AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064820 MtrunA17_Chr1g0166711 98.482 593 9 0 1 593 1 593 0.0 1199
Msa0064820 MtrunA17_Chr1g0187241 81.026 585 107 3 1 582 1 584 0.0 998
Msa0064820 MtrunA17_Chr1g0166791 74.874 593 145 2 1 592 3 592 0.0 920
Msa0064820 MtrunA17_Chr1g0166731 93.162 468 32 0 112 579 9 476 0.0 882
Msa0064820 MtrunA17_Chr1g0166741 72.260 584 154 2 1 583 3 579 0.0 856
Msa0064820 MtrunA17_Chr1g0166771 72.527 546 142 2 39 583 5 543 0.0 796
Msa0064820 MtrunA17_Chr7g0261771 63.830 564 201 3 9 570 15 577 0.0 767
Msa0064820 MtrunA17_Chr7g0261881 61.646 571 214 4 2 570 6 573 0.0 765
Msa0064820 MtrunA17_Chr7g0261811 61.471 571 215 4 2 570 6 573 0.0 756
Msa0064820 MtrunA17_Chr7g0261791 60.601 566 219 3 2 564 6 570 0.0 729
Msa0064820 MtrunA17_Chr7g0261851 61.837 566 213 3 1 564 4 568 0.0 718
Msa0064820 MtrunA17_Chr7g0261661 59.794 485 188 5 113 592 1 483 0.0 610
Msa0064820 MtrunA17_Chr3g0114501 52.241 580 269 4 9 584 6 581 0.0 608
Msa0064820 MtrunA17_Chr7g0261751 57.755 490 168 4 8 459 14 502 0.0 585
Msa0064820 MtrunA17_Chr8g0375311 45.884 571 296 3 1 561 12 579 0.0 537
Msa0064820 MtrunA17_Chr3g0104011 46.690 574 291 7 1 567 1 566 0.0 525
Msa0064820 MtrunA17_Chr8g0375291 44.742 561 298 3 2 556 20 574 1.14e-177 515
Msa0064820 MtrunA17_Chr7g0241741 44.974 567 300 5 10 570 7 567 1.39e-175 509
Msa0064820 MtrunA17_Chr8g0375351 42.576 559 312 2 9 561 24 579 7.30e-172 500
Msa0064820 MtrunA17_Chr4g0005901 44.563 561 299 5 10 564 17 571 4.65e-170 495
Msa0064820 MtrunA17_Chr8g0375321 42.226 566 318 2 2 561 14 576 1.05e-168 492
Msa0064820 MtrunA17_Chr8g0375341 42.397 559 313 2 9 561 24 579 2.20e-168 491
Msa0064820 MtrunA17_Chr8g0375331 43.494 538 295 2 8 539 7 541 1.04e-166 486
Msa0064820 MtrunA17_Chr7g0261731 64.286 336 118 2 9 343 15 349 9.68e-164 471
Msa0064820 MtrunA17_Chr8g0375361 43.268 557 307 2 11 561 25 578 3.60e-157 463
Msa0064820 MtrunA17_Chr7g0240381 41.391 575 310 8 9 572 13 571 9.46e-154 454
Msa0064820 MtrunA17_Chr3g0077151 40.741 567 301 6 3 564 7 543 2.76e-149 441
Msa0064820 MtrunA17_Chr4g0014871 40.108 556 309 7 13 564 18 553 3.74e-146 434
Msa0064820 MtrunA17_Chr4g0014791 41.727 556 297 7 13 564 17 549 4.09e-145 431
Msa0064820 MtrunA17_Chr3g0112611 40.068 584 329 10 13 584 20 594 7.95e-145 431
Msa0064820 MtrunA17_Chr3g0142101 39.753 566 319 9 1 561 15 563 2.37e-144 430
Msa0064820 MtrunA17_Chr3g0112671 39.964 558 313 6 13 565 21 561 3.26e-144 429
Msa0064820 MtrunA17_Chr4g0008651 39.324 562 325 8 9 564 18 569 2.27e-143 427
Msa0064820 MtrunA17_Chr4g0014781 40.647 556 305 8 13 564 17 551 3.05e-141 421
Msa0064820 MtrunA17_Chr3g0142091 40.603 564 321 7 2 561 3 556 1.15e-140 420
Msa0064820 MtrunA17_Chr4g0014841 41.219 558 301 8 11 564 15 549 1.86e-140 419
Msa0064820 MtrunA17_Chr5g0399061 39.199 574 330 7 17 580 19 583 2.54e-139 417
Msa0064820 MtrunA17_Chr5g0422881 39.783 553 324 5 19 564 14 564 2.70e-138 414
Msa0064820 MtrunA17_Chr4g0014801 40.468 556 306 8 13 564 17 551 6.19e-137 410
Msa0064820 MtrunA17_Chr5g0400371 35.932 590 359 7 9 589 96 675 5.13e-133 404
Msa0064820 MtrunA17_Chr5g0399071 39.212 584 335 7 11 579 7 585 1.23e-132 400
Msa0064820 MtrunA17_Chr4g0054891 36.477 562 341 5 9 561 94 648 4.71e-132 401
Msa0064820 MtrunA17_Chr4g0056431 39.161 572 329 6 17 577 17 580 1.30e-129 392
Msa0064820 MtrunA17_Chr7g0217461 36.414 541 330 5 11 540 10 547 1.04e-127 387
Msa0064820 MtrunA17_Chr7g0255621 35.826 575 351 9 25 586 20 589 8.02e-126 383
Msa0064820 MtrunA17_Chr7g0214461 35.189 557 349 5 25 577 79 627 7.61e-125 381
Msa0064820 MtrunA17_Chr1g0213711 34.806 566 351 7 25 585 21 573 6.10e-123 375
Msa0064820 MtrunA17_Chr8g0353031 38.710 558 307 6 26 569 19 555 8.27e-123 374
Msa0064820 MtrunA17_Chr5g0439381 38.356 584 325 8 12 579 15 579 8.82e-123 374
Msa0064820 MtrunA17_Chr4g0063591 38.859 561 323 5 10 561 7 556 1.99e-122 373
Msa0064820 MtrunA17_Chr7g0218851 35.149 569 356 5 18 580 39 600 5.60e-122 373
Msa0064820 MtrunA17_Chr7g0255601 35.374 588 356 11 16 588 18 596 6.14e-122 373
Msa0064820 MtrunA17_Chr7g0255611 35.169 563 349 7 12 564 18 574 7.11e-122 372
Msa0064820 MtrunA17_Chr5g0415791 36.620 568 347 6 25 581 29 594 1.46e-120 369
Msa0064820 MtrunA17_Chr2g0284701 36.014 572 348 7 13 566 19 590 3.51e-118 363
Msa0064820 MtrunA17_Chr3g0133341 35.472 561 347 6 21 573 10 563 5.12e-116 356
Msa0064820 MtrunA17_Chr8g0362711 34.683 568 347 6 14 565 13 572 2.26e-115 355
Msa0064820 MtrunA17_Chr7g0214731 35.752 565 348 8 16 566 51 614 1.68e-114 355
Msa0064820 MtrunA17_Chr4g0011041 33.391 575 357 8 2 561 15 578 3.46e-111 344
Msa0064820 MtrunA17_Chr5g0415961 34.315 577 355 8 7 566 5 574 3.51e-110 342
Msa0064820 MtrunA17_Chr2g0276751 35.366 574 345 9 1 568 14 567 1.23e-108 338
Msa0064820 MtrunA17_Chr4g0014861 40.094 424 242 5 145 564 13 428 1.68e-108 332
Msa0064820 MtrunA17_Chr4g0011471 34.259 540 331 6 36 561 27 556 1.05e-103 325
Msa0064820 MtrunA17_Chr1g0193391 32.517 572 363 10 13 576 3 559 8.96e-102 321
Msa0064820 MtrunA17_Chr4g0060001 33.279 610 375 11 1 586 1 602 4.59e-101 319
Msa0064820 MtrunA17_Chr8g0390331 31.944 576 368 8 24 588 14 576 2.49e-99 313
Msa0064820 MtrunA17_Chr7g0271221 32.753 574 366 7 12 580 4 562 4.26e-99 313
Msa0064820 MtrunA17_Chr4g0059971 32.605 549 351 7 31 564 40 584 1.08e-97 310
Msa0064820 MtrunA17_Chr4g0059991 32.920 565 361 6 31 580 28 589 2.24e-97 309
Msa0064820 MtrunA17_Chr3g0082631 38.526 475 247 8 109 564 11 459 3.67e-97 305
Msa0064820 MtrunA17_Chr4g0059981 31.707 615 372 8 6 584 2 604 1.48e-96 307
Msa0064820 MtrunA17_Chr8g0379971 32.609 598 366 10 1 566 1 593 3.79e-93 298
Msa0064820 MtrunA17_Chr8g0362781 31.570 567 362 11 18 565 23 582 3.84e-93 298
Msa0064820 MtrunA17_Chr7g0240271 30.952 588 387 6 8 582 7 588 3.93e-93 298
Msa0064820 MtrunA17_Chr6g0451841 32.799 561 324 14 32 570 12 541 9.51e-93 295
Msa0064820 MtrunA17_Chr1g0157601 32.234 546 346 9 29 561 19 553 1.17e-91 293
Msa0064820 MtrunA17_Chr8g0362801 35.043 468 289 7 113 568 1 465 1.59e-91 290
Msa0064820 MtrunA17_Chr4g0069581 32.717 541 348 6 42 578 3 531 1.25e-90 290
Msa0064820 MtrunA17_Chr1g0147631 31.942 551 350 10 25 561 25 564 3.59e-88 285
Msa0064820 MtrunA17_Chr2g0331511 31.661 578 355 16 36 591 32 591 2.83e-86 281
Msa0064820 MtrunA17_Chr8g0379991 32.513 569 333 11 46 566 1 566 5.15e-86 278
Msa0064820 MtrunA17_Chr2g0331471 32.418 546 334 13 36 561 99 629 4.00e-85 280
Msa0064820 MtrunA17_Chr2g0331521 29.508 549 368 9 25 561 22 563 1.24e-84 275
Msa0064820 MtrunA17_Chr7g0261721 61.500 200 77 0 368 567 5 204 1.94e-84 263
Msa0064820 MtrunA17_Chr2g0331481 32.051 546 336 13 36 561 36 566 3.23e-82 270
Msa0064820 MtrunA17_Chr7g0240281 31.942 551 358 6 25 562 24 570 3.84e-82 269
Msa0064820 MtrunA17_Chr2g0331461 31.597 576 361 14 36 592 36 597 1.58e-80 266
Msa0064820 MtrunA17_Chr1g0157611 30.488 574 372 12 13 570 2 564 2.15e-80 263
Msa0064820 MtrunA17_Chr1g0157621 32.197 528 335 11 46 561 1 517 2.03e-79 261
Msa0064820 MtrunA17_Chr3g0142111 41.391 302 171 3 8 307 29 326 1.05e-78 252
Msa0064820 MtrunA17_Chr4g0003761 29.474 570 380 11 21 578 27 586 2.99e-77 256
Msa0064820 MtrunA17_Chr7g0235521 32.359 479 297 7 113 570 1 473 2.87e-74 245
Msa0064820 MtrunA17_Chr7g0240211 32.150 479 298 7 113 570 1 473 1.64e-72 240
Msa0064820 MtrunA17_Chr7g0240181 32.150 479 298 7 113 570 1 473 1.78e-72 240
Msa0064820 MtrunA17_Chr7g0240131 31.942 479 299 7 113 570 1 473 3.71e-72 239
Msa0064820 MtrunA17_Chr2g0326211 28.371 571 365 11 13 564 2 547 4.51e-72 241
Msa0064820 MtrunA17_Chr2g0325951 28.571 567 369 9 13 564 2 547 5.17e-72 241
Msa0064820 MtrunA17_Chr1g0166721 84.615 130 15 1 1 130 1 125 8.36e-71 224
Msa0064820 MtrunA17_Chr2g0325961 28.196 571 367 11 13 564 2 548 3.78e-69 233
Msa0064820 MtrunA17_Chr7g0240151 31.106 479 285 8 113 570 1 455 1.46e-66 224
Msa0064820 MtrunA17_Chr1g0177591 27.866 567 366 15 8 561 28 564 4.36e-65 223
Msa0064820 MtrunA17_Chr5g0415841 29.247 465 310 6 113 564 1 459 3.04e-64 218
Msa0064820 MtrunA17_Chr7g0234381 32.667 450 269 7 112 561 3 418 1.00e-62 213
Msa0064820 MtrunA17_Chr7g0234151 32.667 450 269 7 112 561 3 418 1.81e-61 209
Msa0064820 MtrunA17_Chr7g0234181 32.589 448 266 7 115 561 1 413 2.74e-61 208
Msa0064820 MtrunA17_Chr3g0112631 38.488 291 165 6 300 583 3 286 3.60e-60 202
Msa0064820 MtrunA17_Chr3g0142121 38.258 264 151 5 301 561 11 265 6.72e-54 185
Msa0064820 MtrunA17_Chr1g0177611 28.306 431 283 9 142 561 20 435 3.12e-52 185
Msa0064820 MtrunA17_Chr7g0261831 57.419 155 63 3 255 407 1 154 6.16e-52 177
Msa0064820 MtrunA17_Chr4g0060071 33.444 302 192 4 270 565 1 299 9.82e-52 180
Msa0064820 MtrunA17_Chr1g0177631 28.176 433 281 10 142 561 20 435 1.59e-49 177
Msa0064820 MtrunA17_Chr7g0261671 69.903 103 31 0 9 111 16 118 5.15e-48 163
Msa0064820 MtrunA17_Chr3g0112651 39.474 190 108 2 112 301 21 203 1.42e-42 152
Msa0064820 MtrunA17_Chr4g0014851 45.455 110 60 0 13 122 18 127 1.43e-26 106
Msa0064820 MtrunA17_Chr1g0147591 33.846 195 112 4 156 339 10 198 1.61e-25 104
Msa0064820 MtrunA17_Chr4g0060061 41.322 121 71 0 138 258 8 128 5.48e-25 100
Msa0064820 MtrunA17_Chr7g0261821 58.209 67 28 0 502 568 1 67 2.09e-24 96.7
Msa0064820 MtrunA17_Chr3g0112661 43.434 99 56 0 13 111 19 117 4.12e-21 89.7
Msa0064820 MtrunA17_Chr2g0326221 26.050 238 146 4 328 564 15 223 4.28e-17 80.9
Msa0064820 MtrunA17_Chr4g0060051 38.889 108 63 1 1 108 1 105 1.39e-16 76.6
Msa0064820 MtrunA17_Chr3g0082621 45.070 71 39 0 41 111 2 72 1.67e-14 69.3
Msa0064820 MtrunA17_Chr8g0362791 38.554 83 51 0 31 113 42 124 4.64e-14 69.7
Msa0064820 MtrunA17_Chr8g0382601 33.721 86 56 1 208 292 1 86 1.42e-11 60.8
Msa0064820 MtrunA17_Chr7g0261841 50.000 54 26 1 113 165 1 54 1.63e-11 60.8
Msa0064820 MtrunA17_Chr1g0166761 68.421 38 11 1 1 38 3 39 2.12e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064820 AT5G46050.1 68.621 580 178 4 5 582 5 582 0.0 804
Msa0064820 AT5G46040.1 64.786 585 199 5 6 588 6 585 0.0 748
Msa0064820 AT5G46050.2 68.432 472 145 4 113 582 1 470 0.0 649
Msa0064820 AT2G40460.1 53.521 568 251 6 1 566 1 557 0.0 611
Msa0064820 AT2G02040.1 45.217 575 302 4 1 565 12 583 0.0 538
Msa0064820 AT3G54140.1 46.167 574 294 7 1 567 1 566 0.0 526
Msa0064820 AT3G54140.2 46.167 574 294 7 1 567 1 566 0.0 526
Msa0064820 AT5G01180.2 44.870 575 294 6 1 564 1 563 1.51e-175 509
Msa0064820 AT5G01180.3 44.870 575 294 6 1 564 1 563 1.51e-175 509
Msa0064820 AT5G01180.1 44.870 575 294 6 1 564 1 563 1.51e-175 509
Msa0064820 AT1G62200.1 42.729 557 305 2 7 557 32 580 2.61e-169 494
Msa0064820 AT1G62200.2 40.785 586 304 3 7 557 32 609 2.50e-163 480
Msa0064820 AT1G62200.3 40.785 586 304 3 7 557 46 623 3.94e-163 480
Msa0064820 AT2G02020.1 42.096 563 282 6 1 556 13 538 3.33e-158 464
Msa0064820 AT3G53960.1 41.536 573 315 9 13 576 23 584 7.70e-150 445
Msa0064820 AT2G37900.1 39.177 559 319 6 13 565 24 567 4.38e-143 427
Msa0064820 AT3G54450.1 40.288 556 297 7 23 564 8 542 1.82e-142 424
Msa0064820 AT2G02020.2 39.076 563 278 8 1 556 13 517 8.66e-138 411
Msa0064820 AT1G22540.1 40.468 556 304 9 15 564 18 552 8.02e-137 410
Msa0064820 AT1G32450.1 37.167 600 350 9 9 585 19 614 5.49e-133 402
Msa0064820 AT1G12110.1 38.103 580 337 7 17 584 17 586 1.98e-132 400
Msa0064820 AT1G68570.1 39.427 558 324 7 17 564 15 568 1.29e-130 395
Msa0064820 AT1G72140.1 37.108 574 322 8 2 565 9 553 2.99e-130 393
Msa0064820 AT1G68570.2 39.564 551 321 6 41 581 7 555 3.16e-130 393
Msa0064820 AT2G26690.1 39.748 556 312 6 16 561 13 555 8.45e-128 387
Msa0064820 AT1G22550.1 39.092 573 320 10 2 564 6 559 5.78e-127 385
Msa0064820 AT2G37900.2 39.880 499 279 6 73 565 5 488 1.49e-125 379
Msa0064820 AT1G72120.1 39.007 564 313 9 9 564 12 552 1.82e-124 378
Msa0064820 AT1G22570.1 40.280 571 317 9 2 564 6 560 1.95e-123 376
Msa0064820 AT1G72125.1 38.968 562 320 8 9 564 12 556 3.26e-123 375
Msa0064820 AT4G21680.1 35.575 565 348 4 11 563 12 572 2.31e-122 374
Msa0064820 AT2G26690.2 39.548 531 298 6 41 561 5 522 3.31e-120 367
Msa0064820 AT1G72130.1 35.584 548 310 8 23 563 21 532 1.08e-119 365
Msa0064820 AT3G21670.1 36.318 603 346 8 8 591 7 590 1.46e-117 361
Msa0064820 AT5G19640.1 35.294 578 348 8 2 572 34 592 2.52e-117 361
Msa0064820 AT2G26690.3 39.464 522 293 6 50 561 2 510 3.07e-117 358
Msa0064820 AT1G59740.1 35.826 575 355 6 9 577 23 589 3.36e-117 360
Msa0064820 AT5G13400.1 36.444 568 350 6 16 572 52 619 5.47e-116 358
Msa0064820 AT1G22570.2 40.789 532 292 8 41 564 7 523 3.11e-115 353
Msa0064820 AT1G69870.1 34.888 579 357 7 24 592 48 616 1.43e-112 349
Msa0064820 AT1G69850.1 33.448 580 359 5 13 570 11 585 1.56e-111 346
Msa0064820 AT1G27040.1 33.514 552 362 3 13 563 13 560 7.18e-107 333
Msa0064820 AT1G27040.2 33.514 552 362 3 13 563 9 556 7.61e-107 333
Msa0064820 AT1G33440.1 35.472 561 341 8 9 561 20 567 2.44e-105 330
Msa0064820 AT1G27040.3 33.710 531 347 3 34 563 2 528 2.59e-103 323
Msa0064820 AT3G16180.1 33.154 558 348 9 21 561 16 565 7.52e-103 323
Msa0064820 AT1G18880.1 33.333 564 353 8 31 576 23 581 5.02e-99 313
Msa0064820 AT1G52190.1 31.734 542 349 8 36 561 30 566 5.13e-98 311
Msa0064820 AT1G27080.1 33.105 583 359 10 21 592 8 570 1.43e-95 304
Msa0064820 AT5G62730.1 31.088 579 363 7 1 566 32 587 3.08e-93 298
Msa0064820 AT1G72130.2 35.023 434 250 6 137 563 6 414 1.84e-91 288
Msa0064820 AT1G72130.3 35.023 434 250 6 137 563 6 414 1.84e-91 288
Msa0064820 AT5G14940.1 30.851 564 349 10 25 569 5 546 5.49e-91 291
Msa0064820 AT5G28470.2 32.428 552 349 11 23 561 13 553 1.13e-89 288
Msa0064820 AT5G62680.1 31.942 551 357 5 31 566 47 594 1.32e-89 290
Msa0064820 AT5G62730.2 31.261 547 342 7 33 566 3 528 3.85e-88 283
Msa0064820 AT3G25260.1 32.907 547 323 13 17 561 11 515 6.90e-88 282
Msa0064820 AT3G47960.1 32.062 577 364 8 31 584 65 636 1.79e-87 285
Msa0064820 AT1G27080.2 33.212 548 335 10 56 592 1 528 2.91e-87 281
Msa0064820 AT5G28470.1 32.246 552 348 12 23 561 13 551 7.76e-87 281
Msa0064820 AT3G45650.1 29.706 579 375 8 6 576 1 555 9.23e-84 273
Msa0064820 AT3G01350.1 29.983 577 350 12 24 569 3 556 9.78e-83 270
Msa0064820 AT3G45700.1 30.536 560 355 12 26 580 15 545 2.62e-82 268
Msa0064820 AT1G69860.1 33.149 543 339 8 31 564 22 549 3.62e-82 268
Msa0064820 AT3G45710.1 30.674 564 355 11 27 579 21 559 5.33e-82 268
Msa0064820 AT3G45680.1 31.053 570 354 13 6 564 1 542 1.22e-81 267
Msa0064820 AT3G45720.1 32.397 534 321 14 49 570 41 546 1.42e-81 266
Msa0064820 AT3G25280.1 31.330 549 335 9 17 561 11 521 2.73e-80 262
Msa0064820 AT3G45660.1 30.871 528 331 10 46 564 40 542 9.52e-79 259
Msa0064820 AT3G45660.3 30.871 528 331 10 46 564 40 542 9.52e-79 259
Msa0064820 AT3G45660.2 30.682 528 332 10 46 564 61 563 1.59e-78 259
Msa0064820 AT3G45650.2 28.430 605 375 9 6 576 1 581 3.62e-78 258
Msa0064820 AT3G45690.1 29.151 542 322 12 26 564 17 499 2.14e-69 233
Msa0064820 AT5G11570.1 26.993 552 323 14 13 561 2 476 1.98e-54 192
Msa0064820 AT2G38100.2 25.287 522 336 12 55 561 2 484 6.59e-39 150
Msa0064820 AT2G38100.1 25.287 522 336 12 55 561 18 500 1.26e-38 149
Msa0064820 AT2G38100.3 25.287 522 336 12 55 561 24 506 1.80e-38 149

Find 129 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAGCTCTTCATGCTTTC+TGG 0.052596 1_2:-26158747 None:intergenic
TCAAGTTCATATAGTTCTTT+AGG 0.172531 1_2:-26156911 None:intergenic
ACTCCAAGAGATTAGTTTAT+TGG 0.175091 1_2:+26159062 Msa0064820:exon
ACGCCTATCTTGGCCGTTAT+TGG 0.208665 1_2:+26155917 Msa0064820:CDS
TTTGAGAGAATGGCTTATTA+TGG 0.210968 1_2:+26155766 Msa0064820:CDS
GATGGAACTGTTGATCTTAA+AGG 0.218915 1_2:+26153273 Msa0064820:CDS
AGCTTTCCAGCAACCGGTTT+TGG 0.234899 1_2:-26153313 None:intergenic
ATTTGGATCACTCCAATATT+AGG 0.239092 1_2:+26155880 Msa0064820:CDS
GTCTCCTCTACATGTGTAAC+TGG 0.243014 1_2:-26158252 None:intergenic
TTCAACTACTCCATGTTCTT+TGG 0.279867 1_2:-26158610 None:intergenic
CATAATTCATATAGTGATTA+TGG 0.284425 1_2:+26158548 Msa0064820:CDS
AGAACTATATGAACTTGATT+TGG 0.287269 1_2:+26156916 Msa0064820:CDS
GATCATTCTTATCATTTGTT+TGG 0.294014 1_2:-26158274 None:intergenic
GAACATGGAGTAGTTGAAAA+TGG 0.302397 1_2:+26158615 Msa0064820:CDS
GAGATTAGTTTATTGGTTCT+TGG 0.309855 1_2:+26159069 Msa0064820:exon
CTAAAACAGAATTTGCAAAA+AGG 0.325782 1_2:-26156694 None:intergenic
GGATGTTCAGCATCTTTATT+GGG 0.330214 1_2:+26156669 Msa0064820:CDS
AAAATTCCACCAGCAAGTTT+AGG 0.331725 1_2:+26158399 Msa0064820:CDS
AGGGAGTCCCTTCACTAAAA+TGG 0.333057 1_2:+26156835 Msa0064820:CDS
CCAATTGGGTTGGTACCATT+TGG 0.335195 1_2:+26155863 Msa0064820:CDS
TGGATGTTCAGCATCTTTAT+TGG 0.338681 1_2:+26156668 Msa0064820:CDS
CAAGTTCATATAGTTCTTTA+GGG 0.338874 1_2:-26156910 None:intergenic
TGCTTCCTTTATCTACCTAT+TGG 0.339032 1_2:+26155951 Msa0064820:CDS
GCAACATAAGCACCTAATAT+TGG 0.342872 1_2:-26155892 None:intergenic
CAACTTTCACTGAAAGATAT+AGG 0.345759 1_2:+26158577 Msa0064820:CDS
TTGAGAGAATGGCTTATTAT+GGG 0.354991 1_2:+26155767 Msa0064820:CDS
CTTCTACCAATGTCACCAAT+TGG 0.359761 1_2:+26155848 Msa0064820:CDS
TATGTTGCTGACGCCTATCT+TGG 0.362449 1_2:+26155907 Msa0064820:CDS
TCAAATCCAAAACCGGTTGC+TGG 0.378393 1_2:+26153307 Msa0064820:CDS
ATAAACTCTCATTCTTCAAT+TGG 0.378779 1_2:+26156645 Msa0064820:CDS
AAAGCTTGTTCCTTCTTTGT+TGG 0.383274 1_2:+26153330 Msa0064820:CDS
TTGGCTTGGGACAACTAGTT+AGG 0.383973 1_2:+26153147 Msa0064820:five_prime_UTR
GGTTATGCACTTCCAACTCT+TGG 0.392524 1_2:+26156749 Msa0064820:CDS
GATAATGTGGGTTGGACTCT+TGG 0.393984 1_2:+26156728 Msa0064820:CDS
TCTTTAGGGTCACTAGGAAT+AGG 0.396153 1_2:-26156896 None:intergenic
ACATACCAATAGGTAGATAA+AGG 0.397338 1_2:-26155956 None:intergenic
AAACTGAGTGCAACTTGGCT+TGG 0.402406 1_2:+26153133 Msa0064820:five_prime_UTR
ATTAATGTAGTAGCCATGAT+TGG 0.405581 1_2:-26158297 None:intergenic
AGATTAGTTTATTGGTTCTT+GGG 0.414050 1_2:+26159070 Msa0064820:exon
AACTGAGTGCAACTTGGCTT+GGG 0.414141 1_2:+26153134 Msa0064820:five_prime_UTR
ATGGAACTGTTGATCTTAAA+GGG 0.414186 1_2:+26153274 Msa0064820:CDS
GCACCAATGGTGGAAATGTT+AGG 0.424088 1_2:-26156584 None:intergenic
TTCCTATGCCCATCCTTTGA+AGG 0.429082 1_2:-26158524 None:intergenic
ATTTGAGCAATCATTGTACT+AGG 0.430351 1_2:-26158321 None:intergenic
GGAACAAGCTTTCCAGCAAC+CGG 0.436196 1_2:-26153319 None:intergenic
GAACCAATAAACTAATCTCT+TGG 0.436276 1_2:-26159065 None:intergenic
TTACAGCTAGTAGTGTTCTA+TGG 0.437692 1_2:+26156521 Msa0064820:CDS
TTCTACCAATGTCACCAATT+GGG 0.441799 1_2:+26155849 Msa0064820:CDS
AACTCTCATTCTTCAATTGG+TGG 0.444499 1_2:+26156648 Msa0064820:CDS
GGTCCAATAACGGCCAAGAT+AGG 0.451171 1_2:-26155920 None:intergenic
GTATGAGGTATTTGAGAGAA+TGG 0.453573 1_2:+26155756 Msa0064820:CDS
ACCACCTGAGTGTCATGAAA+TGG 0.453752 1_2:+26156469 Msa0064820:CDS
TCCAGAAAGCATGAAGAGCT+TGG 0.454099 1_2:+26158746 Msa0064820:CDS
TTGTGGCTGCTATGAAGAAA+TGG 0.454963 1_2:+26156867 Msa0064820:CDS
CTTCAAAACTGAGTGCAACT+TGG 0.467343 1_2:+26153128 None:intergenic
CCAAATGGTACCAACCCAAT+TGG 0.470302 1_2:-26155863 None:intergenic
CCTATTCTCAAATCCAAAAC+CGG 0.472178 1_2:+26153300 Msa0064820:CDS
AGTGCTTGCAGAAGAATTGA+AGG 0.472723 1_2:+26159010 Msa0064820:CDS
TGAAGGAGAGTAATTCCTCT+AGG 0.480380 1_2:-26158507 None:intergenic
TACACTCTAGCAGTAGGAAC+AGG 0.482514 1_2:+26156551 Msa0064820:CDS
TATAGACATAAAGTACCTAC+AGG 0.484411 1_2:+26156815 Msa0064820:CDS
CCAGAAAGCATGAAGAGCTT+GGG 0.487543 1_2:+26158747 Msa0064820:CDS
TCAATGACTAGCTTAGGCAT+TGG 0.491759 1_2:+26158780 Msa0064820:CDS
TTGGAAGAGTATGCAAAGAA+AGG 0.494172 1_2:+26156935 Msa0064820:CDS
ACAAATGTACCTAAACTTGC+TGG 0.498006 1_2:-26158408 None:intergenic
ACAACACTTGATAGAGGCAT+TGG 0.500358 1_2:+26158369 Msa0064820:CDS
GATAAGAATGATCCCAATCA+TGG 0.502771 1_2:+26158284 Msa0064820:CDS
AGTCTATATACAAGATAATG+TGG 0.504069 1_2:+26156715 Msa0064820:CDS
CTGAGGAACATGGTCACAAA+GGG 0.505036 1_2:+26158847 Msa0064820:CDS
AGTAAAATGAATATGCTCAA+TGG 0.506359 1_2:-26158648 None:intergenic
ATCAAATTGATCAGCACCAA+TGG 0.509830 1_2:-26156597 None:intergenic
TTGTAAAGATTATGCAGAGA+TGG 0.513097 1_2:+26158475 Msa0064820:CDS
GGTTAACATGGAAGAGGGAA+GGG 0.517761 1_2:+26153230 Msa0064820:exon
GAAGGAGAGTAATTCCTCTA+GGG 0.517835 1_2:-26158506 None:intergenic
AAGCCTAACATTTCCACCAT+TGG 0.518336 1_2:+26156581 Msa0064820:CDS
TATAGTTCTTTAGGGTCACT+AGG 0.526463 1_2:-26156902 None:intergenic
TCTTATTCAATGACTAGCTT+AGG 0.530851 1_2:+26158774 Msa0064820:CDS
CTTATACCTCAATGTGGGAG+TGG 0.531336 1_2:-26156975 None:intergenic
AATTACTCTCCTTCAAAGGA+TGG 0.536918 1_2:+26158515 Msa0064820:CDS
TCCCTTCACTAAAATGGCTA+AGG 0.542023 1_2:+26156841 Msa0064820:CDS
TTAATGTAGTAGCCATGATT+GGG 0.543126 1_2:-26158296 None:intergenic
CTTAGTGTAGCCAAAGAACA+TGG 0.548011 1_2:+26158600 Msa0064820:CDS
GGTACTTTATGTCTATAGAA+TGG 0.550764 1_2:-26156809 None:intergenic
AAATGGCATACCAACAAAGA+AGG 0.555354 1_2:-26153340 None:intergenic
CAACACTTGATAGAGGCATT+GGG 0.555650 1_2:+26158370 Msa0064820:CDS
TTGATTCCACTCCCACATTG+AGG 0.555903 1_2:+26156969 Msa0064820:CDS
TTAATAAAGAAGCTTCATCA+AGG 0.556770 1_2:+26155814 Msa0064820:CDS
GTGAGTGAGTTCACACAAGA+TGG 0.557751 1_2:+26153255 Msa0064820:CDS
GATATTGCAAGTCCAAGAGT+TGG 0.562877 1_2:-26156761 None:intergenic
AAGACTAATTCAAGTACTAG+TGG 0.564192 1_2:+26158216 Msa0064820:CDS
ACTAATCTCTTGGAGTCACT+TGG 0.564581 1_2:-26159055 None:intergenic
AGGTTAACATGGAAGAGGGA+AGG 0.565286 1_2:+26153229 Msa0064820:exon
ACCAATGTCACCAATTGGGT+TGG 0.565849 1_2:+26155853 Msa0064820:CDS
TCTTGACACATGCCTTGTTG+AGG 0.569147 1_2:-26158197 None:intergenic
ACCAACCCAATTGGTGACAT+TGG 0.570728 1_2:-26155854 None:intergenic
CTCCTTCAAAGGATGGGCAT+AGG 0.570734 1_2:+26158522 Msa0064820:CDS
TAATATTGGAGTGATCCAAA+TGG 0.571433 1_2:-26155878 None:intergenic
CAGTAACAAAGGTCCAATAA+CGG 0.571576 1_2:-26155930 None:intergenic
GAGGAATTACTCTCCTTCAA+AGG 0.576375 1_2:+26158511 Msa0064820:CDS
AATGTACCTAAACTTGCTGG+TGG 0.578804 1_2:-26158405 None:intergenic
ATATACAAGATAATGTGGGT+TGG 0.583558 1_2:+26156720 Msa0064820:CDS
AGGAACATGGTCACAAAGGG+TGG 0.587585 1_2:+26158850 Msa0064820:CDS
TCTCCTCTACATGTGTAACT+GGG 0.590294 1_2:-26158251 None:intergenic
ATTACTCTCCTTCAAAGGAT+GGG 0.590754 1_2:+26158516 Msa0064820:CDS
TTCAGAACAAAACTCAGACA+TGG 0.594960 1_2:+26159133 Msa0064820:three_prime_UTR
CAAGGAACAACACTTGATAG+AGG 0.596087 1_2:+26158363 Msa0064820:CDS
GTCTATATACAAGATAATGT+GGG 0.599062 1_2:+26156716 Msa0064820:CDS
AATACACTATTTGTGAAGCA+AGG 0.599414 1_2:+26158345 Msa0064820:CDS
AAATTGATCAGCACCAATGG+TGG 0.600096 1_2:-26156594 None:intergenic
AATGGATGTTACAAAATGCA+AGG 0.601334 1_2:+26156487 Msa0064820:CDS
GATAAAGGAAGCAGTAACAA+AGG 0.605026 1_2:-26155941 None:intergenic
CATGGAGTAGTTGAAAATGG+AGG 0.610149 1_2:+26158618 Msa0064820:CDS
TAAAATGGCTAAGGTCATTG+TGG 0.611474 1_2:+26156850 Msa0064820:CDS
ACTCTAGCAGTAGGAACAGG+TGG 0.614419 1_2:+26156554 Msa0064820:CDS
GCACTCTACACTCTAGCAGT+AGG 0.615235 1_2:+26156545 Msa0064820:CDS
TCCATTTCATGACACTCAGG+TGG 0.620788 1_2:-26156470 None:intergenic
AATCAAGATGAGAAGCATTG+AGG 0.621145 1_2:-26158884 None:intergenic
GAACACTACTAGCTGTAATG+TGG 0.621214 1_2:-26156516 None:intergenic
ACTGAGGAACATGGTCACAA+AGG 0.621642 1_2:+26158846 Msa0064820:CDS
ATGCCCAGTTACACATGTAG+AGG 0.628339 1_2:+26158248 Msa0064820:CDS
TCACACATCACTGAGGAACA+TGG 0.632557 1_2:+26158837 Msa0064820:CDS
ACATCCATTTCATGACACTC+AGG 0.634209 1_2:-26156473 None:intergenic
TTAGTGAAGGGACTCCCTGT+AGG 0.634253 1_2:-26156830 None:intergenic
TGGAACTTATACCTCAATGT+GGG 0.647517 1_2:-26156980 None:intergenic
ATGGAACTTATACCTCAATG+TGG 0.655784 1_2:-26156981 None:intergenic
ACTAATTCAAGTACTAGTGG+AGG 0.670493 1_2:+26158219 Msa0064820:CDS
TGTATGCAGATTCCTCAACA+AGG 0.703011 1_2:+26158185 Msa0064820:intron
ATAGACATAAAGTACCTACA+GGG 0.722644 1_2:+26156816 Msa0064820:CDS
AACAGTTTCACACATCACTG+AGG 0.750967 1_2:+26158830 Msa0064820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATGTTGTTAAAAA+TGG + chr1_2:26153403-26153422 Msa0064820:intron 10.0%
!!! TTGTATTTTTTTTTTTTGAA+AGG + chr1_2:26154698-26154717 Msa0064820:intron 10.0%
!!! TAAACATTTTAATTTTAAGT+AGG - chr1_2:26155109-26155128 None:intergenic 10.0%
!! AGAAAATTCTAAATATTTAT+AGG + chr1_2:26156320-26156339 Msa0064820:intron 10.0%
!!! AATATCTATCATAATATTTT+TGG + chr1_2:26156778-26156797 Msa0064820:CDS 10.0%
!!! TGAAAATGAAATTTTAATAT+TGG + chr1_2:26157641-26157660 Msa0064820:intron 10.0%
!!! TATTACTTATTTTTTAATTG+TGG + chr1_2:26157928-26157947 Msa0064820:intron 10.0%
!! ACAAAAAAAAAAAAAAATTG+AGG - chr1_2:26158020-26158039 None:intergenic 10.0%
!!! TCAATTTTTTTTTTTTTTTG+TGG + chr1_2:26158019-26158038 Msa0064820:intron 10.0%
!! AAAATTGTTAAAAATGTAAG+TGG + chr1_2:26153757-26153776 Msa0064820:intron 15.0%
!!! TTTTTGTTTTTTTGATAGTA+TGG - chr1_2:26153899-26153918 None:intergenic 15.0%
!! TAAAAAGAACATTTATAATG+AGG + chr1_2:26154228-26154247 Msa0064820:intron 15.0%
!! AAAAAGAACATTTATAATGA+GGG + chr1_2:26154229-26154248 Msa0064820:intron 15.0%
!!! AATAAAAGCTTTTCATATTA+AGG + chr1_2:26154314-26154333 Msa0064820:intron 15.0%
!! TATTATTATAGTGGTATATT+AGG - chr1_2:26154558-26154577 None:intergenic 15.0%
!! TTAAGGAATTATTATTATAG+TGG - chr1_2:26154567-26154586 None:intergenic 15.0%
!!! ATTAGTTTTTTTTAATGAAG+AGG + chr1_2:26154797-26154816 Msa0064820:intron 15.0%
!!! TTTTTTTTACTTAAATCTCA+CGG + chr1_2:26154887-26154906 Msa0064820:intron 15.0%
!! AGAAAATTTGAGTATTTAAT+GGG - chr1_2:26155145-26155164 None:intergenic 15.0%
!! CAAAAAAAATCAATAATTGT+TGG - chr1_2:26155310-26155329 None:intergenic 15.0%
!!! TTTTTACAAAAAAGAATAAC+TGG - chr1_2:26155341-26155360 None:intergenic 15.0%
!! TCAGTATTATAAGTATATTT+AGG + chr1_2:26155479-26155498 Msa0064820:intron 15.0%
!!! GTATGATTTTATTTTTTAGA+GGG - chr1_2:26156072-26156091 None:intergenic 15.0%
!!! AGTATGATTTTATTTTTTAG+AGG - chr1_2:26156073-26156092 None:intergenic 15.0%
!!! AAATGTGATTTTATTTTGTA+AGG + chr1_2:26156291-26156310 Msa0064820:intron 15.0%
!! ATGTATTTGTGAAAAAAAAT+AGG - chr1_2:26157020-26157039 None:intergenic 15.0%
!!! TTATTATTTTTCTTAAGTTG+CGG - chr1_2:26157390-26157409 None:intergenic 15.0%
!! AAATACTCATAAAAACTTAA+TGG + chr1_2:26157435-26157454 Msa0064820:intron 15.0%
!! AATTAGAGTTTCAATACAAT+TGG + chr1_2:26153493-26153512 Msa0064820:intron 20.0%
!! ATTAGAGTTTCAATACAATT+GGG + chr1_2:26153494-26153513 Msa0064820:intron 20.0%
!! AACAAAAGTAGAACTAAATA+AGG + chr1_2:26153619-26153638 Msa0064820:intron 20.0%
!!! TACTAATGAAAACCAATTTT+TGG - chr1_2:26153865-26153884 None:intergenic 20.0%
!!! TACAATTTTAAGAAAGTCAT+TGG + chr1_2:26154004-26154023 Msa0064820:intron 20.0%
!! TAAATAAGTGTGTATATTTG+TGG + chr1_2:26154122-26154141 Msa0064820:intron 20.0%
!! AAAAAAAAATGTCACTATTG+TGG - chr1_2:26154875-26154894 None:intergenic 20.0%
!!! TTTTTTTACTTAAATCTCAC+GGG + chr1_2:26154888-26154907 Msa0064820:intron 20.0%
!! GAGAAAATTTGAGTATTTAA+TGG - chr1_2:26155146-26155165 None:intergenic 20.0%
!! ATGTATGTAGATTCAATAAT+TGG - chr1_2:26155370-26155389 None:intergenic 20.0%
!! TGATGTTACATCATTAAAAA+TGG + chr1_2:26155625-26155644 Msa0064820:intron 20.0%
!! AATATAACAAGTTGTGAAAA+AGG + chr1_2:26155658-26155677 Msa0064820:intron 20.0%
!! ATAAATTAAGACATACCAAT+AGG - chr1_2:26155969-26155988 None:intergenic 20.0%
!! TTTATTATCTAGCGTTAAAT+AGG + chr1_2:26155984-26156003 Msa0064820:intron 20.0%
!! TTATTATCTAGCGTTAAATA+GGG + chr1_2:26155985-26156004 Msa0064820:intron 20.0%
!! TTACGAACTAAAAATACATA+CGG - chr1_2:26156148-26156167 None:intergenic 20.0%
!!! TTTGACAGAAATTTTTTACA+AGG - chr1_2:26156225-26156244 None:intergenic 20.0%
!! AAATAGGGTTATATTTGAAA+GGG - chr1_2:26156363-26156382 None:intergenic 20.0%
!! AAAATAGGGTTATATTTGAA+AGG - chr1_2:26156364-26156383 None:intergenic 20.0%
!!! ATATAACCCTATTTTATTGT+TGG + chr1_2:26156369-26156388 Msa0064820:intron 20.0%
!!! TATAACCCTATTTTATTGTT+GGG + chr1_2:26156370-26156389 Msa0064820:intron 20.0%
!! TAAAACAGAATTTGCAAAAA+GGG - chr1_2:26156696-26156715 None:intergenic 20.0%
!! AATAGGTATTAAATCAAACA+TGG - chr1_2:26157003-26157022 None:intergenic 20.0%
!! CATAGAGTGTATTAAAAATA+TGG - chr1_2:26157613-26157632 None:intergenic 20.0%
!! TATAAGTTTAGGAAAATTTG+AGG - chr1_2:26158123-26158142 None:intergenic 20.0%
!! CATAATTCATATAGTGATTA+TGG + chr1_2:26158548-26158567 Msa0064820:CDS 20.0%
!!! TTTGTTCTGAAAAATACATT+TGG - chr1_2:26159124-26159143 None:intergenic 20.0%
!!! GATTTTGTTTTCCCTAAAAA+AGG + chr1_2:26153209-26153228 Msa0064820:five_prime_UTR 25.0%
!!! TTCCATGTTAACCTTTTTTA+GGG - chr1_2:26153223-26153242 None:intergenic 25.0%
! ATGTTTCCTAATAACATTGA+CGG - chr1_2:26153453-26153472 None:intergenic 25.0%
!!! TTCTACTTTTGTTAACTCTA+GGG - chr1_2:26153612-26153631 None:intergenic 25.0%
!! TGAAAACTCAAGTTCAATTT+TGG - chr1_2:26153723-26153742 None:intergenic 25.0%
! TTGTTAAAAATGTAAGTGGA+AGG + chr1_2:26153761-26153780 Msa0064820:intron 25.0%
! TCAATGAAAATGCCAAAAAT+TGG + chr1_2:26153850-26153869 Msa0064820:intron 25.0%
! AAATTGTAAATGATACGCAT+GGG - chr1_2:26153992-26154011 None:intergenic 25.0%
! AAAATTGTAAATGATACGCA+TGG - chr1_2:26153993-26154012 None:intergenic 25.0%
! TAACAACTAGTGAAGTAATT+AGG + chr1_2:26154084-26154103 Msa0064820:intron 25.0%
! TTTATAAAATCCTCACTGTA+GGG - chr1_2:26154183-26154202 None:intergenic 25.0%
! ATTTATAAAATCCTCACTGT+AGG - chr1_2:26154184-26154203 None:intergenic 25.0%
! ATAGATGAGTAAATTCTTGA+TGG + chr1_2:26154474-26154493 Msa0064820:intron 25.0%
! GTATATTAGGAATTCTTTCT+TGG - chr1_2:26154545-26154564 None:intergenic 25.0%
!! TGTGATACTTTTCTTTTGAA+AGG - chr1_2:26154773-26154792 None:intergenic 25.0%
!!! TTTCAAAAGAAAAGTATCAC+AGG + chr1_2:26154772-26154791 Msa0064820:intron 25.0%
!!! TTCAAAAGAAAAGTATCACA+GGG + chr1_2:26154773-26154792 Msa0064820:intron 25.0%
!!! GATGTTTTTATGCTATTGTT+TGG - chr1_2:26154853-26154872 None:intergenic 25.0%
! ACCAACTATCAAATCTTAAA+TGG + chr1_2:26155188-26155207 Msa0064820:intron 25.0%
!! ACCATTTAAGATTTGATAGT+TGG - chr1_2:26155192-26155211 None:intergenic 25.0%
! ATCAAATCTTAAATGGTCAT+TGG + chr1_2:26155195-26155214 Msa0064820:intron 25.0%
! CAAAAAAGAATAACTGGATT+GGG - chr1_2:26155335-26155354 None:intergenic 25.0%
! ACAAAAAAGAATAACTGGAT+TGG - chr1_2:26155336-26155355 None:intergenic 25.0%
!!! TCAACTTTTAGTCGTTTTTT+TGG - chr1_2:26155444-26155463 None:intergenic 25.0%
! ACGATAAAAATGAATCAACA+TGG - chr1_2:26155579-26155598 None:intergenic 25.0%
! TGTTACATCATTAAAAATGG+AGG + chr1_2:26155628-26155647 Msa0064820:intron 25.0%
! CAAAAACCATTAAGTGTTAT+TGG + chr1_2:26155684-26155703 Msa0064820:intron 25.0%
!! TGACAATGAAATGTGTATTT+TGG + chr1_2:26155727-26155746 Msa0064820:intron 25.0%
! TTAATAAAGAAGCTTCATCA+AGG + chr1_2:26155814-26155833 Msa0064820:CDS 25.0%
!! TACATACGGAAAATTTTACA+AGG - chr1_2:26156134-26156153 None:intergenic 25.0%
! ACAAGGACTAAAAATACATA+CGG - chr1_2:26156177-26156196 None:intergenic 25.0%
!! TGTTGAAGGAAAATTTTACA+AGG - chr1_2:26156194-26156213 None:intergenic 25.0%
!! CATTTTCCTTTAGCATTTTA+GGG - chr1_2:26156257-26156276 None:intergenic 25.0%
!! ACATTTTCCTTTAGCATTTT+AGG - chr1_2:26156258-26156277 None:intergenic 25.0%
! GAAAGGGTTAATTAAGTAAA+TGG - chr1_2:26156347-26156366 None:intergenic 25.0%
! ATAAACTCTCATTCTTCAAT+TGG + chr1_2:26156645-26156664 Msa0064820:CDS 25.0%
! CTAAAACAGAATTTGCAAAA+AGG - chr1_2:26156697-26156716 None:intergenic 25.0%
! AGTCTATATACAAGATAATG+TGG + chr1_2:26156715-26156734 Msa0064820:CDS 25.0%
! GTCTATATACAAGATAATGT+GGG + chr1_2:26156716-26156735 Msa0064820:CDS 25.0%
!!! TCTATCATAATATTTTTGGC+AGG + chr1_2:26156782-26156801 Msa0064820:CDS 25.0%
! CAAGTTCATATAGTTCTTTA+GGG - chr1_2:26156913-26156932 None:intergenic 25.0%
! TCAAGTTCATATAGTTCTTT+AGG - chr1_2:26156914-26156933 None:intergenic 25.0%
! AGAACTATATGAACTTGATT+TGG + chr1_2:26156916-26156935 Msa0064820:CDS 25.0%
! ATTCGACTAAGTTTCAATTA+AGG + chr1_2:26157065-26157084 Msa0064820:intron 25.0%
! AAAAGAAAATGCATGTCATT+CGG + chr1_2:26157212-26157231 Msa0064820:intron 25.0%
!!! AAACCAAATGAGATTTTTTG+CGG - chr1_2:26157293-26157312 None:intergenic 25.0%
! TTTAATACACTCTATGTTGT+TGG + chr1_2:26157617-26157636 Msa0064820:intron 25.0%
! TTAATACACTCTATGTTGTT+GGG + chr1_2:26157618-26157637 Msa0064820:intron 25.0%
!! ATAGATGTTATGTTGGTAAA+TGG + chr1_2:26157989-26158008 Msa0064820:intron 25.0%
!!! TTTTTTTTTTTTTGTGGTCG+AGG + chr1_2:26158025-26158044 Msa0064820:intron 25.0%
!! AACAATGAGAGTATAAGTTT+AGG - chr1_2:26158134-26158153 None:intergenic 25.0%
! GATCATTCTTATCATTTGTT+TGG - chr1_2:26158277-26158296 None:intergenic 25.0%
! AGTAAAATGAATATGCTCAA+TGG - chr1_2:26158651-26158670 None:intergenic 25.0%
! TTCCCATAAGTAAAAATTGA+GGG - chr1_2:26158674-26158693 None:intergenic 25.0%
!! TGATTACTACTATGCATTTT+TGG + chr1_2:26158902-26158921 Msa0064820:CDS 25.0%
!!! AGATTAGTTTATTGGTTCTT+GGG + chr1_2:26159070-26159089 Msa0064820:exon 25.0%
TTCCCTAAAAAAGGTTAACA+TGG + chr1_2:26153218-26153237 Msa0064820:exon 30.0%
!!! CTTCCATGTTAACCTTTTTT+AGG - chr1_2:26153224-26153243 None:intergenic 30.0%
AAAAAAGGTTAACATGGAAG+AGG + chr1_2:26153224-26153243 Msa0064820:exon 30.0%
AAAAAGGTTAACATGGAAGA+GGG + chr1_2:26153225-26153244 Msa0064820:exon 30.0%
ATGGAACTGTTGATCTTAAA+GGG + chr1_2:26153274-26153293 Msa0064820:CDS 30.0%
TAAAACCCGTCAATGTTATT+AGG + chr1_2:26153444-26153463 Msa0064820:intron 30.0%
TGTTTCCTAATAACATTGAC+GGG - chr1_2:26153452-26153471 None:intergenic 30.0%
GGGTATATCATAATAGATAG+CGG + chr1_2:26153514-26153533 Msa0064820:intron 30.0%
GGTATATCATAATAGATAGC+GGG + chr1_2:26153515-26153534 Msa0064820:intron 30.0%
!! GTTCTACTTTTGTTAACTCT+AGG - chr1_2:26153613-26153632 None:intergenic 30.0%
TTAAAAATGTAAGTGGAAGG+AGG + chr1_2:26153764-26153783 Msa0064820:intron 30.0%
ATAATGTATCTTGCAAACTG+TGG - chr1_2:26153963-26153982 None:intergenic 30.0%
AAGAACATTTATAATGAGGG+AGG + chr1_2:26154232-26154251 Msa0064820:intron 30.0%
AGAACATTTATAATGAGGGA+GGG + chr1_2:26154233-26154252 Msa0064820:intron 30.0%
CTCATAGCATGAATACATTA+AGG + chr1_2:26154361-26154380 Msa0064820:intron 30.0%
GTATGTATAATGAGATATCC+AGG - chr1_2:26154388-26154407 None:intergenic 30.0%
TCATCTATTAATTTCGAACG+AGG - chr1_2:26154462-26154481 None:intergenic 30.0%
ATTCCTTAATCTTGTTCATC+TGG + chr1_2:26154578-26154597 Msa0064820:intron 30.0%
!!! TTTTTTAATGAAGAGGTCCA+TGG + chr1_2:26154804-26154823 Msa0064820:intron 30.0%
TTTGAGTATTTAATGGGACA+AGG - chr1_2:26155139-26155158 None:intergenic 30.0%
! CCTTATGTGGTACTTTTATT+CGG - chr1_2:26155168-26155187 None:intergenic 30.0%
GTGTAATTGTTATAGATTGG+CGG + chr1_2:26155246-26155265 Msa0064820:intron 30.0%
TTTGAGAGAATGGCTTATTA+TGG + chr1_2:26155766-26155785 Msa0064820:CDS 30.0%
TTGAGAGAATGGCTTATTAT+GGG + chr1_2:26155767-26155786 Msa0064820:CDS 30.0%
TAATATTGGAGTGATCCAAA+TGG - chr1_2:26155881-26155900 None:intergenic 30.0%
ATTTGGATCACTCCAATATT+AGG + chr1_2:26155880-26155899 Msa0064820:CDS 30.0%
ACATACCAATAGGTAGATAA+AGG - chr1_2:26155959-26155978 None:intergenic 30.0%
ACAAGGACTAAAAATGTTGA+AGG - chr1_2:26156208-26156227 None:intergenic 30.0%
! TTTTGTCCCTAAAATGCTAA+AGG + chr1_2:26156248-26156267 Msa0064820:intron 30.0%
TGCTAAAGGAAAATGTTACA+TGG + chr1_2:26156262-26156281 Msa0064820:intron 30.0%
ATTGGCCCAACAATAAAATA+GGG - chr1_2:26156378-26156397 None:intergenic 30.0%
ATTCAAATGTGACCTCAAAT+TGG + chr1_2:26156399-26156418 Msa0064820:intron 30.0%
AATGGATGTTACAAAATGCA+AGG + chr1_2:26156487-26156506 Msa0064820:CDS 30.0%
ATATACAAGATAATGTGGGT+TGG + chr1_2:26156720-26156739 Msa0064820:CDS 30.0%
GGTACTTTATGTCTATAGAA+TGG - chr1_2:26156812-26156831 None:intergenic 30.0%
! TATAGACATAAAGTACCTAC+AGG + chr1_2:26156815-26156834 Msa0064820:CDS 30.0%
! ATAGACATAAAGTACCTACA+GGG + chr1_2:26156816-26156835 Msa0064820:CDS 30.0%
CAATTAAGGACAAATCATTC+AGG + chr1_2:26157079-26157098 Msa0064820:intron 30.0%
TATTAAACCTCCAATTCCTA+GGG - chr1_2:26157193-26157212 None:intergenic 30.0%
TTATTAAACCTCCAATTCCT+AGG - chr1_2:26157194-26157213 None:intergenic 30.0%
!!! ATTTTTTGCGGTTTCGTTTT+GGG - chr1_2:26157281-26157300 None:intergenic 30.0%
AAACCGCAAAAAATCTCATT+TGG + chr1_2:26157287-26157306 Msa0064820:intron 30.0%
GCAAAAAATCTCATTTGGTT+TGG + chr1_2:26157292-26157311 Msa0064820:intron 30.0%
!!! CAATTTTTTACTCAACCACA+TGG + chr1_2:26157327-26157346 Msa0064820:intron 30.0%
!! ATTTTTCTTAAGTTGCGGTT+TGG - chr1_2:26157385-26157404 None:intergenic 30.0%
TTTGTCTACGTGACATATAT+AGG - chr1_2:26157418-26157437 None:intergenic 30.0%
! AGATAAAAAAGCATGTGGTT+CGG - chr1_2:26157832-26157851 None:intergenic 30.0%
!!! TGCTTTTTTATCTCACGATT+AGG + chr1_2:26157839-26157858 Msa0064820:intron 30.0%
CAACTAGATAGATGTTATGT+TGG + chr1_2:26157982-26158001 Msa0064820:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr1_2:26158064-26158083 None:intergenic 30.0%
AAGACTAATTCAAGTACTAG+TGG + chr1_2:26158216-26158235 Msa0064820:CDS 30.0%
TTAATGTAGTAGCCATGATT+GGG - chr1_2:26158299-26158318 None:intergenic 30.0%
ATTAATGTAGTAGCCATGAT+TGG - chr1_2:26158300-26158319 None:intergenic 30.0%
ATTTGAGCAATCATTGTACT+AGG - chr1_2:26158324-26158343 None:intergenic 30.0%
AATACACTATTTGTGAAGCA+AGG + chr1_2:26158345-26158364 Msa0064820:CDS 30.0%
TTGTAAAGATTATGCAGAGA+TGG + chr1_2:26158475-26158494 Msa0064820:CDS 30.0%
CAACTTTCACTGAAAGATAT+AGG + chr1_2:26158577-26158596 Msa0064820:CDS 30.0%
! ACTCCCTCAATTTTTACTTA+TGG + chr1_2:26158668-26158687 Msa0064820:CDS 30.0%
! CTCCCTCAATTTTTACTTAT+GGG + chr1_2:26158669-26158688 Msa0064820:CDS 30.0%
GTTCCCATAAGTAAAAATTG+AGG - chr1_2:26158675-26158694 None:intergenic 30.0%
!! TCTTATTCAATGACTAGCTT+AGG + chr1_2:26158774-26158793 Msa0064820:CDS 30.0%
!! ACTCCAAGAGATTAGTTTAT+TGG + chr1_2:26159062-26159081 Msa0064820:exon 30.0%
GAACCAATAAACTAATCTCT+TGG - chr1_2:26159068-26159087 None:intergenic 30.0%
!! GAGATTAGTTTATTGGTTCT+TGG + chr1_2:26159069-26159088 Msa0064820:exon 30.0%
GATGGAACTGTTGATCTTAA+AGG + chr1_2:26153273-26153292 Msa0064820:CDS 35.0%
CCTATTCTCAAATCCAAAAC+CGG + chr1_2:26153300-26153319 Msa0064820:CDS 35.0%
! AAAGCTTGTTCCTTCTTTGT+TGG + chr1_2:26153330-26153349 Msa0064820:CDS 35.0%
AAATGGCATACCAACAAAGA+AGG - chr1_2:26153343-26153362 None:intergenic 35.0%
!! TACTTTTGTTAACTCTAGGG+TGG - chr1_2:26153609-26153628 None:intergenic 35.0%
! AGAATGGCTTGTGGTATATA+AGG + chr1_2:26153793-26153812 Msa0064820:intron 35.0%
GGTATATAAGGATGGTCTAT+TGG + chr1_2:26153805-26153824 Msa0064820:intron 35.0%
! AAGAAAGTCATTGGTTGTGT+TGG + chr1_2:26154013-26154032 Msa0064820:intron 35.0%
TAAGTATATACCCTACAGTG+AGG + chr1_2:26154170-26154189 Msa0064820:intron 35.0%
GGGTACTACTCAAAATACTT+CGG + chr1_2:26154253-26154272 Msa0064820:intron 35.0%
GGTACTACTCAAAATACTTC+GGG + chr1_2:26154254-26154273 Msa0064820:intron 35.0%
TGAGTAAATTCTTGATGGAG+AGG + chr1_2:26154479-26154498 Msa0064820:intron 35.0%
TAAATTCTTGATGGAGAGGT+AGG + chr1_2:26154483-26154502 Msa0064820:intron 35.0%
AAGCCAGATGAACAAGATTA+AGG - chr1_2:26154584-26154603 None:intergenic 35.0%
!!! TTTTTTGAAAGGAGTACCCT+AGG + chr1_2:26154709-26154728 Msa0064820:intron 35.0%
! ATGGATCACCTTCTTTTTGA+AGG + chr1_2:26154741-26154760 Msa0064820:intron 35.0%
! TGGATCACCTTCTTTTTGAA+GGG + chr1_2:26154742-26154761 Msa0064820:intron 35.0%
!! CCGAATAAAAGTACCACATA+AGG + chr1_2:26155165-26155184 Msa0064820:intron 35.0%
! TTTGATAGTTGGTCCTTATG+TGG - chr1_2:26155181-26155200 None:intergenic 35.0%
! TCATTGGTTAGATACCCATT+GGG + chr1_2:26155211-26155230 Msa0064820:intron 35.0%
GGGGTGTAATTGTTATAGAT+TGG + chr1_2:26155243-26155262 Msa0064820:intron 35.0%
TCCAAAAGTCGTCTTAGATT+TGG + chr1_2:26155544-26155563 Msa0064820:intron 35.0%
!! ACCAAATCTAAGACGACTTT+TGG - chr1_2:26155548-26155567 None:intergenic 35.0%
TGTGGTCCAATAACACTTAA+TGG - chr1_2:26155693-26155712 None:intergenic 35.0%
GTCAACGATATGATTCAATG+TGG - chr1_2:26155711-26155730 None:intergenic 35.0%
! GTATGAGGTATTTGAGAGAA+TGG + chr1_2:26155756-26155775 Msa0064820:CDS 35.0%
TTCTACCAATGTCACCAATT+GGG + chr1_2:26155849-26155868 Msa0064820:CDS 35.0%
GCAACATAAGCACCTAATAT+TGG - chr1_2:26155895-26155914 None:intergenic 35.0%
CAGTAACAAAGGTCCAATAA+CGG - chr1_2:26155933-26155952 None:intergenic 35.0%
GATAAAGGAAGCAGTAACAA+AGG - chr1_2:26155944-26155963 None:intergenic 35.0%
TGCTTCCTTTATCTACCTAT+TGG + chr1_2:26155951-26155970 Msa0064820:CDS 35.0%
CATTGGCCCAACAATAAAAT+AGG - chr1_2:26156379-26156398 None:intergenic 35.0%
TGAGGTCACATTTGAATCAT+TGG - chr1_2:26156396-26156415 None:intergenic 35.0%
TTACAGCTAGTAGTGTTCTA+TGG + chr1_2:26156521-26156540 Msa0064820:CDS 35.0%
ATCAAATTGATCAGCACCAA+TGG - chr1_2:26156600-26156619 None:intergenic 35.0%
AACTCTCATTCTTCAATTGG+TGG + chr1_2:26156648-26156667 Msa0064820:CDS 35.0%
TGGATGTTCAGCATCTTTAT+TGG + chr1_2:26156668-26156687 Msa0064820:CDS 35.0%
GGATGTTCAGCATCTTTATT+GGG + chr1_2:26156669-26156688 Msa0064820:CDS 35.0%
!! ACCTTAGCCATTTTAGTGAA+GGG - chr1_2:26156845-26156864 None:intergenic 35.0%
TAAAATGGCTAAGGTCATTG+TGG + chr1_2:26156850-26156869 Msa0064820:CDS 35.0%
!! TATAGTTCTTTAGGGTCACT+AGG - chr1_2:26156905-26156924 None:intergenic 35.0%
! TTGGAAGAGTATGCAAAGAA+AGG + chr1_2:26156935-26156954 Msa0064820:CDS 35.0%
TGGAACTTATACCTCAATGT+GGG - chr1_2:26156983-26157002 None:intergenic 35.0%
ATGGAACTTATACCTCAATG+TGG - chr1_2:26156984-26157003 None:intergenic 35.0%
TGAAACTTAGTCGAATCACT+TGG - chr1_2:26157061-26157080 None:intergenic 35.0%
GAAAGAGGACTCTAGTAAAT+TGG - chr1_2:26157171-26157190 None:intergenic 35.0%
TATGTCTTGTGTTGTATGCT+AGG + chr1_2:26157235-26157254 Msa0064820:intron 35.0%
ATGTCTTGTGTTGTATGCTA+GGG + chr1_2:26157236-26157255 Msa0064820:intron 35.0%
!!! GGTTTCGTTTTGGGTTTTTT+CGG - chr1_2:26157272-26157291 None:intergenic 35.0%
!!! GATTTTTTGCGGTTTCGTTT+TGG - chr1_2:26157282-26157301 None:intergenic 35.0%
AAATCGCAAACAAAACCATG+TGG - chr1_2:26157345-26157364 None:intergenic 35.0%
CAAATCAATGCAACTTGGAT+TGG - chr1_2:26157774-26157793 None:intergenic 35.0%
!! CAATCCAAGTTGCATTGATT+TGG + chr1_2:26157772-26157791 Msa0064820:intron 35.0%
CAAACCAAATCAATGCAACT+TGG - chr1_2:26157779-26157798 None:intergenic 35.0%
!! CAAGTTGCATTGATTTGGTT+TGG + chr1_2:26157777-26157796 Msa0064820:intron 35.0%
! TCGTGAGATAAAAAAGCATG+TGG - chr1_2:26157837-26157856 None:intergenic 35.0%
TGGACTTATCATGTCAAGTT+TGG + chr1_2:26157948-26157967 Msa0064820:intron 35.0%
ACTAATTCAAGTACTAGTGG+AGG + chr1_2:26158219-26158238 Msa0064820:CDS 35.0%
GATAAGAATGATCCCAATCA+TGG + chr1_2:26158284-26158303 Msa0064820:CDS 35.0%
AAAATTCCACCAGCAAGTTT+AGG + chr1_2:26158399-26158418 Msa0064820:CDS 35.0%
ACAAATGTACCTAAACTTGC+TGG - chr1_2:26158411-26158430 None:intergenic 35.0%
AATTACTCTCCTTCAAAGGA+TGG + chr1_2:26158515-26158534 Msa0064820:CDS 35.0%
ATTACTCTCCTTCAAAGGAT+GGG + chr1_2:26158516-26158535 Msa0064820:CDS 35.0%
TTCAACTACTCCATGTTCTT+TGG - chr1_2:26158613-26158632 None:intergenic 35.0%
GAACATGGAGTAGTTGAAAA+TGG + chr1_2:26158615-26158634 Msa0064820:CDS 35.0%
!! AACAGCTGATGCATTTTTAG+AGG + chr1_2:26158692-26158711 Msa0064820:CDS 35.0%
!! AATCAAGATGAGAAGCATTG+AGG - chr1_2:26158887-26158906 None:intergenic 35.0%
! TTCTTCTGCAAGCACTTTTA+TGG - chr1_2:26159006-26159025 None:intergenic 35.0%
TTCAGAACAAAACTCAGACA+TGG + chr1_2:26159133-26159152 Msa0064820:three_prime_UTR 35.0%
!!! CCGGTTTTGGATTTGAGAAT+AGG - chr1_2:26153303-26153322 None:intergenic 40.0%
GATGAGAGAGCAAGAGAAAA+TGG - chr1_2:26153360-26153379 None:intergenic 40.0%
TTCTCTTGCTCTCTCATCTA+TGG + chr1_2:26153362-26153381 Msa0064820:intron 40.0%
TTTGTTAGCCGACAAGCTAA+CGG - chr1_2:26153584-26153603 None:intergenic 40.0%
GGTTGCATTATCTCTTCTTG+TGG - chr1_2:26153647-26153666 None:intergenic 40.0%
! TGGCTTGTGGTATATAAGGA+TGG + chr1_2:26153797-26153816 Msa0064820:intron 40.0%
GCATGAATACATTAAGGACC+TGG + chr1_2:26154367-26154386 Msa0064820:intron 40.0%
!! GGATCACCTTCTTTTTGAAG+GGG + chr1_2:26154743-26154762 Msa0064820:intron 40.0%
AATTCAATCCGTCAAACCCT+AGG + chr1_2:26154987-26155006 Msa0064820:intron 40.0%
GAACTTTGTGTGAGATCCTA+GGG - chr1_2:26155006-26155025 None:intergenic 40.0%
AGAACTTTGTGTGAGATCCT+AGG - chr1_2:26155007-26155026 None:intergenic 40.0%
! GTCATTGGTTAGATACCCAT+TGG + chr1_2:26155210-26155229 Msa0064820:intron 40.0%
!!! CGACTTTTGGAACAAGAATG+TGG - chr1_2:26155535-26155554 None:intergenic 40.0%
!!! GTATTTTGGTGCAGTGTATG+AGG + chr1_2:26155741-26155760 Msa0064820:intron 40.0%
CTTCTACCAATGTCACCAAT+TGG + chr1_2:26155848-26155867 Msa0064820:CDS 40.0%
AAATGTGACCTCAAATTGGC+AGG + chr1_2:26156403-26156422 Msa0064820:intron 40.0%
AATGTGACCTCAAATTGGCA+GGG + chr1_2:26156404-26156423 Msa0064820:intron 40.0%
ACATCCATTTCATGACACTC+AGG - chr1_2:26156476-26156495 None:intergenic 40.0%
GAACACTACTAGCTGTAATG+TGG - chr1_2:26156519-26156538 None:intergenic 40.0%
AAGCCTAACATTTCCACCAT+TGG + chr1_2:26156581-26156600 Msa0064820:CDS 40.0%
AAATTGATCAGCACCAATGG+TGG - chr1_2:26156597-26156616 None:intergenic 40.0%
GATATTGCAAGTCCAAGAGT+TGG - chr1_2:26156764-26156783 None:intergenic 40.0%
TCCCTTCACTAAAATGGCTA+AGG + chr1_2:26156841-26156860 Msa0064820:CDS 40.0%
!! GACCTTAGCCATTTTAGTGA+AGG - chr1_2:26156846-26156865 None:intergenic 40.0%
TTGTGGCTGCTATGAAGAAA+TGG + chr1_2:26156867-26156886 Msa0064820:CDS 40.0%
!! TCTTTAGGGTCACTAGGAAT+AGG - chr1_2:26156899-26156918 None:intergenic 40.0%
! AGGTAAGTAAAGGCTGGTTA+AGG - chr1_2:26157136-26157155 None:intergenic 40.0%
CTTGCTCTGTAGGTAAGTAA+AGG - chr1_2:26157146-26157165 None:intergenic 40.0%
! TAAATTGGAGCTTGCTCTGT+AGG - chr1_2:26157156-26157175 None:intergenic 40.0%
TGTCTTGTGTTGTATGCTAG+GGG + chr1_2:26157237-26157256 Msa0064820:intron 40.0%
!! TCTTAAGTTGCGGTTTGGTT+TGG - chr1_2:26157380-26157399 None:intergenic 40.0%
TTGCCATGTTGCATTCAGTA+GGG - chr1_2:26157903-26157922 None:intergenic 40.0%
TTTGCCATGTTGCATTCAGT+AGG - chr1_2:26157904-26157923 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+AGG - chr1_2:26158057-26158076 None:intergenic 40.0%
TGTATGCAGATTCCTCAACA+AGG + chr1_2:26158185-26158204 Msa0064820:intron 40.0%
TCTCCTCTACATGTGTAACT+GGG - chr1_2:26158254-26158273 None:intergenic 40.0%
CAAGGAACAACACTTGATAG+AGG + chr1_2:26158363-26158382 Msa0064820:CDS 40.0%
! ACAACACTTGATAGAGGCAT+TGG + chr1_2:26158369-26158388 Msa0064820:CDS 40.0%
!! CAACACTTGATAGAGGCATT+GGG + chr1_2:26158370-26158389 Msa0064820:CDS 40.0%
!! AATGTACCTAAACTTGCTGG+TGG - chr1_2:26158408-26158427 None:intergenic 40.0%
!! AGATGGACTAAAAACCCTAG+AGG + chr1_2:26158492-26158511 Msa0064820:CDS 40.0%
GAAGGAGAGTAATTCCTCTA+GGG - chr1_2:26158509-26158528 None:intergenic 40.0%
TGAAGGAGAGTAATTCCTCT+AGG - chr1_2:26158510-26158529 None:intergenic 40.0%
GAGGAATTACTCTCCTTCAA+AGG + chr1_2:26158511-26158530 Msa0064820:CDS 40.0%
CTTAGTGTAGCCAAAGAACA+TGG + chr1_2:26158600-26158619 Msa0064820:CDS 40.0%
CATGGAGTAGTTGAAAATGG+AGG + chr1_2:26158618-26158637 Msa0064820:CDS 40.0%
!! TCAATGACTAGCTTAGGCAT+TGG + chr1_2:26158780-26158799 Msa0064820:CDS 40.0%
AACAGTTTCACACATCACTG+AGG + chr1_2:26158830-26158849 Msa0064820:CDS 40.0%
AGTGCTTGCAGAAGAATTGA+AGG + chr1_2:26159010-26159029 Msa0064820:CDS 40.0%
ACTAATCTCTTGGAGTCACT+TGG - chr1_2:26159058-26159077 None:intergenic 40.0%
AAACTGAGTGCAACTTGGCT+TGG + chr1_2:26153133-26153152 Msa0064820:five_prime_UTR 45.0%
AACTGAGTGCAACTTGGCTT+GGG + chr1_2:26153134-26153153 Msa0064820:five_prime_UTR 45.0%
!! TTGGCTTGGGACAACTAGTT+AGG + chr1_2:26153147-26153166 Msa0064820:five_prime_UTR 45.0%
AGGTTAACATGGAAGAGGGA+AGG + chr1_2:26153229-26153248 Msa0064820:exon 45.0%
GGTTAACATGGAAGAGGGAA+GGG + chr1_2:26153230-26153249 Msa0064820:exon 45.0%
GTGAGTGAGTTCACACAAGA+TGG + chr1_2:26153255-26153274 Msa0064820:CDS 45.0%
TCAAATCCAAAACCGGTTGC+TGG + chr1_2:26153307-26153326 Msa0064820:CDS 45.0%
! TGGAAGGAGGTACGTAAGAA+TGG + chr1_2:26153777-26153796 Msa0064820:intron 45.0%
AGGTACGTAAGAATGGCTTG+TGG + chr1_2:26153784-26153803 Msa0064820:intron 45.0%
AACCACAACAGACCTAGCAA+TGG + chr1_2:26153933-26153952 Msa0064820:intron 45.0%
GGTAGGTCATGTAGTAGCTT+TGG + chr1_2:26154500-26154519 Msa0064820:intron 45.0%
GATCCATATCCAGTGTCCTA+GGG - chr1_2:26154728-26154747 None:intergenic 45.0%
TGATCCATATCCAGTGTCCT+AGG - chr1_2:26154729-26154748 None:intergenic 45.0%
! GGAGTACCCCTTCAAAAAGA+AGG - chr1_2:26154752-26154771 None:intergenic 45.0%
GTCCATGGTACTAGTAAGCA+TGG + chr1_2:26154819-26154838 Msa0064820:intron 45.0%
TGCCATGCTTACTAGTACCA+TGG - chr1_2:26154824-26154843 None:intergenic 45.0%
TGTGAGATCCTAGGGTTTGA+CGG - chr1_2:26154998-26155017 None:intergenic 45.0%
TGGTTAGATACCCATTGGGA+TGG + chr1_2:26155215-26155234 Msa0064820:intron 45.0%
ATACCCATTGGGATGGTCTA+AGG + chr1_2:26155222-26155241 Msa0064820:intron 45.0%
TACCCATTGGGATGGTCTAA+GGG + chr1_2:26155223-26155242 Msa0064820:intron 45.0%
ACCAATGTCACCAATTGGGT+TGG + chr1_2:26155853-26155872 Msa0064820:CDS 45.0%
! ACCAACCCAATTGGTGACAT+TGG - chr1_2:26155857-26155876 None:intergenic 45.0%
CCAAATGGTACCAACCCAAT+TGG - chr1_2:26155866-26155885 None:intergenic 45.0%
!! CCAATTGGGTTGGTACCATT+TGG + chr1_2:26155863-26155882 Msa0064820:CDS 45.0%
TATGTTGCTGACGCCTATCT+TGG + chr1_2:26155907-26155926 Msa0064820:CDS 45.0%
! CATGACACTCAGGTGGTTTT+AGG - chr1_2:26156466-26156485 None:intergenic 45.0%
ACCACCTGAGTGTCATGAAA+TGG + chr1_2:26156469-26156488 Msa0064820:CDS 45.0%
TCCATTTCATGACACTCAGG+TGG - chr1_2:26156473-26156492 None:intergenic 45.0%
TACACTCTAGCAGTAGGAAC+AGG + chr1_2:26156551-26156570 Msa0064820:CDS 45.0%
! GCACCAATGGTGGAAATGTT+AGG - chr1_2:26156587-26156606 None:intergenic 45.0%
!! GATAATGTGGGTTGGACTCT+TGG + chr1_2:26156728-26156747 Msa0064820:CDS 45.0%
GGTTATGCACTTCCAACTCT+TGG + chr1_2:26156749-26156768 Msa0064820:CDS 45.0%
AGGGAGTCCCTTCACTAAAA+TGG + chr1_2:26156835-26156854 Msa0064820:CDS 45.0%
TTGATTCCACTCCCACATTG+AGG + chr1_2:26156969-26156988 Msa0064820:CDS 45.0%
CTTATACCTCAATGTGGGAG+TGG - chr1_2:26156978-26156997 None:intergenic 45.0%
CTCTGTAGGTAAGTAAAGGC+TGG - chr1_2:26157142-26157161 None:intergenic 45.0%
TACTAGAGTCCTCTTTCCCT+AGG + chr1_2:26157174-26157193 Msa0064820:intron 45.0%
AGTCCTCTTTCCCTAGGAAT+TGG + chr1_2:26157180-26157199 Msa0064820:intron 45.0%
!! AAGTTGCGGTTTGGTTTGGT+TGG - chr1_2:26157376-26157395 None:intergenic 45.0%
!! GCAACTTGGATTGGTTCGTA+TGG - chr1_2:26157765-26157784 None:intergenic 45.0%
!!! GCATGTGGTTCGGTTTTGTT+CGG - chr1_2:26157822-26157841 None:intergenic 45.0%
ACACCCTACTGAATGCAACA+TGG + chr1_2:26157897-26157916 Msa0064820:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr1_2:26158086-26158105 None:intergenic 45.0%
! TCTTGACACATGCCTTGTTG+AGG - chr1_2:26158200-26158219 None:intergenic 45.0%
ATGCCCAGTTACACATGTAG+AGG + chr1_2:26158248-26158267 Msa0064820:CDS 45.0%
GTCTCCTCTACATGTGTAAC+TGG - chr1_2:26158255-26158274 None:intergenic 45.0%
TTCCTATGCCCATCCTTTGA+AGG - chr1_2:26158527-26158546 None:intergenic 45.0%
! TCCAGAAAGCATGAAGAGCT+TGG + chr1_2:26158746-26158765 Msa0064820:CDS 45.0%
! CCAGAAAGCATGAAGAGCTT+GGG + chr1_2:26158747-26158766 Msa0064820:CDS 45.0%
TCACACATCACTGAGGAACA+TGG + chr1_2:26158837-26158856 Msa0064820:CDS 45.0%
ACTGAGGAACATGGTCACAA+AGG + chr1_2:26158846-26158865 Msa0064820:CDS 45.0%
CTGAGGAACATGGTCACAAA+GGG + chr1_2:26158847-26158866 Msa0064820:CDS 45.0%
!!! TAATAACTAATTAATAATTT+TGG - chr1_2:26153668-26153687 None:intergenic 5.0%
!!! TTTAACAATTTTAATAAAAA+AGG - chr1_2:26153749-26153768 None:intergenic 5.0%
!!! ATTATTGTTTTATTTTTTTA+AGG + chr1_2:26154650-26154669 Msa0064820:intron 5.0%
!!! TTATTGTTTTATTTTTTTAA+GGG + chr1_2:26154651-26154670 Msa0064820:intron 5.0%
!!! TTTTTTTTTTTTTTAAAGAT+AGG - chr1_2:26154968-26154987 None:intergenic 5.0%
!! TTAATTAAGTAAAAATATAT+AGG + chr1_2:26156008-26156027 Msa0064820:intron 5.0%
!! AGCTTTCCAGCAACCGGTTT+TGG - chr1_2:26153316-26153335 None:intergenic 50.0%
GGAACAAGCTTTCCAGCAAC+CGG - chr1_2:26153322-26153341 None:intergenic 50.0%
!! GAGCAACACCGTTAGCTTGT+CGG + chr1_2:26153573-26153592 Msa0064820:intron 50.0%
TGCCATTGCTAGGTCTGTTG+TGG - chr1_2:26153938-26153957 None:intergenic 50.0%
! AACTGTGGCTTGCCATTGCT+AGG - chr1_2:26153948-26153967 None:intergenic 50.0%
!! AAAGGAGTACCCTAGGACAC+TGG + chr1_2:26154716-26154735 Msa0064820:intron 50.0%
GTACCCTAGGACACTGGATA+TGG + chr1_2:26154722-26154741 Msa0064820:intron 50.0%
ACCCATTGGGATGGTCTAAG+GGG + chr1_2:26155224-26155243 Msa0064820:intron 50.0%
ACCCCTTAGACCATCCCAAT+GGG - chr1_2:26155228-26155247 None:intergenic 50.0%
ACGCCTATCTTGGCCGTTAT+TGG + chr1_2:26155917-26155936 Msa0064820:CDS 50.0%
GGTCCAATAACGGCCAAGAT+AGG - chr1_2:26155923-26155942 None:intergenic 50.0%
AGACATGCCCTGCCAATTTG+AGG - chr1_2:26156414-26156433 None:intergenic 50.0%
!!! CACTCAGGTGGTTTTAGGCT+TGG - chr1_2:26156461-26156480 None:intergenic 50.0%
GCACTCTACACTCTAGCAGT+AGG + chr1_2:26156545-26156564 Msa0064820:CDS 50.0%
ACTCTAGCAGTAGGAACAGG+TGG + chr1_2:26156554-26156573 Msa0064820:CDS 50.0%
TTAGTGAAGGGACTCCCTGT+AGG - chr1_2:26156833-26156852 None:intergenic 50.0%
CCTCCAATTCCTAGGGAAAG+AGG - chr1_2:26157186-26157205 None:intergenic 50.0%
CCTCTTTCCCTAGGAATTGG+AGG + chr1_2:26157183-26157202 Msa0064820:intron 50.0%
!! TTGGATTGGTTCGTATGGCG+CGG - chr1_2:26157760-26157779 None:intergenic 50.0%
! TGCATTCAGTAGGGTGTTCG+CGG - chr1_2:26157894-26157913 None:intergenic 50.0%
TGTGGTCGAGGTTTGAACCT+CGG + chr1_2:26158037-26158056 Msa0064820:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr1_2:26158087-26158106 None:intergenic 50.0%
CTCCTTCAAAGGATGGGCAT+AGG + chr1_2:26158522-26158541 Msa0064820:CDS 50.0%
CCCAAGCTCTTCATGCTTTC+TGG - chr1_2:26158750-26158769 None:intergenic 50.0%
AGGAACATGGTCACAAAGGG+TGG + chr1_2:26158850-26158869 Msa0064820:CDS 50.0%
CACCCCTTAGACCATCCCAA+TGG - chr1_2:26155229-26155248 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_2:26158091-26158110 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_2:26158088-26158107 Msa0064820:intron 55.0%
CTGAGCTAAGCTCACGAGGA+CGG + chr1_2:26158092-26158111 Msa0064820:intron 55.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG - chr1_2:26157879-26157898 None:intergenic 60.0%
! TCAGTAGGGTGTTCGCGGTG+CGG - chr1_2:26157889-26157908 None:intergenic 60.0%
! AGGGTGTTCGCGGTGCGGTT+TGG - chr1_2:26157884-26157903 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 26153131 26159307 26153131 ID=Msa0064820;Name=Msa0064820
chr1_2 mRNA 26153131 26159307 26153131 ID=Msa0064820-mRNA-1;Parent=Msa0064820;Name=Msa0064820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|1|1|1|1|1|4|231|593
chr1_2 exon 26153131 26153351 26153131 ID=Msa0064820-mRNA-1:exon:9309;Parent=Msa0064820-mRNA-1
chr1_2 exon 26155755 26155972 26155755 ID=Msa0064820-mRNA-1:exon:9310;Parent=Msa0064820-mRNA-1
chr1_2 exon 26156425 26156990 26156425 ID=Msa0064820-mRNA-1:exon:9311;Parent=Msa0064820-mRNA-1
chr1_2 exon 26158194 26159307 26158194 ID=Msa0064820-mRNA-1:exon:9312;Parent=Msa0064820-mRNA-1
chr1_2 five_prime_UTR 26153131 26153236 26153131 ID=Msa0064820-mRNA-1:five_prime_utr;Parent=Msa0064820-mRNA-1
chr1_2 CDS 26153237 26153351 26153237 ID=Msa0064820-mRNA-1:cds;Parent=Msa0064820-mRNA-1
chr1_2 CDS 26155755 26155972 26155755 ID=Msa0064820-mRNA-1:cds;Parent=Msa0064820-mRNA-1
chr1_2 CDS 26156425 26156990 26156425 ID=Msa0064820-mRNA-1:cds;Parent=Msa0064820-mRNA-1
chr1_2 CDS 26158194 26159076 26158194 ID=Msa0064820-mRNA-1:cds;Parent=Msa0064820-mRNA-1
chr1_2 three_prime_UTR 26159077 26159307 26159077 ID=Msa0064820-mRNA-1:three_prime_utr;Parent=Msa0064820-mRNA-1
Gene Sequence

>Msa0064820

ATGGAAGAGGGAAGGGTAGTGAGTGAGTTCACACAAGATGGAACTGTTGATCTTAAAGGGAAACCTATTCTCAAATCCAAAACCGGTTGCTGGAAAGCTTGTTCCTTCTTTGTTGTGTATGAGGTATTTGAGAGAATGGCTTATTATGGGATATCATCAAATTTGATCTTATATTTAATAAAGAAGCTTCATCAAGGTACTGTGACTTCTTCTACCAATGTCACCAATTGGGTTGGTACCATTTGGATCACTCCAATATTAGGTGCTTATGTTGCTGACGCCTATCTTGGCCGTTATTGGACCTTTGTTACTGCTTCCTTTATCTACCTATTGGGCATGTCTATGCTCACATTATCAGTTTCTCTTCCAAGCCTAAAACCACCTGAGTGTCATGAAATGGATGTTACAAAATGCAAGGAAGCTTCCACATTACAGCTAGTAGTGTTCTATGGTGCACTCTACACTCTAGCAGTAGGAACAGGTGGAACTAAGCCTAACATTTCCACCATTGGTGCTGATCAATTTGATGAGTTTGACACAAAAGAGAAGAAACATAAACTCTCATTCTTCAATTGGTGGATGTTCAGCATCTTTATTGGGACCCTTTTTGCAAATTCTGTTTTAGTCTATATACAAGATAATGTGGGTTGGACTCTTGGTTATGCACTTCCAACTCTTGGACTTGCAATATCTATCATAATATTTTTGGCAGGCACACCATTCTATAGACATAAAGTACCTACAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATTGTGGCTGCTATGAAGAAATGGAATGTGCCTATTCCTAGTGACCCTAAAGAACTATATGAACTTGATTTGGAAGAGTATGCAAAGAAAGGAAGTGTTAGAATTGATTCCACTCCCACATTGAGATTCCTCAACAAGGCATGTGTCAAGACTAATTCAAGTACTAGTGGAGGTGTGTTATGCCCAGTTACACATGTAGAGGAGACCAAACAAATGATAAGAATGATCCCAATCATGGCTACTACATTAATTCCTAGTACAATGATTGCTCAAATAAATACACTATTTGTGAAGCAAGGAACAACACTTGATAGAGGCATTGGGAGTTTCAAAATTCCACCAGCAAGTTTAGGTACATTTGTGACAATATCAATGCTTATAAGTGTTGTGCTCTATGATCGTTTCTTTGTAAAGATTATGCAGAGATGGACTAAAAACCCTAGAGGAATTACTCTCCTTCAAAGGATGGGCATAGGAATCATAATTCATATAGTGATTATGGTAGTTGCAACTTTCACTGAAAGATATAGGCTTAGTGTAGCCAAAGAACATGGAGTAGTTGAAAATGGAGGATTAGTTCCATTGAGCATATTCATTTTACTCCCTCAATTTTTACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCTAAAATTGAGTTCTTCTATGATCAAGCTCCAGAAAGCATGAAGAGCTTGGGCACTTCTTATTCAATGACTAGCTTAGGCATTGGAAATTTTATTAGTACATTTCTTCTATCAACAGTTTCACACATCACTGAGGAACATGGTCACAAAGGGTGGATTTTGAATAACCTCAATGCTTCTCATCTTGATTACTACTATGCATTTTTGGCAATATTAAACATCTTGAACTTTATCTTCTTTTGTATTGTTACGAAGTATTATGTATATAGAGCTGAAATTTCAGATTCCATAAAAGTGCTTGCAGAAGAATTGAAGGAGAAGAAAAGTGTTGTGTCATACCAAGTGACTCCAAGAGATTAG
Protein sequence

>Msa0064820

MEEGRVVSEFTQDGTVDLKGKPILKSKTGCWKACSFFVVYEVFERMAYYGISSNLILYLIKKLHQGTVTSSTNVTNWVGTIWITPILGAYVADAYLGRYWTFVTASFIYLLGMSMLTLSVSLPSLKPPECHEMDVTKCKEASTLQLVVFYGALYTLAVGTGGTKPNISTIGADQFDEFDTKEKKHKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLAGTPFYRHKVPTGSPFTKMAKVIVAAMKKWNVPIPSDPKELYELDLEEYAKKGSVRIDSTPTLRFLNKACVKTNSSTSGGVLCPVTHVEETKQMIRMIPIMATTLIPSTMIAQINTLFVKQGTTLDRGIGSFKIPPASLGTFVTISMLISVVLYDRFFVKIMQRWTKNPRGITLLQRMGIGIIIHIVIMVVATFTERYRLSVAKEHGVVENGGLVPLSIFILLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFISTFLLSTVSHITEEHGHKGWILNNLNASHLDYYYAFLAILNILNFIFFCIVTKYYVYRAEISDSIKVLAEELKEKKSVVSYQVTPRD*