AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021410 MtrunA17_Chr1g0166711 98.482 593 9 0 1 593 1 593 0.0 1199
Msa0021410 MtrunA17_Chr1g0187241 81.026 585 107 3 1 582 1 584 0.0 998
Msa0021410 MtrunA17_Chr1g0166791 74.874 593 145 2 1 592 3 592 0.0 920
Msa0021410 MtrunA17_Chr1g0166731 93.162 468 32 0 112 579 9 476 0.0 882
Msa0021410 MtrunA17_Chr1g0166741 72.260 584 154 2 1 583 3 579 0.0 856
Msa0021410 MtrunA17_Chr1g0166771 72.527 546 142 2 39 583 5 543 0.0 796
Msa0021410 MtrunA17_Chr7g0261771 63.830 564 201 3 9 570 15 577 0.0 767
Msa0021410 MtrunA17_Chr7g0261881 61.646 571 214 4 2 570 6 573 0.0 765
Msa0021410 MtrunA17_Chr7g0261811 61.471 571 215 4 2 570 6 573 0.0 756
Msa0021410 MtrunA17_Chr7g0261791 60.601 566 219 3 2 564 6 570 0.0 729
Msa0021410 MtrunA17_Chr7g0261851 61.837 566 213 3 1 564 4 568 0.0 718
Msa0021410 MtrunA17_Chr7g0261661 59.794 485 188 5 113 592 1 483 0.0 610
Msa0021410 MtrunA17_Chr3g0114501 52.241 580 269 4 9 584 6 581 0.0 608
Msa0021410 MtrunA17_Chr7g0261751 57.755 490 168 4 8 459 14 502 0.0 585
Msa0021410 MtrunA17_Chr8g0375311 45.884 571 296 3 1 561 12 579 0.0 537
Msa0021410 MtrunA17_Chr3g0104011 46.690 574 291 7 1 567 1 566 0.0 525
Msa0021410 MtrunA17_Chr8g0375291 44.742 561 298 3 2 556 20 574 1.14e-177 515
Msa0021410 MtrunA17_Chr7g0241741 44.974 567 300 5 10 570 7 567 1.39e-175 509
Msa0021410 MtrunA17_Chr8g0375351 42.576 559 312 2 9 561 24 579 7.30e-172 500
Msa0021410 MtrunA17_Chr4g0005901 44.563 561 299 5 10 564 17 571 4.65e-170 495
Msa0021410 MtrunA17_Chr8g0375321 42.226 566 318 2 2 561 14 576 1.05e-168 492
Msa0021410 MtrunA17_Chr8g0375341 42.397 559 313 2 9 561 24 579 2.20e-168 491
Msa0021410 MtrunA17_Chr8g0375331 43.494 538 295 2 8 539 7 541 1.04e-166 486
Msa0021410 MtrunA17_Chr7g0261731 64.286 336 118 2 9 343 15 349 9.68e-164 471
Msa0021410 MtrunA17_Chr8g0375361 43.268 557 307 2 11 561 25 578 3.60e-157 463
Msa0021410 MtrunA17_Chr7g0240381 41.391 575 310 8 9 572 13 571 9.46e-154 454
Msa0021410 MtrunA17_Chr3g0077151 40.741 567 301 6 3 564 7 543 2.76e-149 441
Msa0021410 MtrunA17_Chr4g0014871 40.108 556 309 7 13 564 18 553 3.74e-146 434
Msa0021410 MtrunA17_Chr4g0014791 41.727 556 297 7 13 564 17 549 4.09e-145 431
Msa0021410 MtrunA17_Chr3g0112611 40.068 584 329 10 13 584 20 594 7.95e-145 431
Msa0021410 MtrunA17_Chr3g0142101 39.753 566 319 9 1 561 15 563 2.37e-144 430
Msa0021410 MtrunA17_Chr3g0112671 39.964 558 313 6 13 565 21 561 3.26e-144 429
Msa0021410 MtrunA17_Chr4g0008651 39.324 562 325 8 9 564 18 569 2.27e-143 427
Msa0021410 MtrunA17_Chr4g0014781 40.647 556 305 8 13 564 17 551 3.05e-141 421
Msa0021410 MtrunA17_Chr3g0142091 40.603 564 321 7 2 561 3 556 1.15e-140 420
Msa0021410 MtrunA17_Chr4g0014841 41.219 558 301 8 11 564 15 549 1.86e-140 419
Msa0021410 MtrunA17_Chr5g0399061 39.199 574 330 7 17 580 19 583 2.54e-139 417
Msa0021410 MtrunA17_Chr5g0422881 39.783 553 324 5 19 564 14 564 2.70e-138 414
Msa0021410 MtrunA17_Chr4g0014801 40.468 556 306 8 13 564 17 551 6.19e-137 410
Msa0021410 MtrunA17_Chr5g0400371 35.932 590 359 7 9 589 96 675 5.13e-133 404
Msa0021410 MtrunA17_Chr5g0399071 39.212 584 335 7 11 579 7 585 1.23e-132 400
Msa0021410 MtrunA17_Chr4g0054891 36.477 562 341 5 9 561 94 648 4.71e-132 401
Msa0021410 MtrunA17_Chr4g0056431 39.161 572 329 6 17 577 17 580 1.30e-129 392
Msa0021410 MtrunA17_Chr7g0217461 36.414 541 330 5 11 540 10 547 1.04e-127 387
Msa0021410 MtrunA17_Chr7g0255621 35.826 575 351 9 25 586 20 589 8.02e-126 383
Msa0021410 MtrunA17_Chr7g0214461 35.189 557 349 5 25 577 79 627 7.61e-125 381
Msa0021410 MtrunA17_Chr1g0213711 34.806 566 351 7 25 585 21 573 6.10e-123 375
Msa0021410 MtrunA17_Chr8g0353031 38.710 558 307 6 26 569 19 555 8.27e-123 374
Msa0021410 MtrunA17_Chr5g0439381 38.356 584 325 8 12 579 15 579 8.82e-123 374
Msa0021410 MtrunA17_Chr4g0063591 38.859 561 323 5 10 561 7 556 1.99e-122 373
Msa0021410 MtrunA17_Chr7g0218851 35.149 569 356 5 18 580 39 600 5.60e-122 373
Msa0021410 MtrunA17_Chr7g0255601 35.374 588 356 11 16 588 18 596 6.14e-122 373
Msa0021410 MtrunA17_Chr7g0255611 35.169 563 349 7 12 564 18 574 7.11e-122 372
Msa0021410 MtrunA17_Chr5g0415791 36.620 568 347 6 25 581 29 594 1.46e-120 369
Msa0021410 MtrunA17_Chr2g0284701 36.014 572 348 7 13 566 19 590 3.51e-118 363
Msa0021410 MtrunA17_Chr3g0133341 35.472 561 347 6 21 573 10 563 5.12e-116 356
Msa0021410 MtrunA17_Chr8g0362711 34.683 568 347 6 14 565 13 572 2.26e-115 355
Msa0021410 MtrunA17_Chr7g0214731 35.752 565 348 8 16 566 51 614 1.68e-114 355
Msa0021410 MtrunA17_Chr4g0011041 33.391 575 357 8 2 561 15 578 3.46e-111 344
Msa0021410 MtrunA17_Chr5g0415961 34.315 577 355 8 7 566 5 574 3.51e-110 342
Msa0021410 MtrunA17_Chr2g0276751 35.366 574 345 9 1 568 14 567 1.23e-108 338
Msa0021410 MtrunA17_Chr4g0014861 40.094 424 242 5 145 564 13 428 1.68e-108 332
Msa0021410 MtrunA17_Chr4g0011471 34.259 540 331 6 36 561 27 556 1.05e-103 325
Msa0021410 MtrunA17_Chr1g0193391 32.517 572 363 10 13 576 3 559 8.96e-102 321
Msa0021410 MtrunA17_Chr4g0060001 33.279 610 375 11 1 586 1 602 4.59e-101 319
Msa0021410 MtrunA17_Chr8g0390331 31.944 576 368 8 24 588 14 576 2.49e-99 313
Msa0021410 MtrunA17_Chr7g0271221 32.753 574 366 7 12 580 4 562 4.26e-99 313
Msa0021410 MtrunA17_Chr4g0059971 32.605 549 351 7 31 564 40 584 1.08e-97 310
Msa0021410 MtrunA17_Chr4g0059991 32.920 565 361 6 31 580 28 589 2.24e-97 309
Msa0021410 MtrunA17_Chr3g0082631 38.526 475 247 8 109 564 11 459 3.67e-97 305
Msa0021410 MtrunA17_Chr4g0059981 31.707 615 372 8 6 584 2 604 1.48e-96 307
Msa0021410 MtrunA17_Chr8g0379971 32.609 598 366 10 1 566 1 593 3.79e-93 298
Msa0021410 MtrunA17_Chr8g0362781 31.570 567 362 11 18 565 23 582 3.84e-93 298
Msa0021410 MtrunA17_Chr7g0240271 30.952 588 387 6 8 582 7 588 3.93e-93 298
Msa0021410 MtrunA17_Chr6g0451841 32.799 561 324 14 32 570 12 541 9.51e-93 295
Msa0021410 MtrunA17_Chr1g0157601 32.234 546 346 9 29 561 19 553 1.17e-91 293
Msa0021410 MtrunA17_Chr8g0362801 35.043 468 289 7 113 568 1 465 1.59e-91 290
Msa0021410 MtrunA17_Chr4g0069581 32.717 541 348 6 42 578 3 531 1.25e-90 290
Msa0021410 MtrunA17_Chr1g0147631 31.942 551 350 10 25 561 25 564 3.59e-88 285
Msa0021410 MtrunA17_Chr2g0331511 31.661 578 355 16 36 591 32 591 2.83e-86 281
Msa0021410 MtrunA17_Chr8g0379991 32.513 569 333 11 46 566 1 566 5.15e-86 278
Msa0021410 MtrunA17_Chr2g0331471 32.418 546 334 13 36 561 99 629 4.00e-85 280
Msa0021410 MtrunA17_Chr2g0331521 29.508 549 368 9 25 561 22 563 1.24e-84 275
Msa0021410 MtrunA17_Chr7g0261721 61.500 200 77 0 368 567 5 204 1.94e-84 263
Msa0021410 MtrunA17_Chr2g0331481 32.051 546 336 13 36 561 36 566 3.23e-82 270
Msa0021410 MtrunA17_Chr7g0240281 31.942 551 358 6 25 562 24 570 3.84e-82 269
Msa0021410 MtrunA17_Chr2g0331461 31.597 576 361 14 36 592 36 597 1.58e-80 266
Msa0021410 MtrunA17_Chr1g0157611 30.488 574 372 12 13 570 2 564 2.15e-80 263
Msa0021410 MtrunA17_Chr1g0157621 32.197 528 335 11 46 561 1 517 2.03e-79 261
Msa0021410 MtrunA17_Chr3g0142111 41.391 302 171 3 8 307 29 326 1.05e-78 252
Msa0021410 MtrunA17_Chr4g0003761 29.474 570 380 11 21 578 27 586 2.99e-77 256
Msa0021410 MtrunA17_Chr7g0235521 32.359 479 297 7 113 570 1 473 2.87e-74 245
Msa0021410 MtrunA17_Chr7g0240211 32.150 479 298 7 113 570 1 473 1.64e-72 240
Msa0021410 MtrunA17_Chr7g0240181 32.150 479 298 7 113 570 1 473 1.78e-72 240
Msa0021410 MtrunA17_Chr7g0240131 31.942 479 299 7 113 570 1 473 3.71e-72 239
Msa0021410 MtrunA17_Chr2g0326211 28.371 571 365 11 13 564 2 547 4.51e-72 241
Msa0021410 MtrunA17_Chr2g0325951 28.571 567 369 9 13 564 2 547 5.17e-72 241
Msa0021410 MtrunA17_Chr1g0166721 84.615 130 15 1 1 130 1 125 8.36e-71 224
Msa0021410 MtrunA17_Chr2g0325961 28.196 571 367 11 13 564 2 548 3.78e-69 233
Msa0021410 MtrunA17_Chr7g0240151 31.106 479 285 8 113 570 1 455 1.46e-66 224
Msa0021410 MtrunA17_Chr1g0177591 27.866 567 366 15 8 561 28 564 4.36e-65 223
Msa0021410 MtrunA17_Chr5g0415841 29.247 465 310 6 113 564 1 459 3.04e-64 218
Msa0021410 MtrunA17_Chr7g0234381 32.667 450 269 7 112 561 3 418 1.00e-62 213
Msa0021410 MtrunA17_Chr7g0234151 32.667 450 269 7 112 561 3 418 1.81e-61 209
Msa0021410 MtrunA17_Chr7g0234181 32.589 448 266 7 115 561 1 413 2.74e-61 208
Msa0021410 MtrunA17_Chr3g0112631 38.488 291 165 6 300 583 3 286 3.60e-60 202
Msa0021410 MtrunA17_Chr3g0142121 38.258 264 151 5 301 561 11 265 6.72e-54 185
Msa0021410 MtrunA17_Chr1g0177611 28.306 431 283 9 142 561 20 435 3.12e-52 185
Msa0021410 MtrunA17_Chr7g0261831 57.419 155 63 3 255 407 1 154 6.16e-52 177
Msa0021410 MtrunA17_Chr4g0060071 33.444 302 192 4 270 565 1 299 9.82e-52 180
Msa0021410 MtrunA17_Chr1g0177631 28.176 433 281 10 142 561 20 435 1.59e-49 177
Msa0021410 MtrunA17_Chr7g0261671 69.903 103 31 0 9 111 16 118 5.15e-48 163
Msa0021410 MtrunA17_Chr3g0112651 39.474 190 108 2 112 301 21 203 1.42e-42 152
Msa0021410 MtrunA17_Chr4g0014851 45.455 110 60 0 13 122 18 127 1.43e-26 106
Msa0021410 MtrunA17_Chr1g0147591 33.846 195 112 4 156 339 10 198 1.61e-25 104
Msa0021410 MtrunA17_Chr4g0060061 41.322 121 71 0 138 258 8 128 5.48e-25 100
Msa0021410 MtrunA17_Chr7g0261821 58.209 67 28 0 502 568 1 67 2.09e-24 96.7
Msa0021410 MtrunA17_Chr3g0112661 43.434 99 56 0 13 111 19 117 4.12e-21 89.7
Msa0021410 MtrunA17_Chr2g0326221 26.050 238 146 4 328 564 15 223 4.28e-17 80.9
Msa0021410 MtrunA17_Chr4g0060051 38.889 108 63 1 1 108 1 105 1.39e-16 76.6
Msa0021410 MtrunA17_Chr3g0082621 45.070 71 39 0 41 111 2 72 1.67e-14 69.3
Msa0021410 MtrunA17_Chr8g0362791 38.554 83 51 0 31 113 42 124 4.64e-14 69.7
Msa0021410 MtrunA17_Chr8g0382601 33.721 86 56 1 208 292 1 86 1.42e-11 60.8
Msa0021410 MtrunA17_Chr7g0261841 50.000 54 26 1 113 165 1 54 1.63e-11 60.8
Msa0021410 MtrunA17_Chr1g0166761 68.421 38 11 1 1 38 3 39 2.12e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021410 AT5G46050.1 68.621 580 178 4 5 582 5 582 0.0 804
Msa0021410 AT5G46040.1 64.786 585 199 5 6 588 6 585 0.0 748
Msa0021410 AT5G46050.2 68.432 472 145 4 113 582 1 470 0.0 649
Msa0021410 AT2G40460.1 53.521 568 251 6 1 566 1 557 0.0 611
Msa0021410 AT2G02040.1 45.217 575 302 4 1 565 12 583 0.0 538
Msa0021410 AT3G54140.1 46.167 574 294 7 1 567 1 566 0.0 526
Msa0021410 AT3G54140.2 46.167 574 294 7 1 567 1 566 0.0 526
Msa0021410 AT5G01180.2 44.870 575 294 6 1 564 1 563 1.51e-175 509
Msa0021410 AT5G01180.3 44.870 575 294 6 1 564 1 563 1.51e-175 509
Msa0021410 AT5G01180.1 44.870 575 294 6 1 564 1 563 1.51e-175 509
Msa0021410 AT1G62200.1 42.729 557 305 2 7 557 32 580 2.61e-169 494
Msa0021410 AT1G62200.2 40.785 586 304 3 7 557 32 609 2.50e-163 480
Msa0021410 AT1G62200.3 40.785 586 304 3 7 557 46 623 3.94e-163 480
Msa0021410 AT2G02020.1 42.096 563 282 6 1 556 13 538 3.33e-158 464
Msa0021410 AT3G53960.1 41.536 573 315 9 13 576 23 584 7.70e-150 445
Msa0021410 AT2G37900.1 39.177 559 319 6 13 565 24 567 4.38e-143 427
Msa0021410 AT3G54450.1 40.288 556 297 7 23 564 8 542 1.82e-142 424
Msa0021410 AT2G02020.2 39.076 563 278 8 1 556 13 517 8.66e-138 411
Msa0021410 AT1G22540.1 40.468 556 304 9 15 564 18 552 8.02e-137 410
Msa0021410 AT1G32450.1 37.167 600 350 9 9 585 19 614 5.49e-133 402
Msa0021410 AT1G12110.1 38.103 580 337 7 17 584 17 586 1.98e-132 400
Msa0021410 AT1G68570.1 39.427 558 324 7 17 564 15 568 1.29e-130 395
Msa0021410 AT1G72140.1 37.108 574 322 8 2 565 9 553 2.99e-130 393
Msa0021410 AT1G68570.2 39.564 551 321 6 41 581 7 555 3.16e-130 393
Msa0021410 AT2G26690.1 39.748 556 312 6 16 561 13 555 8.45e-128 387
Msa0021410 AT1G22550.1 39.092 573 320 10 2 564 6 559 5.78e-127 385
Msa0021410 AT2G37900.2 39.880 499 279 6 73 565 5 488 1.49e-125 379
Msa0021410 AT1G72120.1 39.007 564 313 9 9 564 12 552 1.82e-124 378
Msa0021410 AT1G22570.1 40.280 571 317 9 2 564 6 560 1.95e-123 376
Msa0021410 AT1G72125.1 38.968 562 320 8 9 564 12 556 3.26e-123 375
Msa0021410 AT4G21680.1 35.575 565 348 4 11 563 12 572 2.31e-122 374
Msa0021410 AT2G26690.2 39.548 531 298 6 41 561 5 522 3.31e-120 367
Msa0021410 AT1G72130.1 35.584 548 310 8 23 563 21 532 1.08e-119 365
Msa0021410 AT3G21670.1 36.318 603 346 8 8 591 7 590 1.46e-117 361
Msa0021410 AT5G19640.1 35.294 578 348 8 2 572 34 592 2.52e-117 361
Msa0021410 AT2G26690.3 39.464 522 293 6 50 561 2 510 3.07e-117 358
Msa0021410 AT1G59740.1 35.826 575 355 6 9 577 23 589 3.36e-117 360
Msa0021410 AT5G13400.1 36.444 568 350 6 16 572 52 619 5.47e-116 358
Msa0021410 AT1G22570.2 40.789 532 292 8 41 564 7 523 3.11e-115 353
Msa0021410 AT1G69870.1 34.888 579 357 7 24 592 48 616 1.43e-112 349
Msa0021410 AT1G69850.1 33.448 580 359 5 13 570 11 585 1.56e-111 346
Msa0021410 AT1G27040.1 33.514 552 362 3 13 563 13 560 7.18e-107 333
Msa0021410 AT1G27040.2 33.514 552 362 3 13 563 9 556 7.61e-107 333
Msa0021410 AT1G33440.1 35.472 561 341 8 9 561 20 567 2.44e-105 330
Msa0021410 AT1G27040.3 33.710 531 347 3 34 563 2 528 2.59e-103 323
Msa0021410 AT3G16180.1 33.154 558 348 9 21 561 16 565 7.52e-103 323
Msa0021410 AT1G18880.1 33.333 564 353 8 31 576 23 581 5.02e-99 313
Msa0021410 AT1G52190.1 31.734 542 349 8 36 561 30 566 5.13e-98 311
Msa0021410 AT1G27080.1 33.105 583 359 10 21 592 8 570 1.43e-95 304
Msa0021410 AT5G62730.1 31.088 579 363 7 1 566 32 587 3.08e-93 298
Msa0021410 AT1G72130.2 35.023 434 250 6 137 563 6 414 1.84e-91 288
Msa0021410 AT1G72130.3 35.023 434 250 6 137 563 6 414 1.84e-91 288
Msa0021410 AT5G14940.1 30.851 564 349 10 25 569 5 546 5.49e-91 291
Msa0021410 AT5G28470.2 32.428 552 349 11 23 561 13 553 1.13e-89 288
Msa0021410 AT5G62680.1 31.942 551 357 5 31 566 47 594 1.32e-89 290
Msa0021410 AT5G62730.2 31.261 547 342 7 33 566 3 528 3.85e-88 283
Msa0021410 AT3G25260.1 32.907 547 323 13 17 561 11 515 6.90e-88 282
Msa0021410 AT3G47960.1 32.062 577 364 8 31 584 65 636 1.79e-87 285
Msa0021410 AT1G27080.2 33.212 548 335 10 56 592 1 528 2.91e-87 281
Msa0021410 AT5G28470.1 32.246 552 348 12 23 561 13 551 7.76e-87 281
Msa0021410 AT3G45650.1 29.706 579 375 8 6 576 1 555 9.23e-84 273
Msa0021410 AT3G01350.1 29.983 577 350 12 24 569 3 556 9.78e-83 270
Msa0021410 AT3G45700.1 30.536 560 355 12 26 580 15 545 2.62e-82 268
Msa0021410 AT1G69860.1 33.149 543 339 8 31 564 22 549 3.62e-82 268
Msa0021410 AT3G45710.1 30.674 564 355 11 27 579 21 559 5.33e-82 268
Msa0021410 AT3G45680.1 31.053 570 354 13 6 564 1 542 1.22e-81 267
Msa0021410 AT3G45720.1 32.397 534 321 14 49 570 41 546 1.42e-81 266
Msa0021410 AT3G25280.1 31.330 549 335 9 17 561 11 521 2.73e-80 262
Msa0021410 AT3G45660.1 30.871 528 331 10 46 564 40 542 9.52e-79 259
Msa0021410 AT3G45660.3 30.871 528 331 10 46 564 40 542 9.52e-79 259
Msa0021410 AT3G45660.2 30.682 528 332 10 46 564 61 563 1.59e-78 259
Msa0021410 AT3G45650.2 28.430 605 375 9 6 576 1 581 3.62e-78 258
Msa0021410 AT3G45690.1 29.151 542 322 12 26 564 17 499 2.14e-69 233
Msa0021410 AT5G11570.1 26.993 552 323 14 13 561 2 476 1.98e-54 192
Msa0021410 AT2G38100.2 25.287 522 336 12 55 561 2 484 6.59e-39 150
Msa0021410 AT2G38100.1 25.287 522 336 12 55 561 18 500 1.26e-38 149
Msa0021410 AT2G38100.3 25.287 522 336 12 55 561 24 506 1.80e-38 149

Find 127 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTCATATAGTTCTTT+AGG 0.172531 1_1:+38167208 None:intergenic
ACTCCAAGAGATTAGTTTAT+TGG 0.175091 1_1:-38165058 Msa0021410:exon
ACGCCTACCTTGGCCGTTAT+TGG 0.203711 1_1:-38168202 Msa0021410:CDS
TTTGAGAGAATGGCTTATTA+TGG 0.210968 1_1:-38168353 Msa0021410:CDS
GATGGAACTGTTGATCTTAA+AGG 0.218915 1_1:-38170882 Msa0021410:CDS
ATTTGGATCACTCCAATATT+AGG 0.239092 1_1:-38168239 Msa0021410:CDS
GTCTCCTCTACATGTGTAAC+TGG 0.243014 1_1:+38165868 None:intergenic
TTCAACTACTCCATGTTCTT+TGG 0.279867 1_1:+38165510 None:intergenic
CATAATTCATATAGTGATTA+TGG 0.284425 1_1:-38165572 Msa0021410:CDS
AGAACTATATGAACTTGATT+TGG 0.287269 1_1:-38167203 Msa0021410:CDS
GATCATTCTTATCATTTGTT+TGG 0.294014 1_1:+38165846 None:intergenic
GAACATGGAGTAGTTGAAAA+TGG 0.302397 1_1:-38165505 Msa0021410:CDS
GAGATTAGTTTATTGGTTCT+TGG 0.309855 1_1:-38165051 Msa0021410:exon
CTAAAACAGAATTTGCAAAA+AGG 0.325782 1_1:+38167425 None:intergenic
GGATGTTCAGCATCTTTATT+GGG 0.330214 1_1:-38167450 Msa0021410:CDS
AAAATTCCACCAGCAAGTTT+AGG 0.331725 1_1:-38165721 Msa0021410:CDS
AGGGAGTCCCTTCACTAAAA+TGG 0.333057 1_1:-38167284 Msa0021410:CDS
AGCTTTCCAACAACCAGTTT+TGG 0.334652 1_1:+38170842 None:intergenic
CCAATTGGGTTGGTACCATT+TGG 0.335195 1_1:-38168256 Msa0021410:CDS
TGGATGTTCAGCATCTTTAT+TGG 0.338681 1_1:-38167451 Msa0021410:CDS
CAAGTTCATATAGTTCTTTA+GGG 0.338874 1_1:+38167209 None:intergenic
TGCTTCCTTTATCTACCTAT+TGG 0.339032 1_1:-38168168 Msa0021410:intron
GCAACATAAGCACCTAATAT+TGG 0.342872 1_1:+38168227 None:intergenic
CAACTTTCACTGAAAGATAT+AGG 0.345759 1_1:-38165543 Msa0021410:CDS
TTGAGAGAATGGCTTATTAT+GGG 0.354991 1_1:-38168352 Msa0021410:CDS
CTTCTACCAATGTCACCAAT+TGG 0.359761 1_1:-38168271 Msa0021410:CDS
CCTATTCTCAAATCCAAAAC+TGG 0.369861 1_1:-38170855 Msa0021410:CDS
ATAAACTCTCATTCTTCAAT+TGG 0.378779 1_1:-38167474 Msa0021410:CDS
AAAGCTTGTTCCTTCTTTGT+TGG 0.383274 1_1:-38170825 Msa0021410:intron
GGTTATGCACTTCCAACTCT+TGG 0.392524 1_1:-38167370 Msa0021410:CDS
GATAATGTGGGTTGGACTCT+TGG 0.393984 1_1:-38167391 Msa0021410:CDS
AACTGAGTGCAACTTGGCTT+GGG 0.394829 1_1:-38171027 Msa0021410:five_prime_UTR
TCTTTAGGGTCACTAGGAAT+AGG 0.396153 1_1:+38167223 None:intergenic
ACATACCAATAGGTAGATAA+AGG 0.397338 1_1:+38168163 None:intergenic
AAACTGAGTGCAACTTGGCT+TGG 0.397375 1_1:-38171028 Msa0021410:five_prime_UTR
ATTAATGTAGTAGCCATGAT+TGG 0.405581 1_1:+38165823 None:intergenic
AGATTAGTTTATTGGTTCTT+GGG 0.414050 1_1:-38165050 Msa0021410:exon
ATGGAACTGTTGATCTTAAA+GGG 0.414186 1_1:-38170881 Msa0021410:CDS
GCACCAATGGTGGAAATGTT+AGG 0.424088 1_1:+38167535 None:intergenic
TCAAATCCAAAACTGGTTGT+TGG 0.426483 1_1:-38170848 Msa0021410:CDS
TTGTAAAGATTATGCAAAGA+TGG 0.426548 1_1:-38165645 Msa0021410:CDS
TTCCTATGCCCATCCTTTGA+AGG 0.429082 1_1:+38165596 None:intergenic
ATTTGAGCAATCATTGTACT+AGG 0.430351 1_1:+38165799 None:intergenic
GAACCAATAAACTAATCTCT+TGG 0.436276 1_1:+38165055 None:intergenic
TTACAGCTAGTAGTGTTCTA+TGG 0.437692 1_1:-38167598 Msa0021410:CDS
TTCTACCAATGTCACCAATT+GGG 0.441799 1_1:-38168270 Msa0021410:CDS
AACTCTCATTCTTCAATTGG+TGG 0.444499 1_1:-38167471 Msa0021410:CDS
GTATGAGGTATTTGAGAGAA+TGG 0.453573 1_1:-38168363 Msa0021410:CDS
ACCACCTGAGTGTCATGAAA+TGG 0.453752 1_1:-38167650 Msa0021410:CDS
TTGTGGCTGCTATGAAGAAA+TGG 0.454963 1_1:-38167252 Msa0021410:CDS
TCCAGAAAGCATGAAAAGCT+TGG 0.466226 1_1:-38165374 Msa0021410:CDS
CTTCAAAACTGAGTGCAACT+TGG 0.467343 1_1:-38171033 Msa0021410:five_prime_UTR
CCAAATGGTACCAACCCAAT+TGG 0.470302 1_1:+38168256 None:intergenic
AGTGCTTGCAGAAGAATTGA+AGG 0.472723 1_1:-38165110 Msa0021410:CDS
CCAGAAAGCATGAAAAGCTT+GGG 0.478426 1_1:-38165373 Msa0021410:CDS
TGAAGGAGAGTAATTCCTCT+AGG 0.480380 1_1:+38165613 None:intergenic
TACACTCTAGCAGTAGGAAC+AGG 0.482514 1_1:-38167568 Msa0021410:CDS
TATAGACATAAAGTACCTAC+AGG 0.484411 1_1:-38167304 Msa0021410:CDS
TCAATGACTAGCTTAGGCAT+TGG 0.491759 1_1:-38165340 Msa0021410:CDS
TATGTTGCTGACGCCTACCT+TGG 0.492497 1_1:-38168212 Msa0021410:CDS
TTGGAAGAGTATGCAAAGAA+AGG 0.494172 1_1:-38167184 Msa0021410:CDS
ACAAATGTACCTAAACTTGC+TGG 0.498006 1_1:+38165712 None:intergenic
ACAACACTTGATAGAGGCAT+TGG 0.500358 1_1:-38165751 Msa0021410:CDS
GATAAGAATGATCCCAATCA+TGG 0.502771 1_1:-38165836 Msa0021410:CDS
AGTCTATATACAAGATAATG+TGG 0.504069 1_1:-38167404 Msa0021410:CDS
CTGAGGAACATGGTCACAAA+GGG 0.505036 1_1:-38165273 Msa0021410:CDS
AGTAAAATGAATATGCTCAA+TGG 0.506359 1_1:+38165472 None:intergenic
ATCAAATTGATCAGCACCAA+TGG 0.509830 1_1:+38167522 None:intergenic
GGTTAACATGGAAGAGGGAA+GGG 0.517761 1_1:-38170925 Msa0021410:exon
GAAGGAGAGTAATTCCTCTA+GGG 0.517835 1_1:+38165614 None:intergenic
AAGCCTAACATTTCCACCAT+TGG 0.518336 1_1:-38167538 Msa0021410:CDS
TATAGTTCTTTAGGGTCACT+AGG 0.526463 1_1:+38167217 None:intergenic
TCTTATTCAATGACTAGCTT+AGG 0.530851 1_1:-38165346 Msa0021410:CDS
CTTATACCTCAATGTGGGAG+TGG 0.531336 1_1:+38167144 None:intergenic
AATTACTCTCCTTCAAAGGA+TGG 0.536918 1_1:-38165605 Msa0021410:CDS
TCCCTTCACTAAAATGGCTA+AGG 0.542023 1_1:-38167278 Msa0021410:CDS
TTAATGTAGTAGCCATGATT+GGG 0.543126 1_1:+38165824 None:intergenic
CTTAGTGTAGCCAAAGAACA+TGG 0.548011 1_1:-38165520 Msa0021410:CDS
GGTACTTTATGTCTATAGAA+TGG 0.550764 1_1:+38167310 None:intergenic
CAACACTTGATAGAGGCATT+GGG 0.555650 1_1:-38165750 Msa0021410:CDS
TTGATTCCACTCCCACATTG+AGG 0.555903 1_1:-38167150 Msa0021410:intron
TTAATAAAGAAGCTTCATCA+AGG 0.556770 1_1:-38168305 Msa0021410:CDS
GTGAGTGAGTTCACACAAGA+TGG 0.557751 1_1:-38170900 Msa0021410:CDS
GATATTGCAAGTCCAAGAGT+TGG 0.562877 1_1:+38167358 None:intergenic
AAGACTAATTCAAGTACTAG+TGG 0.564192 1_1:-38165904 Msa0021410:CDS
ACTAATCTCTTGGAGTCACT+TGG 0.564581 1_1:+38165065 None:intergenic
AGGTTAACATGGAAGAGGGA+AGG 0.565286 1_1:-38170926 Msa0021410:exon
ACCAATGTCACCAATTGGGT+TGG 0.565849 1_1:-38168266 Msa0021410:CDS
TCTTGACACATGCCTTGTTG+AGG 0.569147 1_1:+38165923 None:intergenic
ACCAACCCAATTGGTGACAT+TGG 0.570728 1_1:+38168265 None:intergenic
CTCCTTCAAAGGATGGGCAT+AGG 0.570734 1_1:-38165598 Msa0021410:CDS
TAATATTGGAGTGATCCAAA+TGG 0.571433 1_1:+38168241 None:intergenic
CAGTAACAAAGGTCCAATAA+CGG 0.571576 1_1:+38168189 None:intergenic
GAGGAATTACTCTCCTTCAA+AGG 0.576375 1_1:-38165609 Msa0021410:CDS
AATGTACCTAAACTTGCTGG+TGG 0.578804 1_1:+38165715 None:intergenic
ATATACAAGATAATGTGGGT+TGG 0.583558 1_1:-38167399 Msa0021410:CDS
GAATGGCATACCAACAAAGA+AGG 0.585119 1_1:+38170815 None:intergenic
AGGAACATGGTCACAAAGGG+TGG 0.587585 1_1:-38165270 Msa0021410:CDS
TCTCCTCTACATGTGTAACT+GGG 0.590294 1_1:+38165869 None:intergenic
ATTACTCTCCTTCAAAGGAT+GGG 0.590754 1_1:-38165604 Msa0021410:CDS
TTCAGAACAAAACTCAGACA+TGG 0.594960 1_1:-38164987 Msa0021410:three_prime_UTR
CAAGGAACAACACTTGATAG+AGG 0.596087 1_1:-38165757 Msa0021410:CDS
GTCTATATACAAGATAATGT+GGG 0.599062 1_1:-38167403 Msa0021410:CDS
AATACACTATTTGTGAAGCA+AGG 0.599414 1_1:-38165775 Msa0021410:CDS
GGTCCAATAACGGCCAAGGT+AGG 0.599634 1_1:+38168199 None:intergenic
AAATTGATCAGCACCAATGG+TGG 0.600096 1_1:+38167525 None:intergenic
AATGGATGTTACAAAATGCA+AGG 0.601334 1_1:-38167632 Msa0021410:CDS
CAAAGGTCCAATAACGGCCA+AGG 0.604327 1_1:+38168195 None:intergenic
GATAAAGGAAGCAGTAACAA+AGG 0.605026 1_1:+38168178 None:intergenic
CATGGAGTAGTTGAAAATGG+AGG 0.610149 1_1:-38165502 Msa0021410:CDS
TAAAATGGCTAAGGTCATTG+TGG 0.611474 1_1:-38167269 Msa0021410:CDS
ACTCTAGCAGTAGGAACAGG+TGG 0.614419 1_1:-38167565 Msa0021410:CDS
GCACTCTACACTCTAGCAGT+AGG 0.615235 1_1:-38167574 Msa0021410:CDS
TCCATTTCATGACACTCAGG+TGG 0.620788 1_1:+38167649 None:intergenic
AATCAAGATGAGAAGCATTG+AGG 0.621145 1_1:+38165236 None:intergenic
GAACACTACTAGCTGTAATG+TGG 0.621214 1_1:+38167603 None:intergenic
ACTGAGGAACATGGTCACAA+AGG 0.621642 1_1:-38165274 Msa0021410:CDS
ATGCCCAGTTACACATGTAG+AGG 0.628339 1_1:-38165872 Msa0021410:CDS
TCACACATCACTGAGGAACA+TGG 0.632557 1_1:-38165283 Msa0021410:CDS
ACATCCATTTCATGACACTC+AGG 0.634209 1_1:+38167646 None:intergenic
TTAGTGAAGGGACTCCCTGT+AGG 0.634253 1_1:+38167289 None:intergenic
TGGAACTTATACCTCAATGT+GGG 0.647517 1_1:+38167139 None:intergenic
ATGGAACTTATACCTCAATG+TGG 0.655784 1_1:+38167138 None:intergenic
ACTAATTCAAGTACTAGTGG+AGG 0.670493 1_1:-38165901 Msa0021410:CDS
TGTATGCAGATTCCTCAACA+AGG 0.703011 1_1:-38165935 Msa0021410:intron
ATAGACATAAAGTACCTACA+GGG 0.722644 1_1:-38167303 Msa0021410:CDS
AACAGTTTCACACATCACTG+AGG 0.750967 1_1:-38165290 Msa0021410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATGTTGTTAAAAA+TGG - chr1_1:38165112-38165131 Msa0021410:CDS 10.0%
!!! GATTTTTTTTTTTTTAAAGA+TGG + chr1_1:38166723-38166742 None:intergenic 10.0%
!! TGAATAAATATCAATATTAT+AGG - chr1_1:38167216-38167235 Msa0021410:CDS 10.0%
!! ACAAAATTCTAAATATTTAT+AGG - chr1_1:38168067-38168086 Msa0021410:intron 10.0%
!!! AATATCTATCATAATATTTT+TGG - chr1_1:38168525-38168544 Msa0021410:intron 10.0%
!!! GAAAAATGAAATTTTAATAT+TGG - chr1_1:38169391-38169410 Msa0021410:intron 10.0%
!!! TATTACTTATTTTTTAATTG+TGG - chr1_1:38169678-38169697 Msa0021410:intron 10.0%
!! AAAATTGTTAAAAATGTAAG+TGG - chr1_1:38165210-38165229 Msa0021410:CDS 15.0%
!! TCTTAAAATTGTAAATGATA+CGG + chr1_1:38165577-38165596 None:intergenic 15.0%
!!! TACAATTTTAAGAAAGTAAT+TGG - chr1_1:38165584-38165603 Msa0021410:CDS 15.0%
!! AAAAAGAACATTTATAATGA+CGG - chr1_1:38165999-38166018 Msa0021410:intron 15.0%
!!! CATTTTTATCTAAAATAACA+AGG - chr1_1:38166158-38166177 Msa0021410:intron 15.0%
!! TATTATTATAGTGGTATATT+AGG + chr1_1:38166402-38166421 None:intergenic 15.0%
!! ATAAGGAATTATTATTATAG+TGG + chr1_1:38166411-38166430 None:intergenic 15.0%
!! AAAAAAACATCAATAATTGT+TGG + chr1_1:38167060-38167079 None:intergenic 15.0%
!!! TTTTTACAAAAAAGAATAAC+TGG + chr1_1:38167091-38167110 None:intergenic 15.0%
!! TCAATATTATAGGTATATTT+AGG - chr1_1:38167226-38167245 Msa0021410:CDS 15.0%
!!! GTATGATTTTATTTTTTAGA+GGG + chr1_1:38167819-38167838 None:intergenic 15.0%
!!! AGTATGATTTTATTTTTTAG+AGG + chr1_1:38167820-38167839 None:intergenic 15.0%
!!! AATACATATGGAAAATTTTA+CGG + chr1_1:38167912-38167931 None:intergenic 15.0%
!!! AAATGTGATTTTATTTTGTA+AGG - chr1_1:38168038-38168057 Msa0021410:intron 15.0%
!! TGTATTTGTGAAAAAAAAAT+AGG + chr1_1:38168767-38168786 None:intergenic 15.0%
!!! TTATTATTTTTCTTAAGTTG+CGG + chr1_1:38169138-38169157 None:intergenic 15.0%
!! AAATACTCATAAAAACTTAA+TGG - chr1_1:38169183-38169202 Msa0021410:intron 15.0%
!!! TGATTCGACATTTTTTTAAA+CGG - chr1_1:38165138-38165157 Msa0021410:CDS 20.0%
!! AATATGTGTAATTAATGCAT+AGG + chr1_1:38165414-38165433 None:intergenic 20.0%
!! ATAATATATCTTGCAAATTG+TGG + chr1_1:38165543-38165562 None:intergenic 20.0%
!! TAAATAAGTGTGTATATTTG+TGG - chr1_1:38165698-38165717 Msa0021410:CDS 20.0%
!!! TACTAGTTTTTTAAATGAAG+AGG - chr1_1:38166662-38166681 Msa0021410:intron 20.0%
!! ATGTATGTAGATTCAATAAT+TGG + chr1_1:38167120-38167139 None:intergenic 20.0%
!! TGATGTTACATCATTAAAAA+TGG - chr1_1:38167372-38167391 Msa0021410:CDS 20.0%
!! AATATAACAAGTTGTGAAAA+AGG - chr1_1:38167405-38167424 Msa0021410:CDS 20.0%
!! ATAAATTAAGACATACCAAT+AGG + chr1_1:38167716-38167735 None:intergenic 20.0%
!! TTTATTATCTAGTGTGAAAT+AGG - chr1_1:38167731-38167750 Msa0021410:intron 20.0%
!! TTATTATCTAGTGTGAAATA+GGG - chr1_1:38167732-38167751 Msa0021410:intron 20.0%
!!! TTTGACAGAAAATTTTTACA+GGG + chr1_1:38167972-38167991 None:intergenic 20.0%
!!! TTTTGACAGAAAATTTTTAC+AGG + chr1_1:38167973-38167992 None:intergenic 20.0%
!! AAATAGGGTTATATTTGAAA+GGG + chr1_1:38168110-38168129 None:intergenic 20.0%
!! AAAATAGGGTTATATTTGAA+AGG + chr1_1:38168111-38168130 None:intergenic 20.0%
!!! ATATAACCCTATTTTATTGT+TGG - chr1_1:38168116-38168135 Msa0021410:intron 20.0%
!!! TATAACCCTATTTTATTGTT+GGG - chr1_1:38168117-38168136 Msa0021410:intron 20.0%
!! TAAAACAGAATTTGCAAAAA+GGG + chr1_1:38168443-38168462 None:intergenic 20.0%
!! AATAGGTATTAAATCAAACA+TGG + chr1_1:38168750-38168769 None:intergenic 20.0%
!! CATAGACTGTATTAAAAATA+TGG + chr1_1:38169362-38169381 None:intergenic 20.0%
!!! AATGCCTCAAATTTTTTTTT+TGG - chr1_1:38169763-38169782 Msa0021410:intron 20.0%
!! TATAAGTTTAGGAAAATTTG+AGG + chr1_1:38169870-38169889 None:intergenic 20.0%
!! AACAATGATAGTATAAGTTT+AGG + chr1_1:38169881-38169900 None:intergenic 20.0%
!! CATAATTCATATAGTGATTA+TGG - chr1_1:38170294-38170313 Msa0021410:intron 20.0%
!!! TTTGTTCTGAAAAATACATT+TGG + chr1_1:38170870-38170889 None:intergenic 20.0%
! CAAAAATAAATAGATGAGAG+AGG + chr1_1:38165083-38165102 None:intergenic 25.0%
! TTGTTAAAAATGTAAGTGGA+AGG - chr1_1:38165214-38165233 Msa0021410:CDS 25.0%
! TCAATGAAAATGCCAAAAAT+TGG - chr1_1:38165298-38165317 Msa0021410:CDS 25.0%
! TGCCAAAAATTGGATTTAAA+CGG - chr1_1:38165308-38165327 Msa0021410:CDS 25.0%
! AAATTGTAAATGATACGGAT+GGG + chr1_1:38165572-38165591 None:intergenic 25.0%
! AAAATTGTAAATGATACGGA+TGG + chr1_1:38165573-38165592 None:intergenic 25.0%
! AAGAAAGTAATTGGTTATGT+TGG - chr1_1:38165593-38165612 Msa0021410:CDS 25.0%
! TAACAACTAGTGAAGTAATT+AGG - chr1_1:38165660-38165679 Msa0021410:CDS 25.0%
!!! ATTATTTTTTTCTTTCGCAC+CGG + chr1_1:38165911-38165930 None:intergenic 25.0%
! TATATATATACCCTAAAGTG+AGG - chr1_1:38165940-38165959 Msa0021410:intron 25.0%
!!! TTTCTAAAATCCTCACTTTA+GGG + chr1_1:38165953-38165972 None:intergenic 25.0%
!!! ATTTCTAAAATCCTCACTTT+AGG + chr1_1:38165954-38165973 None:intergenic 25.0%
!!! ATGAAGTTGAATTTTAGCAT+AGG + chr1_1:38166141-38166160 None:intergenic 25.0%
! CACATATCATGAATACATTA+AGG - chr1_1:38166205-38166224 Msa0021410:intron 25.0%
! ATAGATGAGTAAATTCTTGA+TGG - chr1_1:38166318-38166337 Msa0021410:intron 25.0%
! GTATATTAGGAATTCTTTCT+TGG + chr1_1:38166389-38166408 None:intergenic 25.0%
!! CAGATGAACAAGATTTTATA+AGG + chr1_1:38166428-38166447 None:intergenic 25.0%
! CTTATAAAATCTTGTTCATC+TGG - chr1_1:38166426-38166445 Msa0021410:intron 25.0%
! TTTATTTGATACTAGTACCA+TGG + chr1_1:38166689-38166708 None:intergenic 25.0%
!! TTCTATGTGGTACTTTTATT+CGG + chr1_1:38166918-38166937 None:intergenic 25.0%
! ACCAACTATCATATCTTAAA+TGG - chr1_1:38166938-38166957 Msa0021410:intron 25.0%
!! ACCATTTAAGATATGATAGT+TGG + chr1_1:38166942-38166961 None:intergenic 25.0%
! ATCATATCTTAAATGGTCAT+TGG - chr1_1:38166945-38166964 Msa0021410:intron 25.0%
! CAAAAAAGAATAACTGGATT+GGG + chr1_1:38167085-38167104 None:intergenic 25.0%
! ACAAAAAAGAATAACTGGAT+TGG + chr1_1:38167086-38167105 None:intergenic 25.0%
! ACGATAAAAATGAATCAACA+TGG + chr1_1:38167326-38167345 None:intergenic 25.0%
! TGTTACATCATTAAAAATGG+AGG - chr1_1:38167375-38167394 Msa0021410:CDS 25.0%
! CATAAACCATTATGTGTTAT+TGG - chr1_1:38167431-38167450 Msa0021410:CDS 25.0%
!! TGACAATGAAATGTGTATTT+TGG - chr1_1:38167474-38167493 Msa0021410:CDS 25.0%
! TTAATAAAGAAGCTTCATCA+AGG - chr1_1:38167561-38167580 Msa0021410:CDS 25.0%
!! TACATACGGAAAATTTTACA+AGG + chr1_1:38167881-38167900 None:intergenic 25.0%
!! TTACGGACTAAAAATACATA+CGG + chr1_1:38167895-38167914 None:intergenic 25.0%
! ACAAGGACTAAAAATACATA+TGG + chr1_1:38167924-38167943 None:intergenic 25.0%
!! TGTTGAAGGAAAATTTTACA+AGG + chr1_1:38167941-38167960 None:intergenic 25.0%
!! CATTTTCCTTTAGCATTTTA+GGG + chr1_1:38168004-38168023 None:intergenic 25.0%
!! ACATTTTCCTTTAGCATTTT+AGG + chr1_1:38168005-38168024 None:intergenic 25.0%
! GAAAGGGTTAATTAAGTAAA+TGG + chr1_1:38168094-38168113 None:intergenic 25.0%
! ATAAACTCTCATTCTTCAAT+TGG - chr1_1:38168392-38168411 Msa0021410:intron 25.0%
! CTAAAACAGAATTTGCAAAA+AGG + chr1_1:38168444-38168463 None:intergenic 25.0%
! AGTCTATATACAAGATAATG+TGG - chr1_1:38168462-38168481 Msa0021410:intron 25.0%
! GTCTATATACAAGATAATGT+GGG - chr1_1:38168463-38168482 Msa0021410:intron 25.0%
!!! TCTATCATAATATTTTTGGC+AGG - chr1_1:38168529-38168548 Msa0021410:intron 25.0%
! CAAGTTCATATAGTTCTTTA+GGG + chr1_1:38168660-38168679 None:intergenic 25.0%
! TCAAGTTCATATAGTTCTTT+AGG + chr1_1:38168661-38168680 None:intergenic 25.0%
! AGAACTATATGAACTTGATT+TGG - chr1_1:38168663-38168682 Msa0021410:intron 25.0%
! AAAAGAAAATGCATGTCATT+CGG - chr1_1:38168960-38168979 Msa0021410:intron 25.0%
!!! AAACCAAATGAGATTTTTTG+CGG + chr1_1:38169041-38169060 None:intergenic 25.0%
! TTTAATACAGTCTATGTTGT+TGG - chr1_1:38169366-38169385 Msa0021410:intron 25.0%
! TTAATACAGTCTATGTTGTT+GGG - chr1_1:38169367-38169386 Msa0021410:intron 25.0%
!! ATAGATGTTATGTTGGTAAA+TGG - chr1_1:38169739-38169758 Msa0021410:intron 25.0%
! ACCACCAAAAAAAAAATTTG+AGG + chr1_1:38169770-38169789 None:intergenic 25.0%
! GATCATTCTTATCATTTGTT+TGG + chr1_1:38170023-38170042 None:intergenic 25.0%
! TTGTAAAGATTATGCAAAGA+TGG - chr1_1:38170221-38170240 Msa0021410:intron 25.0%
! AGTAAAATGAATATGCTCAA+TGG + chr1_1:38170397-38170416 None:intergenic 25.0%
! TTCCCATAAGTAAAAATTGA+GGG + chr1_1:38170420-38170439 None:intergenic 25.0%
!! TGATTACTACTATGCATTTT+TGG - chr1_1:38170648-38170667 Msa0021410:intron 25.0%
!!! AGATTAGTTTATTGGTTCTT+GGG - chr1_1:38170816-38170835 Msa0021410:intron 25.0%
! TTTTTGTTCTCCCTCAAAAA+AGG - chr1_1:38164920-38164939 Msa0021410:three_prime_UTR 30.0%
!!! TCCATGTTAACCTTTTTTGA+GGG + chr1_1:38164933-38164952 None:intergenic 30.0%
!!! TTCCATGTTAACCTTTTTTG+AGG + chr1_1:38164934-38164953 None:intergenic 30.0%
AAAAAAGGTTAACATGGAAG+AGG - chr1_1:38164935-38164954 Msa0021410:three_prime_UTR 30.0%
AAAAAGGTTAACATGGAAGA+GGG - chr1_1:38164936-38164955 Msa0021410:three_prime_UTR 30.0%
ATGGAACTGTTGATCTTAAA+GGG - chr1_1:38164985-38165004 Msa0021410:three_prime_UTR 30.0%
TTAAAAATGTAAGTGGAAGG+AGG - chr1_1:38165217-38165236 Msa0021410:CDS 30.0%
GCCAAAAATTGGATTTAAAC+GGG - chr1_1:38165309-38165328 Msa0021410:CDS 30.0%
! ACCCGTTTAAATCCAATTTT+TGG + chr1_1:38165313-38165332 None:intergenic 30.0%
CACTAGTTAAGATCTCTAAA+GGG + chr1_1:38165451-38165470 None:intergenic 30.0%
AAATGTTAACCAATGCTCTA+GGG + chr1_1:38165475-38165494 None:intergenic 30.0%
GGTTATTGCAAAATGATGAA+GGG + chr1_1:38165498-38165517 None:intergenic 30.0%
TGGTTATTGCAAAATGATGA+AGG + chr1_1:38165499-38165518 None:intergenic 30.0%
TATATAAGAACCAAGTTGCT+TGG - chr1_1:38165752-38165771 Msa0021410:CDS 30.0%
ATATAAGAACCAAGTTGCTT+GGG - chr1_1:38165753-38165772 Msa0021410:CDS 30.0%
AAGAACATTTATAATGACGG+AGG - chr1_1:38166002-38166021 Msa0021410:intron 30.0%
! AGAACATTTATAATGACGGA+GGG - chr1_1:38166003-38166022 Msa0021410:intron 30.0%
TCATCTATTAATTTCGAACG+AGG + chr1_1:38166306-38166325 None:intergenic 30.0%
! TGTGACACTTTTCTTTTGAA+AGG + chr1_1:38166639-38166658 None:intergenic 30.0%
!! TTTCAAAAGAAAAGTGTCAC+AGG - chr1_1:38166638-38166657 Msa0021410:intron 30.0%
!! TTCAAAAGAAAAGTGTCACA+GGG - chr1_1:38166639-38166658 Msa0021410:intron 30.0%
! TTTTTAAATGAAGAGGTCCA+TGG - chr1_1:38166669-38166688 Msa0021410:intron 30.0%
GGAAAATTCGAGTATTTAAC+GGG + chr1_1:38166895-38166914 None:intergenic 30.0%
GGGAAAATTCGAGTATTTAA+CGG + chr1_1:38166896-38166915 None:intergenic 30.0%
! TCTATGTGGTACTTTTATTC+GGG + chr1_1:38166917-38166936 None:intergenic 30.0%
! TATGATAGTTGGTTTCTATG+TGG + chr1_1:38166931-38166950 None:intergenic 30.0%
GTGTAATTGTTATAGATTGG+CGG - chr1_1:38166996-38167015 Msa0021410:intron 30.0%
TTTGAGAGAATGGCTTATTA+TGG - chr1_1:38167513-38167532 Msa0021410:CDS 30.0%
TTGAGAGAATGGCTTATTAT+GGG - chr1_1:38167514-38167533 Msa0021410:CDS 30.0%
TAATATTGGAGTGATCCAAA+TGG + chr1_1:38167628-38167647 None:intergenic 30.0%
ATTTGGATCACTCCAATATT+AGG - chr1_1:38167627-38167646 Msa0021410:CDS 30.0%
ACATACCAATAGGTAGATAA+AGG + chr1_1:38167706-38167725 None:intergenic 30.0%
ACAGGGATTAAAAATGTTGA+AGG + chr1_1:38167955-38167974 None:intergenic 30.0%
! TTTTGTCCCTAAAATGCTAA+AGG - chr1_1:38167995-38168014 Msa0021410:intron 30.0%
TGCTAAAGGAAAATGTTACA+TGG - chr1_1:38168009-38168028 Msa0021410:intron 30.0%
ATTGGCCCAACAATAAAATA+GGG + chr1_1:38168125-38168144 None:intergenic 30.0%
ATTCAAATGTGACCTCAAAT+TGG - chr1_1:38168146-38168165 Msa0021410:intron 30.0%
AATGGATGTTACAAAATGCA+AGG - chr1_1:38168234-38168253 Msa0021410:CDS 30.0%
ATATACAAGATAATGTGGGT+TGG - chr1_1:38168467-38168486 Msa0021410:intron 30.0%
GGTACTTTATGTCTATAGAA+TGG + chr1_1:38168559-38168578 None:intergenic 30.0%
! TATAGACATAAAGTACCTAC+AGG - chr1_1:38168562-38168581 Msa0021410:intron 30.0%
! ATAGACATAAAGTACCTACA+GGG - chr1_1:38168563-38168582 Msa0021410:intron 30.0%
TATTAAACCTCCAATTCCTA+GGG + chr1_1:38168941-38168960 None:intergenic 30.0%
TTATTAAACCTCCAATTCCT+AGG + chr1_1:38168942-38168961 None:intergenic 30.0%
!!! AATGAGATTTTTTGCGGTTT+CGG + chr1_1:38169035-38169054 None:intergenic 30.0%
AAACCGCAAAAAATCTCATT+TGG - chr1_1:38169035-38169054 Msa0021410:intron 30.0%
GCAAAAAATCTCATTTGGTT+TGG - chr1_1:38169040-38169059 Msa0021410:intron 30.0%
!!! CAATTTTTTACTCAACCACA+TGG - chr1_1:38169075-38169094 Msa0021410:intron 30.0%
!! ATTTTTCTTAAGTTGCGGTT+TGG + chr1_1:38169133-38169152 None:intergenic 30.0%
TTTGTCTACGTGACATATAT+AGG + chr1_1:38169166-38169185 None:intergenic 30.0%
! AGATAAAAAAGCATGTGGTT+CGG + chr1_1:38169582-38169601 None:intergenic 30.0%
!!! TGCTTTTTTATCTCACGATT+AGG - chr1_1:38169589-38169608 Msa0021410:intron 30.0%
CAACTAGATAGATGTTATGT+TGG - chr1_1:38169732-38169751 Msa0021410:intron 30.0%
!!! GCCTCAAATTTTTTTTTTGG+TGG - chr1_1:38169766-38169785 Msa0021410:intron 30.0%
!!! AATTTTTTTTTTGGTGGTCG+AGG - chr1_1:38169772-38169791 Msa0021410:intron 30.0%
GACAATGCATAATATATGCA+GGG + chr1_1:38169811-38169830 None:intergenic 30.0%
AAGACTAATTCAAGTACTAG+TGG - chr1_1:38169962-38169981 Msa0021410:intron 30.0%
TTAATGTAGTAGCCATGATT+GGG + chr1_1:38170045-38170064 None:intergenic 30.0%
ATTAATGTAGTAGCCATGAT+TGG + chr1_1:38170046-38170065 None:intergenic 30.0%
ATTTGAGCAATCATTGTACT+AGG + chr1_1:38170070-38170089 None:intergenic 30.0%
AATACACTATTTGTGAAGCA+AGG - chr1_1:38170091-38170110 Msa0021410:intron 30.0%
CAACTTTCACTGAAAGATAT+AGG - chr1_1:38170323-38170342 Msa0021410:intron 30.0%
! ACTCCCTCAATTTTTACTTA+TGG - chr1_1:38170414-38170433 Msa0021410:intron 30.0%
! CTCCCTCAATTTTTACTTAT+GGG - chr1_1:38170415-38170434 Msa0021410:intron 30.0%
GTTCCCATAAGTAAAAATTG+AGG + chr1_1:38170421-38170440 None:intergenic 30.0%
!! TCTTATTCAATGACTAGCTT+AGG - chr1_1:38170520-38170539 Msa0021410:intron 30.0%
!! ACTCCAAGAGATTAGTTTAT+TGG - chr1_1:38170808-38170827 Msa0021410:intron 30.0%
GAACCAATAAACTAATCTCT+TGG + chr1_1:38170814-38170833 None:intergenic 30.0%
!! GAGATTAGTTTATTGGTTCT+TGG - chr1_1:38170815-38170834 Msa0021410:intron 30.0%
TCCCTCAAAAAAGGTTAACA+TGG - chr1_1:38164929-38164948 Msa0021410:three_prime_UTR 35.0%
GATGGAACTGTTGATCTTAA+AGG - chr1_1:38164984-38165003 Msa0021410:three_prime_UTR 35.0%
!!! CCAGTTTTGGATTTGAGAAT+AGG + chr1_1:38165014-38165033 None:intergenic 35.0%
CCTATTCTCAAATCCAAAAC+TGG - chr1_1:38165011-38165030 Msa0021410:three_prime_UTR 35.0%
TCAAATCCAAAACTGGTTGT+TGG - chr1_1:38165018-38165037 Msa0021410:three_prime_UTR 35.0%
! AAAGCTTGTTCCTTCTTTGT+TGG - chr1_1:38165041-38165060 Msa0021410:three_prime_UTR 35.0%
AAATAGATGAGAGAGGAAGA+GGG + chr1_1:38165076-38165095 None:intergenic 35.0%
TAAATAGATGAGAGAGGAAG+AGG + chr1_1:38165077-38165096 None:intergenic 35.0%
AGAATGCCTTGTGGTATATA+AGG - chr1_1:38165246-38165265 Msa0021410:CDS 35.0%
GGTATATAAGGATGGTCTAT+TGG - chr1_1:38165258-38165277 Msa0021410:CDS 35.0%
!! GAAATCCTTAAAAAGTGCTC+CGG + chr1_1:38165347-38165366 None:intergenic 35.0%
GCACTAGTTAAGATCTCTAA+AGG + chr1_1:38165452-38165471 None:intergenic 35.0%
AATGTTAACCAATGCTCTAG+GGG + chr1_1:38165474-38165493 None:intergenic 35.0%
GAAATGTTAACCAATGCTCT+AGG + chr1_1:38165476-38165495 None:intergenic 35.0%
! AATTGTGGCTTGTCATTACT+AGG + chr1_1:38165528-38165547 None:intergenic 35.0%
GGGTACTACTCAAAATACTT+CGG - chr1_1:38166023-38166042 Msa0021410:intron 35.0%
GGTACTACTCAAAATACTTC+GGG - chr1_1:38166024-38166043 Msa0021410:intron 35.0%
TCATGAATACATTAAGGACC+TGG - chr1_1:38166211-38166230 Msa0021410:intron 35.0%
GTATGTATGATGAGATATCC+AGG + chr1_1:38166232-38166251 None:intergenic 35.0%
TGAGTAAATTCTTGATGGAG+AGG - chr1_1:38166323-38166342 Msa0021410:intron 35.0%
TAAATTCTTGATGGAGAGGT+AGG - chr1_1:38166327-38166346 Msa0021410:intron 35.0%
!!! TTTTTTTGAAAGGAGTCCCT+AGG - chr1_1:38166575-38166594 Msa0021410:intron 35.0%
! ATGGATCACCTTCTTTTTGA+AGG - chr1_1:38166607-38166626 Msa0021410:intron 35.0%
! TGGATCACCTTCTTTTTGAA+GGG - chr1_1:38166608-38166627 Msa0021410:intron 35.0%
! CTATGTGGTACTTTTATTCG+GGG + chr1_1:38166916-38166935 None:intergenic 35.0%
GGGGTGTAATTGTTATAGAT+TGG - chr1_1:38166993-38167012 Msa0021410:intron 35.0%
TCCAAAAGTCGTCTTAGATT+TGG - chr1_1:38167291-38167310 Msa0021410:CDS 35.0%
!! ACCAAATCTAAGACGACTTT+TGG + chr1_1:38167295-38167314 None:intergenic 35.0%
TGTGGTCCAATAACACATAA+TGG + chr1_1:38167440-38167459 None:intergenic 35.0%
GTCAACGATATGATTCAATG+TGG + chr1_1:38167458-38167477 None:intergenic 35.0%
! GTATGAGGTATTTGAGAGAA+TGG - chr1_1:38167503-38167522 Msa0021410:CDS 35.0%
TTCTACCAATGTCACCAATT+GGG - chr1_1:38167596-38167615 Msa0021410:CDS 35.0%
GCAACATAAGCACCTAATAT+TGG + chr1_1:38167642-38167661 None:intergenic 35.0%
CAGTAACAAAGGTCCAATAA+CGG + chr1_1:38167680-38167699 None:intergenic 35.0%
GATAAAGGAAGCAGTAACAA+AGG + chr1_1:38167691-38167710 None:intergenic 35.0%
TGCTTCCTTTATCTACCTAT+TGG - chr1_1:38167698-38167717 Msa0021410:intron 35.0%
CATTGGCCCAACAATAAAAT+AGG + chr1_1:38168126-38168145 None:intergenic 35.0%
TGAGGTCACATTTGAATCAT+TGG + chr1_1:38168143-38168162 None:intergenic 35.0%
TTACAGCTAGTAGTGTTCTA+TGG - chr1_1:38168268-38168287 Msa0021410:CDS 35.0%
ATCAAATTGATCAGCACCAA+TGG + chr1_1:38168347-38168366 None:intergenic 35.0%
AACTCTCATTCTTCAATTGG+TGG - chr1_1:38168395-38168414 Msa0021410:intron 35.0%
TGGATGTTCAGCATCTTTAT+TGG - chr1_1:38168415-38168434 Msa0021410:intron 35.0%
GGATGTTCAGCATCTTTATT+GGG - chr1_1:38168416-38168435 Msa0021410:intron 35.0%
!! ACCTTAGCCATTTTAGTGAA+GGG + chr1_1:38168592-38168611 None:intergenic 35.0%
TAAAATGGCTAAGGTCATTG+TGG - chr1_1:38168597-38168616 Msa0021410:intron 35.0%
!! TATAGTTCTTTAGGGTCACT+AGG + chr1_1:38168652-38168671 None:intergenic 35.0%
! TTGGAAGAGTATGCAAAGAA+AGG - chr1_1:38168682-38168701 Msa0021410:intron 35.0%
TGGAACTTATACCTCAATGT+GGG + chr1_1:38168730-38168749 None:intergenic 35.0%
ATGGAACTTATACCTCAATG+TGG + chr1_1:38168731-38168750 None:intergenic 35.0%
TGAAACTTAGTCGAATCACT+TGG + chr1_1:38168809-38168828 None:intergenic 35.0%
! TGGTAAGTAAAGGTTGGTTA+AGG + chr1_1:38168884-38168903 None:intergenic 35.0%
GAAAGAGGACTCTAGTAAAT+TGG + chr1_1:38168919-38168938 None:intergenic 35.0%
TATGTCTTGTGTTGTATGCT+AGG - chr1_1:38168983-38169002 Msa0021410:intron 35.0%
ATGTCTTGTGTTGTATGCTA+GGG - chr1_1:38168984-38169003 Msa0021410:intron 35.0%
!!! ATTTTTTGCGGTTTCGGTTT+GGG + chr1_1:38169029-38169048 None:intergenic 35.0%
AAATCGCAAACAAAACCATG+TGG + chr1_1:38169093-38169112 None:intergenic 35.0%
CAAATCAATGCAACTTGGAT+TGG + chr1_1:38169524-38169543 None:intergenic 35.0%
!! CAATCCAAGTTGCATTGATT+TGG - chr1_1:38169522-38169541 Msa0021410:intron 35.0%
CAAACCAAATCAATGCAACT+TGG + chr1_1:38169529-38169548 None:intergenic 35.0%
!! CAAGTTGCATTGATTTGGTT+TGG - chr1_1:38169527-38169546 Msa0021410:intron 35.0%
! TCGTGAGATAAAAAAGCATG+TGG + chr1_1:38169587-38169606 None:intergenic 35.0%
TGGACTTATCATGTCAAGTT+TGG - chr1_1:38169698-38169717 Msa0021410:intron 35.0%
GGACAATGCATAATATATGC+AGG + chr1_1:38169812-38169831 None:intergenic 35.0%
ACTAATTCAAGTACTAGTGG+AGG - chr1_1:38169965-38169984 Msa0021410:intron 35.0%
GATAAGAATGATCCCAATCA+TGG - chr1_1:38170030-38170049 Msa0021410:intron 35.0%
AAAATTCCACCAGCAAGTTT+AGG - chr1_1:38170145-38170164 Msa0021410:intron 35.0%
ACAAATGTACCTAAACTTGC+TGG + chr1_1:38170157-38170176 None:intergenic 35.0%
AATTACTCTCCTTCAAAGGA+TGG - chr1_1:38170261-38170280 Msa0021410:intron 35.0%
ATTACTCTCCTTCAAAGGAT+GGG - chr1_1:38170262-38170281 Msa0021410:intron 35.0%
TTCAACTACTCCATGTTCTT+TGG + chr1_1:38170359-38170378 None:intergenic 35.0%
GAACATGGAGTAGTTGAAAA+TGG - chr1_1:38170361-38170380 Msa0021410:intron 35.0%
!! AACAGCTGATGCATTTTTAG+AGG - chr1_1:38170438-38170457 Msa0021410:intron 35.0%
!! AATCAAGATGAGAAGCATTG+AGG + chr1_1:38170633-38170652 None:intergenic 35.0%
! TTCTTCTGCAAGCACTTTTA+TGG + chr1_1:38170752-38170771 None:intergenic 35.0%
TTCAGAACAAAACTCAGACA+TGG - chr1_1:38170879-38170898 Msa0021410:CDS 35.0%
! AGCTTTCCAACAACCAGTTT+TGG + chr1_1:38165027-38165046 None:intergenic 40.0%
GAATGGCATACCAACAAAGA+AGG + chr1_1:38165054-38165073 None:intergenic 40.0%
TGCCTTGTGGTATATAAGGA+TGG - chr1_1:38165250-38165269 Msa0021410:CDS 40.0%
GACCATCCTTATATACCACA+AGG + chr1_1:38165255-38165274 None:intergenic 40.0%
TTGTCATTACTAGGTCGTTG+TGG + chr1_1:38165519-38165538 None:intergenic 40.0%
GTTTCATACCCATCAAAGGT+GGG + chr1_1:38165889-38165908 None:intergenic 40.0%
! ACCTTTGATGGGTATGAAAC+CGG - chr1_1:38165889-38165908 Msa0021410:CDS 40.0%
!! GGATCACCTTCTTTTTGAAG+GGG - chr1_1:38166609-38166628 Msa0021410:intron 40.0%
AAATCAATCCATCCAACCCT+AGG - chr1_1:38166738-38166757 Msa0021410:intron 40.0%
GAAATTTGCGTGAGATCCTA+GGG + chr1_1:38166757-38166776 None:intergenic 40.0%
AGAAATTTGCGTGAGATCCT+AGG + chr1_1:38166758-38166777 None:intergenic 40.0%
TTCGAGTATTTAACGGGACA+AGG + chr1_1:38166889-38166908 None:intergenic 40.0%
! TCATTGGTTAGATCCCCATT+GGG - chr1_1:38166961-38166980 Msa0021410:intron 40.0%
!!! CGACTTTTGGAACAAGAATG+TGG + chr1_1:38167282-38167301 None:intergenic 40.0%
!!! GTATTTTGGTGCAGTGTATG+AGG - chr1_1:38167488-38167507 Msa0021410:CDS 40.0%
CTTCTACCAATGTCACCAAT+TGG - chr1_1:38167595-38167614 Msa0021410:CDS 40.0%
AAATGTGACCTCAAATTGGC+AGG - chr1_1:38168150-38168169 Msa0021410:intron 40.0%
AATGTGACCTCAAATTGGCA+GGG - chr1_1:38168151-38168170 Msa0021410:intron 40.0%
ACATCCATTTCATGACACTC+AGG + chr1_1:38168223-38168242 None:intergenic 40.0%
GAACACTACTAGCTGTAATG+TGG + chr1_1:38168266-38168285 None:intergenic 40.0%
AAGCCTAACATTTCCACCAT+TGG - chr1_1:38168328-38168347 Msa0021410:CDS 40.0%
AAATTGATCAGCACCAATGG+TGG + chr1_1:38168344-38168363 None:intergenic 40.0%
GATATTGCAAGTCCAAGAGT+TGG + chr1_1:38168511-38168530 None:intergenic 40.0%
TCCCTTCACTAAAATGGCTA+AGG - chr1_1:38168588-38168607 Msa0021410:intron 40.0%
!! GACCTTAGCCATTTTAGTGA+AGG + chr1_1:38168593-38168612 None:intergenic 40.0%
TTGTGGCTGCTATGAAGAAA+TGG - chr1_1:38168614-38168633 Msa0021410:intron 40.0%
!! TCTTTAGGGTCACTAGGAAT+AGG + chr1_1:38168646-38168665 None:intergenic 40.0%
! CTCTGTTGGTAAGTAAAGGT+TGG + chr1_1:38168890-38168909 None:intergenic 40.0%
! CTTGCTCTGTTGGTAAGTAA+AGG + chr1_1:38168894-38168913 None:intergenic 40.0%
! TAAATTGGAGCTTGCTCTGT+TGG + chr1_1:38168904-38168923 None:intergenic 40.0%
TGTCTTGTGTTGTATGCTAG+GGG - chr1_1:38168985-38169004 Msa0021410:intron 40.0%
!!! GGTTTCGGTTTGGGTTTTTT+CGG + chr1_1:38169020-38169039 None:intergenic 40.0%
!!! GATTTTTTGCGGTTTCGGTT+TGG + chr1_1:38169030-38169049 None:intergenic 40.0%
!! TCTTAAGTTGCGGTTTGGTT+TGG + chr1_1:38169128-38169147 None:intergenic 40.0%
TTGCCATGTTGCATTCAGTA+GGG + chr1_1:38169653-38169672 None:intergenic 40.0%
TTTGCCATGTTGCATTCAGT+AGG + chr1_1:38169654-38169673 None:intergenic 40.0%
TGTATGCAGATTCCTCAACA+AGG - chr1_1:38169931-38169950 Msa0021410:intron 40.0%
TCTCCTCTACATGTGTAACT+GGG + chr1_1:38170000-38170019 None:intergenic 40.0%
CAAGGAACAACACTTGATAG+AGG - chr1_1:38170109-38170128 Msa0021410:intron 40.0%
! ACAACACTTGATAGAGGCAT+TGG - chr1_1:38170115-38170134 Msa0021410:intron 40.0%
!! CAACACTTGATAGAGGCATT+GGG - chr1_1:38170116-38170135 Msa0021410:intron 40.0%
!! AATGTACCTAAACTTGCTGG+TGG + chr1_1:38170154-38170173 None:intergenic 40.0%
!! AGATGGACTAAAAACCCTAG+AGG - chr1_1:38170238-38170257 Msa0021410:intron 40.0%
GAAGGAGAGTAATTCCTCTA+GGG + chr1_1:38170255-38170274 None:intergenic 40.0%
TGAAGGAGAGTAATTCCTCT+AGG + chr1_1:38170256-38170275 None:intergenic 40.0%
GAGGAATTACTCTCCTTCAA+AGG - chr1_1:38170257-38170276 Msa0021410:intron 40.0%
CTTAGTGTAGCCAAAGAACA+TGG - chr1_1:38170346-38170365 Msa0021410:intron 40.0%
CATGGAGTAGTTGAAAATGG+AGG - chr1_1:38170364-38170383 Msa0021410:intron 40.0%
! TCCAGAAAGCATGAAAAGCT+TGG - chr1_1:38170492-38170511 Msa0021410:intron 40.0%
! CCAGAAAGCATGAAAAGCTT+GGG - chr1_1:38170493-38170512 Msa0021410:intron 40.0%
!! TCAATGACTAGCTTAGGCAT+TGG - chr1_1:38170526-38170545 Msa0021410:intron 40.0%
AACAGTTTCACACATCACTG+AGG - chr1_1:38170576-38170595 Msa0021410:intron 40.0%
AGTGCTTGCAGAAGAATTGA+AGG - chr1_1:38170756-38170775 Msa0021410:intron 40.0%
ACTAATCTCTTGGAGTCACT+TGG + chr1_1:38170804-38170823 None:intergenic 40.0%
AAACTGAGTGCAACTTGGCT+TGG - chr1_1:38164838-38164857 Msa0021410:three_prime_UTR 45.0%
AACTGAGTGCAACTTGGCTT+GGG - chr1_1:38164839-38164858 Msa0021410:three_prime_UTR 45.0%
AGGTTAACATGGAAGAGGGA+AGG - chr1_1:38164940-38164959 Msa0021410:three_prime_UTR 45.0%
GGTTAACATGGAAGAGGGAA+GGG - chr1_1:38164941-38164960 Msa0021410:three_prime_UTR 45.0%
GTGAGTGAGTTCACACAAGA+TGG - chr1_1:38164966-38164985 Msa0021410:three_prime_UTR 45.0%
AGGTACGTAAGAATGCCTTG+TGG - chr1_1:38165237-38165256 Msa0021410:CDS 45.0%
TGACAAGGAACTCCTTCCAA+GGG - chr1_1:38165782-38165801 Msa0021410:CDS 45.0%
AATACCGGGTTCGATTCTCT+GGG - chr1_1:38165811-38165830 Msa0021410:CDS 45.0%
! TTCTCTGGGAGAACAATGCT+TGG - chr1_1:38165825-38165844 Msa0021410:CDS 45.0%
ATTAGTCGCCCACCTTTGAT+GGG - chr1_1:38165878-38165897 Msa0021410:CDS 45.0%
GGTTTCATACCCATCAAAGG+TGG + chr1_1:38165890-38165909 None:intergenic 45.0%
! ACCGGTTTCATACCCATCAA+AGG + chr1_1:38165893-38165912 None:intergenic 45.0%
GGTAGGTCATGTAGTAGCTT+TGG - chr1_1:38166344-38166363 Msa0021410:intron 45.0%
GATCCATATCCAGTGTCCTA+GGG + chr1_1:38166594-38166613 None:intergenic 45.0%
TGATCCATATCCAGTGTCCT+AGG + chr1_1:38166595-38166614 None:intergenic 45.0%
! GGAGTACCCCTTCAAAAAGA+AGG + chr1_1:38166618-38166637 None:intergenic 45.0%
! GTCATTGGTTAGATCCCCAT+TGG - chr1_1:38166960-38166979 Msa0021410:intron 45.0%
ACCAATGTCACCAATTGGGT+TGG - chr1_1:38167600-38167619 Msa0021410:CDS 45.0%
! ACCAACCCAATTGGTGACAT+TGG + chr1_1:38167604-38167623 None:intergenic 45.0%
CCAAATGGTACCAACCCAAT+TGG + chr1_1:38167613-38167632 None:intergenic 45.0%
!! CCAATTGGGTTGGTACCATT+TGG - chr1_1:38167610-38167629 Msa0021410:CDS 45.0%
! CATGACACTCAGGTGGTTTT+AGG + chr1_1:38168213-38168232 None:intergenic 45.0%
ACCACCTGAGTGTCATGAAA+TGG - chr1_1:38168216-38168235 Msa0021410:CDS 45.0%
TCCATTTCATGACACTCAGG+TGG + chr1_1:38168220-38168239 None:intergenic 45.0%
TACACTCTAGCAGTAGGAAC+AGG - chr1_1:38168298-38168317 Msa0021410:CDS 45.0%
! GCACCAATGGTGGAAATGTT+AGG + chr1_1:38168334-38168353 None:intergenic 45.0%
!! GATAATGTGGGTTGGACTCT+TGG - chr1_1:38168475-38168494 Msa0021410:intron 45.0%
GGTTATGCACTTCCAACTCT+TGG - chr1_1:38168496-38168515 Msa0021410:intron 45.0%
AGGGAGTCCCTTCACTAAAA+TGG - chr1_1:38168582-38168601 Msa0021410:intron 45.0%
TTGATTCCACTCCCACATTG+AGG - chr1_1:38168716-38168735 Msa0021410:intron 45.0%
CTTATACCTCAATGTGGGAG+TGG + chr1_1:38168725-38168744 None:intergenic 45.0%
TACTAGAGTCCTCTTTCCCT+AGG - chr1_1:38168922-38168941 Msa0021410:intron 45.0%
AGTCCTCTTTCCCTAGGAAT+TGG - chr1_1:38168928-38168947 Msa0021410:intron 45.0%
!! AAGTTGCGGTTTGGTTTGGT+TGG + chr1_1:38169124-38169143 None:intergenic 45.0%
!! GCAACTTGGATTGGTTCGTA+TGG + chr1_1:38169515-38169534 None:intergenic 45.0%
ACACCCTACTGAATGCAACA+TGG - chr1_1:38169647-38169666 Msa0021410:intron 45.0%
CATAATATATGCAGGGTCCG+AGG + chr1_1:38169804-38169823 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr1_1:38169833-38169852 None:intergenic 45.0%
! TCTTGACACATGCCTTGTTG+AGG + chr1_1:38169946-38169965 None:intergenic 45.0%
ATGCCCAGTTACACATGTAG+AGG - chr1_1:38169994-38170013 Msa0021410:intron 45.0%
GTCTCCTCTACATGTGTAAC+TGG + chr1_1:38170001-38170020 None:intergenic 45.0%
TTCCTATGCCCATCCTTTGA+AGG + chr1_1:38170273-38170292 None:intergenic 45.0%
! CCCAAGCTTTTCATGCTTTC+TGG + chr1_1:38170496-38170515 None:intergenic 45.0%
TCACACATCACTGAGGAACA+TGG - chr1_1:38170583-38170602 Msa0021410:intron 45.0%
ACTGAGGAACATGGTCACAA+AGG - chr1_1:38170592-38170611 Msa0021410:intron 45.0%
CTGAGGAACATGGTCACAAA+GGG - chr1_1:38170593-38170612 Msa0021410:intron 45.0%
!!! TTTAACAATTTTAATAAAAA+AGG + chr1_1:38165202-38165221 None:intergenic 5.0%
!!! ATTATTGTTTTATTTTTTTA+AGG - chr1_1:38166514-38166533 Msa0021410:intron 5.0%
!!! TTATTGTTTTATTTTTTTAA+GGG - chr1_1:38166515-38166534 Msa0021410:intron 5.0%
!!! ATTTTTTTTTTTTTTTTGAA+AGG - chr1_1:38166565-38166584 Msa0021410:intron 5.0%
!! TTAATTAAGTAAAAATATAT+AGG - chr1_1:38167755-38167774 Msa0021410:intron 5.0%
GATGAGAGAGGAAGAGGGAA+TGG + chr1_1:38165071-38165090 None:intergenic 50.0%
AAACGGGTGTTAACGAGTGC+CGG - chr1_1:38165325-38165344 Msa0021410:CDS 50.0%
!!! GAGTGCCGGAGCACTTTTTA+AGG - chr1_1:38165339-38165358 Msa0021410:CDS 50.0%
AACTAGTGCCCCTAGAGCAT+TGG - chr1_1:38165463-38165482 Msa0021410:CDS 50.0%
TGGAAGGAGTTCCTTGTCAC+TGG + chr1_1:38165781-38165800 None:intergenic 50.0%
GTGACAAGGAACTCCTTCCA+AGG - chr1_1:38165781-38165800 Msa0021410:CDS 50.0%
GAATACCGGGTTCGATTCTC+TGG - chr1_1:38165810-38165829 Msa0021410:CDS 50.0%
TTCTCCCAGAGAATCGAACC+CGG + chr1_1:38165818-38165837 None:intergenic 50.0%
TCAAAGGTGGGCGACTAATC+CGG + chr1_1:38165877-38165896 None:intergenic 50.0%
! GATTAGTCGCCCACCTTTGA+TGG - chr1_1:38165877-38165896 Msa0021410:CDS 50.0%
AGTCCCTAGGACACTGGATA+TGG - chr1_1:38166588-38166607 Msa0021410:intron 50.0%
TTTGCGTGAGATCCTAGGGT+TGG + chr1_1:38166753-38166772 None:intergenic 50.0%
TGGTTAGATCCCCATTGGGA+TGG - chr1_1:38166965-38166984 Msa0021410:intron 50.0%
ATCCCCATTGGGATGGTCTA+AGG - chr1_1:38166972-38166991 Msa0021410:intron 50.0%
TCCCCATTGGGATGGTCTAA+GGG - chr1_1:38166973-38166992 Msa0021410:intron 50.0%
ACCCCTTAGACCATCCCAAT+GGG + chr1_1:38166978-38166997 None:intergenic 50.0%
TATGTTGCTGACGCCTACCT+TGG - chr1_1:38167654-38167673 Msa0021410:CDS 50.0%
CAAAGGTCCAATAACGGCCA+AGG + chr1_1:38167674-38167693 None:intergenic 50.0%
AGACATGCCCTGCCAATTTG+AGG + chr1_1:38168161-38168180 None:intergenic 50.0%
!!! CACTCAGGTGGTTTTAGGCT+TGG + chr1_1:38168208-38168227 None:intergenic 50.0%
GCACTCTACACTCTAGCAGT+AGG - chr1_1:38168292-38168311 Msa0021410:CDS 50.0%
ACTCTAGCAGTAGGAACAGG+TGG - chr1_1:38168301-38168320 Msa0021410:CDS 50.0%
TTAGTGAAGGGACTCCCTGT+AGG + chr1_1:38168580-38168599 None:intergenic 50.0%
CCTCCAATTCCTAGGGAAAG+AGG + chr1_1:38168934-38168953 None:intergenic 50.0%
CCTCTTTCCCTAGGAATTGG+AGG - chr1_1:38168931-38168950 Msa0021410:intron 50.0%
!! TTGGATTGGTTCGTATGGCG+CGG + chr1_1:38169510-38169529 None:intergenic 50.0%
! TGCATTCAGTAGGGTGTTCG+CGG + chr1_1:38169644-38169663 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + chr1_1:38169834-38169853 None:intergenic 50.0%
CTCCTTCAAAGGATGGGCAT+AGG - chr1_1:38170268-38170287 Msa0021410:intron 50.0%
AGGAACATGGTCACAAAGGG+TGG - chr1_1:38170596-38170615 Msa0021410:intron 50.0%
TCACTGGAGCCCAAGCAACT+TGG + chr1_1:38165765-38165784 None:intergenic 55.0%
TTGCTTGGGCTCCAGTGACA+AGG - chr1_1:38165767-38165786 Msa0021410:CDS 55.0%
AAGGAACTCCTTCCAAGGGC+AGG - chr1_1:38165786-38165805 Msa0021410:CDS 55.0%
AGGAACTCCTTCCAAGGGCA+GGG - chr1_1:38165787-38165806 Msa0021410:CDS 55.0%
TTCCAAGGGCAGGGGAATAC+CGG - chr1_1:38165796-38165815 Msa0021410:CDS 55.0%
GGTTCGTACGTAGAGCCATG+CGG + chr1_1:38165856-38165875 None:intergenic 55.0%
! GCATGGCTCTACGTACGAAC+CGG - chr1_1:38165855-38165874 Msa0021410:CDS 55.0%
GAAAGGAGTCCCTAGGACAC+TGG - chr1_1:38166582-38166601 Msa0021410:intron 55.0%
CGTGAGATCCTAGGGTTGGA+TGG + chr1_1:38166749-38166768 None:intergenic 55.0%
CCCCTTAGACCATCCCAATG+GGG + chr1_1:38166977-38166996 None:intergenic 55.0%
CCCCATTGGGATGGTCTAAG+GGG - chr1_1:38166974-38166993 Msa0021410:intron 55.0%
CACCCCTTAGACCATCCCAA+TGG + chr1_1:38166979-38166998 None:intergenic 55.0%
ACGCCTACCTTGGCCGTTAT+TGG - chr1_1:38167664-38167683 Msa0021410:CDS 55.0%
GGTCCAATAACGGCCAAGGT+AGG + chr1_1:38167670-38167689 None:intergenic 55.0%
GGTGGTCGAGGTTTGAACCT+CGG - chr1_1:38169784-38169803 Msa0021410:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_1:38169838-38169857 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_1:38169835-38169854 Msa0021410:intron 55.0%
CTGAGCTAAGCTCACGAGGA+CGG - chr1_1:38169839-38169858 Msa0021410:intron 55.0%
GGAACTCCTTCCAAGGGCAG+GGG - chr1_1:38165788-38165807 Msa0021410:CDS 60.0%
GGTATTCCCCTGCCCTTGGA+AGG + chr1_1:38165797-38165816 None:intergenic 60.0%
TCCAAGGGCAGGGGAATACC+GGG - chr1_1:38165797-38165816 Msa0021410:CDS 60.0%
CAATGCTTGGCCAGTCCGCA+TGG - chr1_1:38165838-38165857 Msa0021410:CDS 60.0%
GTACGTAGAGCCATGCGGAC+TGG + chr1_1:38165851-38165870 None:intergenic 60.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG + chr1_1:38169629-38169648 None:intergenic 60.0%
! TCAGTAGGGTGTTCGCGGTG+CGG + chr1_1:38169639-38169658 None:intergenic 60.0%
ACCCGGTATTCCCCTGCCCT+TGG + chr1_1:38165801-38165820 None:intergenic 65.0%
! AGGGTGTTCGCGGTGCGGTT+TGG + chr1_1:38169634-38169653 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 38164836 38171052 38164836 ID=Msa0021410;Name=Msa0021410
chr1_1 mRNA 38164836 38171052 38164836 ID=Msa0021410-mRNA-1;Parent=Msa0021410;Name=Msa0021410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=112|1|1|1|1|1|4|230|593
chr1_1 exon 38164836 38165948 38164836 ID=Msa0021410-mRNA-1:exon:11844;Parent=Msa0021410-mRNA-1
chr1_1 exon 38167151 38167716 38167151 ID=Msa0021410-mRNA-1:exon:11843;Parent=Msa0021410-mRNA-1
chr1_1 exon 38168169 38168386 38168169 ID=Msa0021410-mRNA-1:exon:11842;Parent=Msa0021410-mRNA-1
chr1_1 exon 38170826 38171052 38170826 ID=Msa0021410-mRNA-1:exon:11841;Parent=Msa0021410-mRNA-1
chr1_1 five_prime_UTR 38170941 38171052 38170941 ID=Msa0021410-mRNA-1:five_prime_utr;Parent=Msa0021410-mRNA-1
chr1_1 CDS 38170826 38170940 38170826 ID=Msa0021410-mRNA-1:cds;Parent=Msa0021410-mRNA-1
chr1_1 CDS 38168169 38168386 38168169 ID=Msa0021410-mRNA-1:cds;Parent=Msa0021410-mRNA-1
chr1_1 CDS 38167151 38167716 38167151 ID=Msa0021410-mRNA-1:cds;Parent=Msa0021410-mRNA-1
chr1_1 CDS 38165066 38165948 38165066 ID=Msa0021410-mRNA-1:cds;Parent=Msa0021410-mRNA-1
chr1_1 three_prime_UTR 38164836 38165065 38164836 ID=Msa0021410-mRNA-1:three_prime_utr;Parent=Msa0021410-mRNA-1
Gene Sequence

>Msa0021410

ATGGAAGAGGGAAGGGTAGTGAGTGAGTTCACACAAGATGGAACTGTTGATCTTAAAGGGAAACCTATTCTCAAATCCAAAACTGGTTGTTGGAAAGCTTGTTCCTTCTTTGTTGTGTATGAGGTATTTGAGAGAATGGCTTATTATGGGATATCATCAAATTTGATCTTATATTTAATAAAGAAGCTTCATCAAGGTACTGTGACTTCTTCTACCAATGTCACCAATTGGGTTGGTACCATTTGGATCACTCCAATATTAGGTGCTTATGTTGCTGACGCCTACCTTGGCCGTTATTGGACCTTTGTTACTGCTTCCTTTATCTACCTATTGGGCATGTCTATGCTCACATTATCAGTTTCTCTTCCAAGCCTAAAACCACCTGAGTGTCATGAAATGGATGTTACAAAATGCAAGGAAGCTTCCACATTACAGCTAGTAGTGTTCTATGGTGCACTCTACACTCTAGCAGTAGGAACAGGTGGAACTAAGCCTAACATTTCCACCATTGGTGCTGATCAATTTGATGAGTTTGACACAAAAGAGAAGAAACATAAACTCTCATTCTTCAATTGGTGGATGTTCAGCATCTTTATTGGGACCCTTTTTGCAAATTCTGTTTTAGTCTATATACAAGATAATGTGGGTTGGACTCTTGGTTATGCACTTCCAACTCTTGGACTTGCAATATCTATCATAATATTTTTGGCAGGCACACCATTCTATAGACATAAAGTACCTACAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATTGTGGCTGCTATGAAGAAATGGAATGTGCCTATTCCTAGTGACCCTAAAGAACTATATGAACTTGATTTGGAAGAGTATGCAAAGAAAGGAAGTGTTAGAATTGATTCCACTCCCACATTGAGATTCCTCAACAAGGCATGTGTCAAGACTAATTCAAGTACTAGTGGAGGTGTGTTATGCCCAGTTACACATGTAGAGGAGACCAAACAAATGATAAGAATGATCCCAATCATGGCTACTACATTAATTCCTAGTACAATGATTGCTCAAATAAATACACTATTTGTGAAGCAAGGAACAACACTTGATAGAGGCATTGGGAGTTTCAAAATTCCACCAGCAAGTTTAGGTACATTTGTGACAATATCAATGCTTATAAGTGTTGTGCTCTATGATCGTTTCTTTGTAAAGATTATGCAAAGATGGACTAAAAACCCTAGAGGAATTACTCTCCTTCAAAGGATGGGCATAGGAATCATAATTCATATAGTGATTATGGTAGTTGCAACTTTCACTGAAAGATATAGGCTTAGTGTAGCCAAAGAACATGGAGTAGTTGAAAATGGAGGATTAGTTCCATTGAGCATATTCATTTTACTCCCTCAATTTTTACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCTAAAATTGAGTTCTTCTATGATCAAGCTCCAGAAAGCATGAAAAGCTTGGGCACTTCTTATTCAATGACTAGCTTAGGCATTGGAAATTTTATTAGTACATTTCTTCTATCAACAGTTTCACACATCACTGAGGAACATGGTCACAAAGGGTGGATTTTGAATAACCTCAATGCTTCTCATCTTGATTACTACTATGCATTTTTGGCAATATTAAACATCTTGAACTTTATCTTCTTTTGTATTGTTACGAAGTATTATGTATATAGAGCTGAAATTTCAGATTCCATAAAAGTGCTTGCAGAAGAATTGAAGGAGAAGAAAAGTGTTGTGTCATACCAAGTGACTCCAAGAGATTAG
Protein sequence

>Msa0021410

MEEGRVVSEFTQDGTVDLKGKPILKSKTGCWKACSFFVVYEVFERMAYYGISSNLILYLIKKLHQGTVTSSTNVTNWVGTIWITPILGAYVADAYLGRYWTFVTASFIYLLGMSMLTLSVSLPSLKPPECHEMDVTKCKEASTLQLVVFYGALYTLAVGTGGTKPNISTIGADQFDEFDTKEKKHKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLAGTPFYRHKVPTGSPFTKMAKVIVAAMKKWNVPIPSDPKELYELDLEEYAKKGSVRIDSTPTLRFLNKACVKTNSSTSGGVLCPVTHVEETKQMIRMIPIMATTLIPSTMIAQINTLFVKQGTTLDRGIGSFKIPPASLGTFVTISMLISVVLYDRFFVKIMQRWTKNPRGITLLQRMGIGIIIHIVIMVVATFTERYRLSVAKEHGVVENGGLVPLSIFILLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFISTFLLSTVSHITEEHGHKGWILNNLNASHLDYYYAFLAILNILNFIFFCIVTKYYVYRAEISDSIKVLAEELKEKKSVVSYQVTPRD*