTGTTGTTGGTT+TGG - chr1_2:9802632-9802651 None:intergenic 30.0%
! TGAGTTGTTGTTATTGTTGT+TGG - chr1_2:9802637-9802656 None:intergenic 30.0%
! ATTGTTGTTGTTGTTGTTGT+CGG - chr1_2:9802778-9802797 None:intergenic 30.0%
AATATGAAGGATAACATCGA+CGG + chr1_2:9802990-9803009 Msa0055010:CDS 30.0%
!!! AATTTGGTAGTTTTGTGGTA+TGG + chr1_2:9803583-9803602 Msa0055010:intron 30.0%
! AAATGCAATTTTGAATTGGC+TGG + chr1_2:9803647-9803666 Msa0055010:intron 30.0%
!!! AATTTTGAATTGGCTGGTTT+TGG + chr1_2:9803653-9803672 Msa0055010:intron 30.0%
!!! ATTTTGAATTGGCTGGTTTT+GGG + chr1_2:9803654-9803673 Msa0055010:intron 30.0%
GAATTTATGAGAAATCATGG+GGG + chr1_2:9803746-9803765 Msa0055010:intron 30.0%
!!! GAGATTTTTTTTGTACAGAG+GGG + chr1_2:9803849-9803868 Msa0055010:intron 30.0%
GAGTGTGTTTATTCAAAAAC+TGG - chr1_2:9803896-9803915 None:intergenic 30.0%
!!! GGTGTACTTTTGATTTAGAA+TGG + chr1_2:9804022-9804041 Msa0055010:intron 30.0%
TTGTTGCAATTGTTCTTTGA+AGG - chr1_2:9804224-9804243 None:intergenic 30.0%
!! TAAAGCTTTGTTGCATATGA+TGG + chr1_2:9804367-9804386 Msa0055010:intron 30.0%
AAAAGTGAGTACAGAAAATG+TGG - chr1_2:9804410-9804429 None:intergenic 30.0%
AAAAGCAGCAACATAATCAA+GGG - chr1_2:9804448-9804467 None:intergenic 30.0%
TAAAAGCAGCAACATAATCA+AGG - chr1_2:9804449-9804468 None:intergenic 30.0%
!! GTGTTTGAAGAAAGTATCAA+AGG + chr1_2:9804557-9804576 Msa0055010:intron 30.0%
TGTTAGCTAATTGAACAGTT+GGG - chr1_2:9804633-9804652 None:intergenic 30.0%
ATGTTAGCTAATTGAACAGT+TGG - chr1_2:9804634-9804653 None:intergenic 30.0%
! TGACCTACTTTGAAAATCTT+AGG + chr1_2:9804748-9804767 Msa0055010:intron 30.0%
GTCCAATCAAACCTAAAAAA+TGG - chr1_2:9804804-9804823 None:intergenic 30.0%
! GTTTGATTGGACCTTTTTAA+AGG + chr1_2:9804812-9804831 Msa0055010:intron 30.0%
AAATATACTTCAGCCTTCAT+CGG - chr1_2:9804839-9804858 None:intergenic 30.0%
TTATACCAACAGAGAATGAA+AGG + chr1_2:9805038-9805057 Msa0055010:CDS 30.0%
AGCATGAATTGAAACATGTA+AGG + chr1_2:9805092-9805111 Msa0055010:intron 30.0%
GCATGAATTGAAACATGTAA+GGG + chr1_2:9805093-9805112 Msa0055010:intron 30.0%
TAAAAGGAGATGAATCATGT+GGG - chr1_2:9805161-9805180 None:intergenic 30.0%
ATAAAAGGAGATGAATCATG+TGG - chr1_2:9805162-9805181 None:intergenic 30.0%
TCATACATTATAGGGTTACA+AGG + chr1_2:9805187-9805206 Msa0055010:intron 30.0%
GTAATAACCACTAATCTTAG+GGG - chr1_2:9805716-9805735 None:intergenic 30.0%
GTGTAATAACCACTAATCTT+AGG - chr1_2:9805718-9805737 None:intergenic 30.0%
TGTGATTTCCTTAACAAGAA+GGG - chr1_2:9805746-9805765 None:intergenic 30.0%
ATGTGATTTCCTTAACAAGA+AGG - chr1_2:9805747-9805766 None:intergenic 30.0%
CTTAGTGAAGGTTATAGTAA+AGG + chr1_2:9805799-9805818 Msa0055010:three_prime_UTR 30.0%
TAGTGAAGGTTATAGTAAAG+GGG + chr1_2:9805801-9805820 Msa0055010:three_prime_UTR 30.0%
ATGTAGCATTATACTAAAGC+AGG - chr1_2:9806263-9806282 None:intergenic 30.0%
TGTTTGTATAATATTGAGGG+GGG + chr1_2:9806370-9806389 Msa0055010:three_prime_UTR 30.0%
! GGTATTTGGAATGTATGTAA+AGG + chr1_2:9806473-9806492 Msa0055010:three_prime_UTR 30.0%
TAGAATGTGGAGTAGAAAGA+AGG - chr1_2:9802216-9802235 None:intergenic 35.0%
TATGACAAGACAATGGAAGA+TGG - chr1_2:9802254-9802273 None:intergenic 35.0%
!! TTTGTGTTGTTGGTTTGGTT+GGG - chr1_2:9802386-9802405 None:intergenic 35.0%
!!! TTTTGTGTTGTTGGTTTGGT+TGG - chr1_2:9802387-9802406 None:intergenic 35.0%
!! GATGTTTTGTGTTGTTGGTT+TGG - chr1_2:9802391-9802410 None:intergenic 35.0%
! ACCATGGTATTGAACTTGAA+GGG - chr1_2:9802468-9802487 None:intergenic 35.0%
! TACCATGGTATTGAACTTGA+AGG - chr1_2:9802469-9802488 None:intergenic 35.0%
AGGTACTAGGTAGCTATTAT+AGG - chr1_2:9802496-9802515 None:intergenic 35.0%
! GTGTTAGAAAACAAGGTACT+AGG - chr1_2:9802509-9802528 None:intergenic 35.0%
CAAACATACACACACTTGTT+TGG + chr1_2:9802532-9802551 Msa0055010:five_prime_UTR 35.0%
!!! CTTGTGAAAGATGTTGGTTT+TGG - chr1_2:9802584-9802603 None:intergenic 35.0%
GCACGAGTTAAGTAATATGA+AGG + chr1_2:9802977-9802996 Msa0055010:CDS 35.0%
GACAACAACTGTTCATACAA+CGG - chr1_2:9803122-9803141 None:intergenic 35.0%
GTTGTATGAACAGTTGTTGT+CGG + chr1_2:9803121-9803140 Msa0055010:CDS 35.0%
CAAAGAACTTGACCATTTCA+TGG + chr1_2:9803265-9803284 Msa0055010:CDS 35.0%
!!! GTTTGTGGTTTTAGTCCTTT+TGG + chr1_2:9803427-9803446 Msa0055010:intron 35.0%
! TTTTTGGATGATTGCTCAAG+TGG + chr1_2:9803697-9803716 Msa0055010:intron 35.0%
! TTTTGGATGATTGCTCAAGT+GGG + chr1_2:9803698-9803717 Msa0055010:intron 35.0%
GTCTCTTGTAAGACTATACA+AGG + chr1_2:9804487-9804506 Msa0055010:intron 35.0%
GTTAGCTAATTGAACAGTTG+GGG - chr1_2:9804632-9804651 None:intergenic 35.0%
ATCTTCCAAGAATACAAGCA+GGG + chr1_2:9804686-9804705 Msa0055010:intron 35.0%
! AGGCCTAAGATTTTCAAAGT+AGG - chr1_2:9804754-9804773 None:intergenic 35.0%
ATGGGCCTATAAGAGATAAT+AGG - chr1_2:9804785-9804804 None:intergenic 35.0%
!!! CTCTTATAGGCCCATTTTTT+AGG + chr1_2:9804790-9804809 Msa0055010:intron 35.0%
!!! GCCCATTTTTTAGGTTTGAT+TGG + chr1_2:9804799-9804818 Msa0055010:intron 35.0%
CATTCTCTGTTGGTATAAGA+GGG - chr1_2:9805036-9805055 None:intergenic 35.0%
TCATTCTCTGTTGGTATAAG+AGG - chr1_2:9805037-9805056 None:intergenic 35.0%
GTTAAACGTACTGTTGGATA+TGG - chr1_2:9805323-9805342 None:intergenic 35.0%
!! TGTATTATGTGCTTTTCAGG+AGG + chr1_2:9805511-9805530 Msa0055010:intron 35.0%
GGTTTATCAATCAAAGGAAG+AGG + chr1_2:9805591-9805610 Msa0055010:CDS 35.0%
!! TTTTTAGGGAGACTTAGTGA+AGG + chr1_2:9805787-9805806 Msa0055010:three_prime_UTR 35.0%
AAACAAAGAAGTCTGTTGAG+AGG + chr1_2:9806012-9806031 Msa0055010:three_prime_UTR 35.0%
AAGAGCAGCATTCAAAGTAA+AGG + chr1_2:9806037-9806056 Msa0055010:three_prime_UTR 35.0%
TACTTGCTTCAGATTAGCAT+TGG - chr1_2:9806173-9806192 None:intergenic 35.0%
! TAATCTGAAGCAAGTACAAC+AGG + chr1_2:9806177-9806196 Msa0055010:three_prime_UTR 35.0%
! TATAATATTGAGGGGGGTAT+AGG + chr1_2:9806376-9806395 Msa0055010:three_prime_UTR 35.0%
! GTGTGATGATGTGTATAGAG+TGG - chr1_2:9802137-9802156 None:intergenic 40.0%
AGTAGAAAGAAGGAAAGGGA+GGG - chr1_2:9802206-9802225 None:intergenic 40.0%
GTGGAGTAGAAAGAAGGAAA+GGG - chr1_2:9802210-9802229 None:intergenic 40.0%
TGTGGAGTAGAAAGAAGGAA+AGG - chr1_2:9802211-9802230 None:intergenic 40.0%
AATGGAAGATGGAGAAGAAG+GGG - chr1_2:9802243-9802262 None:intergenic 40.0%
CAATGGAAGATGGAGAAGAA+GGG - chr1_2:9802244-9802263 None:intergenic 40.0%
ACAATGGAAGATGGAGAAGA+AGG - chr1_2:9802245-9802264 None:intergenic 40.0%
! ACCCTTCAAGTTCAATACCA+TGG + chr1_2:9802464-9802483 Msa0055010:five_prime_UTR 40.0%
GCAACTCTTGTGAAAGATGT+TGG - chr1_2:9802590-9802609 None:intergenic 40.0%
TGGTCTGTGAAATGTTGGAT+TGG - chr1_2:9802612-9802631 None:intergenic 40.0%
!! TGGTTTGGTCTGTGAAATGT+TGG - chr1_2:9802617-9802636 None:intergenic 40.0%
! TGGTTTGGAGTTGGTTATTG+GGG - chr1_2:9802713-9802732 None:intergenic 40.0%
! GTGGTTTGGAGTTGGTTATT+GGG - chr1_2:9802714-9802733 None:intergenic 40.0%
! TGTGGTTTGGAGTTGGTTAT+TGG - chr1_2:9802715-9802734 None:intergenic 40.0%
AGTAATCGACAACGTTACCA+TGG + chr1_2:9802941-9802960 Msa0055010:CDS 40.0%
GAATGGATACTTGATGTGCA+GGG + chr1_2:9803720-9803739 Msa0055010:intron 40.0%
TTTATGAGAAATCATGGGGG+TGG + chr1_2:9803749-9803768 Msa0055010:intron 40.0%
AAAGTACACCGCTCCTTATT+TGG - chr1_2:9804012-9804031 None:intergenic 40.0%
CAATCCTTACAAAGCCTAAC+AGG + chr1_2:9804295-9804314 Msa0055010:CDS 40.0%
! TGTACCTGTTAGGCTTTGTA+AGG - chr1_2:9804302-9804321 None:intergenic 40.0%
TTGCAAAGTTGCAATGCATG+TGG - chr1_2:9804513-9804532 None:intergenic 40.0%
CATCTTCCAAGAATACAAGC+AGG + chr1_2:9804685-9804704 Msa0055010:intron 40.0%
TCTTCCAAGAATACAAGCAG+GGG + chr1_2:9804687-9804706 Msa0055010:intron 40.0%
! GCTGGCCTATTATCTCTTAT+AGG + chr1_2:9804777-9804796 Msa0055010:intron 40.0%
! CCTTCATCGGACCTTTAAAA+AGG - chr1_2:9804826-9804845 None:intergenic 40.0%
!! CCTTTTTAAAGGTCCGATGA+AGG + chr1_2:9804823-9804842 Msa0055010:intron 40.0%
!!! CTGTTCGATGGTAGTTTTGA+TGG + chr1_2:9804986-9805005 Msa0055010:CDS 40.0%
!!! TTCGATGGTAGTTTTGATGG+CGG + chr1_2:9804989-9805008 Msa0055010:CDS 40.0%
AGAGAATGAAAGGTCCCTAA+TGG + chr1_2:9805048-9805067 Msa0055010:CDS 40.0%
TTGTCTTACACGCTCCATTA+GGG - chr1_2:9805065-9805084 None:intergenic 40.0%
GGGTTACAAGGAGAAAATTG+TGG + chr1_2:9805199-9805218 Msa0055010:intron 40.0%
GAAAATTGTGGACATCAGAG+AGG + chr1_2:9805211-9805230 Msa0055010:CDS 40.0%
TGACACAACTTCTGTCCTTA+AGG + chr1_2:9805271-9805290 Msa0055010:CDS 40.0%
! CACATGGACTAATGTGCATT+GGG - chr1_2:9805433-9805452 None:intergenic 40.0%
! ACACATGGACTAATGTGCAT+TGG - chr1_2:9805434-9805453 None:intergenic 40.0%
ATGCACATTAGTCCATGTGT+TGG + chr1_2:9805434-9805453 Msa0055010:intron 40.0%
TTCAGGAGGAAGATAAAGCA+AGG + chr1_2:9805525-9805544 Msa0055010:intron 40.0%
TCAATCAAAGGAAGAGGAAC+TGG + chr1_2:9805597-9805616 Msa0055010:CDS 40.0%
TTCAAGACAGTAGAGGTTGA+AGG - chr1_2:9805632-9805651 None:intergenic 40.0%
TTTGCTCTTCAAGACAGTAG+AGG - chr1_2:9805639-9805658 None:intergenic 40.0%
TCTTGAAGAGCAAACGCAAA+AGG + chr1_2:9805645-9805664 Msa0055010:CDS 40.0%
GTACCAACACTACAGATTGA+AGG + chr1_2:9805841-9805860 Msa0055010:three_prime_UTR 40.0%
GTGTCAAAACTAATCCCTGA+AGG + chr1_2:9806237-9806256 Msa0055010:three_prime_UTR 40.0%
TATACTAAAGCAGGCCTTCA+GGG - chr1_2:9806254-9806273 None:intergenic 40.0%
TTATACTAAAGCAGGCCTTC+AGG - chr1_2:9806255-9806274 None:intergenic 40.0%
AGAAGGGACGTTGTTGTGAT+CGG - chr1_2:9802182-9802201 None:intergenic 45.0%
GAGTAGAAAGAAGGAAAGGG+AGG - chr1_2:9802207-9802226 None:intergenic 45.0%
! ATCAGGTTTGGAGTTAGGGT+CGG - chr1_2:9802685-9802704 None:intergenic 45.0%
! CGGAATCAGGTTTGGAGTTA+GGG - chr1_2:9802689-9802708 None:intergenic 45.0%
! TCGGAATCAGGTTTGGAGTT+AGG - chr1_2:9802690-9802709 None:intergenic 45.0%
! TTGGAGTTGGTTATTGGGGT+CGG - chr1_2:9802709-9802728 None:intergenic 45.0%
! AGTTAGGTGTGGTTTGGAGT+TGG - chr1_2:9802722-9802741 None:intergenic 45.0%
AACTCCAAACCACACCTAAC+TGG + chr1_2:9802721-9802740 Msa0055010:CDS 45.0%
ATAGCGTTGTTGAGCCAGTT+AGG - chr1_2:9802738-9802757 None:intergenic 45.0%
! GTTGTTGTTGTCGGTGTAGT+GGG - chr1_2:9802769-9802788 None:intergenic 45.0%
! TGTTGTTGTTGTCGGTGTAG+TGG - chr1_2:9802770-9802789 None:intergenic 45.0%
! AGTGTCGCTGTTAACGTTGT+TGG - chr1_2:9802814-9802833 None:intergenic 45.0%
AACGTTAACAGCGACACTGA+CGG + chr1_2:9802816-9802835 Msa0055010:CDS 45.0%
CGATTACTTCACCGTGTTGA+CGG - chr1_2:9802929-9802948 None:intergenic 45.0%
TAACTCGTGCTCTACTTCTC+CGG - chr1_2:9802967-9802986 None:intergenic 45.0%
AAGGATAACATCGACGGTGA+TGG + chr1_2:9802996-9803015 Msa0055010:CDS 45.0%
GCTAACTGAGCATCAATCCT+CGG - chr1_2:9803191-9803210 None:intergenic 45.0%
GTTAGCACAGTCTCAGAATG+TGG + chr1_2:9803205-9803224 Msa0055010:CDS 45.0%
! ACCACCAAACGCAGAGTATT+TGG - chr1_2:9803234-9803253 None:intergenic 45.0%
! AAATACTCTGCGTTTGGTGG+TGG + chr1_2:9803233-9803252 Msa0055010:CDS 45.0%
GATGATTGCTCAAGTGGGAA+TGG + chr1_2:9803703-9803722 Msa0055010:intron 45.0%
GGAATGGATACTTGATGTGC+AGG + chr1_2:9803719-9803738 Msa0055010:intron 45.0%
GTGTGACTGCAACATCAAGA+AGG - chr1_2:9804182-9804201 None:intergenic 45.0%
CCATTACAGCTTCCATTGCA+TGG - chr1_2:9804258-9804277 None:intergenic 45.0%
CCATGCAATGGAAGCTGTAA+TGG + chr1_2:9804255-9804274 Msa0055010:CDS 45.0%
! TGGAAGCTGTAATGGCTTGT+TGG + chr1_2:9804263-9804282 Msa0055010:CDS 45.0%
!! GGAAGCTGTAATGGCTTGTT+GGG + chr1_2:9804264-9804283 Msa0055010:CDS 45.0%
! AGACTAGACAAGGCTTTGTG+AGG + chr1_2:9804717-9804736 Msa0055010:intron 45.0%
GAAAATCTTAGGCCTGAAGC+TGG + chr1_2:9804759-9804778 Msa0055010:intron 45.0%
AGAGATAATAGGCCAGCTTC+AGG - chr1_2:9804774-9804793 None:intergenic 45.0%
TTTCTCATCGCTGCATGAAC+AGG + chr1_2:9804890-9804909 Msa0055010:intron 45.0%
! TTTCACCTGGAGAAGGTACA+GGG + chr1_2:9804915-9804934 Msa0055010:CDS 45.0%
GTCTGACGATGAAGATGAAC+AGG + chr1_2:9804946-9804965 Msa0055010:CDS 45.0%
AGTGACGCAAATCTGTTCGA+TGG + chr1_2:9804974-9804993 Msa0055010:CDS 45.0%
AGGGACCTTTCATTCTCTGT+TGG - chr1_2:9805046-9805065 None:intergenic 45.0%
CTTGTCTTACACGCTCCATT+AGG - chr1_2:9805066-9805085 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG + chr1_2:9805236-9805255 Msa0055010:CDS 45.0%
! TTTTACGCAAGAGACGAGCT+GGG + chr1_2:9805237-9805256 Msa0055010:CDS 45.0%
CAACTTCTGTCCTTAAGGCT+TGG + chr1_2:9805276-9805295 Msa0055010:CDS 45.0%
TACTGTTGGATATGGCCACT+TGG - chr1_2:9805315-9805334 None:intergenic 45.0%
CTTTCTGTGATGCCAACACA+TGG - chr1_2:9805449-9805468 None:intergenic 45.0%
GGAGGAAGATAAAGCAAGGT+TGG + chr1_2:9805529-9805548 Msa0055010:intron 45.0%
!! AGATAAAGCAAGGTTGGTGC+AGG + chr1_2:9805535-9805554 Msa0055010:CDS 45.0%
CCACTAATCTTAGGGGAGTT+TGG - chr1_2:9805709-9805728 None:intergenic 45.0%
CCAAACTCCCCTAAGATTAG+TGG + chr1_2:9805706-9805725 Msa0055010:three_prime_UTR 45.0%
ACGCCTTCAATCTGTAGTGT+TGG - chr1_2:9805847-9805866 None:intergenic 45.0%
TGACGATGATACGTAGACAC+TGG - chr1_2:9805951-9805970 None:intergenic 45.0%
GTGTCTGTGTCAATGCTTCA+TGG + chr1_2:9805976-9805995 Msa0055010:three_prime_UTR 45.0%
GAAGGAAAGGGAGGGAAGAA+GGG - chr1_2:9802198-9802217 None:intergenic 50.0%
AGAAGGAAAGGGAGGGAAGA+AGG - chr1_2:9802199-9802218 None:intergenic 50.0%
AAGAAGGGGAGGGTAGAATG+TGG - chr1_2:9802229-9802248 None:intergenic 50.0%
GAAGATGGAGAAGAAGGGGA+GGG - chr1_2:9802239-9802258 None:intergenic 50.0%
GTCGGGTGAGTCTGGTAATA+TGG - chr1_2:9802667-9802686 None:intergenic 50.0%
! TCAGGTTTGGAGTTAGGGTC+GGG - chr1_2:9802684-9802703 None:intergenic 50.0%
ATTGGGGTCGGAATCAGGTT+TGG - chr1_2:9802697-9802716 None:intergenic 50.0%
TGGTTATTGGGGTCGGAATC+AGG - chr1_2:9802702-9802721 None:intergenic 50.0%
TGAGCCAGTTAGGTGTGGTT+TGG - chr1_2:9802728-9802747 None:intergenic 50.0%
GTTGTTGAGCCAGTTAGGTG+TGG - chr1_2:9802733-9802752 None:intergenic 50.0%
AACAGCGACACTGACGGTAA+CGG + chr1_2:9802822-9802841 Msa0055010:CDS 50.0%
!! CGGTGTCGGAAGTTTGTTGA+AGG - chr1_2:9802866-9802885 None:intergenic 50.0%
TCGATTCTCCACCGTCAACA+CGG + chr1_2:9802915-9802934 Msa0055010:CDS 50.0%
! TTACTTCACCGTGTTGACGG+TGG - chr1_2:9802926-9802945 None:intergenic 50.0%
ATCGACAACGTTACCATGGC+CGG + chr1_2:9802945-9802964 Msa0055010:CDS 50.0%
!! AACATCGACGGTGATGGACT+TGG + chr1_2:9803002-9803021 Msa0055010:CDS 50.0%
!! ACATCGACGGTGATGGACTT+GGG + chr1_2:9803003-9803022 Msa0055010:CDS 50.0%
!! TGGATTGGTGAACTGGCAGA+TGG + chr1_2:9803067-9803086 Msa0055010:CDS 50.0%
! GGATTGGTGAACTGGCAGAT+GGG + chr1_2:9803068-9803087 Msa0055010:CDS 50.0%
GATTGGTGAACTGGCAGATG+GGG + chr1_2:9803069-9803088 Msa0055010:CDS 50.0%
ACAGTTGTTGTCGGCACATG+TGG + chr1_2:9803130-9803149 Msa0055010:CDS 50.0%
GTGTTTGAGGATAGCAACGC+CGG + chr1_2:9803154-9803173 Msa0055010:CDS 50.0%
ATCCTCGGTAACTGATCCAC+CGG - chr1_2:9803176-9803195 None:intergenic 50.0%
AGCACAGTCTCAGAATGTGG+TGG + chr1_2:9803208-9803227 Msa0055010:CDS 50.0%
GTGGCCAAATACTCTGCGTT+TGG + chr1_2:9803227-9803246 Msa0055010:CDS 50.0%
GCCAAATACTCTGCGTTTGG+TGG + chr1_2:9803230-9803249 Msa0055010:CDS 50.0%
ATGAGAAATCATGGGGGTGG+AGG + chr1_2:9803752-9803771 Msa0055010:intron 50.0%
TGAGAAATCATGGGGGTGGA+GGG + chr1_2:9803753-9803772 Msa0055010:intron 50.0%
GGGCAGGATTAGACTAGACA+AGG + chr1_2:9804707-9804726 Msa0055010:intron 50.0%
GCATGAACAGGAGTTTCACC+TGG + chr1_2:9804902-9804921 Msa0055010:intron 50.0%
ACAGGAGTTTCACCTGGAGA+AGG + chr1_2:9804908-9804927 Msa0055010:intron 50.0%
! GTTTCACCTGGAGAAGGTAC+AGG + chr1_2:9804914-9804933 Msa0055010:CDS 50.0%
! TTCACCTGGAGAAGGTACAG+GGG + chr1_2:9804916-9804935 Msa0055010:CDS 50.0%
!!! TGGTAGTTTTGATGGCGGTG+CGG + chr1_2:9804994-9805013 Msa0055010:CDS 50.0%
GGTGCGGATAACATGGGATT+TGG + chr1_2:9805010-9805029 Msa0055010:CDS 50.0%
AGGACAGAAGTTGTGTCACC+AGG - chr1_2:9805269-9805288 None:intergenic 50.0%
CTTCTGTCCTTAAGGCTTGG+TGG + chr1_2:9805279-9805298 Msa0055010:CDS 50.0%
GTGATTGCCACCAAGCCTTA+AGG - chr1_2:9805289-9805308 None:intergenic 50.0%
GGTGGCAATCACATTCCAAG+TGG + chr1_2:9805297-9805316 Msa0055010:CDS 50.0%
CACTGACGCCCTTCTTGTTA+AGG + chr1_2:9805735-9805754 Msa0055010:three_prime_UTR 50.0%
GGAAGATGGAGAAGAAGGGG+AGG - chr1_2:9802240-9802259 None:intergenic 55.0%
!! TGTCGGTGTAGTGGGTACGA+AGG - chr1_2:9802761-9802780 None:intergenic 55.0%
! CCATTGACCGGTGGTTTGCA+CGG - chr1_2:9802886-9802905 None:intergenic 55.0%
!! CATCGACGGTGATGGACTTG+GGG + chr1_2:9803004-9803023 Msa0055010:CDS 55.0%
!! ATCGACGGTGATGGACTTGG+GGG + chr1_2:9803005-9803024 Msa0055010:CDS 55.0%
!! GAGGAGCTGGATTGGTGAAC+TGG + chr1_2:9803060-9803079 Msa0055010:CDS 55.0%
GAGGTGGAAGGCGGAGATAA+TGG + chr1_2:9803091-9803110 Msa0055010:CDS 55.0%
TTTGAGGATAGCAACGCCGG+TGG + chr1_2:9803157-9803176 Msa0055010:CDS 55.0%
ACATGTCCGCGTCCATGCAA+TGG + chr1_2:9804243-9804262 Msa0055010:CDS 55.0%
CAGCTTCCATTGCATGGACG+CGG - chr1_2:9804252-9804271 None:intergenic 55.0%
CCTGCCCCTGCTTGTATTCT+TGG - chr1_2:9804694-9804713 None:intergenic 55.0%
CCAAGAATACAAGCAGGGGC+AGG + chr1_2:9804691-9804710 Msa0055010:intron 55.0%
!! TGATGGCGGTGCGGATAACA+TGG + chr1_2:9805003-9805022 Msa0055010:CDS 55.0%
! GATGGCGGTGCGGATAACAT+GGG + chr1_2:9805004-9805023 Msa0055010:CDS 55.0%
AGACGAGCTGGGAAACTTCC+TGG + chr1_2:9805248-9805267 Msa0055010:CDS 55.0%
!! GCAAGGTTGGTGCAGGAAAC+TGG + chr1_2:9805542-9805561 Msa0055010:CDS 55.0%
GAGTTAGGGTCGGGTGAGTC+TGG - chr1_2:9802675-9802694 None:intergenic 60.0%
TCCGACACCGTGCAAACCAC+CGG + chr1_2:9802876-9802895 Msa0055010:CDS 60.0%
! ACCGGTGGTTTGCACGGTGT+CGG - chr1_2:9802880-9802899 None:intergenic 60.0%
CCGTGCAAACCACCGGTCAA+TGG + chr1_2:9802883-9802902 Msa0055010:CDS 60.0%
! CCACCGGTCAATGGCTTGCA+CGG + chr1_2:9802892-9802911 Msa0055010:CDS 60.0%
CGACCGTGCAAGCCATTGAC+CGG - chr1_2:9802898-9802917 None:intergenic 60.0%
GTGCTCTACTTCTCCGGCCA+TGG - chr1_2:9802961-9802980 None:intergenic 60.0%
!! TCGACGGTGATGGACTTGGG+GGG + chr1_2:9803006-9803025 Msa0055010:CDS 60.0%
TGGACTTGGGGGGAAGAGTG+AGG + chr1_2:9803016-9803035 Msa0055010:CDS 60.0%
ACTTGGGGGGAAGAGTGAGG+TGG + chr1_2:9803019-9803038 Msa0055010:CDS 60.0%
! AAGAGTGAGGTGGCGGTGGA+TGG + chr1_2:9803029-9803048 Msa0055010:CDS 60.0%
AGACGGAGGAGGAGCTGGAT+TGG + chr1_2:9803052-9803071 Msa0055010:CDS 60.0%
TGGTGAACTGGCAGATGGGG+AGG + chr1_2:9803072-9803091 Msa0055010:CDS 60.0%
TGAACTGGCAGATGGGGAGG+TGG + chr1_2:9803075-9803094 Msa0055010:CDS 60.0%
CGGCACATGTGGCGTGTTTG+AGG + chr1_2:9803141-9803160 Msa0055010:CDS 60.0%
GTTGCCCCTGTACCTTCTCC+AGG - chr1_2:9804923-9804942 None:intergenic 60.0%
CCGTGCAAGCCATTGACCGG+TGG - chr1_2:9802895-9802914 None:intergenic 65.0%
TGGGGGGAAGAGTGAGGTGG+CGG + chr1_2:9803022-9803041 Msa0055010:CDS 65.0%
! GAGGTGGCGGTGGATGGAGA+CGG + chr1_2:9803035-9803054 Msa0055010:CDS 65.0%
GATGGAGACGGAGGAGGAGC+TGG + chr1_2:9803047-9803066 Msa0055010:CDS 65.0%
CTGGCAGATGGGGAGGTGGA+AGG + chr1_2:9803079-9803098 Msa0055010:CDS 65.0%
GCAGATGGGGAGGTGGAAGG+CGG + chr1_2:9803082-9803101 Msa0055010:CDS 65.0%
CGCCGGTGGATCAGTTACCG+AGG + chr1_2:9803171-9803190 Msa0055010:CDS 65.0%
! GGGGAAGAGTGAGGTGGCGG+TGG + chr1_2:9803025-9803044 Msa0055010:CDS 70.0%
GTGGCGGTGGATGGAGACGG+AGG + chr1_2:9803038-9803057 Msa0055010:CDS 70.0%
GCGGTGGATGGAGACGGAGG+AGG + chr1_2:9803041-9803060 Msa0055010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9802075 9806512 9802075 ID=Msa0055010;Name=Msa0055010
chr1_2 mRNA 9802075 9806512 9802075 ID=Msa0055010-mRNA-1;Parent=Msa0055010;Name=Msa0055010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=498|1|1|1|1|1|5|833|437
chr1_2 exon 9802075 9803286 9802075 ID=Msa0055010-mRNA-1:exon:3659;Parent=Msa0055010-mRNA-1
chr1_2 exon 9804196 9804316 9804196 ID=Msa0055010-mRNA-1:exon:3660;Parent=Msa0055010-mRNA-1
chr1_2 exon 9804912 9805108 9804912 ID=Msa0055010-mRNA-1:exon:3661;Parent=Msa0055010-mRNA-1
chr1_2 exon 9805200 9805331 9805200 ID=Msa0055010-mRNA-1:exon:3662;Parent=Msa0055010-mRNA-1
chr1_2 exon 9805530 9806512 9805530 ID=Msa0055010-mRNA-1:exon:3663;Parent=Msa0055010-mRNA-1
chr1_2 five_prime_UTR 9802075 9802572 9802075 ID=Msa0055010-mRNA-1:five_prime_utr;Parent=Msa0055010-mRNA-1
chr1_2 CDS 9802573 9803286 9802573 ID=Msa0055010-mRNA-1:cds;Parent=Msa0055010-mRNA-1
chr1_2 CDS 9804196 9804316 9804196 ID=Msa0055010-mRNA-1:cds;Parent=Msa0055010-mRNA-1
chr1_2 CDS 9804912 9805108 9804912 ID=Msa0055010-mRNA-1:cds;Parent=Msa0055010-mRNA-1
chr1_2 CDS 9805200 9805331 9805200 ID=Msa0055010-mRNA-1:cds;Parent=Msa0055010-mRNA-1
chr1_2 CDS 9805530 9805679 9805530 ID=Msa0055010-mRNA-1:cds;Parent=Msa0055010-mRNA-1
chr1_2 three_prime_UTR 9805680 9806512 9805680 ID=Msa0055010-mRNA-1:three_prime_utr;Parent=Msa0055010-mRNA-1
Gene Sequence

>Msa0055010

ATGGCTTACCAAAACCAACATCTTTCACAAGAGTTGCCAATCCAACATTTCACAGACCAAACCAACAACAATAACAACAACTCATTTCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCCAATAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCTATCCTTCGTACCCACTACACCGACAACAACAACAACAACAATAACAACGACGTTACCAACAACGTTAACAGCGACACTGACGGTAACGGAGCTTCTAATTTTCTAAACCTTCAACAAACTTCCGACACCGTGCAAACCACCGGTCAATGGCTTGCACGGTCGATTCTCCACCGTCAACACGGTGAAGTAATCGACAACGTTACCATGGCCGGAGAAGTAGAGCACGAGTTAAGTAATATGAAGGATAACATCGACGGTGATGGACTTGGGGGGAAGAGTGAGGTGGCGGTGGATGGAGACGGAGGAGGAGCTGGATTGGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATAATGGCACATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACGCCGGTGGATCAGTTACCGAGGATTGATGCTCAGTTAGCACAGTCTCAGAATGTGGTGGCCAAATACTCTGCGTTTGGTGGTGGAGTAGATGACAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGCGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGCCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGACGATGAAGATGAACAGGTAGATAGTGACGCAAATCTGTTCGATGGTAGTTTTGATGGCGGTGCGGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCCCTAATGGAGCGTGTAAGACAAGAGCTTAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATCAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACCTCTACTGTCTTGAAGAGCAAACGCAAAAGGTCTCAAAACTAG
Protein sequence

>Msa0055010

MAYQNQHLSQELPIQHFTDQTNNNNNNSFRSILPDSPDPNSKPDSDPNNQLQTTPNWLNNAILRTHYTDNNNNNNNNDVTNNVNSDTDGNGASNFLNLQQTSDTVQTTGQWLARSILHRQHGEVIDNVTMAGEVEHELSNMKDNIDGDGLGGKSEVAVDGDGGGAGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGGGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN*