AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156150 MtrunA17_Chr1g0166711 91.400 593 15 2 1 557 1 593 0.0 1088
Msa0156150 MtrunA17_Chr1g0187241 74.530 585 109 5 1 546 1 584 0.0 895
Msa0156150 MtrunA17_Chr1g0166791 68.803 593 145 3 1 556 3 592 0.0 824
Msa0156150 MtrunA17_Chr1g0166731 83.974 468 39 1 112 543 9 476 0.0 772
Msa0156150 MtrunA17_Chr1g0166741 66.267 584 153 4 1 547 3 579 0.0 759
Msa0156150 MtrunA17_Chr1g0166771 65.568 546 144 3 39 547 5 543 0.0 698
Msa0156150 MtrunA17_Chr7g0261771 57.801 564 199 5 9 534 15 577 0.0 669
Msa0156150 MtrunA17_Chr7g0261881 55.692 571 212 5 2 534 6 573 0.0 669
Msa0156150 MtrunA17_Chr7g0261811 56.743 571 206 6 2 534 6 573 0.0 668
Msa0156150 MtrunA17_Chr7g0261791 54.770 566 216 5 2 528 6 570 0.0 635
Msa0156150 MtrunA17_Chr7g0261851 56.360 566 208 4 1 528 4 568 0.0 630
Msa0156150 MtrunA17_Chr3g0114501 46.897 580 264 6 9 548 6 581 1.01e-179 519
Msa0156150 MtrunA17_Chr7g0261661 52.784 485 186 7 113 556 1 483 1.35e-178 513
Msa0156150 MtrunA17_Chr7g0261751 51.020 490 165 6 8 423 14 502 3.20e-169 490
Msa0156150 MtrunA17_Chr8g0375311 41.506 571 285 5 1 525 12 579 2.48e-157 462
Msa0156150 MtrunA17_Chr3g0104011 42.160 574 281 9 1 531 1 566 2.92e-156 458
Msa0156150 MtrunA17_Chr8g0375291 40.642 561 285 5 2 520 20 574 1.21e-149 442
Msa0156150 MtrunA17_Chr7g0241741 40.214 562 298 6 10 534 7 567 2.98e-146 433
Msa0156150 MtrunA17_Chr8g0375351 38.462 559 299 4 9 525 24 579 2.25e-143 426
Msa0156150 MtrunA17_Chr8g0375321 38.339 566 304 4 2 525 14 576 7.49e-142 422
Msa0156150 MtrunA17_Chr4g0005901 39.821 560 291 6 10 528 17 571 1.51e-141 421
Msa0156150 MtrunA17_Chr8g0375341 38.462 559 299 4 9 525 24 579 1.35e-140 419
Msa0156150 MtrunA17_Chr8g0375331 39.405 538 281 4 8 503 7 541 3.86e-140 417
Msa0156150 MtrunA17_Chr8g0375361 38.959 557 295 4 11 525 25 578 8.18e-132 396
Msa0156150 MtrunA17_Chr3g0077151 38.657 551 299 8 3 528 7 543 4.91e-128 385
Msa0156150 MtrunA17_Chr7g0261731 54.762 336 114 4 9 307 15 349 2.37e-127 377
Msa0156150 MtrunA17_Chr7g0240381 37.565 575 296 10 9 536 13 571 1.88e-125 380
Msa0156150 MtrunA17_Chr4g0014871 36.949 544 307 10 13 528 18 553 6.75e-120 365
Msa0156150 MtrunA17_Chr4g0014791 37.590 556 284 9 13 528 17 549 4.11e-118 360
Msa0156150 MtrunA17_Chr3g0112611 36.473 584 314 12 13 548 20 594 1.86e-117 360
Msa0156150 MtrunA17_Chr5g0422881 37.071 553 303 7 19 528 14 564 5.34e-116 356
Msa0156150 MtrunA17_Chr3g0142101 35.336 566 308 11 1 525 15 563 5.68e-116 355
Msa0156150 MtrunA17_Chr4g0008651 35.765 562 309 10 9 528 18 569 8.92e-115 353
Msa0156150 MtrunA17_Chr4g0014841 37.912 546 300 9 11 528 15 549 1.38e-114 351
Msa0156150 MtrunA17_Chr5g0399071 35.274 584 322 8 11 543 7 585 2.26e-114 352
Msa0156150 MtrunA17_Chr4g0014781 37.316 544 304 10 13 528 17 551 2.44e-114 350
Msa0156150 MtrunA17_Chr3g0112671 35.484 558 302 8 13 529 21 561 9.77e-114 350
Msa0156150 MtrunA17_Chr5g0399061 35.192 574 317 8 17 544 19 583 1.34e-113 349
Msa0156150 MtrunA17_Chr3g0142091 35.965 570 315 9 2 531 3 562 3.85e-112 345
Msa0156150 MtrunA17_Chr4g0056431 35.664 572 313 9 17 541 17 580 2.71e-111 343
Msa0156150 MtrunA17_Chr4g0014801 36.949 544 306 10 13 528 17 551 2.13e-110 340
Msa0156150 MtrunA17_Chr7g0255621 34.261 575 324 10 25 550 20 589 7.26e-109 338
Msa0156150 MtrunA17_Chr5g0400371 32.542 590 343 9 9 553 96 675 1.43e-107 337
Msa0156150 MtrunA17_Chr4g0054891 32.692 572 330 8 2 525 84 648 6.58e-107 335
Msa0156150 MtrunA17_Chr7g0255611 33.748 563 321 9 12 528 18 574 3.21e-106 331
Msa0156150 MtrunA17_Chr4g0063591 34.938 561 309 7 10 525 7 556 9.38e-106 329
Msa0156150 MtrunA17_Chr7g0255601 33.503 588 331 14 16 552 18 596 1.49e-105 329
Msa0156150 MtrunA17_Chr7g0214461 32.496 557 328 7 25 541 79 627 2.72e-104 327
Msa0156150 MtrunA17_Chr7g0217461 32.902 541 313 7 11 504 10 547 2.62e-103 323
Msa0156150 MtrunA17_Chr5g0439381 34.932 584 309 10 12 543 15 579 8.79e-103 322
Msa0156150 MtrunA17_Chr1g0213711 32.389 565 330 9 25 549 21 573 4.63e-102 320
Msa0156150 MtrunA17_Chr5g0415791 34.155 568 325 9 25 545 29 594 5.53e-102 320
Msa0156150 MtrunA17_Chr7g0218851 31.986 569 338 6 18 544 39 600 2.53e-101 318
Msa0156150 MtrunA17_Chr8g0353031 36.431 538 311 7 26 533 19 555 4.88e-101 317
Msa0156150 MtrunA17_Chr2g0284701 32.517 572 332 9 13 530 19 590 2.10e-95 303
Msa0156150 MtrunA17_Chr7g0214731 32.743 565 329 10 16 530 51 614 3.99e-94 300
Msa0156150 MtrunA17_Chr8g0362711 31.866 568 327 8 14 529 13 572 2.51e-93 296
Msa0156150 MtrunA17_Chr3g0133341 32.264 561 329 8 21 537 10 563 5.08e-92 293
Msa0156150 MtrunA17_Chr2g0276751 32.632 570 326 9 3 532 16 567 6.29e-91 291
Msa0156150 MtrunA17_Chr4g0011041 30.609 575 337 10 2 525 15 578 3.85e-90 288
Msa0156150 MtrunA17_Chr5g0415961 31.716 577 334 10 7 530 5 574 1.92e-89 286
Msa0156150 MtrunA17_Chr4g0014861 38.950 362 209 5 171 528 75 428 5.06e-86 273
Msa0156150 MtrunA17_Chr4g0011471 30.741 540 314 7 36 525 27 556 2.39e-85 276
Msa0156150 MtrunA17_Chr8g0390331 29.514 576 346 9 24 552 14 576 6.89e-85 275
Msa0156150 MtrunA17_Chr7g0261721 60.500 200 79 0 332 531 5 204 1.13e-83 260
Msa0156150 MtrunA17_Chr4g0059991 31.327 565 334 9 31 544 28 589 5.71e-81 265
Msa0156150 MtrunA17_Chr4g0059971 31.330 549 322 10 31 528 40 584 2.29e-80 263
Msa0156150 MtrunA17_Chr6g0451841 30.435 552 313 14 32 534 12 541 4.99e-80 261
Msa0156150 MtrunA17_Chr1g0193391 29.545 572 344 12 13 540 3 559 6.08e-80 262
Msa0156150 MtrunA17_Chr8g0362781 29.381 565 341 10 18 529 23 582 7.19e-79 259
Msa0156150 MtrunA17_Chr1g0157601 30.443 542 325 10 29 525 19 553 1.37e-78 258
Msa0156150 MtrunA17_Chr4g0059981 29.431 615 350 11 6 548 2 604 1.43e-78 259
Msa0156150 MtrunA17_Chr4g0060001 30.492 610 356 14 1 550 1 602 9.98e-78 256
Msa0156150 MtrunA17_Chr7g0271221 30.053 569 352 10 12 544 4 562 2.85e-77 254
Msa0156150 MtrunA17_Chr3g0082631 37.887 388 216 6 160 528 78 459 3.68e-76 249
Msa0156150 MtrunA17_Chr1g0147631 30.309 551 323 10 25 525 25 564 2.40e-75 250
Msa0156150 MtrunA17_Chr8g0379971 30.435 598 343 14 1 530 1 593 6.85e-74 246
Msa0156150 MtrunA17_Chr8g0362801 31.838 468 268 9 113 532 1 465 1.44e-73 242
Msa0156150 MtrunA17_Chr7g0240271 28.061 588 368 8 8 546 7 588 2.11e-73 244
Msa0156150 MtrunA17_Chr2g0331511 29.636 577 332 17 36 555 32 591 6.24e-73 244
Msa0156150 MtrunA17_Chr2g0331461 29.758 578 333 15 36 556 36 597 1.67e-72 243
Msa0156150 MtrunA17_Chr2g0331521 27.920 548 342 9 25 525 22 563 8.15e-72 240
Msa0156150 MtrunA17_Chr1g0166721 84.615 130 15 1 1 130 1 125 2.05e-71 225
Msa0156150 MtrunA17_Chr2g0331471 30.459 545 310 14 36 525 99 629 9.51e-71 240
Msa0156150 MtrunA17_Chr2g0331481 29.725 545 314 13 36 525 36 566 3.92e-68 232
Msa0156150 MtrunA17_Chr1g0157621 29.875 559 338 14 46 557 1 552 1.12e-67 229
Msa0156150 MtrunA17_Chr1g0157611 29.264 557 341 12 24 534 15 564 1.85e-67 228
Msa0156150 MtrunA17_Chr8g0379991 30.053 569 311 16 46 530 1 566 4.34e-66 225
Msa0156150 MtrunA17_Chr4g0069581 29.291 536 337 8 42 542 3 531 6.28e-66 224
Msa0156150 MtrunA17_Chr2g0325951 27.046 562 348 10 13 528 2 547 1.06e-62 215
Msa0156150 MtrunA17_Chr7g0240281 29.220 551 337 9 25 526 24 570 3.21e-62 215
Msa0156150 MtrunA17_Chr4g0003761 27.417 569 357 12 21 542 27 586 4.10e-62 214
Msa0156150 MtrunA17_Chr3g0112631 37.801 291 167 6 264 547 3 286 1.51e-59 199
Msa0156150 MtrunA17_Chr2g0325961 27.208 566 343 11 13 528 2 548 2.72e-59 206
Msa0156150 MtrunA17_Chr7g0235521 30.131 458 262 9 113 518 1 452 5.84e-55 192
Msa0156150 MtrunA17_Chr7g0240131 30.349 458 261 10 113 518 1 452 2.64e-54 191
Msa0156150 MtrunA17_Chr1g0177591 26.619 556 351 14 8 525 28 564 2.69e-54 193
Msa0156150 MtrunA17_Chr2g0326211 26.502 566 346 10 13 528 2 547 4.31e-54 192
Msa0156150 MtrunA17_Chr3g0142121 37.879 264 152 5 265 525 11 265 7.64e-54 184
Msa0156150 MtrunA17_Chr7g0240211 29.913 458 263 9 113 518 1 452 2.35e-53 188
Msa0156150 MtrunA17_Chr7g0240181 29.913 458 263 9 113 518 1 452 2.60e-53 188
Msa0156150 MtrunA17_Chr7g0261831 57.419 155 63 3 219 371 1 154 2.73e-52 177
Msa0156150 MtrunA17_Chr4g0060071 33.113 302 193 4 234 529 1 299 3.09e-51 177
Msa0156150 MtrunA17_Chr3g0142111 33.444 302 159 5 8 271 29 326 5.91e-51 178
Msa0156150 MtrunA17_Chr5g0415841 29.459 370 244 5 170 528 96 459 1.77e-49 177
Msa0156150 MtrunA17_Chr7g0261671 69.903 103 31 0 9 111 16 118 2.69e-48 163
Msa0156150 MtrunA17_Chr7g0240151 28.821 458 250 10 113 518 1 434 1.20e-47 172
Msa0156150 MtrunA17_Chr1g0177611 29.412 374 238 8 163 525 77 435 7.71e-46 167
Msa0156150 MtrunA17_Chr7g0234381 29.306 447 252 7 112 525 3 418 3.38e-45 164
Msa0156150 MtrunA17_Chr7g0234151 29.754 447 250 8 112 525 3 418 7.93e-44 160
Msa0156150 MtrunA17_Chr1g0177631 28.800 375 239 8 163 525 77 435 2.72e-43 160
Msa0156150 MtrunA17_Chr7g0234181 31.880 367 225 5 160 525 71 413 6.73e-43 158
Msa0156150 MtrunA17_Chr4g0014851 45.455 110 60 0 13 122 18 127 1.07e-26 106
Msa0156150 MtrunA17_Chr7g0261821 56.716 67 29 0 466 532 1 67 6.39e-24 95.1
Msa0156150 MtrunA17_Chr3g0112661 43.434 99 56 0 13 111 19 117 3.53e-21 89.7
Msa0156150 MtrunA17_Chr1g0147591 35.526 152 84 3 160 303 53 198 2.01e-19 86.7
Msa0156150 MtrunA17_Chr2g0326221 26.471 238 145 4 292 528 15 223 2.76e-17 81.3
Msa0156150 MtrunA17_Chr4g0060051 38.889 108 63 1 1 108 1 105 1.26e-16 76.6
Msa0156150 MtrunA17_Chr3g0112651 27.895 190 94 4 112 265 21 203 2.21e-15 75.5
Msa0156150 MtrunA17_Chr3g0082621 45.070 71 39 0 41 111 2 72 1.53e-14 69.3
Msa0156150 MtrunA17_Chr8g0362791 38.554 83 51 0 31 113 42 124 4.14e-14 69.7
Msa0156150 MtrunA17_Chr8g0382601 33.721 86 56 1 172 256 1 86 1.23e-11 61.2
Msa0156150 MtrunA17_Chr1g0166761 68.421 38 11 1 1 38 3 39 1.74e-11 60.1
Msa0156150 MtrunA17_Chr4g0060061 34.454 119 61 3 108 222 23 128 5.78e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156150 AT5G46050.1 61.897 580 181 5 5 546 5 582 0.0 702
Msa0156150 AT5G46040.1 58.120 585 202 6 6 552 6 585 0.0 644
Msa0156150 AT5G46050.2 60.169 472 148 5 113 546 1 470 0.0 546
Msa0156150 AT2G40460.1 47.887 568 247 7 1 530 1 557 4.54e-180 520
Msa0156150 AT2G02040.1 41.043 575 290 6 1 529 12 583 9.20e-158 463
Msa0156150 AT3G54140.1 41.812 574 283 9 1 531 1 566 4.39e-153 451
Msa0156150 AT3G54140.2 41.812 574 283 9 1 531 1 566 4.39e-153 451
Msa0156150 AT5G01180.2 40.989 566 293 8 1 528 1 563 4.31e-148 438
Msa0156150 AT5G01180.3 40.989 566 293 8 1 528 1 563 4.31e-148 438
Msa0156150 AT5G01180.1 40.989 566 293 8 1 528 1 563 4.31e-148 438
Msa0156150 AT1G62200.1 38.420 557 293 4 7 521 32 580 3.08e-140 419
Msa0156150 AT1G62200.2 36.689 586 292 5 7 521 32 609 2.60e-134 404
Msa0156150 AT1G62200.3 36.689 586 292 5 7 521 46 623 4.02e-134 404
Msa0156150 AT2G02020.1 37.833 563 270 8 1 520 13 538 7.79e-130 390
Msa0156150 AT3G53960.1 38.045 573 299 11 13 540 23 584 9.21e-123 374
Msa0156150 AT3G54450.1 37.662 539 299 9 23 528 8 542 7.63e-120 365
Msa0156150 AT2G02020.2 35.524 563 262 9 1 520 13 517 2.67e-115 352
Msa0156150 AT2G37900.1 35.242 559 305 8 13 529 24 567 2.88e-114 351
Msa0156150 AT1G68570.1 36.738 558 303 10 17 528 15 568 2.18e-113 350
Msa0156150 AT1G68570.2 37.453 534 286 9 41 528 7 538 6.19e-113 347
Msa0156150 AT1G12110.1 34.483 580 322 10 17 548 17 586 3.33e-111 344
Msa0156150 AT1G22540.1 36.331 556 291 11 15 528 18 552 2.46e-110 340
Msa0156150 AT1G32450.1 33.667 600 335 11 9 549 19 614 6.30e-108 336
Msa0156150 AT2G26690.1 35.765 562 302 8 10 525 7 555 1.14e-107 334
Msa0156150 AT1G72140.1 33.275 574 308 10 2 529 9 553 1.22e-105 328
Msa0156150 AT1G22550.1 35.428 573 305 12 2 528 6 559 1.45e-100 315
Msa0156150 AT1G22570.1 36.972 568 304 10 2 528 6 560 2.46e-100 315
Msa0156150 AT2G26690.2 35.593 531 283 8 41 525 5 522 5.23e-100 313
Msa0156150 AT1G72120.1 36.036 555 306 10 9 528 12 552 8.34e-100 313
Msa0156150 AT1G72125.1 36.282 554 310 10 9 528 12 556 1.80e-99 312
Msa0156150 AT4G21680.1 32.212 565 331 6 11 527 12 572 1.20e-98 311
Msa0156150 AT5G19640.1 32.578 574 333 9 2 536 34 592 6.41e-98 310
Msa0156150 AT2G26690.3 35.441 522 278 8 50 525 2 510 3.64e-97 305
Msa0156150 AT2G37900.2 35.471 499 265 8 73 529 5 488 3.76e-97 304
Msa0156150 AT1G59740.1 32.870 575 336 8 9 541 23 589 6.45e-97 306
Msa0156150 AT1G72130.1 31.911 539 306 10 23 527 21 532 4.65e-96 303
Msa0156150 AT5G13400.1 33.451 568 331 8 16 536 52 619 3.08e-95 303
Msa0156150 AT3G21670.1 32.504 603 333 9 8 555 7 590 6.33e-93 296
Msa0156150 AT1G69870.1 32.124 579 337 10 24 556 48 616 1.07e-92 296
Msa0156150 AT1G22570.2 37.240 529 279 9 41 528 7 523 4.28e-92 292
Msa0156150 AT1G69850.1 30.862 580 338 8 13 534 11 585 5.44e-89 286
Msa0156150 AT1G33440.1 32.796 558 324 10 9 525 20 567 2.63e-88 285
Msa0156150 AT1G27040.1 31.341 552 338 7 13 527 13 560 1.41e-85 276
Msa0156150 AT1G27040.2 31.341 552 338 7 13 527 9 556 1.63e-85 276
Msa0156150 AT3G16180.1 31.004 558 324 11 21 525 16 565 3.22e-85 276
Msa0156150 AT1G27040.3 31.450 531 323 7 34 527 2 528 9.21e-82 265
Msa0156150 AT1G52190.1 29.520 542 325 10 36 525 30 566 6.47e-81 265
Msa0156150 AT1G18880.1 30.728 563 333 9 31 540 23 581 8.30e-79 259
Msa0156150 AT1G27080.1 30.915 579 333 13 25 556 12 570 1.19e-75 251
Msa0156150 AT5G62730.1 29.485 563 357 8 1 530 32 587 3.75e-75 249
Msa0156150 AT5G14940.1 28.288 555 339 10 25 533 5 546 7.23e-75 248
Msa0156150 AT3G47960.1 30.156 577 339 11 31 548 65 636 8.84e-71 239
Msa0156150 AT5G62680.1 29.946 551 332 9 31 530 47 594 1.13e-70 238
Msa0156150 AT3G25260.1 30.515 544 304 14 17 525 11 515 2.29e-70 235
Msa0156150 AT5G62730.2 29.567 531 336 7 33 530 3 528 4.81e-70 234
Msa0156150 AT3G01350.1 28.169 568 336 12 24 533 3 556 5.17e-70 235
Msa0156150 AT1G72130.2 31.818 396 228 8 149 527 44 414 3.15e-69 229
Msa0156150 AT1G72130.3 31.818 396 228 8 149 527 44 414 3.15e-69 229
Msa0156150 AT1G27080.2 30.839 548 312 13 56 556 1 528 2.63e-67 227
Msa0156150 AT3G45710.1 29.159 559 334 12 27 543 21 559 3.22e-67 228
Msa0156150 AT3G45700.1 28.829 555 335 13 26 544 15 545 8.90e-67 226
Msa0156150 AT3G45650.1 28.049 574 355 9 6 540 1 555 9.57e-67 226
Msa0156150 AT3G45680.1 29.558 565 333 14 6 528 1 542 3.16e-66 225
Msa0156150 AT5G28470.2 28.571 560 324 14 23 525 13 553 1.63e-65 223
Msa0156150 AT3G45720.1 30.624 529 301 15 49 534 41 546 2.04e-65 223
Msa0156150 AT1G69860.1 31.308 543 313 11 31 528 22 549 2.17e-65 223
Msa0156150 AT3G25280.1 29.304 546 314 10 17 525 11 521 5.14e-64 218
Msa0156150 AT3G45660.1 29.254 523 310 11 46 528 40 542 2.23e-63 218
Msa0156150 AT3G45660.3 29.254 523 310 11 46 528 40 542 2.23e-63 218
Msa0156150 AT3G45660.2 29.254 523 310 11 46 528 61 563 5.29e-63 217
Msa0156150 AT5G28470.1 28.393 560 323 15 23 525 13 551 8.22e-63 216
Msa0156150 AT3G45650.2 26.833 600 355 10 6 540 1 581 1.62e-61 213
Msa0156150 AT3G45690.1 27.747 537 300 13 26 528 17 499 2.84e-54 192
Msa0156150 AT5G11570.1 26.886 517 332 12 13 525 2 476 7.88e-44 162
Msa0156150 AT2G38100.2 24.405 504 327 13 55 525 2 484 7.25e-32 129
Msa0156150 AT2G38100.1 24.405 504 327 13 55 525 18 500 9.48e-32 129
Msa0156150 AT2G38100.3 24.405 504 327 13 55 525 24 506 1.48e-31 129

Find 119 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAGCTCTTCATGCTTTC+TGG 0.052596 1_4:-21822536 None:intergenic
TCAAGTTCATATAGTTCTTT+AGG 0.172531 1_4:-21820703 None:intergenic
ACTCCAAGAGATTAGTTTAT+TGG 0.175091 1_4:+21822851 Msa0156150:exon
ACGCCTACCTTGGCCGTTAT+TGG 0.203711 1_4:+21819710 Msa0156150:CDS
TTTGAGAGAATGGCTTATTA+TGG 0.210968 1_4:+21819559 Msa0156150:CDS
GATGGAACTGTTGATCTTAA+AGG 0.218915 1_4:+21817293 Msa0156150:CDS
ATTTGGATCACTCCAATATT+AGG 0.239092 1_4:+21819673 Msa0156150:CDS
GTCTCCTCTACATGTGTAAC+TGG 0.243014 1_4:-21822041 None:intergenic
TTCAACTACTCCATGTTCTT+TGG 0.279867 1_4:-21822399 None:intergenic
CATAATTCATATAGTGATTA+TGG 0.284425 1_4:+21822337 Msa0156150:CDS
AGAACTATATGAACTTGATT+TGG 0.287269 1_4:+21820708 Msa0156150:CDS
GATCATTCTTATCATTTGTT+TGG 0.294014 1_4:-21822063 None:intergenic
GAACATGGAGTAGTTGAAAA+TGG 0.302397 1_4:+21822404 Msa0156150:CDS
GAGATTAGTTTATTGGTTCT+TGG 0.309855 1_4:+21822858 Msa0156150:exon
AGCTTTCCAACAACCGGTTT+TGG 0.310932 1_4:-21817333 None:intergenic
CTAAAACAGAATTTGCAAAA+AGG 0.325782 1_4:-21820486 None:intergenic
GGATGTTCAGCATCTTTATT+GGG 0.330214 1_4:+21820461 Msa0156150:intron
AAAATTCCACCAGCAAGTTT+AGG 0.331725 1_4:+21822188 Msa0156150:CDS
AGGGAGTCCCTTCACTAAAA+TGG 0.333057 1_4:+21820627 Msa0156150:CDS
CCAATTGGGTTGGTACCATT+TGG 0.335195 1_4:+21819656 Msa0156150:CDS
TGGATGTTCAGCATCTTTAT+TGG 0.338681 1_4:+21820460 Msa0156150:intron
CAAGTTCATATAGTTCTTTA+GGG 0.338874 1_4:-21820702 None:intergenic
TGCTTCCTTTATCTACCTAT+TGG 0.339032 1_4:+21819744 Msa0156150:CDS
GCAACATAAGCACCTAATAT+TGG 0.342872 1_4:-21819685 None:intergenic
CAACTTTCACTGAAAGATAT+AGG 0.345759 1_4:+21822366 Msa0156150:CDS
TTGAGAGAATGGCTTATTAT+GGG 0.354991 1_4:+21819560 Msa0156150:CDS
CTTCTACCAATGTCACCAAT+TGG 0.359761 1_4:+21819641 Msa0156150:CDS
AAAGCTTGTTCCTTCTTTGT+TGG 0.383274 1_4:+21817350 Msa0156150:CDS
GGTTATGCACTTCCAACTCT+TGG 0.392524 1_4:+21820541 Msa0156150:CDS
GATAATGTGGGTTGGACTCT+TGG 0.393984 1_4:+21820520 Msa0156150:CDS
TCTTTAGGGTCACTAGGAAT+AGG 0.396153 1_4:-21820688 None:intergenic
ACATACCAATAGGTAGATAA+AGG 0.397338 1_4:-21819749 None:intergenic
ATTAATGTAGTAGCCATGAT+TGG 0.405581 1_4:-21822086 None:intergenic
AGATTAGTTTATTGGTTCTT+GGG 0.414050 1_4:+21822859 Msa0156150:exon
ATGGAACTGTTGATCTTAAA+GGG 0.414186 1_4:+21817294 Msa0156150:CDS
TTCCTATGCCCATCCTTTGA+AGG 0.429082 1_4:-21822313 None:intergenic
ATTTGAGCAATCATTGTACT+AGG 0.430351 1_4:-21822110 None:intergenic
TCAAATCCAAAACCGGTTGT+TGG 0.432819 1_4:+21817327 Msa0156150:CDS
GGAACAAGCTTTCCAACAAC+CGG 0.435837 1_4:-21817339 None:intergenic
GAACCAATAAACTAATCTCT+TGG 0.436276 1_4:-21822854 None:intergenic
TTACAGCTAGTAGTGTTCTA+TGG 0.437692 1_4:+21820315 Msa0156150:CDS
TTCTACCAATGTCACCAATT+GGG 0.441799 1_4:+21819642 Msa0156150:CDS
GTATGAGGTATTTGAGAGAA+TGG 0.453573 1_4:+21819549 Msa0156150:CDS
ACCACCTGAGTGTCATGAAA+TGG 0.453752 1_4:+21820263 Msa0156150:CDS
TCCAGAAAGCATGAAGAGCT+TGG 0.454099 1_4:+21822535 Msa0156150:CDS
TTGTGGCTGCTATGAAGAAA+TGG 0.454963 1_4:+21820659 Msa0156150:CDS
CCAAATGGTACCAACCCAAT+TGG 0.470302 1_4:-21819656 None:intergenic
CCTATTCTCAAATCCAAAAC+CGG 0.472178 1_4:+21817320 Msa0156150:CDS
AGTGCTTGCAGAAGAATTGA+AGG 0.472723 1_4:+21822799 Msa0156150:CDS
TGAAGGAGAGTAATTCCTCT+AGG 0.480380 1_4:-21822296 None:intergenic
TACACTCTAGCAGTAGGAAC+AGG 0.482514 1_4:+21820343 Msa0156150:CDS
TATAGACATAAAGTACCTAC+AGG 0.484411 1_4:+21820607 Msa0156150:CDS
CCAGAAAGCATGAAGAGCTT+GGG 0.487543 1_4:+21822536 Msa0156150:CDS
TCAATGACTAGCTTAGGCAT+TGG 0.491759 1_4:+21822569 Msa0156150:CDS
TATGTTGCTGACGCCTACCT+TGG 0.492497 1_4:+21819700 Msa0156150:CDS
TTGGAAGAGTATGCAAAGAA+AGG 0.494172 1_4:+21820727 Msa0156150:CDS
ACAAATGTACCTAAACTTGC+TGG 0.498006 1_4:-21822197 None:intergenic
ACAACACTTGATAGAGGCAT+TGG 0.500358 1_4:+21822158 Msa0156150:CDS
GATAAGAATGATCCCAATCA+TGG 0.502771 1_4:+21822073 Msa0156150:CDS
AGTCTATATACAAGATAATG+TGG 0.504069 1_4:+21820507 Msa0156150:CDS
CTGAGGAACATGGTCACAAA+GGG 0.505036 1_4:+21822636 Msa0156150:CDS
AGTAAAATGAATATGCTCAA+TGG 0.506359 1_4:-21822437 None:intergenic
TTGTAAAGATTATGCAGAGA+TGG 0.513097 1_4:+21822264 Msa0156150:CDS
GGTTAACATGGAAGAGGGAA+GGG 0.517761 1_4:+21817250 Msa0156150:exon
GAAGGAGAGTAATTCCTCTA+GGG 0.517835 1_4:-21822295 None:intergenic
TATAGTTCTTTAGGGTCACT+AGG 0.526463 1_4:-21820694 None:intergenic
TCTTATTCAATGACTAGCTT+AGG 0.530851 1_4:+21822563 Msa0156150:CDS
CTTATACCTCAATGTGGGAG+TGG 0.531336 1_4:-21820767 None:intergenic
AATTACTCTCCTTCAAAGGA+TGG 0.536918 1_4:+21822304 Msa0156150:CDS
TCCCTTCACTAAAATGGCTA+AGG 0.542023 1_4:+21820633 Msa0156150:CDS
TTAATGTAGTAGCCATGATT+GGG 0.543126 1_4:-21822085 None:intergenic
CTTAGTGTAGCCAAAGAACA+TGG 0.548011 1_4:+21822389 Msa0156150:CDS
GGTACTTTATGTCTATAGAA+TGG 0.550764 1_4:-21820601 None:intergenic
CAACACTTGATAGAGGCATT+GGG 0.555650 1_4:+21822159 Msa0156150:CDS
TTGATTCCACTCCCACATTG+AGG 0.555903 1_4:+21820761 Msa0156150:CDS
TTAATAAAGAAGCTTCATCA+AGG 0.556770 1_4:+21819607 Msa0156150:CDS
GTGAGTGAGTTCACACAAGA+TGG 0.557751 1_4:+21817275 Msa0156150:CDS
GATATTGCAAGTCCAAGAGT+TGG 0.562877 1_4:-21820553 None:intergenic
AAGACTAATTCAAGTACTAG+TGG 0.564192 1_4:+21822005 Msa0156150:CDS
ACTAATCTCTTGGAGTCACT+TGG 0.564581 1_4:-21822844 None:intergenic
AGGTTAACATGGAAGAGGGA+AGG 0.565286 1_4:+21817249 Msa0156150:exon
ACCAATGTCACCAATTGGGT+TGG 0.565849 1_4:+21819646 Msa0156150:CDS
AAATGGCATACCAACAAAGA+AGG 0.567725 1_4:-21817360 None:intergenic
TCTTGACACATGCCTTGTTG+AGG 0.569147 1_4:-21821986 None:intergenic
ACCAACCCAATTGGTGACAT+TGG 0.570728 1_4:-21819647 None:intergenic
CTCCTTCAAAGGATGGGCAT+AGG 0.570734 1_4:+21822311 Msa0156150:CDS
TAATATTGGAGTGATCCAAA+TGG 0.571433 1_4:-21819671 None:intergenic
CAGTAACAAAGGTCCAATAA+CGG 0.571576 1_4:-21819723 None:intergenic
GAGGAATTACTCTCCTTCAA+AGG 0.576375 1_4:+21822300 Msa0156150:CDS
AATGTACCTAAACTTGCTGG+TGG 0.578804 1_4:-21822194 None:intergenic
ATATACAAGATAATGTGGGT+TGG 0.583558 1_4:+21820512 Msa0156150:CDS
AGGAACATGGTCACAAAGGG+TGG 0.587585 1_4:+21822639 Msa0156150:CDS
TCTCCTCTACATGTGTAACT+GGG 0.590294 1_4:-21822040 None:intergenic
ATTACTCTCCTTCAAAGGAT+GGG 0.590754 1_4:+21822305 Msa0156150:CDS
TTCAGAACAAAACTCAGACA+TGG 0.594960 1_4:+21822922 Msa0156150:three_prime_UTR
CAAGGAACAACACTTGATAG+AGG 0.596087 1_4:+21822152 Msa0156150:CDS
GTCTATATACAAGATAATGT+GGG 0.599062 1_4:+21820508 Msa0156150:CDS
AATACACTATTTGTGAAGCA+AGG 0.599414 1_4:+21822134 Msa0156150:CDS
GGTCCAATAACGGCCAAGGT+AGG 0.599634 1_4:-21819713 None:intergenic
AATGGATGTTACAAAATGCA+AGG 0.601334 1_4:+21820281 Msa0156150:CDS
CAAAGGTCCAATAACGGCCA+AGG 0.604327 1_4:-21819717 None:intergenic
GATAAAGGAAGCAGTAACAA+AGG 0.605026 1_4:-21819734 None:intergenic
CATGGAGTAGTTGAAAATGG+AGG 0.610149 1_4:+21822407 Msa0156150:CDS
TAAAATGGCTAAGGTCATTG+TGG 0.611474 1_4:+21820642 Msa0156150:CDS
GTGCTCTACACTCTAGCAGT+AGG 0.615235 1_4:+21820337 Msa0156150:CDS
TCCATTTCATGACACTCAGG+TGG 0.620788 1_4:-21820264 None:intergenic
AATCAAGATGAGAAGCATTG+AGG 0.621145 1_4:-21822673 None:intergenic
GAACACTACTAGCTGTAATG+TGG 0.621214 1_4:-21820310 None:intergenic
ACTGAGGAACATGGTCACAA+AGG 0.621642 1_4:+21822635 Msa0156150:CDS
ATGCCCAGTTACACATGTAG+AGG 0.628339 1_4:+21822037 Msa0156150:CDS
TCACACATCACTGAGGAACA+TGG 0.632557 1_4:+21822626 Msa0156150:CDS
ACATCCATTTCATGACACTC+AGG 0.634209 1_4:-21820267 None:intergenic
TTAGTGAAGGGACTCCCTGT+AGG 0.634253 1_4:-21820622 None:intergenic
TGGAACTTATACCTCAATGT+GGG 0.647517 1_4:-21820772 None:intergenic
ATGGAACTTATACCTCAATG+TGG 0.655784 1_4:-21820773 None:intergenic
ACTAATTCAAGTACTAGTGG+AGG 0.670493 1_4:+21822008 Msa0156150:CDS
TGTATGCAGATTCCTCAACA+AGG 0.703011 1_4:+21821974 Msa0156150:intron
ATAGACATAAAGTACCTACA+GGG 0.722644 1_4:+21820608 Msa0156150:CDS
AACAGTTTCACACATCACTG+AGG 0.750967 1_4:+21822619 Msa0156150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATGTTGTTAAAAA+TGG + chr1_4:21817423-21817442 Msa0156150:intron 10.0%
!! AAAAAAAAATCAATAATTGT+TGG - chr1_4:21819097-21819116 None:intergenic 10.0%
!! AAAATGATTAATTAAGTAAA+TGG - chr1_4:21820141-21820160 None:intergenic 10.0%
!!! AATATCTATCATAATATTTT+TGG + chr1_4:21820570-21820589 Msa0156150:CDS 10.0%
!! ATGTATTTATGAAAAAAAAT+AGG - chr1_4:21820812-21820831 None:intergenic 10.0%
!!! TGAAAATGAAATTTTAATAT+TGG + chr1_4:21821433-21821452 Msa0156150:intron 10.0%
!!! TATTACTTATTTTTTAATTG+TGG + chr1_4:21821720-21821739 Msa0156150:intron 10.0%
!!! TTTTTGTTTTTTTGATAGTA+TGG - chr1_4:21817698-21817717 None:intergenic 15.0%
!! TAAAAAGAACATTTATAATG+AGG + chr1_4:21818026-21818045 Msa0156150:intron 15.0%
!! AAAAAGAACATTTATAATGA+GGG + chr1_4:21818027-21818046 Msa0156150:intron 15.0%
!!! ATAAAAGCTTTTCATATTAA+AGG + chr1_4:21818113-21818132 Msa0156150:intron 15.0%
!! TATTATTATAGTGGTATATT+AGG - chr1_4:21818362-21818381 None:intergenic 15.0%
!! TTAAGGAATTATTATTATAG+TGG - chr1_4:21818371-21818390 None:intergenic 15.0%
!!! TCTTGTATTTTTTTTTTGAA+AGG + chr1_4:21818502-21818521 Msa0156150:intron 15.0%
!!! TTAGTTTTTTTTTAATGAAG+AGG + chr1_4:21818602-21818621 Msa0156150:intron 15.0%
!!! CACTTATTTTAATTTTAAGT+AGG - chr1_4:21818913-21818932 None:intergenic 15.0%
!! ATTTACAAAAAAAGAATAAC+TGG - chr1_4:21819133-21819152 None:intergenic 15.0%
!! TCAGTATTATAAGTATATTT+AGG + chr1_4:21819272-21819291 Msa0156150:intron 15.0%
!!! GTATGATTTTATTTTTTAGA+GGG - chr1_4:21819865-21819884 None:intergenic 15.0%
!!! AGTATGATTTTATTTTTTAG+AGG - chr1_4:21819866-21819885 None:intergenic 15.0%
!!! AATACATATGGAAAATTTTA+CGG - chr1_4:21819958-21819977 None:intergenic 15.0%
!!! CCTATAAATATTTAGAATTT+TGG - chr1_4:21820117-21820136 None:intergenic 15.0%
!! CCAAAATTCTAAATATTTAT+AGG + chr1_4:21820114-21820133 Msa0156150:intron 15.0%
!!! TTATTATTTTTCTTAAGTTG+CGG - chr1_4:21821182-21821201 None:intergenic 15.0%
!! AAATACTCATAAAAACTTAA+TGG + chr1_4:21821227-21821246 Msa0156150:intron 15.0%
!! CAACTAATTAATATCATTGA+CGG - chr1_4:21817474-21817493 None:intergenic 20.0%
!! AAAATTGTTAAAAATGTACG+TGG + chr1_4:21817556-21817575 Msa0156150:intron 20.0%
!!! TACTAATGAAAACCAATTTT+TGG - chr1_4:21817664-21817683 None:intergenic 20.0%
!! AAATTGTAAATGATACACAT+GGG - chr1_4:21817790-21817809 None:intergenic 20.0%
!! AAAATTGTAAATGATACACA+TGG - chr1_4:21817791-21817810 None:intergenic 20.0%
!!! TACAATTTTAAGAAAGTCAT+TGG + chr1_4:21817802-21817821 Msa0156150:intron 20.0%
!! TAAATAAGTGTGTATATTTG+TGG + chr1_4:21817920-21817939 Msa0156150:intron 20.0%
!! TTTATAAATTCCTCACTTTA+GGG - chr1_4:21817981-21818000 None:intergenic 20.0%
!! ATTTATAAATTCCTCACTTT+AGG - chr1_4:21817982-21818001 None:intergenic 20.0%
!! TAAAAATAATGTCACTATTG+TGG - chr1_4:21818680-21818699 None:intergenic 20.0%
!! GAGAAATTTGAGTATTTAAT+GGG - chr1_4:21818945-21818964 None:intergenic 20.0%
!!! AAAAAGAATAACTGGATTTT+GGG - chr1_4:21819125-21819144 None:intergenic 20.0%
!!! AAAAAAGAATAACTGGATTT+TGG - chr1_4:21819126-21819145 None:intergenic 20.0%
!! ATGTATGTAGATTCAATAAT+TGG - chr1_4:21819163-21819182 None:intergenic 20.0%
!! AATATAACAAGTTGTGAAAA+AGG + chr1_4:21819451-21819470 Msa0156150:intron 20.0%
!! CAAAAATCATTAAGTGTTAT+TGG + chr1_4:21819477-21819496 Msa0156150:intron 20.0%
!! ATAAATTAAGACATACCAAT+AGG - chr1_4:21819762-21819781 None:intergenic 20.0%
!! TTTATTATCTAGTGTGAAAT+AGG + chr1_4:21819777-21819796 Msa0156150:intron 20.0%
!! TTATTATCTAGTGTGAAATA+GGG + chr1_4:21819778-21819797 Msa0156150:intron 20.0%
!!! TTTGACAGAAAATTTTTACA+GGG - chr1_4:21820018-21820037 None:intergenic 20.0%
!!! TTTTGACAGAAAATTTTTAC+AGG - chr1_4:21820019-21820038 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+AGG + chr1_4:21820084-21820103 Msa0156150:intron 20.0%
!!! ATATAACCCTATTTTATTGT+TGG + chr1_4:21820163-21820182 Msa0156150:intron 20.0%
!! TAAAACAGAATTTGCAAAAA+GGG - chr1_4:21820488-21820507 None:intergenic 20.0%
!! AATAGGTATTAAATCAAACA+TGG - chr1_4:21820795-21820814 None:intergenic 20.0%
!! CATAGACTGTATTAAAAATA+TGG - chr1_4:21821405-21821424 None:intergenic 20.0%
!!! AATGCCTCAATTTTTTTTTT+TGG + chr1_4:21821805-21821824 Msa0156150:intron 20.0%
!! TATAAGTTTAGGAAAATTTG+AGG - chr1_4:21821912-21821931 None:intergenic 20.0%
!! AACAATGATAGTATAAGTTT+AGG - chr1_4:21821923-21821942 None:intergenic 20.0%
!! CATAATTCATATAGTGATTA+TGG + chr1_4:21822337-21822356 Msa0156150:CDS 20.0%
!!! TTTGTTCTGAAAAATACATT+TGG - chr1_4:21822913-21822932 None:intergenic 20.0%
!!! TGATTTTTTTCCCCTAAAAA+AGG + chr1_4:21817229-21817248 Msa0156150:five_prime_UTR 25.0%
!!! TTCCATGTTAACCTTTTTTA+GGG - chr1_4:21817243-21817262 None:intergenic 25.0%
!! TGAAAACTCAAGTTCAATTT+TGG - chr1_4:21817521-21817540 None:intergenic 25.0%
! TCAATGAAAATGCCAAAAAT+TGG + chr1_4:21817649-21817668 Msa0156150:intron 25.0%
! TAACAACTAGTGAAGTAATT+AGG + chr1_4:21817882-21817901 Msa0156150:intron 25.0%
! ATAGATGAGTAAATTCTTGA+TGG + chr1_4:21818278-21818297 Msa0156150:intron 25.0%
! GTATATTAGGAATTCTTTCT+TGG - chr1_4:21818349-21818368 None:intergenic 25.0%
!! TGTGATACTTTTCTTTTGAA+AGG - chr1_4:21818577-21818596 None:intergenic 25.0%
!!! TTTCAAAAGAAAAGTATCAC+AGG + chr1_4:21818576-21818595 Msa0156150:intron 25.0%
!!! TTCAAAAGAAAAGTATCACA+GGG + chr1_4:21818577-21818596 Msa0156150:intron 25.0%
! GGAGAAATTTGAGTATTTAA+TGG - chr1_4:21818946-21818965 None:intergenic 25.0%
! ACCAACTATCAAATCTTAAA+TGG + chr1_4:21818988-21819007 Msa0156150:intron 25.0%
!! ACCATTTAAGATTTGATAGT+TGG - chr1_4:21818992-21819011 None:intergenic 25.0%
! ACGATAAAAATGAATCAACA+TGG - chr1_4:21819371-21819390 None:intergenic 25.0%
! TGATGTCACATCATTAAAAA+TGG + chr1_4:21819417-21819436 Msa0156150:intron 25.0%
!! TGACAATGAAATGTGTATTT+TGG + chr1_4:21819520-21819539 Msa0156150:intron 25.0%
! TTAATAAAGAAGCTTCATCA+AGG + chr1_4:21819607-21819626 Msa0156150:CDS 25.0%
!! TACATACGGAAAATTTTACA+AGG - chr1_4:21819927-21819946 None:intergenic 25.0%
!! TTACGGACTAAAAATACATA+CGG - chr1_4:21819941-21819960 None:intergenic 25.0%
! ACAAGGACTAAAAATACATA+TGG - chr1_4:21819970-21819989 None:intergenic 25.0%
!! TGTTGAAGGAAAATTTTACA+AGG - chr1_4:21819987-21820006 None:intergenic 25.0%
!! CATTTTCCTTTAGCATTTTA+GGG - chr1_4:21820050-21820069 None:intergenic 25.0%
!! ACATTTTCCTTTAGCATTTT+AGG - chr1_4:21820051-21820070 None:intergenic 25.0%
! ATTGGTCCAACAATAAAATA+GGG - chr1_4:21820172-21820191 None:intergenic 25.0%
! ATAAACTCTCATTCTTCAAT+TGG + chr1_4:21820437-21820456 Msa0156150:intron 25.0%
! CTAAAACAGAATTTGCAAAA+AGG - chr1_4:21820489-21820508 None:intergenic 25.0%
! AGTCTATATACAAGATAATG+TGG + chr1_4:21820507-21820526 Msa0156150:CDS 25.0%
! GTCTATATACAAGATAATGT+GGG + chr1_4:21820508-21820527 Msa0156150:CDS 25.0%
!!! TCTATCATAATATTTTTGGC+AGG + chr1_4:21820574-21820593 Msa0156150:CDS 25.0%
! CAAGTTCATATAGTTCTTTA+GGG - chr1_4:21820705-21820724 None:intergenic 25.0%
! TCAAGTTCATATAGTTCTTT+AGG - chr1_4:21820706-21820725 None:intergenic 25.0%
! AGAACTATATGAACTTGATT+TGG + chr1_4:21820708-21820727 Msa0156150:CDS 25.0%
! ATTCGACTAAGTTTCAATTA+AGG + chr1_4:21820857-21820876 Msa0156150:intron 25.0%
! AAAAGAAAATGCATGTCATT+CGG + chr1_4:21821004-21821023 Msa0156150:intron 25.0%
!!! AAACCAAATGAGATTTTTTG+CGG - chr1_4:21821085-21821104 None:intergenic 25.0%
! TTTAATACAGTCTATGTTGT+TGG + chr1_4:21821409-21821428 Msa0156150:intron 25.0%
! TTAATACAGTCTATGTTGTT+GGG + chr1_4:21821410-21821429 Msa0156150:intron 25.0%
!! ATAGATGTTATGTTGGTAAA+TGG + chr1_4:21821781-21821800 Msa0156150:intron 25.0%
! ACCACCAAAAAAAAAAATTG+AGG - chr1_4:21821812-21821831 None:intergenic 25.0%
! GATCATTCTTATCATTTGTT+TGG - chr1_4:21822066-21822085 None:intergenic 25.0%
! AGTAAAATGAATATGCTCAA+TGG - chr1_4:21822440-21822459 None:intergenic 25.0%
! TTCCCATAAGTAAAAATTGA+GGG - chr1_4:21822463-21822482 None:intergenic 25.0%
!! TGATTACTACTATGCATTTT+TGG + chr1_4:21822691-21822710 Msa0156150:CDS 25.0%
!!! AGATTAGTTTATTGGTTCTT+GGG + chr1_4:21822859-21822878 Msa0156150:exon 25.0%
!!! TCCATGTTAACCTTTTTTAG+GGG - chr1_4:21817242-21817261 None:intergenic 30.0%
!!! CTTCCATGTTAACCTTTTTT+AGG - chr1_4:21817244-21817263 None:intergenic 30.0%
AAAAAAGGTTAACATGGAAG+AGG + chr1_4:21817244-21817263 Msa0156150:exon 30.0%
AAAAAGGTTAACATGGAAGA+GGG + chr1_4:21817245-21817264 Msa0156150:exon 30.0%
ATGGAACTGTTGATCTTAAA+GGG + chr1_4:21817294-21817313 Msa0156150:CDS 30.0%
TTGTTAAAAATGTACGTGGA+AGG + chr1_4:21817560-21817579 Msa0156150:intron 30.0%
ATAATGTATCTTGCAAACTG+TGG - chr1_4:21817761-21817780 None:intergenic 30.0%
TAAGTATATACCCTAAAGTG+AGG + chr1_4:21817968-21817987 Msa0156150:intron 30.0%
AAGAACATTTATAATGAGGG+AGG + chr1_4:21818030-21818049 Msa0156150:intron 30.0%
AGAACATTTATAATGAGGGA+GGG + chr1_4:21818031-21818050 Msa0156150:intron 30.0%
AGCATAGCAAGAATACATTA+AGG + chr1_4:21818165-21818184 Msa0156150:intron 30.0%
GTATGTATAATGAGATATCC+AGG - chr1_4:21818192-21818211 None:intergenic 30.0%
TCATCTATTAATTTCGAACG+AGG - chr1_4:21818266-21818285 None:intergenic 30.0%
ATTCCTTAATCTTGTTCATC+TGG + chr1_4:21818382-21818401 Msa0156150:intron 30.0%
!!! TTTTTTAATGAAGAGGTCCA+TGG + chr1_4:21818609-21818628 Msa0156150:intron 30.0%
!!! CATGCTATTGTTTGGTTTTT+TGG - chr1_4:21818650-21818669 None:intergenic 30.0%
! GATGTTTTCATGCTATTGTT+TGG - chr1_4:21818658-21818677 None:intergenic 30.0%
TCTCACACAAAGTTCTTAAA+CGG + chr1_4:21818815-21818834 Msa0156150:intron 30.0%
TTTGAGTATTTAATGGGACA+AGG - chr1_4:21818939-21818958 None:intergenic 30.0%
! CCTATATGGTACTTTTATTC+GGG - chr1_4:21818967-21818986 None:intergenic 30.0%
! CCCTATATGGTACTTTTATT+CGG - chr1_4:21818968-21818987 None:intergenic 30.0%
!! CCGAATAAAAGTACCATATA+GGG + chr1_4:21818965-21818984 Msa0156150:intron 30.0%
!! ACAAAATCTAAGACGACTTT+TGG - chr1_4:21819341-21819360 None:intergenic 30.0%
TGTCACATCATTAAAAATGG+AGG + chr1_4:21819420-21819439 Msa0156150:intron 30.0%
TTTGAGAGAATGGCTTATTA+TGG + chr1_4:21819559-21819578 Msa0156150:CDS 30.0%
TTGAGAGAATGGCTTATTAT+GGG + chr1_4:21819560-21819579 Msa0156150:CDS 30.0%
TAATATTGGAGTGATCCAAA+TGG - chr1_4:21819674-21819693 None:intergenic 30.0%
ATTTGGATCACTCCAATATT+AGG + chr1_4:21819673-21819692 Msa0156150:CDS 30.0%
ACATACCAATAGGTAGATAA+AGG - chr1_4:21819752-21819771 None:intergenic 30.0%
ACAGGGATTAAAAATGTTGA+AGG - chr1_4:21820001-21820020 None:intergenic 30.0%
! TTTTGTCCCTAAAATGCTAA+AGG + chr1_4:21820041-21820060 Msa0156150:intron 30.0%
TGCTAAAGGAAAATGTTACA+TGG + chr1_4:21820055-21820074 Msa0156150:intron 30.0%
CATTGGTCCAACAATAAAAT+AGG - chr1_4:21820173-21820192 None:intergenic 30.0%
ATTCAAATGTGACCTCAAAT+TGG + chr1_4:21820193-21820212 Msa0156150:intron 30.0%
AATGGATGTTACAAAATGCA+AGG + chr1_4:21820281-21820300 Msa0156150:CDS 30.0%
ATATACAAGATAATGTGGGT+TGG + chr1_4:21820512-21820531 Msa0156150:CDS 30.0%
GGTACTTTATGTCTATAGAA+TGG - chr1_4:21820604-21820623 None:intergenic 30.0%
! TATAGACATAAAGTACCTAC+AGG + chr1_4:21820607-21820626 Msa0156150:CDS 30.0%
! ATAGACATAAAGTACCTACA+GGG + chr1_4:21820608-21820627 Msa0156150:CDS 30.0%
CAATTAAGGACAAATCATTC+AGG + chr1_4:21820871-21820890 Msa0156150:intron 30.0%
TATTAAACCTCCAATTCCTA+GGG - chr1_4:21820985-21821004 None:intergenic 30.0%
TTATTAAACCTCCAATTCCT+AGG - chr1_4:21820986-21821005 None:intergenic 30.0%
!!! AATGAGATTTTTTGCGGTTT+CGG - chr1_4:21821079-21821098 None:intergenic 30.0%
AAACCGCAAAAAATCTCATT+TGG + chr1_4:21821079-21821098 Msa0156150:intron 30.0%
GCAAAAAATCTCATTTGGTT+TGG + chr1_4:21821084-21821103 Msa0156150:intron 30.0%
!!! CAATTTTTTACTCAACCACA+TGG + chr1_4:21821119-21821138 Msa0156150:intron 30.0%
!! ATTTTTCTTAAGTTGCGGTT+TGG - chr1_4:21821177-21821196 None:intergenic 30.0%
TTTGTCTACGTGACATATAT+AGG - chr1_4:21821210-21821229 None:intergenic 30.0%
CAACTAGATAGATGTTATGT+TGG + chr1_4:21821774-21821793 Msa0156150:intron 30.0%
!!! GCCTCAATTTTTTTTTTTGG+TGG + chr1_4:21821808-21821827 Msa0156150:intron 30.0%
!!! ATTTTTTTTTTTGGTGGTCG+AGG + chr1_4:21821814-21821833 Msa0156150:intron 30.0%
AAGACTAATTCAAGTACTAG+TGG + chr1_4:21822005-21822024 Msa0156150:CDS 30.0%
TTAATGTAGTAGCCATGATT+GGG - chr1_4:21822088-21822107 None:intergenic 30.0%
ATTAATGTAGTAGCCATGAT+TGG - chr1_4:21822089-21822108 None:intergenic 30.0%
ATTTGAGCAATCATTGTACT+AGG - chr1_4:21822113-21822132 None:intergenic 30.0%
AATACACTATTTGTGAAGCA+AGG + chr1_4:21822134-21822153 Msa0156150:CDS 30.0%
TTGTAAAGATTATGCAGAGA+TGG + chr1_4:21822264-21822283 Msa0156150:CDS 30.0%
CAACTTTCACTGAAAGATAT+AGG + chr1_4:21822366-21822385 Msa0156150:CDS 30.0%
! ACTCCCTCAATTTTTACTTA+TGG + chr1_4:21822457-21822476 Msa0156150:CDS 30.0%
! CTCCCTCAATTTTTACTTAT+GGG + chr1_4:21822458-21822477 Msa0156150:CDS 30.0%
GTTCCCATAAGTAAAAATTG+AGG - chr1_4:21822464-21822483 None:intergenic 30.0%
!! TCTTATTCAATGACTAGCTT+AGG + chr1_4:21822563-21822582 Msa0156150:CDS 30.0%
!! ACTCCAAGAGATTAGTTTAT+TGG + chr1_4:21822851-21822870 Msa0156150:exon 30.0%
GAACCAATAAACTAATCTCT+TGG - chr1_4:21822857-21822876 None:intergenic 30.0%
!! GAGATTAGTTTATTGGTTCT+TGG + chr1_4:21822858-21822877 Msa0156150:exon 30.0%
TCCCCTAAAAAAGGTTAACA+TGG + chr1_4:21817238-21817257 Msa0156150:exon 35.0%
GATGGAACTGTTGATCTTAA+AGG + chr1_4:21817293-21817312 Msa0156150:CDS 35.0%
CCTATTCTCAAATCCAAAAC+CGG + chr1_4:21817320-21817339 Msa0156150:CDS 35.0%
! AAAGCTTGTTCCTTCTTTGT+TGG + chr1_4:21817350-21817369 Msa0156150:CDS 35.0%
AAATGGCATACCAACAAAGA+AGG - chr1_4:21817363-21817382 None:intergenic 35.0%
TTAAAAATGTACGTGGAAGG+AGG + chr1_4:21817563-21817582 Msa0156150:intron 35.0%
! AGAATGGCTTGTGGTATATA+AGG + chr1_4:21817592-21817611 Msa0156150:intron 35.0%
GGTATATAAGGATGGTGTAT+TGG + chr1_4:21817604-21817623 Msa0156150:intron 35.0%
! AAGAAAGTCATTGGTTGTGT+TGG + chr1_4:21817811-21817830 Msa0156150:intron 35.0%
TGAGTAAATTCTTGATGGAG+AGG + chr1_4:21818283-21818302 Msa0156150:intron 35.0%
TAAATTCTTGATGGAGAGGT+AGG + chr1_4:21818287-21818306 Msa0156150:intron 35.0%
AAGCCAGATGAACAAGATTA+AGG - chr1_4:21818388-21818407 None:intergenic 35.0%
! GATCCATATCCAGTGTTTTA+GGG - chr1_4:21818532-21818551 None:intergenic 35.0%
! TGATCCATATCCAGTGTTTT+AGG - chr1_4:21818533-21818552 None:intergenic 35.0%
! ATGGATCACCTTCTTTTTGA+AGG + chr1_4:21818545-21818564 Msa0156150:intron 35.0%
! TGGATCACCTTCTTTTTGAA+GGG + chr1_4:21818546-21818565 Msa0156150:intron 35.0%
!! CCCGAATAAAAGTACCATAT+AGG + chr1_4:21818964-21818983 Msa0156150:intron 35.0%
! TTTGATAGTTGGTCCCTATA+TGG - chr1_4:21818981-21819000 None:intergenic 35.0%
GGAGTGTAAGTGTTATAGAT+TGG + chr1_4:21819043-21819062 Msa0156150:intron 35.0%
GTGTAAGTGTTATAGATTGG+CGG + chr1_4:21819046-21819065 Msa0156150:intron 35.0%
!! ACAAGAGTTTGCTAATACTC+TGG - chr1_4:21819074-21819093 None:intergenic 35.0%
GTCAACGATATGATTCAATG+TGG - chr1_4:21819504-21819523 None:intergenic 35.0%
! GTATGAGGTATTTGAGAGAA+TGG + chr1_4:21819549-21819568 Msa0156150:CDS 35.0%
TTCTACCAATGTCACCAATT+GGG + chr1_4:21819642-21819661 Msa0156150:CDS 35.0%
GCAACATAAGCACCTAATAT+TGG - chr1_4:21819688-21819707 None:intergenic 35.0%
CAGTAACAAAGGTCCAATAA+CGG - chr1_4:21819726-21819745 None:intergenic 35.0%
GATAAAGGAAGCAGTAACAA+AGG - chr1_4:21819737-21819756 None:intergenic 35.0%
TGCTTCCTTTATCTACCTAT+TGG + chr1_4:21819744-21819763 Msa0156150:CDS 35.0%
TGAGGTCACATTTGAATCAT+TGG - chr1_4:21820190-21820209 None:intergenic 35.0%
TTACAGCTAGTAGTGTTCTA+TGG + chr1_4:21820315-21820334 Msa0156150:CDS 35.0%
ATCAAATTGATCAGCACCAA+TGG - chr1_4:21820392-21820411 None:intergenic 35.0%
AACTCTCATTCTTCAATTGG+TGG + chr1_4:21820440-21820459 Msa0156150:intron 35.0%
TGGATGTTCAGCATCTTTAT+TGG + chr1_4:21820460-21820479 Msa0156150:intron 35.0%
GGATGTTCAGCATCTTTATT+GGG + chr1_4:21820461-21820480 Msa0156150:intron 35.0%
!! ACCTTAGCCATTTTAGTGAA+GGG - chr1_4:21820637-21820656 None:intergenic 35.0%
TAAAATGGCTAAGGTCATTG+TGG + chr1_4:21820642-21820661 Msa0156150:CDS 35.0%
!! TATAGTTCTTTAGGGTCACT+AGG - chr1_4:21820697-21820716 None:intergenic 35.0%
! TTGGAAGAGTATGCAAAGAA+AGG + chr1_4:21820727-21820746 Msa0156150:CDS 35.0%
TGGAACTTATACCTCAATGT+GGG - chr1_4:21820775-21820794 None:intergenic 35.0%
ATGGAACTTATACCTCAATG+TGG - chr1_4:21820776-21820795 None:intergenic 35.0%
TGAAACTTAGTCGAATCACT+TGG - chr1_4:21820853-21820872 None:intergenic 35.0%
GAAAGAGGACTCTAGTAAAT+TGG - chr1_4:21820963-21820982 None:intergenic 35.0%
TATGTCTTGTGTTGTATGCT+AGG + chr1_4:21821027-21821046 Msa0156150:intron 35.0%
ATGTCTTGTGTTGTATGCTA+GGG + chr1_4:21821028-21821047 Msa0156150:intron 35.0%
!!! ATTTTTTGCGGTTTCGGTTT+GGG - chr1_4:21821073-21821092 None:intergenic 35.0%
AAATCGCAAACAAAACCATG+TGG - chr1_4:21821137-21821156 None:intergenic 35.0%
CAAATCAATGCAACTTGGAT+TGG - chr1_4:21821566-21821585 None:intergenic 35.0%
!! CAATCCAAGTTGCATTGATT+TGG + chr1_4:21821564-21821583 Msa0156150:intron 35.0%
CAAACCAAATCAATGCAACT+TGG - chr1_4:21821571-21821590 None:intergenic 35.0%
!! CAAGTTGCATTGATTTGGTT+TGG + chr1_4:21821569-21821588 Msa0156150:intron 35.0%
! AGATGAAAAAGCATGTGGTT+CGG - chr1_4:21821624-21821643 None:intergenic 35.0%
TGGACTTATCATGTCAAGTT+TGG + chr1_4:21821740-21821759 Msa0156150:intron 35.0%
GACAACGCATAATATATGCA+AGG - chr1_4:21821853-21821872 None:intergenic 35.0%
ACTAATTCAAGTACTAGTGG+AGG + chr1_4:21822008-21822027 Msa0156150:CDS 35.0%
GATAAGAATGATCCCAATCA+TGG + chr1_4:21822073-21822092 Msa0156150:CDS 35.0%
AAAATTCCACCAGCAAGTTT+AGG + chr1_4:21822188-21822207 Msa0156150:CDS 35.0%
ACAAATGTACCTAAACTTGC+TGG - chr1_4:21822200-21822219 None:intergenic 35.0%
AATTACTCTCCTTCAAAGGA+TGG + chr1_4:21822304-21822323 Msa0156150:CDS 35.0%
ATTACTCTCCTTCAAAGGAT+GGG + chr1_4:21822305-21822324 Msa0156150:CDS 35.0%
TTCAACTACTCCATGTTCTT+TGG - chr1_4:21822402-21822421 None:intergenic 35.0%
GAACATGGAGTAGTTGAAAA+TGG + chr1_4:21822404-21822423 Msa0156150:CDS 35.0%
!! AACAGCTGATGCATTTTTAG+AGG + chr1_4:21822481-21822500 Msa0156150:CDS 35.0%
!! AATCAAGATGAGAAGCATTG+AGG - chr1_4:21822676-21822695 None:intergenic 35.0%
! TTCTTCTGCAAGCACTTTTA+TGG - chr1_4:21822795-21822814 None:intergenic 35.0%
TTCAGAACAAAACTCAGACA+TGG + chr1_4:21822922-21822941 Msa0156150:three_prime_UTR 35.0%
!!! CCGGTTTTGGATTTGAGAAT+AGG - chr1_4:21817323-21817342 None:intergenic 40.0%
TCAAATCCAAAACCGGTTGT+TGG + chr1_4:21817327-21817346 Msa0156150:CDS 40.0%
! TGGCTTGTGGTATATAAGGA+TGG + chr1_4:21817596-21817615 Msa0156150:intron 40.0%
GGGTACTACTCAAAATACCT+CGG + chr1_4:21818051-21818070 Msa0156150:intron 40.0%
GGTACTACTCAAAATACCTC+GGG + chr1_4:21818052-21818071 Msa0156150:intron 40.0%
!!! GTATTTTAATCGAACACCCG+AGG - chr1_4:21818071-21818090 None:intergenic 40.0%
GCAAGAATACATTAAGGACC+TGG + chr1_4:21818171-21818190 Msa0156150:intron 40.0%
!! AAAGGAGTACCCTAAAACAC+TGG + chr1_4:21818520-21818539 Msa0156150:intron 40.0%
GTACCCTAAAACACTGGATA+TGG + chr1_4:21818526-21818545 Msa0156150:intron 40.0%
!! GGATCACCTTCTTTTTGAAG+GGG + chr1_4:21818547-21818566 Msa0156150:intron 40.0%
AATTCAATCCGTCAAACCCT+AGG + chr1_4:21818791-21818810 Msa0156150:intron 40.0%
GAACTTTGTGTGAGATCCTA+GGG - chr1_4:21818810-21818829 None:intergenic 40.0%
AGAACTTTGTGTGAGATCCT+AGG - chr1_4:21818811-21818830 None:intergenic 40.0%
TCATTGCTTAGATCCCCATT+GGG + chr1_4:21819011-21819030 Msa0156150:intron 40.0%
!!! CGACTTTTGGAACAAGAATG+TGG - chr1_4:21819328-21819347 None:intergenic 40.0%
!!! GTATTTTGGTGCAGTGTATG+AGG + chr1_4:21819534-21819553 Msa0156150:intron 40.0%
CTTCTACCAATGTCACCAAT+TGG + chr1_4:21819641-21819660 Msa0156150:CDS 40.0%
AAATGTGACCTCAAATTGGC+AGG + chr1_4:21820197-21820216 Msa0156150:intron 40.0%
AATGTGACCTCAAATTGGCA+GGG + chr1_4:21820198-21820217 Msa0156150:intron 40.0%
ACATCCATTTCATGACACTC+AGG - chr1_4:21820270-21820289 None:intergenic 40.0%
GAACACTACTAGCTGTAATG+TGG - chr1_4:21820313-21820332 None:intergenic 40.0%
AAGCCTAACATTTCCACCAT+TGG + chr1_4:21820373-21820392 Msa0156150:intron 40.0%
AAATTGATCAGCACCAATGG+TGG - chr1_4:21820389-21820408 None:intergenic 40.0%
GATATTGCAAGTCCAAGAGT+TGG - chr1_4:21820556-21820575 None:intergenic 40.0%
TCCCTTCACTAAAATGGCTA+AGG + chr1_4:21820633-21820652 Msa0156150:CDS 40.0%
!! GACCTTAGCCATTTTAGTGA+AGG - chr1_4:21820638-21820657 None:intergenic 40.0%
TTGTGGCTGCTATGAAGAAA+TGG + chr1_4:21820659-21820678 Msa0156150:CDS 40.0%
!! TCTTTAGGGTCACTAGGAAT+AGG - chr1_4:21820691-21820710 None:intergenic 40.0%
! AGGTAAGTAAAGGCTGGTTA+AGG - chr1_4:21820928-21820947 None:intergenic 40.0%
CTTGCTCTGTAGGTAAGTAA+AGG - chr1_4:21820938-21820957 None:intergenic 40.0%
! TAAATTGGTGCTTGCTCTGT+AGG - chr1_4:21820948-21820967 None:intergenic 40.0%
TGTCTTGTGTTGTATGCTAG+GGG + chr1_4:21821029-21821048 Msa0156150:intron 40.0%
!!! GGTTTCGGTTTGGGTTTTTT+CGG - chr1_4:21821064-21821083 None:intergenic 40.0%
!!! GATTTTTTGCGGTTTCGGTT+TGG - chr1_4:21821074-21821093 None:intergenic 40.0%
!! TCTTAAGTTGCGGTTTGGTT+TGG - chr1_4:21821172-21821191 None:intergenic 40.0%
!!! TGCTTTTTCATCTCACGCTT+AGG + chr1_4:21821631-21821650 Msa0156150:intron 40.0%
TTGCCATGTTGCATTCAGTA+GGG - chr1_4:21821695-21821714 None:intergenic 40.0%
TTTGCCATGTTGCATTCAGT+AGG - chr1_4:21821696-21821715 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+AGG - chr1_4:21821846-21821865 None:intergenic 40.0%
TGTATGCAGATTCCTCAACA+AGG + chr1_4:21821974-21821993 Msa0156150:intron 40.0%
TCTCCTCTACATGTGTAACT+GGG - chr1_4:21822043-21822062 None:intergenic 40.0%
CAAGGAACAACACTTGATAG+AGG + chr1_4:21822152-21822171 Msa0156150:CDS 40.0%
!! AATGTACCTAAACTTGCTGG+TGG - chr1_4:21822197-21822216 None:intergenic 40.0%
!! AGATGGACTAAAAACCCTAG+AGG + chr1_4:21822281-21822300 Msa0156150:CDS 40.0%
GAAGGAGAGTAATTCCTCTA+GGG - chr1_4:21822298-21822317 None:intergenic 40.0%
TGAAGGAGAGTAATTCCTCT+AGG - chr1_4:21822299-21822318 None:intergenic 40.0%
GAGGAATTACTCTCCTTCAA+AGG + chr1_4:21822300-21822319 Msa0156150:CDS 40.0%
CTTAGTGTAGCCAAAGAACA+TGG + chr1_4:21822389-21822408 Msa0156150:CDS 40.0%
CATGGAGTAGTTGAAAATGG+AGG + chr1_4:21822407-21822426 Msa0156150:CDS 40.0%
!! TCAATGACTAGCTTAGGCAT+TGG + chr1_4:21822569-21822588 Msa0156150:CDS 40.0%
AACAGTTTCACACATCACTG+AGG + chr1_4:21822619-21822638 Msa0156150:CDS 40.0%
AGTGCTTGCAGAAGAATTGA+AGG + chr1_4:21822799-21822818 Msa0156150:CDS 40.0%
ACTAATCTCTTGGAGTCACT+TGG - chr1_4:21822847-21822866 None:intergenic 40.0%
AGGTTAACATGGAAGAGGGA+AGG + chr1_4:21817249-21817268 Msa0156150:exon 45.0%
GGTTAACATGGAAGAGGGAA+GGG + chr1_4:21817250-21817269 Msa0156150:exon 45.0%
GTGAGTGAGTTCACACAAGA+TGG + chr1_4:21817275-21817294 Msa0156150:CDS 45.0%
!! AGCTTTCCAACAACCGGTTT+TGG - chr1_4:21817336-21817355 None:intergenic 45.0%
GGAACAAGCTTTCCAACAAC+CGG - chr1_4:21817342-21817361 None:intergenic 45.0%
GATGAGAGAGCAAGAGGAAA+TGG - chr1_4:21817380-21817399 None:intergenic 45.0%
TCCTCTTGCTCTCTCATCTA+TGG + chr1_4:21817382-21817401 Msa0156150:intron 45.0%
ACCATAGATGAGAGAGCAAG+AGG - chr1_4:21817386-21817405 None:intergenic 45.0%
! TGGAAGGAGGTACGTAAGAA+TGG + chr1_4:21817576-21817595 Msa0156150:intron 45.0%
AGGTACGTAAGAATGGCTTG+TGG + chr1_4:21817583-21817602 Msa0156150:intron 45.0%
AACCACAACAGACCTAGCAA+TGG + chr1_4:21817731-21817750 Msa0156150:intron 45.0%
GGTAGGTCATGTAGTAGCTT+TGG + chr1_4:21818304-21818323 Msa0156150:intron 45.0%
! GGAGTACCCCTTCAAAAAGA+AGG - chr1_4:21818556-21818575 None:intergenic 45.0%
GTCCATGGTACTAGTAAGCA+TGG + chr1_4:21818624-21818643 Msa0156150:intron 45.0%
TGTGAGATCCTAGGGTTTGA+CGG - chr1_4:21818802-21818821 None:intergenic 45.0%
GTCATTGCTTAGATCCCCAT+TGG + chr1_4:21819010-21819029 Msa0156150:intron 45.0%
ACTCCTTAGACCATCCCAAT+GGG - chr1_4:21819028-21819047 None:intergenic 45.0%
ACCAATGTCACCAATTGGGT+TGG + chr1_4:21819646-21819665 Msa0156150:CDS 45.0%
! ACCAACCCAATTGGTGACAT+TGG - chr1_4:21819650-21819669 None:intergenic 45.0%
CCAAATGGTACCAACCCAAT+TGG - chr1_4:21819659-21819678 None:intergenic 45.0%
!! CCAATTGGGTTGGTACCATT+TGG + chr1_4:21819656-21819675 Msa0156150:CDS 45.0%
! CATGACACTCAGGTGGTTTT+AGG - chr1_4:21820260-21820279 None:intergenic 45.0%
ACCACCTGAGTGTCATGAAA+TGG + chr1_4:21820263-21820282 Msa0156150:CDS 45.0%
TCCATTTCATGACACTCAGG+TGG - chr1_4:21820267-21820286 None:intergenic 45.0%
TACACTCTAGCAGTAGGAAC+AGG + chr1_4:21820343-21820362 Msa0156150:CDS 45.0%
! GCACCAATGGTGGAAATGTT+AGG - chr1_4:21820379-21820398 None:intergenic 45.0%
!! GATAATGTGGGTTGGACTCT+TGG + chr1_4:21820520-21820539 Msa0156150:CDS 45.0%
GGTTATGCACTTCCAACTCT+TGG + chr1_4:21820541-21820560 Msa0156150:CDS 45.0%
AGGGAGTCCCTTCACTAAAA+TGG + chr1_4:21820627-21820646 Msa0156150:CDS 45.0%
TTGATTCCACTCCCACATTG+AGG + chr1_4:21820761-21820780 Msa0156150:CDS 45.0%
CTTATACCTCAATGTGGGAG+TGG - chr1_4:21820770-21820789 None:intergenic 45.0%
CTCTGTAGGTAAGTAAAGGC+TGG - chr1_4:21820934-21820953 None:intergenic 45.0%
TACTAGAGTCCTCTTTCCCT+AGG + chr1_4:21820966-21820985 Msa0156150:intron 45.0%
AGTCCTCTTTCCCTAGGAAT+TGG + chr1_4:21820972-21820991 Msa0156150:intron 45.0%
!! AAGTTGCGGTTTGGTTTGGT+TGG - chr1_4:21821168-21821187 None:intergenic 45.0%
!! GCAACTTGGATTGGTTCGTA+TGG - chr1_4:21821557-21821576 None:intergenic 45.0%
!!! GCATGTGGTTCGGTTTTGTT+CGG - chr1_4:21821614-21821633 None:intergenic 45.0%
! GCGTGAGATGAAAAAGCATG+TGG - chr1_4:21821629-21821648 None:intergenic 45.0%
ACACCCTACTGAATGCAACA+TGG + chr1_4:21821689-21821708 Msa0156150:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr1_4:21821875-21821894 None:intergenic 45.0%
! TCTTGACACATGCCTTGTTG+AGG - chr1_4:21821989-21822008 None:intergenic 45.0%
ATGCCCAGTTACACATGTAG+AGG + chr1_4:21822037-21822056 Msa0156150:CDS 45.0%
GTCTCCTCTACATGTGTAAC+TGG - chr1_4:21822044-21822063 None:intergenic 45.0%
TTCCTATGCCCATCCTTTGA+AGG - chr1_4:21822316-21822335 None:intergenic 45.0%
! TCCAGAAAGCATGAAGAGCT+TGG + chr1_4:21822535-21822554 Msa0156150:CDS 45.0%
! CCAGAAAGCATGAAGAGCTT+GGG + chr1_4:21822536-21822555 Msa0156150:CDS 45.0%
TCACACATCACTGAGGAACA+TGG + chr1_4:21822626-21822645 Msa0156150:CDS 45.0%
ACTGAGGAACATGGTCACAA+AGG + chr1_4:21822635-21822654 Msa0156150:CDS 45.0%
CTGAGGAACATGGTCACAAA+GGG + chr1_4:21822636-21822655 Msa0156150:CDS 45.0%
!!! TTAACAATTTTAATAAAAAA+AGG - chr1_4:21817547-21817566 None:intergenic 5.0%
!!! ATTATTGTTTTATTTTTTTA+AGG + chr1_4:21818456-21818475 Msa0156150:intron 5.0%
!!! TTATTGTTTTATTTTTTTAA+GGG + chr1_4:21818457-21818476 Msa0156150:intron 5.0%
!!! TTTTTTTTTTTTTTAAAGAT+AGG - chr1_4:21818772-21818791 None:intergenic 5.0%
!! TTAATTAAGTAAAAATATAT+AGG + chr1_4:21819801-21819820 Msa0156150:intron 5.0%
TGCCATTGCTAGGTCTGTTG+TGG - chr1_4:21817736-21817755 None:intergenic 50.0%
! AACTGTGGCTTGCCATTGCT+AGG - chr1_4:21817746-21817765 None:intergenic 50.0%
GGCCATGCTTACTAGTACCA+TGG - chr1_4:21818629-21818648 None:intergenic 50.0%
TGCTTAGATCCCCATTGGGA+TGG + chr1_4:21819015-21819034 Msa0156150:intron 50.0%
ATCCCCATTGGGATGGTCTA+AGG + chr1_4:21819022-21819041 Msa0156150:intron 50.0%
CTCCTTAGACCATCCCAATG+GGG - chr1_4:21819027-21819046 None:intergenic 50.0%
CACTCCTTAGACCATCCCAA+TGG - chr1_4:21819029-21819048 None:intergenic 50.0%
TATGTTGCTGACGCCTACCT+TGG + chr1_4:21819700-21819719 Msa0156150:CDS 50.0%
CAAAGGTCCAATAACGGCCA+AGG - chr1_4:21819720-21819739 None:intergenic 50.0%
AGACATGCCCTGCCAATTTG+AGG - chr1_4:21820208-21820227 None:intergenic 50.0%
!!! CACTCAGGTGGTTTTAGGCT+TGG - chr1_4:21820255-21820274 None:intergenic 50.0%
GTGCTCTACACTCTAGCAGT+AGG + chr1_4:21820337-21820356 Msa0156150:CDS 50.0%
ACTCTAGCAGTAGGAACAGG+TGG + chr1_4:21820346-21820365 Msa0156150:intron 50.0%
TTAGTGAAGGGACTCCCTGT+AGG - chr1_4:21820625-21820644 None:intergenic 50.0%
CCTCCAATTCCTAGGGAAAG+AGG - chr1_4:21820978-21820997 None:intergenic 50.0%
CCTCTTTCCCTAGGAATTGG+AGG + chr1_4:21820975-21820994 Msa0156150:intron 50.0%
!! TTGGATTGGTTCGTATGGCG+CGG - chr1_4:21821552-21821571 None:intergenic 50.0%
! TGCATTCAGTAGGGTGTTCG+CGG - chr1_4:21821686-21821705 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr1_4:21821876-21821895 None:intergenic 50.0%
CTCCTTCAAAGGATGGGCAT+AGG + chr1_4:21822311-21822330 Msa0156150:CDS 50.0%
CCCAAGCTCTTCATGCTTTC+TGG - chr1_4:21822539-21822558 None:intergenic 50.0%
AGGAACATGGTCACAAAGGG+TGG + chr1_4:21822639-21822658 Msa0156150:CDS 50.0%
ACGCCTACCTTGGCCGTTAT+TGG + chr1_4:21819710-21819729 Msa0156150:CDS 55.0%
GGTCCAATAACGGCCAAGGT+AGG - chr1_4:21819716-21819735 None:intergenic 55.0%
GGTGGTCGAGGTTTGAACCT+CGG + chr1_4:21821826-21821845 Msa0156150:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_4:21821880-21821899 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_4:21821877-21821896 Msa0156150:intron 55.0%
CTGAGCTAAGCTCACGAGGA+CGG + chr1_4:21821881-21821900 Msa0156150:intron 55.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG - chr1_4:21821671-21821690 None:intergenic 60.0%
! TCAGTAGGGTGTTCGCGGTG+CGG - chr1_4:21821681-21821700 None:intergenic 60.0%
! AGGGTGTTCGCGGTGCGGTT+TGG - chr1_4:21821676-21821695 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 21817178 21823065 21817178 ID=Msa0156150;Name=Msa0156150
chr1_4 mRNA 21817178 21823065 21817178 ID=Msa0156150-mRNA-1;Parent=Msa0156150;Name=Msa0156150-mRNA-1;_AED=0.04;_eAED=0.04;_QI=79|0.75|0.6|1|1|1|5|200|557
chr1_4 exon 21817178 21817371 21817178 ID=Msa0156150-mRNA-1:exon:7885;Parent=Msa0156150-mRNA-1
chr1_4 exon 21819548 21819765 21819548 ID=Msa0156150-mRNA-1:exon:7886;Parent=Msa0156150-mRNA-1
chr1_4 exon 21820219 21820364 21820219 ID=Msa0156150-mRNA-1:exon:7887;Parent=Msa0156150-mRNA-1
chr1_4 exon 21820471 21820782 21820471 ID=Msa0156150-mRNA-1:exon:7888;Parent=Msa0156150-mRNA-1
chr1_4 exon 21821983 21823065 21821983 ID=Msa0156150-mRNA-1:exon:7889;Parent=Msa0156150-mRNA-1
chr1_4 five_prime_UTR 21817178 21817256 21817178 ID=Msa0156150-mRNA-1:five_prime_utr;Parent=Msa0156150-mRNA-1
chr1_4 CDS 21817257 21817371 21817257 ID=Msa0156150-mRNA-1:cds;Parent=Msa0156150-mRNA-1
chr1_4 CDS 21819548 21819765 21819548 ID=Msa0156150-mRNA-1:cds;Parent=Msa0156150-mRNA-1
chr1_4 CDS 21820219 21820364 21820219 ID=Msa0156150-mRNA-1:cds;Parent=Msa0156150-mRNA-1
chr1_4 CDS 21820471 21820782 21820471 ID=Msa0156150-mRNA-1:cds;Parent=Msa0156150-mRNA-1
chr1_4 CDS 21821983 21822865 21821983 ID=Msa0156150-mRNA-1:cds;Parent=Msa0156150-mRNA-1
chr1_4 three_prime_UTR 21822866 21823065 21822866 ID=Msa0156150-mRNA-1:three_prime_utr;Parent=Msa0156150-mRNA-1
Gene Sequence

>Msa0156150

ATGGAAGAGGGAAGGGTAGTGAGTGAGTTCACACAAGATGGAACTGTTGATCTTAAAGGGAAACCTATTCTCAAATCCAAAACCGGTTGTTGGAAAGCTTGTTCCTTCTTTGTTGTGTATGAGGTATTTGAGAGAATGGCTTATTATGGGATATCATCAAATTTGATATTATATTTAATAAAGAAGCTTCATCAAGGTACTGTGACTTCTTCTACCAATGTCACCAATTGGGTTGGTACCATTTGGATCACTCCAATATTAGGTGCTTATGTTGCTGACGCCTACCTTGGCCGTTATTGGACCTTTGTTACTGCTTCCTTTATCTACCTATTGGGCATGTCTATGCTCACATTATCAGTTTCTCTTCCAAGCCTAAAACCACCTGAGTGTCATGAAATGGATGTTACAAAATGCAAGGAAGCTTCCACATTACAGCTAGTAGTGTTCTATGGTGCTCTACACTCTAGCAGTAGGAACAGCATCTTTATTGGGACCCTTTTTGCAAATTCTGTTTTAGTCTATATACAAGATAATGTGGGTTGGACTCTTGGTTATGCACTTCCAACTCTTGGACTTGCAATATCTATCATAATATTTTTGGCAGGCACACCATTCTATAGACATAAAGTACCTACAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATTGTGGCTGCTATGAAGAAATGGAATGTGCCTATTCCTAGTGACCCTAAAGAACTATATGAACTTGATTTGGAAGAGTATGCAAAGAAAGGAAGTGTTAGAATTGATTCCACTCCCACATTGAGATTCCTCAACAAGGCATGTGTCAAGACTAATTCAAGTACTAGTGGAGGTGTGTTATGCCCAGTTACACATGTAGAGGAGACCAAACAAATGATAAGAATGATCCCAATCATGGCTACTACATTAATTCCTAGTACAATGATTGCTCAAATAAATACACTATTTGTGAAGCAAGGAACAACACTTGATAGAGGCATTGGGAGTTTCAAAATTCCACCAGCAAGTTTAGGTACATTTGTGACAATATCAATGCTTATAAGTGTTGTGCTCTATGATCGTTTCTTTGTAAAGATTATGCAGAGATGGACTAAAAACCCTAGAGGAATTACTCTCCTTCAAAGGATGGGCATAGGAATCATAATTCATATAGTGATTATGGTAGTTTCAACTTTCACTGAAAGATATAGGCTTAGTGTAGCCAAAGAACATGGAGTAGTTGAAAATGGAGGATTAGTTCCATTGAGCATATTCATTTTACTCCCTCAATTTTTACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCTAAAATTGAGTTCTTCTATGATCAAGCTCCAGAAAGCATGAAGAGCTTGGGCACTTCTTATTCAATGACTAGCTTAGGCATTGGAAATTTTATTAGTACATTTCTTCTATCAACAGTTTCACACATCACTGAGGAACATGGTCACAAAGGGTGGATTTTGAATAACCTCAATGCTTCTCATCTTGATTACTACTATGCATTTTTGGAAATATTAAACATCTTGAACTTTATCTTCTTTTGTATTGTTACTAAGTATTATGTATATAGAGCTGAAATTTCAGATTCCATAAAAGTGCTTGCAGAAGAATTGAAGGAGAAGAAAAGTGTTGTGTCATACCAAGTGACTCCAAGAGATTAG
Protein sequence

>Msa0156150

MEEGRVVSEFTQDGTVDLKGKPILKSKTGCWKACSFFVVYEVFERMAYYGISSNLILYLIKKLHQGTVTSSTNVTNWVGTIWITPILGAYVADAYLGRYWTFVTASFIYLLGMSMLTLSVSLPSLKPPECHEMDVTKCKEASTLQLVVFYGALHSSSRNSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLAGTPFYRHKVPTGSPFTKMAKVIVAAMKKWNVPIPSDPKELYELDLEEYAKKGSVRIDSTPTLRFLNKACVKTNSSTSGGVLCPVTHVEETKQMIRMIPIMATTLIPSTMIAQINTLFVKQGTTLDRGIGSFKIPPASLGTFVTISMLISVVLYDRFFVKIMQRWTKNPRGITLLQRMGIGIIIHIVIMVVSTFTERYRLSVAKEHGVVENGGLVPLSIFILLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFISTFLLSTVSHITEEHGHKGWILNNLNASHLDYYYAFLEILNILNFIFFCIVTKYYVYRAEISDSIKVLAEELKEKKSVVSYQVTPRD*