AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109950 MtrunA17_Chr1g0166711 98.314 593 10 0 1 593 1 593 0.0 1197
Msa0109950 MtrunA17_Chr1g0187241 81.026 585 107 3 1 582 1 584 0.0 997
Msa0109950 MtrunA17_Chr1g0166791 75.385 585 143 1 9 592 8 592 0.0 920
Msa0109950 MtrunA17_Chr1g0166731 93.162 468 32 0 112 579 9 476 0.0 881
Msa0109950 MtrunA17_Chr1g0166741 72.260 584 154 2 1 583 3 579 0.0 855
Msa0109950 MtrunA17_Chr1g0166771 72.527 546 142 2 39 583 5 543 0.0 796
Msa0109950 MtrunA17_Chr7g0261771 63.351 573 205 4 2 570 6 577 0.0 767
Msa0109950 MtrunA17_Chr7g0261881 62.057 564 211 3 9 570 11 573 0.0 764
Msa0109950 MtrunA17_Chr7g0261811 61.879 564 212 3 9 570 11 573 0.0 756
Msa0109950 MtrunA17_Chr7g0261791 60.601 566 219 3 2 564 6 570 0.0 728
Msa0109950 MtrunA17_Chr7g0261851 61.837 566 213 3 1 564 4 568 0.0 718
Msa0109950 MtrunA17_Chr7g0261661 59.794 485 188 5 113 592 1 483 0.0 610
Msa0109950 MtrunA17_Chr3g0114501 52.241 580 269 4 9 584 6 581 0.0 608
Msa0109950 MtrunA17_Chr7g0261751 57.430 498 171 5 2 459 6 502 0.0 585
Msa0109950 MtrunA17_Chr8g0375311 45.884 571 296 3 1 561 12 579 0.0 536
Msa0109950 MtrunA17_Chr3g0104011 46.690 574 291 7 1 567 1 566 0.0 524
Msa0109950 MtrunA17_Chr8g0375291 44.742 561 298 3 2 556 20 574 1.74e-177 514
Msa0109950 MtrunA17_Chr7g0241741 44.974 567 300 5 10 570 7 567 1.19e-175 509
Msa0109950 MtrunA17_Chr8g0375351 42.576 559 312 2 9 561 24 579 7.38e-172 500
Msa0109950 MtrunA17_Chr4g0005901 44.583 563 300 5 8 564 15 571 2.06e-170 496
Msa0109950 MtrunA17_Chr8g0375321 42.576 559 312 2 9 561 21 576 2.94e-168 491
Msa0109950 MtrunA17_Chr8g0375341 42.397 559 313 2 9 561 24 579 3.42e-168 491
Msa0109950 MtrunA17_Chr8g0375331 43.575 537 294 2 9 539 8 541 1.28e-166 486
Msa0109950 MtrunA17_Chr7g0261731 63.478 345 122 3 2 343 6 349 3.37e-164 472
Msa0109950 MtrunA17_Chr8g0375361 43.268 557 307 2 11 561 25 578 4.14e-157 462
Msa0109950 MtrunA17_Chr7g0240381 41.391 575 310 8 9 572 13 571 1.34e-153 453
Msa0109950 MtrunA17_Chr3g0077151 40.741 567 301 6 3 564 7 543 5.17e-149 441
Msa0109950 MtrunA17_Chr4g0014871 40.108 556 309 7 13 564 18 553 4.74e-146 433
Msa0109950 MtrunA17_Chr4g0014791 41.727 556 297 7 13 564 17 549 5.03e-145 431
Msa0109950 MtrunA17_Chr3g0112611 40.068 584 329 10 13 584 20 594 6.69e-145 432
Msa0109950 MtrunA17_Chr3g0112671 39.964 558 313 6 13 565 21 561 2.26e-144 430
Msa0109950 MtrunA17_Chr3g0142101 39.892 554 315 8 13 561 23 563 5.04e-144 429
Msa0109950 MtrunA17_Chr4g0008651 39.324 562 325 8 9 564 18 569 1.97e-143 428
Msa0109950 MtrunA17_Chr4g0014781 40.647 556 305 8 13 564 17 551 3.02e-141 421
Msa0109950 MtrunA17_Chr3g0142091 40.603 564 321 7 2 561 3 556 1.82e-140 419
Msa0109950 MtrunA17_Chr4g0014841 41.219 558 301 8 11 564 15 549 2.26e-140 419
Msa0109950 MtrunA17_Chr5g0399061 39.199 574 330 7 17 580 19 583 3.43e-139 417
Msa0109950 MtrunA17_Chr5g0422881 39.783 553 324 5 19 564 14 564 3.11e-138 414
Msa0109950 MtrunA17_Chr4g0014801 40.468 556 306 8 13 564 17 551 5.49e-137 410
Msa0109950 MtrunA17_Chr5g0400371 35.932 590 359 7 9 589 96 675 4.51e-133 404
Msa0109950 MtrunA17_Chr5g0399071 39.212 584 335 7 11 579 7 585 1.01e-132 400
Msa0109950 MtrunA17_Chr4g0054891 36.477 562 341 5 9 561 94 648 6.09e-132 400
Msa0109950 MtrunA17_Chr4g0056431 39.071 581 334 7 8 577 9 580 4.44e-130 394
Msa0109950 MtrunA17_Chr7g0217461 36.414 541 330 5 11 540 10 547 1.28e-127 387
Msa0109950 MtrunA17_Chr7g0255621 35.826 575 351 9 25 586 20 589 7.68e-126 383
Msa0109950 MtrunA17_Chr7g0214461 35.189 557 349 5 25 577 79 627 9.14e-125 381
Msa0109950 MtrunA17_Chr1g0213711 34.806 566 351 7 25 585 21 573 7.25e-123 375
Msa0109950 MtrunA17_Chr5g0439381 38.356 584 325 8 12 579 15 579 8.18e-123 375
Msa0109950 MtrunA17_Chr8g0353031 38.710 558 307 6 26 569 19 555 8.92e-123 374
Msa0109950 MtrunA17_Chr4g0063591 38.859 561 323 5 10 561 7 556 2.90e-122 373
Msa0109950 MtrunA17_Chr7g0218851 35.149 569 356 5 18 580 39 600 7.02e-122 373
Msa0109950 MtrunA17_Chr7g0255601 35.195 591 359 11 13 588 15 596 7.77e-122 373
Msa0109950 MtrunA17_Chr7g0255611 35.169 563 349 7 12 564 18 574 8.09e-122 372
Msa0109950 MtrunA17_Chr5g0415791 36.620 568 347 6 25 581 29 594 2.02e-120 369
Msa0109950 MtrunA17_Chr2g0284701 36.014 572 348 7 13 566 19 590 3.22e-118 363
Msa0109950 MtrunA17_Chr3g0133341 35.472 561 347 6 21 573 10 563 5.64e-116 356
Msa0109950 MtrunA17_Chr8g0362711 34.683 568 347 6 14 565 13 572 2.38e-115 355
Msa0109950 MtrunA17_Chr7g0214731 35.752 565 348 8 16 566 51 614 1.49e-114 355
Msa0109950 MtrunA17_Chr4g0011041 33.391 575 357 8 2 561 15 578 3.94e-111 344
Msa0109950 MtrunA17_Chr5g0415961 34.315 577 355 8 7 566 5 574 4.89e-110 341
Msa0109950 MtrunA17_Chr4g0014861 40.094 424 242 5 145 564 13 428 1.76e-108 332
Msa0109950 MtrunA17_Chr2g0276751 35.366 574 345 9 1 568 14 567 2.07e-108 337
Msa0109950 MtrunA17_Chr4g0011471 34.259 540 331 6 36 561 27 556 1.10e-103 325
Msa0109950 MtrunA17_Chr1g0193391 32.517 572 363 10 13 576 3 559 6.65e-102 321
Msa0109950 MtrunA17_Chr4g0060001 33.279 610 375 11 1 586 1 602 7.25e-101 318
Msa0109950 MtrunA17_Chr8g0390331 31.944 576 368 8 24 588 14 576 2.17e-99 313
Msa0109950 MtrunA17_Chr7g0271221 32.753 574 366 7 12 580 4 562 4.64e-99 313
Msa0109950 MtrunA17_Chr4g0059971 32.605 549 351 7 31 564 40 584 1.11e-97 310
Msa0109950 MtrunA17_Chr4g0059991 32.920 565 361 6 31 580 28 589 2.60e-97 309
Msa0109950 MtrunA17_Chr3g0082631 38.526 475 247 8 109 564 11 459 4.36e-97 304
Msa0109950 MtrunA17_Chr4g0059981 31.707 615 372 8 6 584 2 604 2.41e-96 306
Msa0109950 MtrunA17_Chr8g0379971 32.609 598 366 11 1 566 1 593 2.85e-93 298
Msa0109950 MtrunA17_Chr8g0362781 31.570 567 362 11 18 565 23 582 3.68e-93 298
Msa0109950 MtrunA17_Chr7g0240271 30.993 584 384 6 12 582 11 588 8.80e-93 296
Msa0109950 MtrunA17_Chr6g0451841 32.799 561 324 14 32 570 12 541 1.02e-92 295
Msa0109950 MtrunA17_Chr1g0157601 32.234 546 346 9 29 561 19 553 1.32e-91 293
Msa0109950 MtrunA17_Chr8g0362801 35.043 468 289 7 113 568 1 465 1.82e-91 290
Msa0109950 MtrunA17_Chr4g0069581 32.717 541 348 6 42 578 3 531 1.39e-90 290
Msa0109950 MtrunA17_Chr1g0147631 31.942 551 350 10 25 561 25 564 3.55e-88 285
Msa0109950 MtrunA17_Chr2g0331511 31.661 578 355 16 36 591 32 591 2.63e-86 281
Msa0109950 MtrunA17_Chr8g0379991 32.513 569 333 11 46 566 1 566 4.49e-86 279
Msa0109950 MtrunA17_Chr2g0331471 32.418 546 334 13 36 561 99 629 3.72e-85 280
Msa0109950 MtrunA17_Chr2g0331521 29.508 549 368 9 25 561 22 563 1.53e-84 275
Msa0109950 MtrunA17_Chr7g0261721 61.500 200 77 0 368 567 5 204 2.14e-84 263
Msa0109950 MtrunA17_Chr2g0331481 32.051 546 336 13 36 561 36 566 4.47e-82 270
Msa0109950 MtrunA17_Chr7g0240281 31.942 551 358 6 25 562 24 570 4.79e-82 268
Msa0109950 MtrunA17_Chr2g0331461 31.597 576 361 14 36 592 36 597 1.76e-80 266
Msa0109950 MtrunA17_Chr1g0157611 30.488 574 372 12 13 570 2 564 2.39e-80 263
Msa0109950 MtrunA17_Chr1g0157621 32.197 528 335 11 46 561 1 517 2.96e-79 260
Msa0109950 MtrunA17_Chr3g0142111 41.751 297 167 3 13 307 34 326 3.31e-78 251
Msa0109950 MtrunA17_Chr4g0003761 29.474 570 380 11 21 578 27 586 3.08e-77 256
Msa0109950 MtrunA17_Chr7g0235521 32.359 479 297 7 113 570 1 473 3.54e-74 244
Msa0109950 MtrunA17_Chr7g0240211 32.150 479 298 7 113 570 1 473 1.76e-72 240
Msa0109950 MtrunA17_Chr7g0240181 32.150 479 298 7 113 570 1 473 2.17e-72 240
Msa0109950 MtrunA17_Chr7g0240131 31.942 479 299 7 113 570 1 473 3.91e-72 239
Msa0109950 MtrunA17_Chr2g0326211 28.371 571 365 10 13 564 2 547 5.01e-72 241
Msa0109950 MtrunA17_Chr2g0325951 28.571 567 369 9 13 564 2 547 5.86e-72 241
Msa0109950 MtrunA17_Chr1g0166721 83.846 130 16 1 1 130 1 125 3.74e-70 223
Msa0109950 MtrunA17_Chr2g0325961 28.196 571 367 11 13 564 2 548 3.55e-69 233
Msa0109950 MtrunA17_Chr7g0240151 31.106 479 285 8 113 570 1 455 1.91e-66 224
Msa0109950 MtrunA17_Chr1g0177591 28.364 550 354 13 25 561 42 564 5.64e-65 223
Msa0109950 MtrunA17_Chr5g0415841 29.247 465 310 6 113 564 1 459 3.01e-64 218
Msa0109950 MtrunA17_Chr7g0234381 32.667 450 269 7 112 561 3 418 8.66e-63 213
Msa0109950 MtrunA17_Chr7g0234151 32.667 450 269 7 112 561 3 418 1.97e-61 209
Msa0109950 MtrunA17_Chr7g0234181 32.589 448 266 7 115 561 1 413 2.77e-61 208
Msa0109950 MtrunA17_Chr3g0112631 38.488 291 165 6 300 583 3 286 3.64e-60 202
Msa0109950 MtrunA17_Chr3g0142121 38.258 264 151 5 301 561 11 265 6.65e-54 185
Msa0109950 MtrunA17_Chr1g0177611 28.704 432 280 10 142 561 20 435 2.88e-52 185
Msa0109950 MtrunA17_Chr7g0261831 57.419 155 63 3 255 407 1 154 6.16e-52 177
Msa0109950 MtrunA17_Chr4g0060071 33.444 302 192 4 270 565 1 299 8.86e-52 180
Msa0109950 MtrunA17_Chr1g0177631 28.176 433 281 10 142 561 20 435 1.46e-49 178
Msa0109950 MtrunA17_Chr7g0261671 66.964 112 35 1 2 111 7 118 3.70e-48 164
Msa0109950 MtrunA17_Chr3g0112651 39.474 190 108 2 112 301 21 203 1.49e-42 152
Msa0109950 MtrunA17_Chr4g0014851 45.455 110 60 0 13 122 18 127 1.58e-26 105
Msa0109950 MtrunA17_Chr1g0147591 33.846 195 112 4 156 339 10 198 1.64e-25 104
Msa0109950 MtrunA17_Chr4g0060061 41.322 121 71 0 138 258 8 128 5.48e-25 100
Msa0109950 MtrunA17_Chr7g0261821 58.209 67 28 0 502 568 1 67 1.91e-24 96.7
Msa0109950 MtrunA17_Chr3g0112661 43.434 99 56 0 13 111 19 117 3.89e-21 89.7
Msa0109950 MtrunA17_Chr2g0326221 26.050 238 146 4 328 564 15 223 4.08e-17 80.9
Msa0109950 MtrunA17_Chr4g0060051 38.889 108 63 1 1 108 1 105 1.41e-16 76.6
Msa0109950 MtrunA17_Chr3g0082621 45.070 71 39 0 41 111 2 72 1.72e-14 69.3
Msa0109950 MtrunA17_Chr8g0362791 38.554 83 51 0 31 113 42 124 4.59e-14 69.7
Msa0109950 MtrunA17_Chr8g0382601 33.721 86 56 1 208 292 1 86 1.33e-11 60.8
Msa0109950 MtrunA17_Chr7g0261841 50.000 54 26 1 113 165 1 54 1.63e-11 60.8
Msa0109950 MtrunA17_Chr1g0166761 68.421 38 11 1 1 38 3 39 2.37e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109950 AT5G46050.1 68.924 576 175 4 9 582 9 582 0.0 804
Msa0109950 AT5G46040.1 64.948 582 197 5 9 588 9 585 0.0 748
Msa0109950 AT5G46050.2 68.432 472 145 4 113 582 1 470 0.0 649
Msa0109950 AT2G40460.1 53.521 568 251 6 1 566 1 557 0.0 611
Msa0109950 AT2G02040.1 45.217 575 302 4 1 565 12 583 0.0 537
Msa0109950 AT3G54140.1 46.167 574 294 7 1 567 1 566 0.0 526
Msa0109950 AT3G54140.2 46.167 574 294 7 1 567 1 566 0.0 526
Msa0109950 AT5G01180.2 44.870 575 294 6 1 564 1 563 1.50e-175 509
Msa0109950 AT5G01180.3 44.870 575 294 6 1 564 1 563 1.50e-175 509
Msa0109950 AT5G01180.1 44.870 575 294 6 1 564 1 563 1.50e-175 509
Msa0109950 AT1G62200.1 42.857 553 302 2 11 557 36 580 4.54e-169 494
Msa0109950 AT1G62200.2 40.893 582 301 3 11 557 36 609 5.70e-163 479
Msa0109950 AT1G62200.3 40.893 582 301 3 11 557 50 623 6.28e-163 479
Msa0109950 AT2G02020.1 42.468 551 276 5 10 556 25 538 6.81e-158 463
Msa0109950 AT3G53960.1 41.536 573 315 9 13 576 23 584 7.45e-150 445
Msa0109950 AT2G37900.1 39.177 559 319 6 13 565 24 567 4.67e-143 426
Msa0109950 AT3G54450.1 40.288 556 297 7 23 564 8 542 1.86e-142 424
Msa0109950 AT2G02020.2 39.383 551 272 7 10 556 25 517 2.08e-137 410
Msa0109950 AT1G22540.1 40.468 556 304 9 15 564 18 552 9.54e-137 410
Msa0109950 AT1G32450.1 37.167 600 350 9 9 585 19 614 7.04e-133 402
Msa0109950 AT1G12110.1 38.103 580 337 7 17 584 17 586 1.55e-132 400
Msa0109950 AT1G68570.1 38.783 575 338 7 17 581 15 585 1.19e-130 395
Msa0109950 AT1G68570.2 39.564 551 321 6 41 581 7 555 3.67e-130 393
Msa0109950 AT1G72140.1 36.934 574 323 8 2 565 9 553 1.29e-129 391
Msa0109950 AT2G26690.1 39.539 564 318 6 8 561 5 555 1.01e-128 390
Msa0109950 AT1G22550.1 39.092 573 320 10 2 564 6 559 1.62e-126 384
Msa0109950 AT2G37900.2 39.880 499 279 6 73 565 5 488 1.28e-125 379
Msa0109950 AT1G72120.1 39.007 564 313 9 9 564 12 552 2.23e-124 378
Msa0109950 AT1G22570.1 40.280 571 317 9 2 564 6 560 4.18e-123 375
Msa0109950 AT1G72125.1 38.968 562 320 8 9 564 12 556 4.75e-123 375
Msa0109950 AT4G21680.1 35.575 565 348 4 11 563 12 572 1.91e-122 374
Msa0109950 AT2G26690.2 39.548 531 298 6 41 561 5 522 3.04e-120 367
Msa0109950 AT1G72130.1 35.584 548 310 8 23 563 21 532 9.52e-120 365
Msa0109950 AT3G21670.1 36.394 599 343 8 12 591 11 590 2.13e-117 361
Msa0109950 AT2G26690.3 39.464 522 293 6 50 561 2 510 3.64e-117 358
Msa0109950 AT1G59740.1 35.826 575 355 6 9 577 23 589 3.95e-117 360
Msa0109950 AT5G19640.1 35.121 578 349 8 2 572 34 592 1.34e-116 360
Msa0109950 AT5G13400.1 36.444 568 350 6 16 572 52 619 6.42e-116 358
Msa0109950 AT1G22570.2 40.789 532 292 8 41 564 7 523 3.28e-115 353
Msa0109950 AT1G69870.1 34.888 579 357 7 24 592 48 616 1.64e-112 349
Msa0109950 AT1G69850.1 33.448 580 359 5 13 570 11 585 1.70e-111 345
Msa0109950 AT1G27040.1 33.514 552 362 3 13 563 13 560 6.31e-107 333
Msa0109950 AT1G27040.2 33.514 552 362 3 13 563 9 556 7.61e-107 333
Msa0109950 AT1G33440.1 35.472 561 341 8 9 561 20 567 2.92e-105 330
Msa0109950 AT1G27040.3 33.710 531 347 3 34 563 2 528 2.82e-103 323
Msa0109950 AT3G16180.1 33.154 558 348 9 21 561 16 565 8.92e-103 323
Msa0109950 AT1G18880.1 33.333 564 353 8 31 576 23 581 5.35e-99 313
Msa0109950 AT1G52190.1 31.734 542 349 8 36 561 30 566 3.93e-98 311
Msa0109950 AT1G27080.1 33.105 583 359 10 21 592 8 570 1.68e-95 304
Msa0109950 AT5G62730.1 31.217 567 356 6 13 566 42 587 7.92e-93 297
Msa0109950 AT1G72130.2 35.023 434 250 6 137 563 6 414 2.00e-91 288
Msa0109950 AT1G72130.3 35.023 434 250 6 137 563 6 414 2.00e-91 288
Msa0109950 AT5G14940.1 30.851 564 349 10 25 569 5 546 4.59e-91 291
Msa0109950 AT5G28470.2 32.428 552 349 11 23 561 13 553 9.74e-90 288
Msa0109950 AT5G62680.1 31.942 551 357 5 31 566 47 594 1.75e-89 289
Msa0109950 AT5G62730.2 31.261 547 342 7 33 566 3 528 4.33e-88 283
Msa0109950 AT3G25260.1 32.907 547 323 13 17 561 11 515 5.89e-88 282
Msa0109950 AT3G47960.1 32.062 577 364 8 31 584 65 636 1.79e-87 285
Msa0109950 AT1G27080.2 33.212 548 335 10 56 592 1 528 2.43e-87 281
Msa0109950 AT5G28470.1 32.246 552 348 12 23 561 13 551 1.01e-86 280
Msa0109950 AT3G45650.1 29.791 574 371 8 11 576 6 555 3.38e-83 271
Msa0109950 AT3G01350.1 29.983 577 350 12 24 569 3 556 1.01e-82 270
Msa0109950 AT3G45700.1 30.536 560 355 12 26 580 15 545 2.79e-82 268
Msa0109950 AT1G69860.1 33.149 543 339 8 31 564 22 549 3.97e-82 268
Msa0109950 AT3G45710.1 30.674 564 355 11 27 579 21 559 6.11e-82 268
Msa0109950 AT3G45680.1 31.261 563 348 13 13 564 8 542 1.17e-81 267
Msa0109950 AT3G45720.1 32.397 534 321 14 49 570 41 546 1.51e-81 266
Msa0109950 AT3G25280.1 31.330 549 335 9 17 561 11 521 2.19e-80 263
Msa0109950 AT3G45660.1 30.682 528 332 10 46 564 40 542 1.05e-78 259
Msa0109950 AT3G45660.3 30.682 528 332 10 46 564 40 542 1.05e-78 259
Msa0109950 AT3G45660.2 30.682 528 332 10 46 564 61 563 1.45e-78 259
Msa0109950 AT3G45650.2 28.500 600 371 9 11 576 6 581 1.02e-77 257
Msa0109950 AT3G45690.1 29.151 542 322 12 26 564 17 499 2.67e-69 233
Msa0109950 AT5G11570.1 26.993 552 323 14 13 561 2 476 2.19e-54 192
Msa0109950 AT2G38100.2 25.287 522 336 12 55 561 2 484 5.81e-39 150
Msa0109950 AT2G38100.1 25.287 522 336 12 55 561 18 500 1.43e-38 149
Msa0109950 AT2G38100.3 25.287 522 336 12 55 561 24 506 1.73e-38 149

Find 130 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTCATATAGTTCTTT+AGG 0.172531 1_3:-22129142 None:intergenic
ACTCCAAGAGATTAGTTTAT+TGG 0.175091 1_3:+22131292 Msa0109950:exon
ACGCCTACCTTGGCCGTTAT+TGG 0.203711 1_3:+22128147 Msa0109950:CDS
TTTGAGAGAATGGCTTATTA+TGG 0.210968 1_3:+22127996 Msa0109950:CDS
ATTTGGATCACTCCAATATT+AGG 0.239092 1_3:+22128110 Msa0109950:CDS
GTCTCCTCTACATGTGTAAC+TGG 0.243014 1_3:-22130482 None:intergenic
GATGGAACAGTTGATCTTAA+AGG 0.272047 1_3:+22125386 Msa0109950:CDS
TTCAACTACTCCATGTTCTT+TGG 0.279867 1_3:-22130840 None:intergenic
CATAATTCATATAGTGATTA+TGG 0.284425 1_3:+22130778 Msa0109950:CDS
AGAACTATATGAACTTGATT+TGG 0.287269 1_3:+22129147 Msa0109950:CDS
GATCATTCTTATCATTTGTT+TGG 0.294014 1_3:-22130504 None:intergenic
GAACATGGAGTAGTTGAAAA+TGG 0.302397 1_3:+22130845 Msa0109950:CDS
GAGATTAGTTTATTGGTTCT+TGG 0.309855 1_3:+22131299 Msa0109950:exon
CTAAAACAGAATTTGCAAAA+AGG 0.325782 1_3:-22128925 None:intergenic
GGATGTTCAGCATCTTTATT+GGG 0.330214 1_3:+22128900 Msa0109950:CDS
AAAATTCCACCAGCAAGTTT+AGG 0.331725 1_3:+22130629 Msa0109950:CDS
AGGGAGTCCCTTCACTAAAA+TGG 0.333057 1_3:+22129066 Msa0109950:CDS
CCAATTGGGTTGGTACCATT+TGG 0.335195 1_3:+22128093 Msa0109950:CDS
TGGATGTTCAGCATCTTTAT+TGG 0.338681 1_3:+22128899 Msa0109950:CDS
CAAGTTCATATAGTTCTTTA+GGG 0.338874 1_3:-22129141 None:intergenic
TGCTTCCTTTATCTACCTAT+TGG 0.339032 1_3:+22128181 Msa0109950:CDS
GCAACATAAGCACCTAATAT+TGG 0.342872 1_3:-22128122 None:intergenic
CAACTTTCACTGAAAGATAT+AGG 0.345759 1_3:+22130807 Msa0109950:CDS
TTGAGAGAATGGCTTATTAT+GGG 0.354991 1_3:+22127997 Msa0109950:CDS
CTTCTACCAATGTCACCAAT+TGG 0.359761 1_3:+22128078 Msa0109950:CDS
ATAAACTCTCATTCTTCAAT+TGG 0.378779 1_3:+22128876 Msa0109950:CDS
AAAGCTTGTTCCTTCTTTGT+TGG 0.383274 1_3:+22125443 Msa0109950:CDS
GGTTATGCACTTCCAACTCT+TGG 0.392524 1_3:+22128980 Msa0109950:CDS
GATAATGTGGGTTGGACTCT+TGG 0.393984 1_3:+22128959 Msa0109950:CDS
TCTTTAGGGTCACTAGGAAT+AGG 0.396153 1_3:-22129127 None:intergenic
ACATACCAATAGGTAGATAA+AGG 0.397338 1_3:-22128186 None:intergenic
ATTAATGTAGTAGCCATGAT+TGG 0.405581 1_3:-22130527 None:intergenic
CATGGAAGAGGGAAGGGTAG+TGG 0.408361 1_3:+22125349 Msa0109950:exon
AGATTAGTTTATTGGTTCTT+GGG 0.414050 1_3:+22131300 Msa0109950:exon
AAATTGAGTGCAACTTGGCT+TGG 0.417642 1_3:+22125288 Msa0109950:five_prime_UTR
ATGGAACAGTTGATCTTAAA+GGG 0.419108 1_3:+22125387 Msa0109950:CDS
GCACCAATGGTGGAAATGTT+AGG 0.424088 1_3:-22128815 None:intergenic
TTGTAAAGATTATGCAAAGA+TGG 0.426548 1_3:+22130705 Msa0109950:CDS
AATTGAGTGCAACTTGGCTT+GGG 0.428677 1_3:+22125289 Msa0109950:five_prime_UTR
TTCCTATGCCCATCCTTTGA+AGG 0.429082 1_3:-22130754 None:intergenic
ATTTGAGCAATCATTGTACT+AGG 0.430351 1_3:-22130551 None:intergenic
TCAAATCGAAAACCGGTTGT+TGG 0.432819 1_3:+22125420 Msa0109950:CDS
CTTCAAAATTGAGTGCAACT+TGG 0.435022 1_3:+22125283 None:intergenic
GGAACAAGCTTTCCAACAAC+CGG 0.435837 1_3:-22125432 None:intergenic
GAACCAATAAACTAATCTCT+TGG 0.436276 1_3:-22131295 None:intergenic
TTACAGCTAGTAGTGTTCTA+TGG 0.437692 1_3:+22128752 Msa0109950:CDS
TTCTACCAATGTCACCAATT+GGG 0.441799 1_3:+22128079 Msa0109950:CDS
AACTCTCATTCTTCAATTGG+TGG 0.444499 1_3:+22128879 Msa0109950:CDS
GTATGAGGTATTTGAGAGAA+TGG 0.453573 1_3:+22127986 Msa0109950:CDS
ACCACCTGAGTGTCATGAAA+TGG 0.453752 1_3:+22128700 Msa0109950:CDS
TTGTGGCTGCTATGAAGAAA+TGG 0.454963 1_3:+22129098 Msa0109950:CDS
TCCAGAAAGCATGAAAAGCT+TGG 0.466226 1_3:+22130976 Msa0109950:CDS
CCAAATGGTACCAACCCAAT+TGG 0.470302 1_3:-22128093 None:intergenic
CCTATTCTCAAATCGAAAAC+CGG 0.472178 1_3:+22125413 Msa0109950:CDS
AGTGCTTGCAGAAGAATTGA+AGG 0.472723 1_3:+22131240 Msa0109950:CDS
CCAGAAAGCATGAAAAGCTT+GGG 0.478426 1_3:+22130977 Msa0109950:CDS
TGAAGGAGAGTAATTCCTCT+AGG 0.480380 1_3:-22130737 None:intergenic
TACACTCTAGCAGTAGGAAC+AGG 0.482514 1_3:+22128782 Msa0109950:CDS
TATAGACATAAAGTACCTAC+AGG 0.484411 1_3:+22129046 Msa0109950:CDS
TCAATGACTAGCTTAGGCAT+TGG 0.491759 1_3:+22131010 Msa0109950:CDS
TATGTTGCTGACGCCTACCT+TGG 0.492497 1_3:+22128137 Msa0109950:CDS
CAAGCAATATTGCATGGAAG+AGG 0.493907 1_3:+22125337 Msa0109950:exon
TTGGAAGAGTATGCAAAGAA+AGG 0.494172 1_3:+22129166 Msa0109950:CDS
ACAAATGTACCTAAACTTGC+TGG 0.498006 1_3:-22130638 None:intergenic
GATAAGAATGATCCCAATCA+TGG 0.502771 1_3:+22130514 Msa0109950:CDS
AGTCTATATACAAGATAATG+TGG 0.504069 1_3:+22128946 Msa0109950:CDS
CTGAGGAACATGGTCACAAA+GGG 0.505036 1_3:+22131077 Msa0109950:CDS
AGTAAAATGAATATGCTCAA+TGG 0.506359 1_3:-22130878 None:intergenic
ATCAAATTGATCAGCACCAA+TGG 0.509830 1_3:-22128828 None:intergenic
ATGGAAGAGGGAAGGGTAGT+GGG 0.513774 1_3:+22125350 Msa0109950:CDS
GAAGGAGAGTAATTCCTCTA+GGG 0.517835 1_3:-22130736 None:intergenic
AAGCCTAACATTTCCACCAT+TGG 0.518336 1_3:+22128812 Msa0109950:CDS
TATAGTTCTTTAGGGTCACT+AGG 0.526463 1_3:-22129133 None:intergenic
TCTTATTCAATGACTAGCTT+AGG 0.530851 1_3:+22131004 Msa0109950:CDS
CTTATACCTCAATGTGGGAG+TGG 0.531336 1_3:-22129206 None:intergenic
AATTACTCTCCTTCAAAGGA+TGG 0.536918 1_3:+22130745 Msa0109950:CDS
TCCCTTCACTAAAATGGCTA+AGG 0.542023 1_3:+22129072 Msa0109950:CDS
TTAATGTAGTAGCCATGATT+GGG 0.543126 1_3:-22130526 None:intergenic
CTTAGTGTAGCCAAAGAACA+TGG 0.548011 1_3:+22130830 Msa0109950:CDS
GGTACTTTATGTCTATAGAA+TGG 0.550764 1_3:-22129040 None:intergenic
TTGATTCCACTCCCACATTG+AGG 0.555903 1_3:+22129200 Msa0109950:CDS
TTAATAAAGAAGCTTCATCA+AGG 0.556770 1_3:+22128044 Msa0109950:CDS
GATATTGCAAGTCCAAGAGT+TGG 0.562877 1_3:-22128992 None:intergenic
AAGACTAATTCAAGTACTAG+TGG 0.564192 1_3:+22130446 Msa0109950:CDS
ACAACACTTGATAGAGGCAT+CGG 0.564427 1_3:+22130599 Msa0109950:CDS
ACTAATCTCTTGGAGTCACT+TGG 0.564581 1_3:-22131285 None:intergenic
ACCAATGTCACCAATTGGGT+TGG 0.565849 1_3:+22128083 Msa0109950:CDS
GTGGGTGAGTTCACACAAGA+TGG 0.566308 1_3:+22125368 Msa0109950:CDS
AAATGGCATACCAACAAAGA+AGG 0.567725 1_3:-22125453 None:intergenic
TCTTGACACATGCCTTGTTG+AGG 0.569147 1_3:-22130427 None:intergenic
ACCAACCCAATTGGTGACAT+TGG 0.570728 1_3:-22128084 None:intergenic
CTCCTTCAAAGGATGGGCAT+AGG 0.570734 1_3:+22130752 Msa0109950:CDS
TAATATTGGAGTGATCCAAA+TGG 0.571433 1_3:-22128108 None:intergenic
CAGTAACAAAGGTCCAATAA+CGG 0.571576 1_3:-22128160 None:intergenic
GAGGAATTACTCTCCTTCAA+AGG 0.576375 1_3:+22130741 Msa0109950:CDS
CAACACTTGATAGAGGCATC+GGG 0.578243 1_3:+22130600 Msa0109950:CDS
AATGTACCTAAACTTGCTGG+TGG 0.578804 1_3:-22130635 None:intergenic
ATATACAAGATAATGTGGGT+TGG 0.583558 1_3:+22128951 Msa0109950:CDS
AGGAACATGGTCACAAAGGG+TGG 0.587585 1_3:+22131080 Msa0109950:CDS
AAGCAATATTGCATGGAAGA+GGG 0.588483 1_3:+22125338 Msa0109950:exon
TCTCCTCTACATGTGTAACT+GGG 0.590294 1_3:-22130481 None:intergenic
ATTACTCTCCTTCAAAGGAT+GGG 0.590754 1_3:+22130746 Msa0109950:CDS
TTCAGAACAAAACTCAGACA+TGG 0.594960 1_3:+22131363 Msa0109950:three_prime_UTR
AATATTGCATGGAAGAGGGA+AGG 0.595576 1_3:+22125342 Msa0109950:exon
CAAGGAACAACACTTGATAG+AGG 0.596087 1_3:+22130593 Msa0109950:CDS
GTCTATATACAAGATAATGT+GGG 0.599062 1_3:+22128947 Msa0109950:CDS
AATACACTATTTGTGAAGCA+AGG 0.599414 1_3:+22130575 Msa0109950:CDS
GGTCCAATAACGGCCAAGGT+AGG 0.599634 1_3:-22128150 None:intergenic
AAATTGATCAGCACCAATGG+TGG 0.600096 1_3:-22128825 None:intergenic
CAAAGGTCCAATAACGGCCA+AGG 0.604327 1_3:-22128154 None:intergenic
GATAAAGGAAGCAGTAACAA+AGG 0.605026 1_3:-22128171 None:intergenic
CATGGAGTAGTTGAAAATGG+AGG 0.610149 1_3:+22130848 Msa0109950:CDS
TAAAATGGCTAAGGTCATTG+TGG 0.611474 1_3:+22129081 Msa0109950:CDS
ATATTGCATGGAAGAGGGAA+GGG 0.612078 1_3:+22125343 Msa0109950:exon
ACTCTAGCAGTAGGAACAGG+TGG 0.614419 1_3:+22128785 Msa0109950:CDS
GCACTCTACACTCTAGCAGT+AGG 0.615235 1_3:+22128776 Msa0109950:CDS
TCCATTTCATGACACTCAGG+TGG 0.620788 1_3:-22128701 None:intergenic
AATCAAGATGAGAAGCATTG+AGG 0.621145 1_3:-22131114 None:intergenic
ACTGAGGAACATGGTCACAA+AGG 0.621642 1_3:+22131076 Msa0109950:CDS
ATGCCCAGTTACACATGTAG+AGG 0.628339 1_3:+22130478 Msa0109950:CDS
TCACACATCACTGAGGAACA+TGG 0.632557 1_3:+22131067 Msa0109950:CDS
TTAGTGAAGGGACTCCCTGT+AGG 0.634253 1_3:-22129061 None:intergenic
TGGAACTTATACCTCAATGT+GGG 0.647517 1_3:-22129211 None:intergenic
ACATCCATTTCATGACACTC+AGG 0.648427 1_3:-22128704 None:intergenic
AATGGATGTTACGAAATGCA+AGG 0.651107 1_3:+22128718 Msa0109950:CDS
ATGGAACTTATACCTCAATG+TGG 0.655784 1_3:-22129212 None:intergenic
ACTAATTCAAGTACTAGTGG+AGG 0.670493 1_3:+22130449 Msa0109950:CDS
TGTATGCAGATTCCTCAACA+AGG 0.703011 1_3:+22130415 Msa0109950:intron
ATAGACATAAAGTACCTACA+GGG 0.722644 1_3:+22129047 Msa0109950:CDS
AACAGTTTCACACATCACTG+AGG 0.750967 1_3:+22131060 Msa0109950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATGTTGTTAAAAA+TGG + chr1_3:22125514-22125533 Msa0109950:intron 10.0%
!!! TAAACATTTTAATTTTAAGT+AGG - chr1_3:22127309-22127328 None:intergenic 10.0%
!! AAAATGATTAATTAAGTAAA+TGG - chr1_3:22128578-22128597 None:intergenic 10.0%
!!! AATATCTATCATAATATTTT+TGG + chr1_3:22129009-22129028 Msa0109950:CDS 10.0%
!!! GAAAAATGAAATTTTAATAT+TGG + chr1_3:22129874-22129893 Msa0109950:intron 10.0%
!!! TATTACTTATTTTTTAATTG+TGG + chr1_3:22130161-22130180 Msa0109950:intron 10.0%
!! AAAATTGTTAAAAATGTAAG+TGG + chr1_3:22125653-22125672 Msa0109950:intron 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr1_3:22125968-22125987 Msa0109950:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr1_3:22125978-22125997 Msa0109950:intron 15.0%
!! AAATTGTAAATGATACAAAT+GGG - chr1_3:22126110-22126129 None:intergenic 15.0%
!! AAAATTGTAAATGATACAAA+TGG - chr1_3:22126111-22126130 None:intergenic 15.0%
!!! TACAATTTTAAGAAAGTAAT+TGG + chr1_3:22126122-22126141 Msa0109950:intron 15.0%
!!! AATTTTAGAAATAATATGAG+CGG + chr1_3:22126306-22126325 Msa0109950:intron 15.0%
!!! CATTTTTATCTAAAATAACA+AGG + chr1_3:22126503-22126522 Msa0109950:intron 15.0%
!! TATTATTATAGTGGTATATT+AGG - chr1_3:22126747-22126766 None:intergenic 15.0%
!! ATAAGGAATTATTATTATAG+TGG - chr1_3:22126756-22126775 None:intergenic 15.0%
!! AGAAAATTTGAGTATTTAAT+GGG - chr1_3:22127345-22127364 None:intergenic 15.0%
!! CAAAAAAAATCAATAATTGT+TGG - chr1_3:22127510-22127529 None:intergenic 15.0%
!!! TTTTTACAAAAAAGAATAAC+TGG - chr1_3:22127541-22127560 None:intergenic 15.0%
!! TCAGTATTATAAGTATATTT+AGG + chr1_3:22127709-22127728 Msa0109950:intron 15.0%
!!! GTATGATTTTATTTTTTAGA+GGG - chr1_3:22128302-22128321 None:intergenic 15.0%
!!! AGTATGATTTTATTTTTTAG+AGG - chr1_3:22128303-22128322 None:intergenic 15.0%
!!! AATACATATGGAAAATTTTA+CGG - chr1_3:22128395-22128414 None:intergenic 15.0%
!!! CCTATAAATATTTAGAATTT+TGG - chr1_3:22128554-22128573 None:intergenic 15.0%
!! CCAAAATTCTAAATATTTAT+AGG + chr1_3:22128551-22128570 Msa0109950:intron 15.0%
!! ATGTATTTGTGAAAAAAAAT+AGG - chr1_3:22129251-22129270 None:intergenic 15.0%
!!! TTATTATTTTTCTTAAGTTG+CGG - chr1_3:22129620-22129639 None:intergenic 15.0%
!! AAATACTCATAAAAACTTAA+TGG + chr1_3:22129665-22129684 Msa0109950:intron 15.0%
!! CAACTAATTAATAACATTGA+CGG - chr1_3:22125570-22125589 None:intergenic 20.0%
!!! TACTAATGAAAACCAATTTT+TGG - chr1_3:22125747-22125766 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr1_3:22125926-22125945 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr1_3:22126064-22126083 Msa0109950:intron 20.0%
!!! TTTTAAGAAAGTAATTGGTT+AGG + chr1_3:22126127-22126146 Msa0109950:intron 20.0%
!! TAAATAAGTGTGTATATTAG+TGG + chr1_3:22126236-22126255 Msa0109950:intron 20.0%
!!! TTTCTAAAATTCTCACTTTA+GGG - chr1_3:22126297-22126316 None:intergenic 20.0%
!!! ATTTCTAAAATTCTCACTTT+AGG - chr1_3:22126298-22126317 None:intergenic 20.0%
!! AAAGAACATTTATAATGAGA+CGG + chr1_3:22126342-22126361 Msa0109950:intron 20.0%
!!! AATGTTTTTATGCTATTGTT+TGG - chr1_3:22127053-22127072 None:intergenic 20.0%
!! GAGAAAATTTGAGTATTTAA+TGG - chr1_3:22127346-22127365 None:intergenic 20.0%
!! ATGTATGTAGATTCAATAAT+TGG - chr1_3:22127570-22127589 None:intergenic 20.0%
!! AATATAACAAGTTGTGAAAA+AGG + chr1_3:22127888-22127907 Msa0109950:intron 20.0%
!! CAAAAATCATTAAGTGTTAT+TGG + chr1_3:22127914-22127933 Msa0109950:intron 20.0%
!! ATAAATTAAGACATACCAAT+AGG - chr1_3:22128199-22128218 None:intergenic 20.0%
!! TTTATTATCTAGTGTGAAAT+AGG + chr1_3:22128214-22128233 Msa0109950:intron 20.0%
!! TTATTATCTAGTGTGAAATA+GGG + chr1_3:22128215-22128234 Msa0109950:intron 20.0%
!!! TTTGACAGAAAATTTTTACA+GGG - chr1_3:22128455-22128474 None:intergenic 20.0%
!!! TTTTGACAGAAAATTTTTAC+AGG - chr1_3:22128456-22128475 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+AGG + chr1_3:22128521-22128540 Msa0109950:intron 20.0%
!!! ATATAACCCTATTTTATTGT+TGG + chr1_3:22128600-22128619 Msa0109950:intron 20.0%
!! TAAAACAGAATTTGCAAAAA+GGG - chr1_3:22128927-22128946 None:intergenic 20.0%
!! AATAGGTATTAAATCAAACA+TGG - chr1_3:22129234-22129253 None:intergenic 20.0%
!! CATAGACTGTATTAAAAATA+TGG - chr1_3:22129845-22129864 None:intergenic 20.0%
!!! AATGCCTCAAATTTTTTTTT+TGG + chr1_3:22130246-22130265 Msa0109950:intron 20.0%
!! TATAAGTTTAGGAAAATTTG+AGG - chr1_3:22130353-22130372 None:intergenic 20.0%
!! AACAATGATAGTATAAGTTT+AGG - chr1_3:22130364-22130383 None:intergenic 20.0%
!! CATAATTCATATAGTGATTA+TGG + chr1_3:22130778-22130797 Msa0109950:CDS 20.0%
!!! TTTGTTCTGAAAAATACATT+TGG - chr1_3:22131354-22131373 None:intergenic 20.0%
! TTGTTAAAAATGTAAGTGGA+AGG + chr1_3:22125657-22125676 Msa0109950:intron 25.0%
! TCAATGAAAATGCCAAAAAT+TGG + chr1_3:22125732-22125751 Msa0109950:intron 25.0%
! ATGTGACAATTATAAAGGAA+CGG - chr1_3:22125834-22125853 None:intergenic 25.0%
! TGCAAATGTGACAATTATAA+AGG - chr1_3:22125839-22125858 None:intergenic 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + chr1_3:22125895-22125914 Msa0109950:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr1_3:22125935-22125954 None:intergenic 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr1_3:22125936-22125955 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr1_3:22125937-22125956 None:intergenic 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG + chr1_3:22126028-22126047 Msa0109950:intron 25.0%
! TAACAACTAGTGAAGTAATT+AGG + chr1_3:22126198-22126217 Msa0109950:intron 25.0%
!!! ATGTATTTTAATCAAACACC+CGG - chr1_3:22126390-22126409 None:intergenic 25.0%
!!! ATGAAGTTGAATTTTAGCAT+AGG - chr1_3:22126486-22126505 None:intergenic 25.0%
! ATAGATGAGTAAATTCTTGA+TGG + chr1_3:22126663-22126682 Msa0109950:intron 25.0%
! GTATATTAGGAATTCTTTCT+TGG - chr1_3:22126734-22126753 None:intergenic 25.0%
!! CAGATGAACAAGATTTTATA+AGG - chr1_3:22126773-22126792 None:intergenic 25.0%
! CTTATAAAATCTTGTTCATC+TGG + chr1_3:22126771-22126790 Msa0109950:intron 25.0%
!!! ACTCTTGTACTTTTTTTGAA+AGG + chr1_3:22126901-22126920 Msa0109950:intron 25.0%
!! TGTGATACTTTTCTTTTGAA+AGG - chr1_3:22126970-22126989 None:intergenic 25.0%
!!! TTCAAAAGAAAAGTATCACA+AGG + chr1_3:22126970-22126989 Msa0109950:intron 25.0%
!! TACTAGTTTATTTAACGAAG+AGG + chr1_3:22126993-22127012 Msa0109950:intron 25.0%
!!! TTTTTTACTTAAATCTCACG+CGG + chr1_3:22127089-22127108 Msa0109950:intron 25.0%
! ACCAACTATCAAATCTTAAA+TGG + chr1_3:22127388-22127407 Msa0109950:intron 25.0%
!! ACCATTTAAGATTTGATAGT+TGG - chr1_3:22127392-22127411 None:intergenic 25.0%
! ATCAAATCTTAAATGGTCAT+TGG + chr1_3:22127395-22127414 Msa0109950:intron 25.0%
! CAAAAAAGAATAACTGGATT+GGG - chr1_3:22127535-22127554 None:intergenic 25.0%
! ACAAAAAAGAATAACTGGAT+TGG - chr1_3:22127536-22127555 None:intergenic 25.0%
! ACGATAAAAATGAATCAACA+TGG - chr1_3:22127809-22127828 None:intergenic 25.0%
! TGATGTCACATCATTAAAAA+TGG + chr1_3:22127855-22127874 Msa0109950:intron 25.0%
!! TGACAATGAAATGTGTATTT+TGG + chr1_3:22127957-22127976 Msa0109950:intron 25.0%
! TTAATAAAGAAGCTTCATCA+AGG + chr1_3:22128044-22128063 Msa0109950:CDS 25.0%
!! TACATACGGAAAATTTTACA+AGG - chr1_3:22128364-22128383 None:intergenic 25.0%
!! TTACGGACTAAAAATACATA+CGG - chr1_3:22128378-22128397 None:intergenic 25.0%
! ACAAGGACTAAAAATACATA+TGG - chr1_3:22128407-22128426 None:intergenic 25.0%
!! TGTTGAAGGAAAATTTTACA+AGG - chr1_3:22128424-22128443 None:intergenic 25.0%
!! CATTTTCCTTTAGCATTTTA+GGG - chr1_3:22128487-22128506 None:intergenic 25.0%
!! ACATTTTCCTTTAGCATTTT+AGG - chr1_3:22128488-22128507 None:intergenic 25.0%
! ATTGGTCCAACAATAAAATA+GGG - chr1_3:22128609-22128628 None:intergenic 25.0%
! ATAAACTCTCATTCTTCAAT+TGG + chr1_3:22128876-22128895 Msa0109950:CDS 25.0%
! CTAAAACAGAATTTGCAAAA+AGG - chr1_3:22128928-22128947 None:intergenic 25.0%
! AGTCTATATACAAGATAATG+TGG + chr1_3:22128946-22128965 Msa0109950:CDS 25.0%
! GTCTATATACAAGATAATGT+GGG + chr1_3:22128947-22128966 Msa0109950:CDS 25.0%
!!! TCTATCATAATATTTTTGGC+AGG + chr1_3:22129013-22129032 Msa0109950:CDS 25.0%
! CAAGTTCATATAGTTCTTTA+GGG - chr1_3:22129144-22129163 None:intergenic 25.0%
! TCAAGTTCATATAGTTCTTT+AGG - chr1_3:22129145-22129164 None:intergenic 25.0%
! AGAACTATATGAACTTGATT+TGG + chr1_3:22129147-22129166 Msa0109950:CDS 25.0%
! ATTCGACTAAGTTTCAATTA+AGG + chr1_3:22129296-22129315 Msa0109950:intron 25.0%
! AAAAGAAAATGCATGTCATT+CGG + chr1_3:22129443-22129462 Msa0109950:intron 25.0%
!!! AAACCAAATGAGATTTTTTG+CGG - chr1_3:22129523-22129542 None:intergenic 25.0%
! TTTAATACAGTCTATGTTGT+TGG + chr1_3:22129849-22129868 Msa0109950:intron 25.0%
! TTAATACAGTCTATGTTGTT+GGG + chr1_3:22129850-22129869 Msa0109950:intron 25.0%
!! ATAGATGTTATGTTGGTAAA+TGG + chr1_3:22130222-22130241 Msa0109950:intron 25.0%
! ACCACCAAAAAAAAAATTTG+AGG - chr1_3:22130253-22130272 None:intergenic 25.0%
! GATCATTCTTATCATTTGTT+TGG - chr1_3:22130507-22130526 None:intergenic 25.0%
! TTGTAAAGATTATGCAAAGA+TGG + chr1_3:22130705-22130724 Msa0109950:CDS 25.0%
! AGTAAAATGAATATGCTCAA+TGG - chr1_3:22130881-22130900 None:intergenic 25.0%
! TTCCCATAAGTAAAAATTGA+GGG - chr1_3:22130904-22130923 None:intergenic 25.0%
!! TGATTACTACTATGCATTTT+TGG + chr1_3:22131132-22131151 Msa0109950:CDS 25.0%
!!! AGATTAGTTTATTGGTTCTT+GGG + chr1_3:22131300-22131319 Msa0109950:exon 25.0%
GAAAAACAAGCAATATTGCA+TGG + chr1_3:22125331-22125350 Msa0109950:exon 30.0%
ATGGAACAGTTGATCTTAAA+GGG + chr1_3:22125387-22125406 Msa0109950:CDS 30.0%
! GAGAAACTCAAGTTCAATTT+TGG - chr1_3:22125617-22125636 None:intergenic 30.0%
TTAAAAATGTAAGTGGAAGG+AGG + chr1_3:22125660-22125679 Msa0109950:intron 30.0%
! GTATTTTGCAATAACCACAA+CGG + chr1_3:22125764-22125783 Msa0109950:intron 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr1_3:22126072-22126091 Msa0109950:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr1_3:22126073-22126092 Msa0109950:intron 30.0%
AACATTTATAATGAGACGGA+GGG + chr1_3:22126346-22126365 Msa0109950:intron 30.0%
CTCATAGCATGAATACATTA+AGG + chr1_3:22126550-22126569 Msa0109950:intron 30.0%
GTATGTATAATGAGATATCC+AGG - chr1_3:22126577-22126596 None:intergenic 30.0%
TCATCTATTAATTTCGAACG+AGG - chr1_3:22126651-22126670 None:intergenic 30.0%
! ATGGATCATCTTCTTTTTGA+TGG + chr1_3:22126938-22126957 Msa0109950:intron 30.0%
! TGGATCATCTTCTTTTTGAT+GGG + chr1_3:22126939-22126958 Msa0109950:intron 30.0%
! TTTTTACTTAAATCTCACGC+GGG + chr1_3:22127090-22127109 Msa0109950:intron 30.0%
TCTCACACAAAGTTCTTAAA+CGG + chr1_3:22127211-22127230 Msa0109950:intron 30.0%
TTTGAGTATTTAATGGGACA+AGG - chr1_3:22127339-22127358 None:intergenic 30.0%
! CCTTATGTGGTACTTTTATT+CGG - chr1_3:22127368-22127387 None:intergenic 30.0%
GTGTAATTGTTATAGATTGG+CGG + chr1_3:22127446-22127465 Msa0109950:intron 30.0%
TGTCACATCATTAAAAATGG+AGG + chr1_3:22127858-22127877 Msa0109950:intron 30.0%
GTCAACAATATGATTCAATG+TGG - chr1_3:22127941-22127960 None:intergenic 30.0%
TTTGAGAGAATGGCTTATTA+TGG + chr1_3:22127996-22128015 Msa0109950:CDS 30.0%
TTGAGAGAATGGCTTATTAT+GGG + chr1_3:22127997-22128016 Msa0109950:CDS 30.0%
TAATATTGGAGTGATCCAAA+TGG - chr1_3:22128111-22128130 None:intergenic 30.0%
ATTTGGATCACTCCAATATT+AGG + chr1_3:22128110-22128129 Msa0109950:CDS 30.0%
ACATACCAATAGGTAGATAA+AGG - chr1_3:22128189-22128208 None:intergenic 30.0%
ACAGGGATTAAAAATGTTGA+AGG - chr1_3:22128438-22128457 None:intergenic 30.0%
! TTTTGTCCCTAAAATGCTAA+AGG + chr1_3:22128478-22128497 Msa0109950:intron 30.0%
TGCTAAAGGAAAATGTTACA+TGG + chr1_3:22128492-22128511 Msa0109950:intron 30.0%
CATTGGTCCAACAATAAAAT+AGG - chr1_3:22128610-22128629 None:intergenic 30.0%
ATTCAAATGTGACCTCAAAT+TGG + chr1_3:22128630-22128649 Msa0109950:intron 30.0%
ATATACAAGATAATGTGGGT+TGG + chr1_3:22128951-22128970 Msa0109950:CDS 30.0%
GGTACTTTATGTCTATAGAA+TGG - chr1_3:22129043-22129062 None:intergenic 30.0%
! TATAGACATAAAGTACCTAC+AGG + chr1_3:22129046-22129065 Msa0109950:CDS 30.0%
! ATAGACATAAAGTACCTACA+GGG + chr1_3:22129047-22129066 Msa0109950:CDS 30.0%
CAATTAAGGACAAATCATTC+AGG + chr1_3:22129310-22129329 Msa0109950:intron 30.0%
TATTAAACCTCCAATTCCTA+GGG - chr1_3:22129424-22129443 None:intergenic 30.0%
TTATTAAACCTCCAATTCCT+AGG - chr1_3:22129425-22129444 None:intergenic 30.0%
!!! AATGAGATTTTTTGCGGTTT+CGG - chr1_3:22129517-22129536 None:intergenic 30.0%
AAACCGCAAAAAATCTCATT+TGG + chr1_3:22129517-22129536 Msa0109950:intron 30.0%
GCAAAAAATCTCATTTGGTT+TGG + chr1_3:22129522-22129541 Msa0109950:intron 30.0%
!!! CAATTTTTTACTCAACCACA+TGG + chr1_3:22129557-22129576 Msa0109950:intron 30.0%
!! ATTTTTCTTAAGTTGCGGTT+TGG - chr1_3:22129615-22129634 None:intergenic 30.0%
TTTGTCTACGTGACATATAT+AGG - chr1_3:22129648-22129667 None:intergenic 30.0%
! AGATAAAAAAGCATGTGGTT+CGG - chr1_3:22130065-22130084 None:intergenic 30.0%
!!! TGCTTTTTTATCTCACGATT+AGG + chr1_3:22130072-22130091 Msa0109950:intron 30.0%
CAACTAGATAGATGTTATGT+TGG + chr1_3:22130215-22130234 Msa0109950:intron 30.0%
!!! GCCTCAAATTTTTTTTTTGG+TGG + chr1_3:22130249-22130268 Msa0109950:intron 30.0%
!!! AATTTTTTTTTTGGTGGTCG+AGG + chr1_3:22130255-22130274 Msa0109950:intron 30.0%
GACAATGCATAATATATGCA+GGG - chr1_3:22130294-22130313 None:intergenic 30.0%
AAGACTAATTCAAGTACTAG+TGG + chr1_3:22130446-22130465 Msa0109950:CDS 30.0%
TTAATGTAGTAGCCATGATT+GGG - chr1_3:22130529-22130548 None:intergenic 30.0%
ATTAATGTAGTAGCCATGAT+TGG - chr1_3:22130530-22130549 None:intergenic 30.0%
ATTTGAGCAATCATTGTACT+AGG - chr1_3:22130554-22130573 None:intergenic 30.0%
AATACACTATTTGTGAAGCA+AGG + chr1_3:22130575-22130594 Msa0109950:CDS 30.0%
CAACTTTCACTGAAAGATAT+AGG + chr1_3:22130807-22130826 Msa0109950:CDS 30.0%
! ACTCCCTCAATTTTTACTTA+TGG + chr1_3:22130898-22130917 Msa0109950:CDS 30.0%
! CTCCCTCAATTTTTACTTAT+GGG + chr1_3:22130899-22130918 Msa0109950:CDS 30.0%
GTTCCCATAAGTAAAAATTG+AGG - chr1_3:22130905-22130924 None:intergenic 30.0%
!! TCTTATTCAATGACTAGCTT+AGG + chr1_3:22131004-22131023 Msa0109950:CDS 30.0%
!! ACTCCAAGAGATTAGTTTAT+TGG + chr1_3:22131292-22131311 Msa0109950:exon 30.0%
GAACCAATAAACTAATCTCT+TGG - chr1_3:22131298-22131317 None:intergenic 30.0%
!! GAGATTAGTTTATTGGTTCT+TGG + chr1_3:22131299-22131318 Msa0109950:exon 30.0%
AAGCAATATTGCATGGAAGA+GGG + chr1_3:22125338-22125357 Msa0109950:exon 35.0%
GATGGAACAGTTGATCTTAA+AGG + chr1_3:22125386-22125405 Msa0109950:CDS 35.0%
CCTATTCTCAAATCGAAAAC+CGG + chr1_3:22125413-22125432 Msa0109950:CDS 35.0%
! AAAGCTTGTTCCTTCTTTGT+TGG + chr1_3:22125443-22125462 Msa0109950:CDS 35.0%
AAATGGCATACCAACAAAGA+AGG - chr1_3:22125456-22125475 None:intergenic 35.0%
! AGAATGGCTTGTGGTATATA+AGG + chr1_3:22125685-22125704 Msa0109950:intron 35.0%
GGTATATAAGGATGGTCTAT+TGG + chr1_3:22125697-22125716 Msa0109950:intron 35.0%
ATAATGTGTCTTGCAAACTG+TGG - chr1_3:22125806-22125825 None:intergenic 35.0%
GACAATTATAAAGGAACGGA+GGG - chr1_3:22125830-22125849 None:intergenic 35.0%
TGACAATTATAAAGGAACGG+AGG - chr1_3:22125831-22125850 None:intergenic 35.0%
GAACATTTATAATGAGACGG+AGG + chr1_3:22126345-22126364 Msa0109950:intron 35.0%
GAGTACTACTCAACAAATTC+CGG + chr1_3:22126368-22126387 Msa0109950:intron 35.0%
AGTACTACTCAACAAATTCC+GGG + chr1_3:22126369-22126388 Msa0109950:intron 35.0%
TGAGTAAATTCTTGATGGAG+AGG + chr1_3:22126668-22126687 Msa0109950:intron 35.0%
TAAATTCTTGATGGAGAGGT+AGG + chr1_3:22126672-22126691 Msa0109950:intron 35.0%
! GGATCATCTTCTTTTTGATG+GGG + chr1_3:22126940-22126959 Msa0109950:intron 35.0%
TTATTTAACGAAGAGGTCCA+TGG + chr1_3:22127000-22127019 Msa0109950:intron 35.0%
ATGCTTACTTACTTGTACCA+TGG - chr1_3:22127020-22127039 None:intergenic 35.0%
ATGGTACAAGTAAGTAAGCA+TGG + chr1_3:22127019-22127038 Msa0109950:intron 35.0%
!! CCGAATAAAAGTACCACATA+AGG + chr1_3:22127365-22127384 Msa0109950:intron 35.0%
! TTTGATAGTTGGTCCTTATG+TGG - chr1_3:22127381-22127400 None:intergenic 35.0%
! TCATTGGTTAGATACCCATT+GGG + chr1_3:22127411-22127430 Msa0109950:intron 35.0%
GGGGTGTAATTGTTATAGAT+TGG + chr1_3:22127443-22127462 Msa0109950:intron 35.0%
TCCAAAAGTCGTCTTAGATT+TGG + chr1_3:22127774-22127793 Msa0109950:intron 35.0%
!! ACCAAATCTAAGACGACTTT+TGG - chr1_3:22127778-22127797 None:intergenic 35.0%
! GTATGAGGTATTTGAGAGAA+TGG + chr1_3:22127986-22128005 Msa0109950:CDS 35.0%
TTCTACCAATGTCACCAATT+GGG + chr1_3:22128079-22128098 Msa0109950:CDS 35.0%
GCAACATAAGCACCTAATAT+TGG - chr1_3:22128125-22128144 None:intergenic 35.0%
CAGTAACAAAGGTCCAATAA+CGG - chr1_3:22128163-22128182 None:intergenic 35.0%
GATAAAGGAAGCAGTAACAA+AGG - chr1_3:22128174-22128193 None:intergenic 35.0%
TGCTTCCTTTATCTACCTAT+TGG + chr1_3:22128181-22128200 Msa0109950:CDS 35.0%
TGAGGTCACATTTGAATCAT+TGG - chr1_3:22128627-22128646 None:intergenic 35.0%
AATGGATGTTACGAAATGCA+AGG + chr1_3:22128718-22128737 Msa0109950:CDS 35.0%
TTACAGCTAGTAGTGTTCTA+TGG + chr1_3:22128752-22128771 Msa0109950:CDS 35.0%
ATCAAATTGATCAGCACCAA+TGG - chr1_3:22128831-22128850 None:intergenic 35.0%
AACTCTCATTCTTCAATTGG+TGG + chr1_3:22128879-22128898 Msa0109950:CDS 35.0%
TGGATGTTCAGCATCTTTAT+TGG + chr1_3:22128899-22128918 Msa0109950:CDS 35.0%
GGATGTTCAGCATCTTTATT+GGG + chr1_3:22128900-22128919 Msa0109950:CDS 35.0%
!! ACCTTAGCCATTTTAGTGAA+GGG - chr1_3:22129076-22129095 None:intergenic 35.0%
TAAAATGGCTAAGGTCATTG+TGG + chr1_3:22129081-22129100 Msa0109950:CDS 35.0%
!! TATAGTTCTTTAGGGTCACT+AGG - chr1_3:22129136-22129155 None:intergenic 35.0%
! TTGGAAGAGTATGCAAAGAA+AGG + chr1_3:22129166-22129185 Msa0109950:CDS 35.0%
TGGAACTTATACCTCAATGT+GGG - chr1_3:22129214-22129233 None:intergenic 35.0%
ATGGAACTTATACCTCAATG+TGG - chr1_3:22129215-22129234 None:intergenic 35.0%
TGAAACTTAGTCGAATCACT+TGG - chr1_3:22129292-22129311 None:intergenic 35.0%
! TGGTAAGTAAAGGTTGGTTA+AGG - chr1_3:22129367-22129386 None:intergenic 35.0%
GAAAGAGGACTCTAGTAAAT+TGG - chr1_3:22129402-22129421 None:intergenic 35.0%
TATGTCTTGTGTTGTATGCT+AGG + chr1_3:22129466-22129485 Msa0109950:intron 35.0%
ATGTCTTGTGTTGTATGCTA+GGG + chr1_3:22129467-22129486 Msa0109950:intron 35.0%
!!! ATTTTTTGCGGTTTCGGTTT+GGG - chr1_3:22129511-22129530 None:intergenic 35.0%
AAATCGCAAACAAAACCATG+TGG - chr1_3:22129575-22129594 None:intergenic 35.0%
CAAATCAATGCAACTTGGAT+TGG - chr1_3:22130007-22130026 None:intergenic 35.0%
!! CAATCCAAGTTGCATTGATT+TGG + chr1_3:22130005-22130024 Msa0109950:intron 35.0%
CAAACCAAATCAATGCAACT+TGG - chr1_3:22130012-22130031 None:intergenic 35.0%
!! CAAGTTGCATTGATTTGGTT+TGG + chr1_3:22130010-22130029 Msa0109950:intron 35.0%
! TCGTGAGATAAAAAAGCATG+TGG - chr1_3:22130070-22130089 None:intergenic 35.0%
TGGACTTATCATGTCAAGTT+TGG + chr1_3:22130181-22130200 Msa0109950:intron 35.0%
GGACAATGCATAATATATGC+AGG - chr1_3:22130295-22130314 None:intergenic 35.0%
ACTAATTCAAGTACTAGTGG+AGG + chr1_3:22130449-22130468 Msa0109950:CDS 35.0%
GATAAGAATGATCCCAATCA+TGG + chr1_3:22130514-22130533 Msa0109950:CDS 35.0%
AAAATTCCACCAGCAAGTTT+AGG + chr1_3:22130629-22130648 Msa0109950:CDS 35.0%
ACAAATGTACCTAAACTTGC+TGG - chr1_3:22130641-22130660 None:intergenic 35.0%
AATTACTCTCCTTCAAAGGA+TGG + chr1_3:22130745-22130764 Msa0109950:CDS 35.0%
ATTACTCTCCTTCAAAGGAT+GGG + chr1_3:22130746-22130765 Msa0109950:CDS 35.0%
TTCAACTACTCCATGTTCTT+TGG - chr1_3:22130843-22130862 None:intergenic 35.0%
GAACATGGAGTAGTTGAAAA+TGG + chr1_3:22130845-22130864 Msa0109950:CDS 35.0%
!! AACAGCTGATGCATTTTTAG+AGG + chr1_3:22130922-22130941 Msa0109950:CDS 35.0%
!! AATCAAGATGAGAAGCATTG+AGG - chr1_3:22131117-22131136 None:intergenic 35.0%
! TTCTTCTGCAAGCACTTTTA+TGG - chr1_3:22131236-22131255 None:intergenic 35.0%
TTCAGAACAAAACTCAGACA+TGG + chr1_3:22131363-22131382 Msa0109950:three_prime_UTR 35.0%
AAATTGAGTGCAACTTGGCT+TGG + chr1_3:22125288-22125307 Msa0109950:five_prime_UTR 40.0%
AATTGAGTGCAACTTGGCTT+GGG + chr1_3:22125289-22125308 Msa0109950:five_prime_UTR 40.0%
CAAGCAATATTGCATGGAAG+AGG + chr1_3:22125337-22125356 Msa0109950:exon 40.0%
AATATTGCATGGAAGAGGGA+AGG + chr1_3:22125342-22125361 Msa0109950:exon 40.0%
ATATTGCATGGAAGAGGGAA+GGG + chr1_3:22125343-22125362 Msa0109950:exon 40.0%
!! CCGGTTTTCGATTTGAGAAT+AGG - chr1_3:22125416-22125435 None:intergenic 40.0%
TCAAATCGAAAACCGGTTGT+TGG + chr1_3:22125420-22125439 Msa0109950:CDS 40.0%
TAAGTGGAAGGAGGTAAGAA+TGG + chr1_3:22125669-22125688 Msa0109950:intron 40.0%
! TGGCTTGTGGTATATAAGGA+TGG + chr1_3:22125689-22125708 Msa0109950:intron 40.0%
GCATGAATACATTAAGGACC+TGG + chr1_3:22126556-22126575 Msa0109950:intron 40.0%
!!! TTTTTGAAAGGAGTACCCAC+TGG + chr1_3:22126913-22126932 Msa0109950:intron 40.0%
GAAGATGATCCATATCCAGT+GGG - chr1_3:22126931-22126950 None:intergenic 40.0%
AGAAGATGATCCATATCCAG+TGG - chr1_3:22126932-22126951 None:intergenic 40.0%
AATTCAATCCGTCAAACCCT+AGG + chr1_3:22127187-22127206 Msa0109950:intron 40.0%
GAACTTTGTGTGAGATCCTA+GGG - chr1_3:22127206-22127225 None:intergenic 40.0%
AGAACTTTGTGTGAGATCCT+AGG - chr1_3:22127207-22127226 None:intergenic 40.0%
! GTCATTGGTTAGATACCCAT+TGG + chr1_3:22127410-22127429 Msa0109950:intron 40.0%
!!! CGACTTTTGGAACAAGAATG+TGG - chr1_3:22127765-22127784 None:intergenic 40.0%
!!! GTATTTTGGTGCAGTGTATG+AGG + chr1_3:22127971-22127990 Msa0109950:intron 40.0%
CTTCTACCAATGTCACCAAT+TGG + chr1_3:22128078-22128097 Msa0109950:CDS 40.0%
AAATGTGACCTCAAATTGGC+AGG + chr1_3:22128634-22128653 Msa0109950:intron 40.0%
AATGTGACCTCAAATTGGCA+GGG + chr1_3:22128635-22128654 Msa0109950:intron 40.0%
ACATCCATTTCATGACACTC+AGG - chr1_3:22128707-22128726 None:intergenic 40.0%
AAGCCTAACATTTCCACCAT+TGG + chr1_3:22128812-22128831 Msa0109950:CDS 40.0%
AAATTGATCAGCACCAATGG+TGG - chr1_3:22128828-22128847 None:intergenic 40.0%
GATATTGCAAGTCCAAGAGT+TGG - chr1_3:22128995-22129014 None:intergenic 40.0%
TCCCTTCACTAAAATGGCTA+AGG + chr1_3:22129072-22129091 Msa0109950:CDS 40.0%
!! GACCTTAGCCATTTTAGTGA+AGG - chr1_3:22129077-22129096 None:intergenic 40.0%
TTGTGGCTGCTATGAAGAAA+TGG + chr1_3:22129098-22129117 Msa0109950:CDS 40.0%
!! TCTTTAGGGTCACTAGGAAT+AGG - chr1_3:22129130-22129149 None:intergenic 40.0%
! CTCTGTTGGTAAGTAAAGGT+TGG - chr1_3:22129373-22129392 None:intergenic 40.0%
! CTTGCTCTGTTGGTAAGTAA+AGG - chr1_3:22129377-22129396 None:intergenic 40.0%
! TAAATTGGAGCTTGCTCTGT+TGG - chr1_3:22129387-22129406 None:intergenic 40.0%
TGTCTTGTGTTGTATGCTAG+GGG + chr1_3:22129468-22129487 Msa0109950:intron 40.0%
!!! GGTTTCGGTTTGGGTTTTTT+CGG - chr1_3:22129502-22129521 None:intergenic 40.0%
!!! GATTTTTTGCGGTTTCGGTT+TGG - chr1_3:22129512-22129531 None:intergenic 40.0%
!! TCTTAAGTTGCGGTTTGGTT+TGG - chr1_3:22129610-22129629 None:intergenic 40.0%
TTGCCATGTTGCATTCAGTA+GGG - chr1_3:22130136-22130155 None:intergenic 40.0%
TTTGCCATGTTGCATTCAGT+AGG - chr1_3:22130137-22130156 None:intergenic 40.0%
TGTATGCAGATTCCTCAACA+AGG + chr1_3:22130415-22130434 Msa0109950:intron 40.0%
TCTCCTCTACATGTGTAACT+GGG - chr1_3:22130484-22130503 None:intergenic 40.0%
CAAGGAACAACACTTGATAG+AGG + chr1_3:22130593-22130612 Msa0109950:CDS 40.0%
! ACAACACTTGATAGAGGCAT+CGG + chr1_3:22130599-22130618 Msa0109950:CDS 40.0%
!! AATGTACCTAAACTTGCTGG+TGG - chr1_3:22130638-22130657 None:intergenic 40.0%
!! AGATGGACTAAAAACCCTAG+AGG + chr1_3:22130722-22130741 Msa0109950:CDS 40.0%
GAAGGAGAGTAATTCCTCTA+GGG - chr1_3:22130739-22130758 None:intergenic 40.0%
TGAAGGAGAGTAATTCCTCT+AGG - chr1_3:22130740-22130759 None:intergenic 40.0%
GAGGAATTACTCTCCTTCAA+AGG + chr1_3:22130741-22130760 Msa0109950:CDS 40.0%
CTTAGTGTAGCCAAAGAACA+TGG + chr1_3:22130830-22130849 Msa0109950:CDS 40.0%
CATGGAGTAGTTGAAAATGG+AGG + chr1_3:22130848-22130867 Msa0109950:CDS 40.0%
! TCCAGAAAGCATGAAAAGCT+TGG + chr1_3:22130976-22130995 Msa0109950:CDS 40.0%
! CCAGAAAGCATGAAAAGCTT+GGG + chr1_3:22130977-22130996 Msa0109950:CDS 40.0%
!! TCAATGACTAGCTTAGGCAT+TGG + chr1_3:22131010-22131029 Msa0109950:CDS 40.0%
AACAGTTTCACACATCACTG+AGG + chr1_3:22131060-22131079 Msa0109950:CDS 40.0%
AGTGCTTGCAGAAGAATTGA+AGG + chr1_3:22131240-22131259 Msa0109950:CDS 40.0%
ACTAATCTCTTGGAGTCACT+TGG - chr1_3:22131288-22131307 None:intergenic 40.0%
GGAACAAGCTTTCCAACAAC+CGG - chr1_3:22125435-22125454 None:intergenic 45.0%
GATGAGAGAGCAAGAGGAAA+TGG - chr1_3:22125473-22125492 None:intergenic 45.0%
AGCATAGATGAGAGAGCAAG+AGG - chr1_3:22125479-22125498 None:intergenic 45.0%
AAGGAGGTAAGAATGGCTTG+TGG + chr1_3:22125676-22125695 Msa0109950:intron 45.0%
GGTAGGTCATGTAGTAGCTT+AGG + chr1_3:22126689-22126708 Msa0109950:intron 45.0%
!! AAAGGAGTACCCACTGGATA+TGG + chr1_3:22126919-22126938 Msa0109950:intron 45.0%
TGTGAGATCCTAGGGTTTGA+CGG - chr1_3:22127198-22127217 None:intergenic 45.0%
TGGTTAGATACCCATTGGGA+TGG + chr1_3:22127415-22127434 Msa0109950:intron 45.0%
ATACCCATTGGGATGGTCTA+AGG + chr1_3:22127422-22127441 Msa0109950:intron 45.0%
TACCCATTGGGATGGTCTAA+GGG + chr1_3:22127423-22127442 Msa0109950:intron 45.0%
ACCAATGTCACCAATTGGGT+TGG + chr1_3:22128083-22128102 Msa0109950:CDS 45.0%
! ACCAACCCAATTGGTGACAT+TGG - chr1_3:22128087-22128106 None:intergenic 45.0%
CCAAATGGTACCAACCCAAT+TGG - chr1_3:22128096-22128115 None:intergenic 45.0%
!! CCAATTGGGTTGGTACCATT+TGG + chr1_3:22128093-22128112 Msa0109950:CDS 45.0%
! CATGACACTCAGGTGGTTTT+AGG - chr1_3:22128697-22128716 None:intergenic 45.0%
ACCACCTGAGTGTCATGAAA+TGG + chr1_3:22128700-22128719 Msa0109950:CDS 45.0%
TCCATTTCATGACACTCAGG+TGG - chr1_3:22128704-22128723 None:intergenic 45.0%
TACACTCTAGCAGTAGGAAC+AGG + chr1_3:22128782-22128801 Msa0109950:CDS 45.0%
! GCACCAATGGTGGAAATGTT+AGG - chr1_3:22128818-22128837 None:intergenic 45.0%
!! GATAATGTGGGTTGGACTCT+TGG + chr1_3:22128959-22128978 Msa0109950:CDS 45.0%
GGTTATGCACTTCCAACTCT+TGG + chr1_3:22128980-22128999 Msa0109950:CDS 45.0%
AGGGAGTCCCTTCACTAAAA+TGG + chr1_3:22129066-22129085 Msa0109950:CDS 45.0%
TTGATTCCACTCCCACATTG+AGG + chr1_3:22129200-22129219 Msa0109950:CDS 45.0%
CTTATACCTCAATGTGGGAG+TGG - chr1_3:22129209-22129228 None:intergenic 45.0%
TACTAGAGTCCTCTTTCCCT+AGG + chr1_3:22129405-22129424 Msa0109950:intron 45.0%
AGTCCTCTTTCCCTAGGAAT+TGG + chr1_3:22129411-22129430 Msa0109950:intron 45.0%
!! AAGTTGCGGTTTGGTTTGGT+TGG - chr1_3:22129606-22129625 None:intergenic 45.0%
!! GCAACTTGGATTGGTTCGTA+TGG - chr1_3:22129998-22130017 None:intergenic 45.0%
ACACCCTACTGAATGCAACA+TGG + chr1_3:22130130-22130149 Msa0109950:intron 45.0%
CATAATATATGCAGGGTCCG+AGG - chr1_3:22130287-22130306 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr1_3:22130316-22130335 None:intergenic 45.0%
! TCTTGACACATGCCTTGTTG+AGG - chr1_3:22130430-22130449 None:intergenic 45.0%
ATGCCCAGTTACACATGTAG+AGG + chr1_3:22130478-22130497 Msa0109950:CDS 45.0%
GTCTCCTCTACATGTGTAAC+TGG - chr1_3:22130485-22130504 None:intergenic 45.0%
!! CAACACTTGATAGAGGCATC+GGG + chr1_3:22130600-22130619 Msa0109950:CDS 45.0%
TTCCTATGCCCATCCTTTGA+AGG - chr1_3:22130757-22130776 None:intergenic 45.0%
! CCCAAGCTTTTCATGCTTTC+TGG - chr1_3:22130980-22130999 None:intergenic 45.0%
TCACACATCACTGAGGAACA+TGG + chr1_3:22131067-22131086 Msa0109950:CDS 45.0%
ACTGAGGAACATGGTCACAA+AGG + chr1_3:22131076-22131095 Msa0109950:CDS 45.0%
CTGAGGAACATGGTCACAAA+GGG + chr1_3:22131077-22131096 Msa0109950:CDS 45.0%
!!! TTAACAATTTTAATAAAAAA+AGG - chr1_3:22125644-22125663 None:intergenic 5.0%
!!! ATTATTGTTTTATTTTTTTA+AGG + chr1_3:22126857-22126876 Msa0109950:intron 5.0%
!!! TTATTGTTTTATTTTTTTAA+GGG + chr1_3:22126858-22126877 Msa0109950:intron 5.0%
!!! TTTTTTTTTTTTTTAAAGAT+AGG - chr1_3:22127168-22127187 None:intergenic 5.0%
!! TTAATTAAGTAAAAATATAT+AGG + chr1_3:22128238-22128257 Msa0109950:intron 5.0%
ATGGAAGAGGGAAGGGTAGT+GGG + chr1_3:22125350-22125369 Msa0109950:CDS 50.0%
GTGGGTGAGTTCACACAAGA+TGG + chr1_3:22125368-22125387 Msa0109950:CDS 50.0%
AACCACAACGGACCTAGCAA+TGG + chr1_3:22125776-22125795 Msa0109950:intron 50.0%
! AACTGTGGCTTGCCATTGCT+AGG - chr1_3:22125791-22125810 None:intergenic 50.0%
ACCCATTGGGATGGTCTAAG+GGG + chr1_3:22127424-22127443 Msa0109950:intron 50.0%
ACCCCTTAGACCATCCCAAT+GGG - chr1_3:22127428-22127447 None:intergenic 50.0%
TATGTTGCTGACGCCTACCT+TGG + chr1_3:22128137-22128156 Msa0109950:CDS 50.0%
CAAAGGTCCAATAACGGCCA+AGG - chr1_3:22128157-22128176 None:intergenic 50.0%
AGACATGCCCTGCCAATTTG+AGG - chr1_3:22128645-22128664 None:intergenic 50.0%
!!! CACTCAGGTGGTTTTAGGCT+TGG - chr1_3:22128692-22128711 None:intergenic 50.0%
GCACTCTACACTCTAGCAGT+AGG + chr1_3:22128776-22128795 Msa0109950:CDS 50.0%
ACTCTAGCAGTAGGAACAGG+TGG + chr1_3:22128785-22128804 Msa0109950:CDS 50.0%
TTAGTGAAGGGACTCCCTGT+AGG - chr1_3:22129064-22129083 None:intergenic 50.0%
CCTCCAATTCCTAGGGAAAG+AGG - chr1_3:22129417-22129436 None:intergenic 50.0%
CCTCTTTCCCTAGGAATTGG+AGG + chr1_3:22129414-22129433 Msa0109950:intron 50.0%
!! TTGGATTGGTTCGTATGGCG+CGG - chr1_3:22129993-22130012 None:intergenic 50.0%
! TGCATTCAGTAGGGTGTTCG+CGG - chr1_3:22130127-22130146 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr1_3:22130317-22130336 None:intergenic 50.0%
CTCCTTCAAAGGATGGGCAT+AGG + chr1_3:22130752-22130771 Msa0109950:CDS 50.0%
AGGAACATGGTCACAAAGGG+TGG + chr1_3:22131080-22131099 Msa0109950:CDS 50.0%
CATGGAAGAGGGAAGGGTAG+TGG + chr1_3:22125349-22125368 Msa0109950:exon 55.0%
TGCCATTGCTAGGTCCGTTG+TGG - chr1_3:22125781-22125800 None:intergenic 55.0%
CACCCCTTAGACCATCCCAA+TGG - chr1_3:22127429-22127448 None:intergenic 55.0%
ACGCCTACCTTGGCCGTTAT+TGG + chr1_3:22128147-22128166 Msa0109950:CDS 55.0%
GGTCCAATAACGGCCAAGGT+AGG - chr1_3:22128153-22128172 None:intergenic 55.0%
GGTGGTCGAGGTTTGAACCT+CGG + chr1_3:22130267-22130286 Msa0109950:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_3:22130321-22130340 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_3:22130318-22130337 Msa0109950:intron 55.0%
CTGAGCTAAGCTCACGAGGA+CGG + chr1_3:22130322-22130341 Msa0109950:intron 55.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG - chr1_3:22130112-22130131 None:intergenic 60.0%
! TCAGTAGGGTGTTCGCGGTG+CGG - chr1_3:22130122-22130141 None:intergenic 60.0%
! AGGGTGTTCGCGGTGCGGTT+TGG - chr1_3:22130117-22130136 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 22125286 22131537 22125286 ID=Msa0109950;Name=Msa0109950
chr1_3 mRNA 22125286 22131537 22125286 ID=Msa0109950-mRNA-1;Parent=Msa0109950;Name=Msa0109950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=64|1|1|1|1|1|4|231|593
chr1_3 exon 22125286 22125464 22125286 ID=Msa0109950-mRNA-1:exon:7915;Parent=Msa0109950-mRNA-1
chr1_3 exon 22127985 22128202 22127985 ID=Msa0109950-mRNA-1:exon:7916;Parent=Msa0109950-mRNA-1
chr1_3 exon 22128656 22129221 22128656 ID=Msa0109950-mRNA-1:exon:7917;Parent=Msa0109950-mRNA-1
chr1_3 exon 22130424 22131537 22130424 ID=Msa0109950-mRNA-1:exon:7918;Parent=Msa0109950-mRNA-1
chr1_3 five_prime_UTR 22125286 22125349 22125286 ID=Msa0109950-mRNA-1:five_prime_utr;Parent=Msa0109950-mRNA-1
chr1_3 CDS 22125350 22125464 22125350 ID=Msa0109950-mRNA-1:cds;Parent=Msa0109950-mRNA-1
chr1_3 CDS 22127985 22128202 22127985 ID=Msa0109950-mRNA-1:cds;Parent=Msa0109950-mRNA-1
chr1_3 CDS 22128656 22129221 22128656 ID=Msa0109950-mRNA-1:cds;Parent=Msa0109950-mRNA-1
chr1_3 CDS 22130424 22131306 22130424 ID=Msa0109950-mRNA-1:cds;Parent=Msa0109950-mRNA-1
chr1_3 three_prime_UTR 22131307 22131537 22131307 ID=Msa0109950-mRNA-1:three_prime_utr;Parent=Msa0109950-mRNA-1
Gene Sequence

>Msa0109950

ATGGAAGAGGGAAGGGTAGTGGGTGAGTTCACACAAGATGGAACAGTTGATCTTAAAGGGAAACCTATTCTCAAATCGAAAACCGGTTGTTGGAAAGCTTGTTCCTTCTTTGTTGTGTATGAGGTATTTGAGAGAATGGCTTATTATGGGATATCATCAAATTTGATATTATATTTAATAAAGAAGCTTCATCAAGGTACTGTGACTTCTTCTACCAATGTCACCAATTGGGTTGGTACCATTTGGATCACTCCAATATTAGGTGCTTATGTTGCTGACGCCTACCTTGGCCGTTATTGGACCTTTGTTACTGCTTCCTTTATCTACCTATTGGGCATGTCTATGCTCACATTATCAGTTTCTCTTCCAAGCCTAAAACCACCTGAGTGTCATGAAATGGATGTTACGAAATGCAAGGAAGCTTCTACATTACAGCTAGTAGTGTTCTATGGTGCACTCTACACTCTAGCAGTAGGAACAGGTGGAACTAAGCCTAACATTTCCACCATTGGTGCTGATCAATTTGATGAGTTTGACACAAAAGAGAAGAAACATAAACTCTCATTCTTCAATTGGTGGATGTTCAGCATCTTTATTGGGACCCTTTTTGCAAATTCTGTTTTAGTCTATATACAAGATAATGTGGGTTGGACTCTTGGTTATGCACTTCCAACTCTTGGACTTGCAATATCTATCATAATATTTTTGGCAGGCACACCATTCTATAGACATAAAGTACCTACAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATTGTGGCTGCTATGAAGAAATGGAATGTGCCTATTCCTAGTGACCCTAAAGAACTATATGAACTTGATTTGGAAGAGTATGCAAAGAAAGGAAGTGTTAGAATTGATTCCACTCCCACATTGAGATTCCTCAACAAGGCATGTGTCAAGACTAATTCAAGTACTAGTGGAGGTGTGTTATGCCCAGTTACACATGTAGAGGAGACCAAACAAATGATAAGAATGATCCCAATCATGGCTACTACATTAATTCCTAGTACAATGATTGCTCAAATAAATACACTATTTGTGAAGCAAGGAACAACACTTGATAGAGGCATCGGGAGTTTCAAAATTCCACCAGCAAGTTTAGGTACATTTGTGACAATATCAATGCTTATAAGTGTTGTGCTCTATGATCGTTTCTTTGTAAAGATTATGCAAAGATGGACTAAAAACCCTAGAGGAATTACTCTCCTTCAAAGGATGGGCATAGGAATCATAATTCATATAGTGATTATGGTAGTTGCAACTTTCACTGAAAGATATAGGCTTAGTGTAGCCAAAGAACATGGAGTAGTTGAAAATGGAGGATTAGTTCCATTGAGCATATTCATTTTACTCCCTCAATTTTTACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCTAAAATTGAGTTCTTCTATGATCAAGCTCCAGAAAGCATGAAAAGCTTGGGCACTTCTTATTCAATGACTAGCTTAGGCATTGGAAATTTTATTAGTACATTTCTTCTATCAACAGTTTCACACATCACTGAGGAACATGGTCACAAAGGGTGGATTTTGAATAACCTCAATGCTTCTCATCTTGATTACTACTATGCATTTTTGGCAATATTAAACATCTTGAACTTTATCTTCTTTTGTATTGTTACGAAGTATTATGTATATAGAGCTGAAATTTCAGATTCCATAAAAGTGCTTGCAGAAGAATTGAAGGAGAAGAAAAGTGTTGTGTCATACCAAGTGACTCCAAGAGATTAG
Protein sequence

>Msa0109950

MEEGRVVGEFTQDGTVDLKGKPILKSKTGCWKACSFFVVYEVFERMAYYGISSNLILYLIKKLHQGTVTSSTNVTNWVGTIWITPILGAYVADAYLGRYWTFVTASFIYLLGMSMLTLSVSLPSLKPPECHEMDVTKCKEASTLQLVVFYGALYTLAVGTGGTKPNISTIGADQFDEFDTKEKKHKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLAGTPFYRHKVPTGSPFTKMAKVIVAAMKKWNVPIPSDPKELYELDLEEYAKKGSVRIDSTPTLRFLNKACVKTNSSTSGGVLCPVTHVEETKQMIRMIPIMATTLIPSTMIAQINTLFVKQGTTLDRGIGSFKIPPASLGTFVTISMLISVVLYDRFFVKIMQRWTKNPRGITLLQRMGIGIIIHIVIMVVATFTERYRLSVAKEHGVVENGGLVPLSIFILLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFISTFLLSTVSHITEEHGHKGWILNNLNASHLDYYYAFLAILNILNFIFFCIVTKYYVYRAEISDSIKVLAEELKEKKSVVSYQVTPRD*