AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1281720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281720 MtrunA17_Chr8g0352531 92.973 185 7 1 1 185 1 179 6.79e-114 321
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCATTATGTCCTTCT+AGG 0.088496 8_3:+21422600 None:intergenic
TTTGGAATAGGTTTGTAAAT+TGG 0.202275 8_3:+21422263 None:intergenic
CTTTGGAATAGGCTTGTAAA+TGG 0.212935 8_3:+21422406 None:intergenic
TTTGGAATAGGCTTGTAAAT+TGG 0.225594 8_3:+21422359 None:intergenic
GGAATTGGTTTCTTGAATAT+TGG 0.237384 8_3:+21422518 None:intergenic
TTATAGATTGGAACGTATTT+TGG 0.246929 8_3:+21422449 None:intergenic
TTTGGTGTAGGTTTGTAAAT+TGG 0.267204 8_3:+21422467 None:intergenic
TTGTGAATAGGTTTGTAAAA+TGG 0.278721 8_3:+21422497 None:intergenic
ATTGGAATAGGCTTGTAAAT+TGG 0.290762 8_3:+21422281 None:intergenic
ATTGGAATTACCTTTGGAAT+AGG 0.316743 8_3:+21422299 None:intergenic
ATTGGAATGTCTTTGTGAAT+AGG 0.322130 8_3:+21422485 None:intergenic
ACTGGAACAGGCTTGTAAAT+TGG 0.327270 8_3:+21422329 None:intergenic
CAATATGCAAAGGCCACTTT+TGG 0.329589 8_3:-21423475 Msa1281720:CDS
ATTGGAATAACCTTTGGAAT+AGG 0.333599 8_3:+21422347 None:intergenic
ATAGGTTTGTAAATTGGAAT+AGG 0.345184 8_3:+21422269 None:intergenic
ATGGGAATTTCCTTTGGAAT+AGG 0.348694 8_3:+21422251 None:intergenic
ACTGGAATTACCTTTGGAAT+AGG 0.360911 8_3:+21422395 None:intergenic
ATTGGAACAGGCTTGTAAAC+TGG 0.363527 8_3:+21422377 None:intergenic
TTTGGAATAGGCTTGTAAAC+TGG 0.369460 8_3:+21422311 None:intergenic
ATAGGCTTGTAAATGGGAAT+TGG 0.370906 8_3:+21422413 None:intergenic
CAAAAGTGGCCTTTGCATAT+TGG 0.376190 8_3:+21423476 None:intergenic
ATAGGTTTGTAAAATGGAAT+TGG 0.379124 8_3:+21422503 None:intergenic
TTTACAATGGGAATTTCCTT+TGG 0.389183 8_3:+21422245 None:intergenic
GTAGCAAGAAATGATCCTTC+AGG 0.392442 8_3:-21423399 Msa1281720:intron
TTGTAAATTGGAATAACCTT+TGG 0.409850 8_3:+21422341 None:intergenic
TTGTAAACTGGAATTACCTT+TGG 0.413189 8_3:+21422389 None:intergenic
TTGTAAATTGGAATTACCTT+TGG 0.416670 8_3:+21422293 None:intergenic
TAATGGATTGGCTTTACAAT+GGG 0.423378 8_3:+21422233 None:intergenic
ATAGGCTTGTAAACTGGAAC+AGG 0.429652 8_3:+21422317 None:intergenic
ATAGGCTTGTAAATTGGAAC+AGG 0.440807 8_3:+21422365 None:intergenic
ATGGGAATTGGTTTGTGGAT+AGG 0.448083 8_3:+21422425 None:intergenic
GCTTCCCATCTGTGTTCACT+TGG 0.449323 8_3:+21422651 None:intergenic
GCATGATAATCTTAATGGAT+TGG 0.454921 8_3:+21422221 None:intergenic
ACAACAAAGACAAACCTAGA+AGG 0.456489 8_3:-21422614 Msa1281720:CDS
TTGTGGATAGGCTTATAGAT+TGG 0.461177 8_3:+21422437 None:intergenic
ATTTATACTATAAGCTAGGT+AGG 0.466869 8_3:+21423622 None:intergenic
TGTAAATGGGAATTGGTTTG+TGG 0.491139 8_3:+21422420 None:intergenic
TTTGGAATAGGCTTGTAAAT+GGG 0.493642 8_3:+21422407 None:intergenic
CATTATTTATACTATAAGCT+AGG 0.531988 8_3:+21423618 None:intergenic
TTAATGGATTGGCTTTACAA+TGG 0.537191 8_3:+21422232 None:intergenic
GGAAACCAAGTGAACACAGA+TGG 0.546430 8_3:-21422656 Msa1281720:CDS
TTTATACTATAAGCTAGGTA+GGG 0.547635 8_3:+21423623 None:intergenic
CATCTAAAACACAAACTCAA+AGG 0.559830 8_3:-21422557 Msa1281720:CDS
AAGAGTGGTTTAGAAGTGAA+AGG 0.560442 8_3:+21423542 None:intergenic
AATTTACAAACCTATTCCAA+AGG 0.560996 8_3:-21422261 Msa1281720:CDS
CATTTACAAGCCTATTCCAA+AGG 0.578514 8_3:-21422405 Msa1281720:CDS
GAAACCAAGTGAACACAGAT+GGG 0.582541 8_3:-21422655 Msa1281720:CDS
GGAACCCAGAAGGCCAAAAG+TGG 0.583318 8_3:+21423462 None:intergenic
AGTTTACAAGCCTATTCCAA+AGG 0.584834 8_3:-21422309 Msa1281720:CDS
AATTTACAAGCCTATTCCAA+AGG 0.591786 8_3:-21422357 Msa1281720:CDS
AAGGTGACAAGGAGCAACAA+AGG 0.600910 8_3:+21423441 None:intergenic
TAGCATAACAGAAGGTGACA+AGG 0.606710 8_3:+21423430 None:intergenic
CAAGGCCACAAAAGAAAGAG+TGG 0.607186 8_3:+21423527 None:intergenic
GAGCAACAAAGGAACCCAGA+AGG 0.618628 8_3:+21423452 None:intergenic
GAAAAGCTTCCAATATGCAA+AGG 0.633003 8_3:-21423485 Msa1281720:CDS
AACAGAAGTAGCATAACAGA+AGG 0.639211 8_3:+21423422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATAAAATTTTATTTGA+AGG - chr8_3:21422835-21422854 Msa1281720:intron 10.0%
!!! TTGAATAAAATTTTATTTGA+AGG - chr8_3:21422835-21422854 Msa1281720:intron 10.0%
!! ACATTTATATTTCCTTTATT+TGG - chr8_3:21422607-21422626 Msa1281720:CDS 15.0%
!! ACATTTATATTTCCTTTATT+TGG - chr8_3:21422607-21422626 Msa1281720:CDS 15.0%
!! CATTATTTATACTATAAGCT+AGG + chr8_3:21422246-21422265 None:intergenic 20.0%
!! AAAAAAGAGAGAGAAATTTA+TGG - chr8_3:21422631-21422650 Msa1281720:CDS 20.0%
!! AATGAAGAAGAAAAATTCAA+AGG - chr8_3:21423274-21423293 Msa1281720:intron 20.0%
!! CATTATTTATACTATAAGCT+AGG + chr8_3:21422246-21422265 None:intergenic 20.0%
!! AAAAAAGAGAGAGAAATTTA+TGG - chr8_3:21422631-21422650 Msa1281720:CDS 20.0%
!! AATGAAGAAGAAAAATTCAA+AGG - chr8_3:21423274-21423293 Msa1281720:intron 20.0%
! TTTATACTATAAGCTAGGTA+GGG + chr8_3:21422241-21422260 None:intergenic 25.0%
! ATTTATACTATAAGCTAGGT+AGG + chr8_3:21422242-21422261 None:intergenic 25.0%
! AGTAGTACATATTCATAGAT+TGG - chr8_3:21422557-21422576 Msa1281720:CDS 25.0%
! GTAGTACATATTCATAGATT+GGG - chr8_3:21422558-21422577 Msa1281720:CDS 25.0%
!!! ATTTTTGTTTACTCTTGGTT+TGG - chr8_3:21422583-21422602 Msa1281720:CDS 25.0%
!!! CTCTCTTTTTTACCAAATAA+AGG + chr8_3:21422622-21422641 None:intergenic 25.0%
! TCCTTAAAGTCATGTTTAAA+TGG - chr8_3:21422687-21422706 Msa1281720:intron 25.0%
! ACCATTTAAACATGACTTTA+AGG + chr8_3:21422691-21422710 None:intergenic 25.0%
! TTACTCGATTTATAAACTCT+AGG + chr8_3:21423167-21423186 None:intergenic 25.0%
!!! GTTTCTTGAATATTGGTTTT+TGG + chr8_3:21423339-21423358 None:intergenic 25.0%
! ATAGGTTTGTAAAATGGAAT+TGG + chr8_3:21423361-21423380 None:intergenic 25.0%
! TTGTGAATAGGTTTGTAAAA+TGG + chr8_3:21423367-21423386 None:intergenic 25.0%
!! TTATAGATTGGAACGTATTT+TGG + chr8_3:21423415-21423434 None:intergenic 25.0%
! TTGTAAATTGGAATAACCTT+TGG + chr8_3:21423523-21423542 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr8_3:21423571-21423590 None:intergenic 25.0%
! ATAGGTTTGTAAATTGGAAT+AGG + chr8_3:21423595-21423614 None:intergenic 25.0%
!! TTTGGAATAGGTTTGTAAAT+TGG + chr8_3:21423601-21423620 None:intergenic 25.0%
! AATTTACAAACCTATTCCAA+AGG - chr8_3:21423600-21423619 Msa1281720:five_prime_UTR 25.0%
! TTTATACTATAAGCTAGGTA+GGG + chr8_3:21422241-21422260 None:intergenic 25.0%
! ATTTATACTATAAGCTAGGT+AGG + chr8_3:21422242-21422261 None:intergenic 25.0%
! AGTAGTACATATTCATAGAT+TGG - chr8_3:21422557-21422576 Msa1281720:CDS 25.0%
! GTAGTACATATTCATAGATT+GGG - chr8_3:21422558-21422577 Msa1281720:CDS 25.0%
!!! ATTTTTGTTTACTCTTGGTT+TGG - chr8_3:21422583-21422602 Msa1281720:CDS 25.0%
!!! CTCTCTTTTTTACCAAATAA+AGG + chr8_3:21422622-21422641 None:intergenic 25.0%
! TCCTTAAAGTCATGTTTAAA+TGG - chr8_3:21422687-21422706 Msa1281720:intron 25.0%
! ACCATTTAAACATGACTTTA+AGG + chr8_3:21422691-21422710 None:intergenic 25.0%
! TTACTCGATTTATAAACTCT+AGG + chr8_3:21423167-21423186 None:intergenic 25.0%
!!! GTTTCTTGAATATTGGTTTT+TGG + chr8_3:21423339-21423358 None:intergenic 25.0%
! ATAGGTTTGTAAAATGGAAT+TGG + chr8_3:21423361-21423380 None:intergenic 25.0%
! TTGTGAATAGGTTTGTAAAA+TGG + chr8_3:21423367-21423386 None:intergenic 25.0%
!! TTATAGATTGGAACGTATTT+TGG + chr8_3:21423415-21423434 None:intergenic 25.0%
! TTGTAAATTGGAATAACCTT+TGG + chr8_3:21423523-21423542 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr8_3:21423571-21423590 None:intergenic 25.0%
! ATAGGTTTGTAAATTGGAAT+AGG + chr8_3:21423595-21423614 None:intergenic 25.0%
!! TTTGGAATAGGTTTGTAAAT+TGG + chr8_3:21423601-21423620 None:intergenic 25.0%
! AATTTACAAACCTATTCCAA+AGG - chr8_3:21423600-21423619 Msa1281720:five_prime_UTR 25.0%
CATGGTTGAAAAATTCAACA+AGG + chr8_3:21422355-21422374 None:intergenic 30.0%
TATTATACTCACAAACCTGA+AGG + chr8_3:21422480-21422499 None:intergenic 30.0%
!!! GGGTTATTTTTGTTTACTCT+TGG - chr8_3:21422578-21422597 Msa1281720:CDS 30.0%
ACTATCATCATAATCACACA+AGG + chr8_3:21422735-21422754 None:intergenic 30.0%
AAACAAAACAAACACACACT+TGG - chr8_3:21423126-21423145 Msa1281720:intron 30.0%
! TAATTTTGCATTTCTTGTGC+AGG - chr8_3:21423184-21423203 Msa1281720:intron 30.0%
! CATCTAAAACACAAACTCAA+AGG - chr8_3:21423304-21423323 Msa1281720:intron 30.0%
! GGAATTGGTTTCTTGAATAT+TGG + chr8_3:21423346-21423365 None:intergenic 30.0%
ATTGGAATGTCTTTGTGAAT+AGG + chr8_3:21423379-21423398 None:intergenic 30.0%
! TTTGGTGTAGGTTTGTAAAT+TGG + chr8_3:21423397-21423416 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+GGG + chr8_3:21423457-21423476 None:intergenic 30.0%
TTGTAAACTGGAATTACCTT+TGG + chr8_3:21423475-21423494 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr8_3:21423457-21423476 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr8_3:21423504-21423523 Msa1281720:exon 30.0%
!! ATTGGAATAACCTTTGGAAT+AGG + chr8_3:21423517-21423536 None:intergenic 30.0%
!! ATTGGAATTACCTTTGGAAT+AGG + chr8_3:21423565-21423584 None:intergenic 30.0%
ATTGGAATAGGCTTGTAAAT+TGG + chr8_3:21423583-21423602 None:intergenic 30.0%
TTTACAATGGGAATTTCCTT+TGG + chr8_3:21423619-21423638 None:intergenic 30.0%
!! TAATGGATTGGCTTTACAAT+GGG + chr8_3:21423631-21423650 None:intergenic 30.0%
!! TTAATGGATTGGCTTTACAA+TGG + chr8_3:21423632-21423651 None:intergenic 30.0%
CATGGTTGAAAAATTCAACA+AGG + chr8_3:21422355-21422374 None:intergenic 30.0%
TATTATACTCACAAACCTGA+AGG + chr8_3:21422480-21422499 None:intergenic 30.0%
!!! GGGTTATTTTTGTTTACTCT+TGG - chr8_3:21422578-21422597 Msa1281720:CDS 30.0%
ACTATCATCATAATCACACA+AGG + chr8_3:21422735-21422754 None:intergenic 30.0%
AAACAAAACAAACACACACT+TGG - chr8_3:21423126-21423145 Msa1281720:intron 30.0%
! TAATTTTGCATTTCTTGTGC+AGG - chr8_3:21423184-21423203 Msa1281720:intron 30.0%
! CATCTAAAACACAAACTCAA+AGG - chr8_3:21423304-21423323 Msa1281720:intron 30.0%
! GGAATTGGTTTCTTGAATAT+TGG + chr8_3:21423346-21423365 None:intergenic 30.0%
ATTGGAATGTCTTTGTGAAT+AGG + chr8_3:21423379-21423398 None:intergenic 30.0%
! TTTGGTGTAGGTTTGTAAAT+TGG + chr8_3:21423397-21423416 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+GGG + chr8_3:21423457-21423476 None:intergenic 30.0%
TTGTAAACTGGAATTACCTT+TGG + chr8_3:21423475-21423494 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr8_3:21423457-21423476 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr8_3:21423504-21423523 Msa1281720:exon 30.0%
!! ATTGGAATAACCTTTGGAAT+AGG + chr8_3:21423517-21423536 None:intergenic 30.0%
!! ATTGGAATTACCTTTGGAAT+AGG + chr8_3:21423565-21423584 None:intergenic 30.0%
ATTGGAATAGGCTTGTAAAT+TGG + chr8_3:21423583-21423602 None:intergenic 30.0%
TTTACAATGGGAATTTCCTT+TGG + chr8_3:21423619-21423638 None:intergenic 30.0%
!! TAATGGATTGGCTTTACAAT+GGG + chr8_3:21423631-21423650 None:intergenic 30.0%
!! TTAATGGATTGGCTTTACAA+TGG + chr8_3:21423632-21423651 None:intergenic 30.0%
AAGAGTGGTTTAGAAGTGAA+AGG + chr8_3:21422322-21422341 None:intergenic 35.0%
! CTAAACCACTCTTTCTTTTG+TGG - chr8_3:21422329-21422348 Msa1281720:CDS 35.0%
! CATATTGGAAGCTTTTCTCA+TGG + chr8_3:21422373-21422392 None:intergenic 35.0%
GAAAAGCTTCCAATATGCAA+AGG - chr8_3:21422376-21422395 Msa1281720:CDS 35.0%
AACAGAAGTAGCATAACAGA+AGG + chr8_3:21422442-21422461 None:intergenic 35.0%
ATTCAAACCAATACACACAC+AGG - chr8_3:21422936-21422955 Msa1281720:intron 35.0%
GGTTCAAGAAGAATTGAACT+CGG - chr8_3:21422968-21422987 Msa1281720:intron 35.0%
ACAACAAAGACAAACCTAGA+AGG - chr8_3:21423247-21423266 Msa1281720:intron 35.0%
CTTCTTCATTATGTCCTTCT+AGG + chr8_3:21423264-21423283 None:intergenic 35.0%
!!! ATTGGAACGTATTTTGGTGT+AGG + chr8_3:21423409-21423428 None:intergenic 35.0%
TTGTGGATAGGCTTATAGAT+TGG + chr8_3:21423427-21423446 None:intergenic 35.0%
!! TGTAAATGGGAATTGGTTTG+TGG + chr8_3:21423444-21423463 None:intergenic 35.0%
ATAGGCTTGTAAATGGGAAT+TGG + chr8_3:21423451-21423470 None:intergenic 35.0%
!! CTTTGGAATAGGCTTGTAAA+TGG + chr8_3:21423458-21423477 None:intergenic 35.0%
CATTTACAAGCCTATTCCAA+AGG - chr8_3:21423456-21423475 Msa1281720:CDS 35.0%
!! ACTGGAATTACCTTTGGAAT+AGG + chr8_3:21423469-21423488 None:intergenic 35.0%
ATAGGCTTGTAAATTGGAAC+AGG + chr8_3:21423499-21423518 None:intergenic 35.0%
! TTTGGAATAGGCTTGTAAAC+TGG + chr8_3:21423553-21423572 None:intergenic 35.0%
AGTTTACAAGCCTATTCCAA+AGG - chr8_3:21423552-21423571 Msa1281720:five_prime_UTR 35.0%
!! ATGGGAATTTCCTTTGGAAT+AGG + chr8_3:21423613-21423632 None:intergenic 35.0%
AAGAGTGGTTTAGAAGTGAA+AGG + chr8_3:21422322-21422341 None:intergenic 35.0%
! CTAAACCACTCTTTCTTTTG+TGG - chr8_3:21422329-21422348 Msa1281720:CDS 35.0%
! CATATTGGAAGCTTTTCTCA+TGG + chr8_3:21422373-21422392 None:intergenic 35.0%
GAAAAGCTTCCAATATGCAA+AGG - chr8_3:21422376-21422395 Msa1281720:CDS 35.0%
AACAGAAGTAGCATAACAGA+AGG + chr8_3:21422442-21422461 None:intergenic 35.0%
ATTCAAACCAATACACACAC+AGG - chr8_3:21422936-21422955 Msa1281720:intron 35.0%
GGTTCAAGAAGAATTGAACT+CGG - chr8_3:21422968-21422987 Msa1281720:intron 35.0%
ACAACAAAGACAAACCTAGA+AGG - chr8_3:21423247-21423266 Msa1281720:intron 35.0%
CTTCTTCATTATGTCCTTCT+AGG + chr8_3:21423264-21423283 None:intergenic 35.0%
!!! ATTGGAACGTATTTTGGTGT+AGG + chr8_3:21423409-21423428 None:intergenic 35.0%
TTGTGGATAGGCTTATAGAT+TGG + chr8_3:21423427-21423446 None:intergenic 35.0%
!! TGTAAATGGGAATTGGTTTG+TGG + chr8_3:21423444-21423463 None:intergenic 35.0%
ATAGGCTTGTAAATGGGAAT+TGG + chr8_3:21423451-21423470 None:intergenic 35.0%
!! CTTTGGAATAGGCTTGTAAA+TGG + chr8_3:21423458-21423477 None:intergenic 35.0%
CATTTACAAGCCTATTCCAA+AGG - chr8_3:21423456-21423475 Msa1281720:CDS 35.0%
!! ACTGGAATTACCTTTGGAAT+AGG + chr8_3:21423469-21423488 None:intergenic 35.0%
ATAGGCTTGTAAATTGGAAC+AGG + chr8_3:21423499-21423518 None:intergenic 35.0%
! TTTGGAATAGGCTTGTAAAC+TGG + chr8_3:21423553-21423572 None:intergenic 35.0%
AGTTTACAAGCCTATTCCAA+AGG - chr8_3:21423552-21423571 Msa1281720:five_prime_UTR 35.0%
!! ATGGGAATTTCCTTTGGAAT+AGG + chr8_3:21423613-21423632 None:intergenic 35.0%
CAAAAGTGGCCTTTGCATAT+TGG + chr8_3:21422388-21422407 None:intergenic 40.0%
!! CAATATGCAAAGGCCACTTT+TGG - chr8_3:21422386-21422405 Msa1281720:CDS 40.0%
TAGCATAACAGAAGGTGACA+AGG + chr8_3:21422434-21422453 None:intergenic 40.0%
GTAGCAAGAAATGATCCTTC+AGG - chr8_3:21422462-21422481 Msa1281720:CDS 40.0%
GAAACCAAGTGAACACAGAT+GGG - chr8_3:21423206-21423225 Msa1281720:intron 40.0%
!! ATGGGAATTGGTTTGTGGAT+AGG + chr8_3:21423439-21423458 None:intergenic 40.0%
ATTGGAACAGGCTTGTAAAC+TGG + chr8_3:21423487-21423506 None:intergenic 40.0%
ACTGGAACAGGCTTGTAAAT+TGG + chr8_3:21423535-21423554 None:intergenic 40.0%
ATAGGCTTGTAAACTGGAAC+AGG + chr8_3:21423547-21423566 None:intergenic 40.0%
CAAAAGTGGCCTTTGCATAT+TGG + chr8_3:21422388-21422407 None:intergenic 40.0%
!! CAATATGCAAAGGCCACTTT+TGG - chr8_3:21422386-21422405 Msa1281720:CDS 40.0%
TAGCATAACAGAAGGTGACA+AGG + chr8_3:21422434-21422453 None:intergenic 40.0%
GTAGCAAGAAATGATCCTTC+AGG - chr8_3:21422462-21422481 Msa1281720:CDS 40.0%
GAAACCAAGTGAACACAGAT+GGG - chr8_3:21423206-21423225 Msa1281720:intron 40.0%
!! ATGGGAATTGGTTTGTGGAT+AGG + chr8_3:21423439-21423458 None:intergenic 40.0%
ATTGGAACAGGCTTGTAAAC+TGG + chr8_3:21423487-21423506 None:intergenic 40.0%
ACTGGAACAGGCTTGTAAAT+TGG + chr8_3:21423535-21423554 None:intergenic 40.0%
ATAGGCTTGTAAACTGGAAC+AGG + chr8_3:21423547-21423566 None:intergenic 40.0%
CAAGGCCACAAAAGAAAGAG+TGG + chr8_3:21422337-21422356 None:intergenic 45.0%
AAGGTGACAAGGAGCAACAA+AGG + chr8_3:21422423-21422442 None:intergenic 45.0%
ACACACTTGGCCATTAAGCT+AGG - chr8_3:21423139-21423158 Msa1281720:intron 45.0%
ACTCTAGGTGCCTAGCTTAA+TGG + chr8_3:21423152-21423171 None:intergenic 45.0%
GGAAACCAAGTGAACACAGA+TGG - chr8_3:21423205-21423224 Msa1281720:intron 45.0%
CAAGGCCACAAAAGAAAGAG+TGG + chr8_3:21422337-21422356 None:intergenic 45.0%
AAGGTGACAAGGAGCAACAA+AGG + chr8_3:21422423-21422442 None:intergenic 45.0%
ACACACTTGGCCATTAAGCT+AGG - chr8_3:21423139-21423158 Msa1281720:intron 45.0%
ACTCTAGGTGCCTAGCTTAA+TGG + chr8_3:21423152-21423171 None:intergenic 45.0%
GGAAACCAAGTGAACACAGA+TGG - chr8_3:21423205-21423224 Msa1281720:intron 45.0%
!!! ATAATTTAGTTTTTAATAAA+AGG + chr8_3:21422885-21422904 None:intergenic 5.0%
!!! ATAATTTAGTTTTTAATAAA+AGG + chr8_3:21422885-21422904 None:intergenic 5.0%
!!! AAAGGCCACTTTTGGCCTTC+TGG - chr8_3:21422394-21422413 Msa1281720:CDS 50.0%
!!! AAGGCCACTTTTGGCCTTCT+GGG - chr8_3:21422395-21422414 Msa1281720:CDS 50.0%
GAGCAACAAAGGAACCCAGA+AGG + chr8_3:21422412-21422431 None:intergenic 50.0%
CGTAGTGCCTGTGTGTGTAT+TGG + chr8_3:21422946-21422965 None:intergenic 50.0%
TACACACACAGGCACTACGT+TGG - chr8_3:21422947-21422966 Msa1281720:intron 50.0%
GCTTCCCATCTGTGTTCACT+TGG + chr8_3:21423213-21423232 None:intergenic 50.0%
!!! AAAGGCCACTTTTGGCCTTC+TGG - chr8_3:21422394-21422413 Msa1281720:CDS 50.0%
!!! AAGGCCACTTTTGGCCTTCT+GGG - chr8_3:21422395-21422414 Msa1281720:CDS 50.0%
GAGCAACAAAGGAACCCAGA+AGG + chr8_3:21422412-21422431 None:intergenic 50.0%
CGTAGTGCCTGTGTGTGTAT+TGG + chr8_3:21422946-21422965 None:intergenic 50.0%
TACACACACAGGCACTACGT+TGG - chr8_3:21422947-21422966 Msa1281720:intron 50.0%
GCTTCCCATCTGTGTTCACT+TGG + chr8_3:21423213-21423232 None:intergenic 50.0%
GGAACCCAGAAGGCCAAAAG+TGG + chr8_3:21422402-21422421 None:intergenic 55.0%
GGAACCCAGAAGGCCAAAAG+TGG + chr8_3:21422402-21422421 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 21422232 21423651 21422232 ID=Msa1281720;Name=Msa1281720
chr8_3 mRNA 21422232 21423651 21422232 ID=Msa1281720-mRNA-1;Parent=Msa1281720;Name=Msa1281720-mRNA-1;_AED=0.15;_eAED=0.16;_QI=140|1|0.5|1|1|1|2|0|185
chr8_3 exon 21422232 21422677 21422232 ID=Msa1281720-mRNA-1:exon:7830;Parent=Msa1281720-mRNA-1
chr8_3 exon 21423400 21423651 21423400 ID=Msa1281720-mRNA-1:exon:7829;Parent=Msa1281720-mRNA-1
chr8_3 five_prime_UTR 21423512 21423651 21423512 ID=Msa1281720-mRNA-1:five_prime_utr;Parent=Msa1281720-mRNA-1
chr8_3 CDS 21423400 21423511 21423400 ID=Msa1281720-mRNA-1:cds;Parent=Msa1281720-mRNA-1
chr8_3 CDS 21422232 21422677 21422232 ID=Msa1281720-mRNA-1:cds;Parent=Msa1281720-mRNA-1
Gene Sequence

>Msa1281720

ATGAGAAAAGCTTCCAATATGCAAAGGCCACTTTTGGCCTTCTGGGTTCCTTTGTTGCTCCTTGTCACCTTCTGTTATGCTACTTCTGTTGTAGCAAGAAATGATCCTTCAGGAAACCAAGTGAACACAGATGGGAAGCTTGCAAATGAAGAGACAACAAAGACAAACCTAGAAGGACATAATGAAGAAGAAAAATTCAAAGGATTTTTTCATCTAAAACACAAACTCAAAGGATATTTTCACCAAAAACCAATATTCAAGAAACCAATTCCATTTTACAAACCTATTCACAAAGACATTCCAATTTACAAACCTACACCAAAATACGTTCCAATCTATAAGCCTATCCACAAACCAATTCCCATTTACAAGCCTATTCCAAAGGTAATTCCAGTTTACAAGCCTGTTCCAATTTACAAGCCTATTCCAAAGGTTATTCCAATTTACAAGCCTGTTCCAGTTTACAAGCCTATTCCAAAGGTAATTCCAATTTACAAGCCTATTCCAATTTACAAACCTATTCCAAAGGAAATTCCCATTGTAAAGCCAATCCATTAA

Protein sequence

>Msa1281720

MRKASNMQRPLLAFWVPLLLLVTFCYATSVVARNDPSGNQVNTDGKLANEETTKTNLEGHNEEEKFKGFFHLKHKLKGYFHQKPIFKKPIPFYKPIHKDIPIYKPTPKYVPIYKPIHKPIPIYKPIPKVIPVYKPVPIYKPIPKVIPIYKPVPVYKPIPKVIPIYKPIPIYKPIPKEIPIVKPIH*