Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162350 | XP_013467775.1 | 97.651 | 596 | 14 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162350 | sp|Q8S4R4|CRTSO_SOLLC | 81.317 | 562 | 102 | 1 | 38 | 596 | 54 | 615 | 0.0 | 945 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162350 | A0A072VJ38 | 97.651 | 596 | 14 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060720 | Msa0162350 | 0.801338 | 9.437427e-49 | -8.615850e-47 |
| Msa0064310 | Msa0162350 | 0.800001 | 1.768256e-48 | -8.615850e-47 |
| Msa0069070 | Msa0162350 | 0.806504 | 7.967951e-50 | -8.615850e-47 |
| Msa0069230 | Msa0162350 | 0.800960 | 1.127551e-48 | -8.615850e-47 |
| Msa0070580 | Msa0162350 | 0.806509 | 7.945332e-50 | -8.615850e-47 |
| Msa0076590 | Msa0162350 | 0.811329 | 7.391660e-51 | -8.615850e-47 |
| Msa0076990 | Msa0162350 | 0.804341 | 2.263246e-49 | -8.615850e-47 |
| Msa0162170 | Msa0162350 | 0.805607 | 1.230489e-49 | -8.615850e-47 |
| Msa0162350 | Msa0273780 | 0.818961 | 1.491487e-52 | -8.615850e-47 |
| Msa0162350 | Msa0389890 | 0.803545 | 3.312615e-49 | -8.615850e-47 |
| Msa0162350 | Msa0428280 | 0.803266 | 3.783839e-49 | -8.615850e-47 |
| Msa0162350 | Msa0464730 | 0.814129 | 1.803245e-51 | -8.615850e-47 |
| Msa0162350 | Msa0558220 | 0.800485 | 1.409507e-48 | -8.615850e-47 |
| Msa0162350 | Msa0623350 | 0.823991 | 1.028010e-53 | -8.615850e-47 |
| Msa0162350 | Msa0681100 | 0.811940 | 5.443909e-51 | -8.615850e-47 |
| Msa0162350 | Msa0697610 | 0.810015 | 1.422245e-50 | -8.615850e-47 |
| Msa0162350 | Msa0828730 | 0.800279 | 1.552809e-48 | -8.615850e-47 |
| Msa0162350 | Msa0872800 | 0.823365 | 1.440363e-53 | -8.615850e-47 |
| Msa0162350 | Msa1148100 | 0.811264 | 7.638186e-51 | -8.615850e-47 |
| Msa0162350 | Msa1196910 | 0.804880 | 1.746587e-49 | -8.615850e-47 |
| Msa0162350 | Msa1249740 | 0.809716 | 1.649174e-50 | -8.615850e-47 |
| Msa0162350 | Msa1297490 | 0.800099 | 1.689349e-48 | -8.615850e-47 |
| Msa0162350 | Msa1410360 | 0.807307 | 5.388794e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162350 | MtrunA17_Chr1g0176461 | 97.651 | 596 | 14 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1199 |
| Msa0162350 | MtrunA17_Chr0c12g0493641 | 31.779 | 579 | 325 | 22 | 42 | 584 | 38 | 582 | 1.50e-64 | 222 |
| Msa0162350 | MtrunA17_Chr4g0077041 | 36.667 | 210 | 122 | 8 | 354 | 557 | 26 | 230 | 8.02e-34 | 129 |
| Msa0162350 | MtrunA17_Chr1g0162681 | 23.006 | 539 | 339 | 19 | 79 | 555 | 23 | 547 | 5.57e-13 | 71.6 |
| Msa0162350 | MtrunA17_Chr8g0373291 | 23.750 | 560 | 344 | 19 | 79 | 572 | 22 | 564 | 1.21e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162350 | AT1G06820.1 | 86.719 | 512 | 67 | 1 | 70 | 580 | 68 | 579 | 0.0 | 921 |
| Msa0162350 | AT1G06820.3 | 85.493 | 517 | 72 | 2 | 70 | 585 | 68 | 582 | 0.0 | 913 |
| Msa0162350 | AT1G06820.4 | 86.878 | 442 | 58 | 0 | 139 | 580 | 19 | 460 | 0.0 | 810 |
| Msa0162350 | AT1G06820.2 | 85.880 | 432 | 60 | 1 | 70 | 500 | 68 | 499 | 0.0 | 766 |
| Msa0162350 | AT1G57770.1 | 31.054 | 541 | 319 | 21 | 80 | 586 | 54 | 574 | 1.59e-59 | 208 |
| Msa0162350 | AT5G49555.1 | 23.268 | 563 | 340 | 20 | 79 | 572 | 14 | 553 | 7.16e-16 | 81.3 |
Find 177 sgRNAs with CRISPR-Local
Find 438 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTGGTGGGTTGGTTGC+TGG | 0.163402 | 1_4:-39030749 | Msa0162350:CDS |
| TCTGGTAGCATTTGATATTA+TGG | 0.166724 | 1_4:+39027479 | None:intergenic |
| CTGCTTCTTTGCCTCATATT+TGG | 0.171680 | 1_4:+39026766 | None:intergenic |
| AGTGGGAAGAGAGGGGATTT+TGG | 0.203079 | 1_4:-39030803 | Msa0162350:CDS |
| ATTTCAGCTCCAACGAATTC+AGG | 0.213778 | 1_4:+39029409 | None:intergenic |
| AACTGCATAGAATCCGATTT+TGG | 0.215825 | 1_4:-39025417 | Msa0162350:three_prime_UTR |
| GTTATACCTGGTGGGAGTTC+TGG | 0.230676 | 1_4:-39030677 | Msa0162350:CDS |
| GATGCAATTGTTATTGGTTC+TGG | 0.233123 | 1_4:-39030770 | Msa0162350:CDS |
| TGGAAGTTCTCTTCCTCTTT+TGG | 0.245609 | 1_4:+39027298 | None:intergenic |
| AGCATTTGATATTATGGTTT+TGG | 0.254832 | 1_4:+39027485 | None:intergenic |
| AATTGAGCATGGTTGGTTAA+TGG | 0.268735 | 1_4:+39031020 | None:intergenic |
| TTCTTGTATAACTCTTTGTT+TGG | 0.296135 | 1_4:+39025335 | None:intergenic |
| GTGGGATTAACTACCCTCTT+GGG | 0.310382 | 1_4:-39027738 | Msa0162350:CDS |
| GGGTTTGATGCAATTGTTAT+TGG | 0.311684 | 1_4:-39030776 | Msa0162350:CDS |
| GGCATGCTGCTTGGGTTGCT+TGG | 0.312524 | 1_4:-39025732 | Msa0162350:CDS |
| TATATTCACAACTTCTTCAA+TGG | 0.321714 | 1_4:-39026984 | Msa0162350:CDS |
| GGTTAGAAACGGAGAGTATA+AGG | 0.324411 | 1_4:+39030996 | None:intergenic |
| TGGTTCTGGGATTGGTGGGT+TGG | 0.329510 | 1_4:-39030756 | Msa0162350:CDS |
| GGATTGGTGGGTTGGTTGCT+GGG | 0.332135 | 1_4:-39030748 | Msa0162350:CDS |
| CTTGTAGGAAAGCTTGTAAA+AGG | 0.347722 | 1_4:-39027331 | Msa0162350:intron |
| GCCCGTGACGAGGGTACTTA+TGG | 0.350068 | 1_4:-39026407 | Msa0162350:CDS |
| CTGAGAGGTGGTTTGGTAGA+TGG | 0.352687 | 1_4:+39029645 | None:intergenic |
| CAAATGGTGGTAGAAGAAAA+AGG | 0.352783 | 1_4:-39030877 | Msa0162350:CDS |
| TGTGAAAGGTGCTAGAGTTT+TGG | 0.359350 | 1_4:-39030714 | Msa0162350:CDS |
| GTGGATCCTGAATATACTTC+CGG | 0.362723 | 1_4:+39028547 | None:intergenic |
| CTAGAACAATTGGACCAGTT+TGG | 0.364549 | 1_4:-39027089 | Msa0162350:intron |
| TGCTGCTTGGGTTGCTTGGT+TGG | 0.365552 | 1_4:-39025728 | Msa0162350:CDS |
| CATCGAGTAGCTGCAGATAT+TGG | 0.371399 | 1_4:-39026133 | Msa0162350:intron |
| GGCAAAAGGTCTAGTTGATC+AGG | 0.375101 | 1_4:-39027689 | Msa0162350:CDS |
| AAACTTACTGTTGTGTTAAA+CGG | 0.378010 | 1_4:+39026344 | None:intergenic |
| GGGTGTGATGGTAGATGATG+GGG | 0.379033 | 1_4:+39030969 | None:intergenic |
| GTTATTGCTGTAGCTTTCTC+AGG | 0.379480 | 1_4:-39026169 | Msa0162350:CDS |
| GTTGGTTCTTCTGTTATGTT+TGG | 0.379751 | 1_4:-39030623 | Msa0162350:CDS |
| ATGCAATTGTTATTGGTTCT+GGG | 0.385977 | 1_4:-39030769 | Msa0162350:CDS |
| AAGTATCGTCGATGTGTCTT+AGG | 0.386513 | 1_4:+39026431 | None:intergenic |
| AGCATTCCAAAGGGGTTGTT+AGG | 0.391726 | 1_4:-39026371 | Msa0162350:CDS |
| GGTAAAGATTGAAACTTTGT+AGG | 0.393664 | 1_4:+39030944 | None:intergenic |
| TTAGAGAAGAAATTGTTTCC+AGG | 0.395116 | 1_4:-39026716 | Msa0162350:CDS |
| TGAAGGATATGACGACCTTC+AGG | 0.399654 | 1_4:+39027007 | None:intergenic |
| TTACTCATAAAATTGATTCC+TGG | 0.402807 | 1_4:+39031122 | None:intergenic |
| ATTGTTATTGGTTCTGGGAT+TGG | 0.405554 | 1_4:-39030764 | Msa0162350:CDS |
| GCTGCTCCGTCGCAATTTGA+TGG | 0.407645 | 1_4:-39025478 | Msa0162350:three_prime_UTR |
| GTTGGAGACAGTTGCTTCCC+TGG | 0.408956 | 1_4:-39026199 | Msa0162350:CDS |
| TTGTACTTATCTAGAACAAT+TGG | 0.409988 | 1_4:-39027099 | Msa0162350:intron |
| AGCATTCACCGTAGAATTTG+AGG | 0.410752 | 1_4:+39029549 | None:intergenic |
| GGCATTCCTAACAACCCCTT+TGG | 0.415481 | 1_4:+39026365 | None:intergenic |
| GTGGTTGAAAGTGGGAAGAG+AGG | 0.417093 | 1_4:-39030812 | Msa0162350:CDS |
| TCCATATGGTTCCTCCAAAC+TGG | 0.419387 | 1_4:+39027075 | None:intergenic |
| TATTATTTGCCTCAAAATGC+TGG | 0.423282 | 1_4:-39028579 | Msa0162350:CDS |
| TTTGGAATGCTGCGTGGCAT+TGG | 0.424414 | 1_4:+39026383 | None:intergenic |
| AAATGATGACAATCTGTATC+TGG | 0.425094 | 1_4:+39027208 | None:intergenic |
| TATGTTTGGTTTCAGTGATA+AGG | 0.426067 | 1_4:-39030609 | Msa0162350:intron |
| CCTCGTGAATGCTTGACATT+AGG | 0.427995 | 1_4:-39029342 | Msa0162350:intron |
| GCTACCAGATGGGACACATT+TGG | 0.431536 | 1_4:-39027465 | Msa0162350:intron |
| TTATTGGTTCTGGGATTGGT+GGG | 0.433967 | 1_4:-39030760 | Msa0162350:CDS |
| CAGCCCCTCACTCCCAAAAT+CGG | 0.436583 | 1_4:+39025404 | None:intergenic |
| TAATGCCATGAAAATGATAA+TGG | 0.437425 | 1_4:+39031087 | None:intergenic |
| TCATATGGGTCATGCTCAAA+TGG | 0.439206 | 1_4:-39030893 | Msa0162350:CDS |
| TGGATCCTGAATATACTTCC+GGG | 0.441071 | 1_4:+39028548 | None:intergenic |
| CATAGCCCGGAAGTATATTC+AGG | 0.441329 | 1_4:-39028553 | Msa0162350:CDS |
| AAATGAACGGTTGTCGGATC+AGG | 0.442725 | 1_4:+39029668 | None:intergenic |
| ACTTGCTTTCAGAGCATAGA+TGG | 0.443465 | 1_4:-39026232 | Msa0162350:intron |
| TGGTTGAAAGTGGGAAGAGA+GGG | 0.443857 | 1_4:-39030811 | Msa0162350:CDS |
| CTAACCAAATGTGTCCCATC+TGG | 0.445008 | 1_4:+39027461 | None:intergenic |
| GGGGTGTGATGGTAGATGAT+GGG | 0.445186 | 1_4:+39030968 | None:intergenic |
| GGTGGGATTAACTACCCTCT+TGG | 0.447475 | 1_4:-39027739 | Msa0162350:CDS |
| AGCAGCATGCCATCCAAAAC+AGG | 0.450495 | 1_4:+39025744 | None:intergenic |
| GAAAGTGATGATGTACTGTT+TGG | 0.456103 | 1_4:+39031193 | None:intergenic |
| TTCTTCAATGGACGATTGGC+AGG | 0.456294 | 1_4:-39026972 | Msa0162350:intron |
| ACCAGTTTGGAGGAACCATA+TGG | 0.456800 | 1_4:-39027076 | Msa0162350:CDS |
| GAGTTACTTTCCCCACGAAA+AGG | 0.467163 | 1_4:-39029579 | Msa0162350:CDS |
| AACCATGAAAATGAAGCAAT+CGG | 0.473947 | 1_4:+39031282 | None:intergenic |
| AAGATTGAAACTTTGTAGGT+GGG | 0.478712 | 1_4:+39030948 | None:intergenic |
| ACCATGCTAGCATTAATCAT+TGG | 0.478809 | 1_4:+39028292 | None:intergenic |
| CTGAATATACTTCCGGGCTA+TGG | 0.480567 | 1_4:+39028554 | None:intergenic |
| CATTGGAAGCAGTTGGTTGT+CGG | 0.481504 | 1_4:-39029703 | Msa0162350:CDS |
| TGGGATTAACTACCCTCTTG+GGG | 0.481634 | 1_4:-39027737 | Msa0162350:CDS |
| TAAATGATCTCTGTATCATC+AGG | 0.484044 | 1_4:-39025368 | Msa0162350:three_prime_UTR |
| CAATTTGATAACACAAGCAT+TGG | 0.488575 | 1_4:-39029720 | Msa0162350:CDS |
| TGGGGTGTGATGGTAGATGA+TGG | 0.491055 | 1_4:+39030967 | None:intergenic |
| AGCAGTTGGTTGTCGGATGC+AGG | 0.491593 | 1_4:-39029696 | Msa0162350:CDS |
| GTTATTGGTTCTGGGATTGG+TGG | 0.492595 | 1_4:-39030761 | Msa0162350:CDS |
| GCATGGTTGGTTAATGGAAG+TGG | 0.492990 | 1_4:+39031026 | None:intergenic |
| CACGAGTATTATCACCGAGC+AGG | 0.494330 | 1_4:-39027638 | Msa0162350:CDS |
| CTTTGTGACAGACACTTTGG+TGG | 0.495403 | 1_4:-39027757 | Msa0162350:CDS |
| CAACTTCTTCAATGGACGAT+TGG | 0.495431 | 1_4:-39026976 | Msa0162350:CDS |
| AAAATGCTGGAGCCATAGCC+CGG | 0.498070 | 1_4:-39028566 | Msa0162350:CDS |
| TTTGTGACAGACACTTTGGT+GGG | 0.498312 | 1_4:-39027756 | Msa0162350:CDS |
| TCAAATTCTACGGTGAATGC+TGG | 0.498661 | 1_4:-39029547 | Msa0162350:CDS |
| GTTCTTTGTGACAGACACTT+TGG | 0.499413 | 1_4:-39027760 | Msa0162350:CDS |
| ATGTGTATTGAAAGAAAAGA+TGG | 0.502132 | 1_4:+39027256 | None:intergenic |
| GGGACTCAGTTGGCTGTGAA+AGG | 0.502136 | 1_4:-39030728 | Msa0162350:CDS |
| TCGATGGATGCTCGAAGACC+TGG | 0.502515 | 1_4:+39026698 | None:intergenic |
| TCTTTACCTTCATGTAGCTA+TGG | 0.503305 | 1_4:-39030929 | Msa0162350:CDS |
| AGTTACACAGTTATAGAACT+AGG | 0.504277 | 1_4:-39025571 | Msa0162350:three_prime_UTR |
| TTTCAATGCCCTGAATTCGT+TGG | 0.504784 | 1_4:-39029418 | Msa0162350:CDS |
| ATTGCAAAGTCCTTGGCAAA+AGG | 0.507882 | 1_4:-39027703 | Msa0162350:CDS |
| AAAGATTGAAACTTTGTAGG+TGG | 0.509708 | 1_4:+39030947 | None:intergenic |
| AGGAGAATCACTACCAAAAG+AGG | 0.509808 | 1_4:-39027311 | Msa0162350:CDS |
| TTTCAGCTCCAACGAATTCA+GGG | 0.512472 | 1_4:+39029410 | None:intergenic |
| GTTAGAAACGGAGAGTATAA+GGG | 0.515019 | 1_4:+39030997 | None:intergenic |
| ATAAGGGAATTGAGCATGGT+TGG | 0.515630 | 1_4:+39031013 | None:intergenic |
| AGGGTGGTGGTGAAAGTGAA+AGG | 0.516101 | 1_4:-39030857 | Msa0162350:CDS |
| ACTCGAACTGAGAGGTGGTT+TGG | 0.517725 | 1_4:+39029638 | None:intergenic |
| GTTGGTTGCTGGGACTCAGT+TGG | 0.518251 | 1_4:-39030738 | Msa0162350:CDS |
| CTTTACCTCTATAAAATCGA+TGG | 0.518459 | 1_4:+39026682 | None:intergenic |
| CAAATATGAGGCAAAGAAGC+AGG | 0.519953 | 1_4:-39026765 | Msa0162350:CDS |
| AGATGGAAATGAACGGTTGT+CGG | 0.520217 | 1_4:+39029662 | None:intergenic |
| ACTTACGGCTTTGCCCTGCT+CGG | 0.522769 | 1_4:+39027624 | None:intergenic |
| GAACAATTGGACCAGTTTGG+AGG | 0.525975 | 1_4:-39027086 | Msa0162350:CDS |
| GCTTGGTTGGTTAAGAACAC+TGG | 0.526189 | 1_4:-39025715 | Msa0162350:CDS |
| ACTTTGTAGGTGGGGTGTGA+TGG | 0.526748 | 1_4:+39030957 | None:intergenic |
| ATGCCACGCAGCATTCCAAA+GGG | 0.532817 | 1_4:-39026380 | Msa0162350:CDS |
| ATAGATGGTCTTTACTGTGT+TGG | 0.534434 | 1_4:-39026217 | Msa0162350:CDS |
| GACAGTTGCTTCCCTGGACA+AGG | 0.535454 | 1_4:-39026193 | Msa0162350:CDS |
| CATGACCCATATGAAAATTG+AGG | 0.540631 | 1_4:+39030902 | None:intergenic |
| AAGAAGTTGTGAATATATGA+AGG | 0.541078 | 1_4:+39026990 | None:intergenic |
| ACAGCAATAACACCTTGTCC+AGG | 0.542134 | 1_4:+39026181 | None:intergenic |
| TTATTTGTCGTTGTTCCACC+AGG | 0.542519 | 1_4:-39031140 | Msa0162350:five_prime_UTR |
| TCTCTCAAGAACCAAATATG+AGG | 0.543119 | 1_4:-39026777 | Msa0162350:CDS |
| AATGAAATTGTCTGAAGAGA+GGG | 0.543378 | 1_4:-39031314 | Msa0162350:five_prime_UTR |
| GTCCATAAGTACCCTCGTCA+CGG | 0.543450 | 1_4:+39026405 | None:intergenic |
| TTGGAGAAGTATGTTATACC+TGG | 0.544910 | 1_4:-39030689 | Msa0162350:CDS |
| TCGCAATTTGATGGACAAGA+TGG | 0.544923 | 1_4:-39025469 | Msa0162350:three_prime_UTR |
| TAAAATGCATAGTTACAGAA+AGG | 0.553807 | 1_4:+39025309 | None:intergenic |
| TCCAATGATTAATGCTAGCA+TGG | 0.556512 | 1_4:-39028293 | Msa0162350:intron |
| TAATATCAAATGCTACCAGA+TGG | 0.556998 | 1_4:-39027476 | Msa0162350:CDS |
| AGATTGAAACTTTGTAGGTG+GGG | 0.558184 | 1_4:+39030949 | None:intergenic |
| CTCATAAAATTGATTCCTGG+TGG | 0.558779 | 1_4:+39031125 | None:intergenic |
| GACGGCATCCTCAAATTCTA+CGG | 0.562130 | 1_4:-39029557 | Msa0162350:CDS |
| ACACAAGCATTGGAAGCAGT+TGG | 0.564007 | 1_4:-39029710 | Msa0162350:CDS |
| GATGAAGAAGTGGTTGAAAG+TGG | 0.574995 | 1_4:-39030821 | Msa0162350:CDS |
| TGGTGGGATTGCAAAGTCCT+TGG | 0.575419 | 1_4:-39027710 | Msa0162350:CDS |
| GGTTGAAAGTGGGAAGAGAG+GGG | 0.577058 | 1_4:-39030810 | Msa0162350:CDS |
| TCCATAAGTACCCTCGTCAC+GGG | 0.581708 | 1_4:+39026406 | None:intergenic |
| AGTGAAAGGGATGATGAAAG+TGG | 0.581837 | 1_4:-39030843 | Msa0162350:CDS |
| GGGTGGTGGTGAAAGTGAAA+GGG | 0.585589 | 1_4:-39030856 | Msa0162350:CDS |
| GTTACACAGTTATAGAACTA+GGG | 0.586877 | 1_4:-39025570 | Msa0162350:three_prime_UTR |
| AGATTATAAAGTTGTCAGAT+CGG | 0.588867 | 1_4:+39025544 | None:intergenic |
| AATGATGAATCAAGTATAGT+CGG | 0.590388 | 1_4:+39027034 | None:intergenic |
| AATATCAAATGCTACCAGAT+GGG | 0.590576 | 1_4:-39027475 | Msa0162350:CDS |
| GTTGTCTTTCATAGATGCTG+AGG | 0.591209 | 1_4:-39028520 | Msa0162350:intron |
| AATGCCACGCAGCATTCCAA+AGG | 0.592149 | 1_4:-39026381 | Msa0162350:CDS |
| GATTCATCATTAGCTCCTGA+AGG | 0.593456 | 1_4:-39027022 | Msa0162350:CDS |
| TACTTTCCCCACGAAAAGGA+CGG | 0.594585 | 1_4:-39029575 | Msa0162350:CDS |
| ACGAGTATTATCACCGAGCA+GGG | 0.595181 | 1_4:-39027637 | Msa0162350:CDS |
| GATGAAAGTGGATGAAGAAG+TGG | 0.597887 | 1_4:-39030831 | Msa0162350:CDS |
| TAAAAGCCAGAACTCCCACC+AGG | 0.605161 | 1_4:+39030671 | None:intergenic |
| GGTCTTCCATAGCTACATGA+AGG | 0.607346 | 1_4:+39030923 | None:intergenic |
| ATTCTACGGTGAATGCTGGA+AGG | 0.608327 | 1_4:-39029543 | Msa0162350:intron |
| GTTGGAGCTGAAATCGCTTG+AGG | 0.608624 | 1_4:-39029400 | Msa0162350:CDS |
| TAATGAAATTGTCTGAAGAG+AGG | 0.610111 | 1_4:-39031315 | None:intergenic |
| GGTGTGATGGTAGATGATGG+GGG | 0.615243 | 1_4:+39030970 | None:intergenic |
| GGGATTAACTACCCTCTTGG+GGG | 0.619406 | 1_4:-39027736 | Msa0162350:CDS |
| ATGAAATTGTCTGAAGAGAG+GGG | 0.620511 | 1_4:-39031313 | Msa0162350:five_prime_UTR |
| AGAAGTATGTTATACCTGGT+GGG | 0.622034 | 1_4:-39030685 | Msa0162350:CDS |
| GGGTAGTCAGATACTTTACA+AGG | 0.622656 | 1_4:-39027668 | Msa0162350:CDS |
| GCAAAAGGTCTAGTTGATCA+GGG | 0.623548 | 1_4:-39027688 | Msa0162350:CDS |
| GAGAAGTATGTTATACCTGG+TGG | 0.625923 | 1_4:-39030686 | Msa0162350:CDS |
| CAGCAATAACACCTTGTCCA+GGG | 0.633374 | 1_4:+39026182 | None:intergenic |
| GTAGGAGTGAGGCTTTCAGA+CGG | 0.637138 | 1_4:-39027522 | Msa0162350:CDS |
| GAGTATAAGGGAATTGAGCA+TGG | 0.637900 | 1_4:+39031009 | None:intergenic |
| ATGAAGAAGTGGTTGAAAGT+GGG | 0.641554 | 1_4:-39030820 | Msa0162350:CDS |
| TGTGCACTCGAACTGAGAGG+TGG | 0.648501 | 1_4:+39029633 | None:intergenic |
| TCTTGTCCATCAAATTGCGA+CGG | 0.651278 | 1_4:+39025472 | None:intergenic |
| ACGATACTTAGCCCGTGACG+AGG | 0.654000 | 1_4:-39026417 | Msa0162350:CDS |
| CTCTGTGCACTCGAACTGAG+AGG | 0.658093 | 1_4:+39029630 | None:intergenic |
| CGATACTTAGCCCGTGACGA+GGG | 0.667190 | 1_4:-39026416 | Msa0162350:CDS |
| TATGGGTCATGCTCAAATGG+TGG | 0.673522 | 1_4:-39030890 | Msa0162350:CDS |
| AACCCCTTTGGAATGCTGCG+TGG | 0.680893 | 1_4:+39026377 | None:intergenic |
| CCTAATGTCAAGCATTCACG+AGG | 0.681771 | 1_4:+39029342 | None:intergenic |
| TCTATAACTGTGTAACTGTG+AGG | 0.689031 | 1_4:+39025577 | None:intergenic |
| TCTATGAAAGACAACAACTG+TGG | 0.692035 | 1_4:+39028528 | None:intergenic |
| GTTTGGTAGATGGAAATGAA+CGG | 0.693676 | 1_4:+39029655 | None:intergenic |
| ATATGAGGCAAAGAAGCAGG+TGG | 0.702829 | 1_4:-39026762 | Msa0162350:CDS |
| TGATGACAATCTGTATCTGG+TGG | 0.706460 | 1_4:+39027211 | None:intergenic |
| TGCCACGCAGCATTCCAAAG+GGG | 0.750458 | 1_4:-39026379 | Msa0162350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATTTTTAA+TGG | + | chr1_4:39025425-39025444 | None:intergenic | 0.0% |
| !!! | ATTTTTTATTATTAAAAATT+AGG | - | chr1_4:39030810-39030829 | Msa0162350:CDS | 0.0% |
| !!! | TTTTTTATTATTAAAAATTA+GGG | - | chr1_4:39030811-39030830 | Msa0162350:CDS | 0.0% |
| !! | AAAAAAATGAATTAAAAAAG+CGG | + | chr1_4:39027125-39027144 | None:intergenic | 10.0% |
| !!! | ATTGTATTTTTATTTTTTGT+TGG | - | chr1_4:39030972-39030991 | Msa0162350:CDS | 10.0% |
| !!! | TTGTATTTTTATTTTTTGTT+GGG | - | chr1_4:39030973-39030992 | Msa0162350:CDS | 10.0% |
| !!! | AAATGTATTTATCTTTTTCA+CGG | - | chr1_4:39026649-39026668 | Msa0162350:intron | 15.0% |
| !!! | ATTTGTTTATTTTGAATATG+AGG | - | chr1_4:39027288-39027307 | Msa0162350:CDS | 15.0% |
| !! | AAAAAAGATGTAACATAATT+AGG | - | chr1_4:39027766-39027785 | Msa0162350:intron | 15.0% |
| !! | TGAAAATATAACGTTAAAAT+AGG | + | chr1_4:39027947-39027966 | None:intergenic | 15.0% |
| !!! | TTTAACGTTATATTTTCATA+TGG | - | chr1_4:39027949-39027968 | Msa0162350:intron | 15.0% |
| !! | AATATTATGAAAAGATAATG+TGG | + | chr1_4:39028167-39028186 | None:intergenic | 15.0% |
| !!! | AGATTTCAACTTTATTTTAT+TGG | + | chr1_4:39029670-39029689 | None:intergenic | 15.0% |
| !!! | AAAAATATTTTAACAACGTA+CGG | + | chr1_4:39029980-39029999 | None:intergenic | 15.0% |
| !! | TAATATAATAAACAAAAGCA+CGG | + | chr1_4:39030698-39030717 | None:intergenic | 15.0% |
| !! | TTATTATTAAAAATTAGGGT+TGG | - | chr1_4:39030815-39030834 | Msa0162350:CDS | 15.0% |
| !!! | TGTATTTTTATTTTTTGTTG+GGG | - | chr1_4:39030974-39030993 | Msa0162350:CDS | 15.0% |
| !!! | CATGGTTTATTTTAGTATTT+TGG | - | chr1_4:39025327-39025346 | Msa0162350:three_prime_UTR | 20.0% |
| !!! | GTTTATTTTAGTATTTTGGT+GGG | - | chr1_4:39025331-39025350 | Msa0162350:three_prime_UTR | 20.0% |
| !!! | ACTGTTTTCATATAAGTTAT+AGG | + | chr1_4:39026419-39026438 | None:intergenic | 20.0% |
| !! | TCATTATTGTTTATGTTGAA+TGG | - | chr1_4:39026790-39026809 | Msa0162350:intron | 20.0% |
| !! | TTAAAAGTTTACATTTGTGA+TGG | - | chr1_4:39027146-39027165 | Msa0162350:intron | 20.0% |
| !! | TCAGAAAATTATTCACAAAT+TGG | + | chr1_4:39027337-39027356 | None:intergenic | 20.0% |
| !! | GATTGAAATATACATATTGA+AGG | + | chr1_4:39027422-39027441 | None:intergenic | 20.0% |
| !! | GATGTAATTGAAAATTTGAA+AGG | - | chr1_4:39027812-39027831 | Msa0162350:intron | 20.0% |
| !! | AATATAACGTTAAAATAGGA+GGG | + | chr1_4:39027943-39027962 | None:intergenic | 20.0% |
| !! | AAATATAACGTTAAAATAGG+AGG | + | chr1_4:39027944-39027963 | None:intergenic | 20.0% |
| !!! | ATAAGGTTTACCTATTTTTA+TGG | - | chr1_4:39028124-39028143 | Msa0162350:intron | 20.0% |
| !! | CAAAAGATCGTATATAATAA+TGG | + | chr1_4:39028592-39028611 | None:intergenic | 20.0% |
| !!! | CATTATTATATACGATCTTT+TGG | - | chr1_4:39028590-39028609 | Msa0162350:intron | 20.0% |
| !! | AATTAATCAAATAAAGAAGC+AGG | + | chr1_4:39028803-39028822 | None:intergenic | 20.0% |
| !!! | ATTCTATTTTGTAATCTGAT+AGG | + | chr1_4:39028997-39029016 | None:intergenic | 20.0% |
| !! | CTATATAGAATTATAAGTTG+AGG | + | chr1_4:39029435-39029454 | None:intergenic | 20.0% |
| !! | TATTGGCAAATGAATAAAAT+AGG | + | chr1_4:39029748-39029767 | None:intergenic | 20.0% |
| !! | ATTACAAATTATGTCTTCTA+GGG | + | chr1_4:39030026-39030045 | None:intergenic | 20.0% |
| !! | TATTACAAATTATGTCTTCT+AGG | + | chr1_4:39030027-39030046 | None:intergenic | 20.0% |
| !! | ACACATAAATAATCAAGATT+TGG | + | chr1_4:39030090-39030109 | None:intergenic | 20.0% |
| !!! | TCATTTAATATTTGCCTTTT+TGG | - | chr1_4:39030584-39030603 | Msa0162350:intron | 20.0% |
| !!! | AAAAGCAAATTTTGTAAAGA+TGG | - | chr1_4:39031084-39031103 | Msa0162350:five_prime_UTR | 20.0% |
| !!! | GGTTTATTTTAGTATTTTGG+TGG | - | chr1_4:39025330-39025349 | Msa0162350:three_prime_UTR | 25.0% |
| !! | TTACTCATAAAATTGATTCC+TGG | + | chr1_4:39025474-39025493 | None:intergenic | 25.0% |
| !! | GAATCAATTTTATGAGTAAG+TGG | - | chr1_4:39025475-39025494 | Msa0162350:three_prime_UTR | 25.0% |
| ! | TAATGCCATGAAAATGATAA+TGG | + | chr1_4:39025509-39025528 | None:intergenic | 25.0% |
| !! | TCTAAGATAGCTTATGAAAA+CGG | - | chr1_4:39026113-39026132 | Msa0162350:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_4:39026236-39026255 | Msa0162350:intron | 25.0% |
| !! | TTAACACTTGTGATTTTGTT+AGG | - | chr1_4:39026305-39026324 | Msa0162350:intron | 25.0% |
| !! | TAACACTTGTGATTTTGTTA+GGG | - | chr1_4:39026306-39026325 | Msa0162350:intron | 25.0% |
| ! | ATGTACCTTAAATTTGTGTA+GGG | - | chr1_4:39026844-39026863 | Msa0162350:intron | 25.0% |
| ! | AAAATGAATTAAAAAAGCGG+AGG | + | chr1_4:39027122-39027141 | None:intergenic | 25.0% |
| ! | TTATTCACAAATTGGAGTTT+AGG | + | chr1_4:39027329-39027348 | None:intergenic | 25.0% |
| ! | TTTGTGTCTCAGAATTTATA+TGG | - | chr1_4:39027518-39027537 | Msa0162350:CDS | 25.0% |
| ! | ATCAATGTGATTCTATACTT+GGG | + | chr1_4:39027620-39027639 | None:intergenic | 25.0% |
| ! | AATCAATGTGATTCTATACT+TGG | + | chr1_4:39027621-39027640 | None:intergenic | 25.0% |
| !!! | GAAAGTTGCTAGTTTTAAAT+TGG | - | chr1_4:39027657-39027676 | Msa0162350:CDS | 25.0% |
| !! | GTTTTATAAGTTTACCTTTC+AGG | - | chr1_4:39027695-39027714 | Msa0162350:CDS | 25.0% |
| !!! | ATGTTACATCTTTTTTTGCA+TGG | + | chr1_4:39027762-39027781 | None:intergenic | 25.0% |
| !! | TAACATAATTAGGAGTATGT+TGG | - | chr1_4:39027776-39027795 | Msa0162350:intron | 25.0% |
| ! | ATATAACGTTAAAATAGGAG+GGG | + | chr1_4:39027942-39027961 | None:intergenic | 25.0% |
| !! | CGTTATATTTTCATATGGTT+TGG | - | chr1_4:39027954-39027973 | Msa0162350:intron | 25.0% |
| ! | AGTTATTCAATTCAGTCATA+AGG | - | chr1_4:39028107-39028126 | Msa0162350:intron | 25.0% |
| ! | TCAACACTTTCCATAAAAAT+AGG | + | chr1_4:39028137-39028156 | None:intergenic | 25.0% |
| ! | TGAATGAAAATTACCAATCA+GGG | + | chr1_4:39028223-39028242 | None:intergenic | 25.0% |
| ! | ATGAATGAAAATTACCAATC+AGG | + | chr1_4:39028224-39028243 | None:intergenic | 25.0% |
| !! | AGATCGTATATAATAATGGA+AGG | + | chr1_4:39028588-39028607 | None:intergenic | 25.0% |
| !! | ATTTGATTAATTTTGTCTCC+AGG | - | chr1_4:39028811-39028830 | Msa0162350:intron | 25.0% |
| ! | ACAAAATAGAATGACATGTT+TGG | - | chr1_4:39029005-39029024 | Msa0162350:intron | 25.0% |
| !! | AGCATTTGATATTATGGTTT+TGG | + | chr1_4:39029111-39029130 | None:intergenic | 25.0% |
| ! | AAGGTAACATTATGTAATTC+GGG | + | chr1_4:39029245-39029264 | None:intergenic | 25.0% |
| ! | CAAGGTAACATTATGTAATT+CGG | + | chr1_4:39029246-39029265 | None:intergenic | 25.0% |
| ! | ATTACATAATGTTACCTTGT+AGG | - | chr1_4:39029247-39029266 | Msa0162350:intron | 25.0% |
| !!! | GAGCTTTAACATAAACTTTT+TGG | + | chr1_4:39029318-39029337 | None:intergenic | 25.0% |
| ! | ATGTGTATTGAAAGAAAAGA+TGG | + | chr1_4:39029340-39029359 | None:intergenic | 25.0% |
| !! | ATCTTTTCTTTCAATACACA+TGG | - | chr1_4:39029339-39029358 | Msa0162350:intron | 25.0% |
| !! | TCTTTTCTTTCAATACACAT+GGG | - | chr1_4:39029340-39029359 | Msa0162350:intron | 25.0% |
| !! | TTGTACTTATCTAGAACAAT+TGG | - | chr1_4:39029494-39029513 | Msa0162350:intron | 25.0% |
| ! | AATGATGAATCAAGTATAGT+CGG | + | chr1_4:39029562-39029581 | None:intergenic | 25.0% |
| ! | AAGAAGTTGTGAATATATGA+AGG | + | chr1_4:39029606-39029625 | None:intergenic | 25.0% |
| ! | TATATTCACAACTTCTTCAA+TGG | - | chr1_4:39029609-39029628 | Msa0162350:CDS | 25.0% |
| ! | ACTATGAGATTTACATGTAT+TGG | + | chr1_4:39029765-39029784 | None:intergenic | 25.0% |
| !!! | ATGTTCTTGTTTTCTGTTTT+AGG | - | chr1_4:39029792-39029811 | Msa0162350:intron | 25.0% |
| !!! | TGTTCTTGTTTTCTGTTTTA+GGG | - | chr1_4:39029793-39029812 | Msa0162350:intron | 25.0% |
| ! | AAAGTACAGTAAAAAGAATG+AGG | + | chr1_4:39029950-39029969 | None:intergenic | 25.0% |
| ! | AAACTTACTGTTGTGTTAAA+CGG | + | chr1_4:39030252-39030271 | None:intergenic | 25.0% |
| ! | AACTAAAAATACTGTTACAC+AGG | + | chr1_4:39030949-39030968 | None:intergenic | 25.0% |
| !!! | ATTTTTATTTTTTGTTGGGG+AGG | - | chr1_4:39030977-39030996 | Msa0162350:CDS | 25.0% |
| !!! | TTTTTATTTTTTGTTGGGGA+GGG | - | chr1_4:39030978-39030997 | Msa0162350:CDS | 25.0% |
| ! | AGATTATAAAGTTGTCAGAT+CGG | + | chr1_4:39031052-39031071 | None:intergenic | 25.0% |
| ! | TTCTTGTATAACTCTTTGTT+TGG | + | chr1_4:39031261-39031280 | None:intergenic | 25.0% |
| ! | TAAAATGCATAGTTACAGAA+AGG | + | chr1_4:39031287-39031306 | None:intergenic | 25.0% |
| AACCATGAAAATGAAGCAAT+CGG | + | chr1_4:39025314-39025333 | None:intergenic | 30.0% | |
| !!! | TATTTTAGTATTTTGGTGGG+TGG | - | chr1_4:39025334-39025353 | Msa0162350:three_prime_UTR | 30.0% |
| !!! | ATTTTAGTATTTTGGTGGGT+GGG | - | chr1_4:39025335-39025354 | Msa0162350:three_prime_UTR | 30.0% |
| ! | CTTCACCATTATCATTTTCA+TGG | - | chr1_4:39025501-39025520 | Msa0162350:three_prime_UTR | 30.0% |
| AAGATTGAAACTTTGTAGGT+GGG | + | chr1_4:39025648-39025667 | None:intergenic | 30.0% | |
| AAAGATTGAAACTTTGTAGG+TGG | + | chr1_4:39025649-39025668 | None:intergenic | 30.0% | |
| GGTAAAGATTGAAACTTTGT+AGG | + | chr1_4:39025652-39025671 | None:intergenic | 30.0% | |
| ! | GAAGACCTCAATTTTCATAT+GGG | - | chr1_4:39025686-39025705 | Msa0162350:three_prime_UTR | 30.0% |
| AAATGGTGGTAGAAGAAAAA+GGG | - | chr1_4:39025717-39025736 | Msa0162350:CDS | 30.0% | |
| !! | ATGCAATTGTTATTGGTTCT+GGG | - | chr1_4:39025824-39025843 | Msa0162350:intron | 30.0% |
| ! | TATGTTTGGTTTCAGTGATA+AGG | - | chr1_4:39025984-39026003 | Msa0162350:intron | 30.0% |
| AGAGTTCAATGTTATAGTGA+AGG | - | chr1_4:39026051-39026070 | Msa0162350:intron | 30.0% | |
| ! | TTTATCCAAACATGGCTTTA+AGG | - | chr1_4:39026244-39026263 | Msa0162350:intron | 30.0% |
| ATAAGCTAGAAAACAACTGA+TGG | + | chr1_4:39026361-39026380 | None:intergenic | 30.0% | |
| GCTTATATCTATAAGTTCTC+CGG | - | chr1_4:39026375-39026394 | Msa0162350:CDS | 30.0% | |
| CTTATATCTATAAGTTCTCC+GGG | - | chr1_4:39026376-39026395 | Msa0162350:CDS | 30.0% | |
| CGCTAATATCATAAGTACTT+AGG | + | chr1_4:39026462-39026481 | None:intergenic | 30.0% | |
| TATTGTGCTTATGCATTAGT+AGG | + | chr1_4:39026509-39026528 | None:intergenic | 30.0% | |
| TTGGTTTCTTAACTTCTCAT+AGG | + | chr1_4:39026617-39026636 | None:intergenic | 30.0% | |
| AGTTAAGAAACCAAGAACAA+AGG | - | chr1_4:39026623-39026642 | Msa0162350:intron | 30.0% | |
| ! | TACATTTTCACCTTTGTTCT+TGG | + | chr1_4:39026636-39026655 | None:intergenic | 30.0% |
| ! | CTACACAAATTTAAGGTACA+TGG | + | chr1_4:39026845-39026864 | None:intergenic | 30.0% |
| CATGTACCTTAAATTTGTGT+AGG | - | chr1_4:39026843-39026862 | Msa0162350:intron | 30.0% | |
| GATTACCCTACACAAATTTA+AGG | + | chr1_4:39026852-39026871 | None:intergenic | 30.0% | |
| ! | CAATTTGATAACACAAGCAT+TGG | - | chr1_4:39026873-39026892 | Msa0162350:intron | 30.0% |
| ! | ATTTTGAATATGAGGCTACA+AGG | - | chr1_4:39027296-39027315 | Msa0162350:CDS | 30.0% |
| TTACTGAACATCATTACTCT+TGG | - | chr1_4:39027489-39027508 | Msa0162350:CDS | 30.0% | |
| ! | GAATCACATTGATTGAATCA+CGG | - | chr1_4:39027627-39027646 | Msa0162350:intron | 30.0% |
| ! | AATCACATTGATTGAATCAC+GGG | - | chr1_4:39027628-39027647 | Msa0162350:intron | 30.0% |
| ! | TTGAAAGGAGTCTTATAGAA+AGG | - | chr1_4:39027827-39027846 | Msa0162350:intron | 30.0% |
| ! | TGAAAGGAGTCTTATAGAAA+GGG | - | chr1_4:39027828-39027847 | Msa0162350:intron | 30.0% |
| !!! | AGCATTTTGAGGCAAATAAT+AGG | + | chr1_4:39028015-39028034 | None:intergenic | 30.0% |
| TATTATTTGCCTCAAAATGC+TGG | - | chr1_4:39028014-39028033 | Msa0162350:intron | 30.0% | |
| GAATGAAAATTACCAATCAG+GGG | + | chr1_4:39028222-39028241 | None:intergenic | 30.0% | |
| TTTCATTCATAAAAGCTCTG+TGG | - | chr1_4:39028234-39028253 | Msa0162350:intron | 30.0% | |
| ATGAAAGAAAGCAAAAAGCT+AGG | + | chr1_4:39028337-39028356 | None:intergenic | 30.0% | |
| !! | TTGTACTTTTCAAAGTGTCT+AGG | - | chr1_4:39028374-39028393 | Msa0162350:intron | 30.0% |
| GACAAAAAAGATTACAGTGT+TGG | + | chr1_4:39028497-39028516 | None:intergenic | 30.0% | |
| ! | CGTATATAATAATGGAAGGA+TGG | + | chr1_4:39028584-39028603 | None:intergenic | 30.0% |
| !! | ACCAATTCTAAAGTGACATA+AGG | - | chr1_4:39028640-39028659 | Msa0162350:intron | 30.0% |
| !! | TCCTTATGTCACTTTAGAAT+TGG | + | chr1_4:39028644-39028663 | None:intergenic | 30.0% |
| ! | GATTTGTACTATACTTTTGC+AGG | - | chr1_4:39029049-39029068 | Msa0162350:intron | 30.0% |
| TCTGGTAGCATTTGATATTA+TGG | + | chr1_4:39029117-39029136 | None:intergenic | 30.0% | |
| TAATATCAAATGCTACCAGA+TGG | - | chr1_4:39029117-39029136 | Msa0162350:intron | 30.0% | |
| AATATCAAATGCTACCAGAT+GGG | - | chr1_4:39029118-39029137 | Msa0162350:intron | 30.0% | |
| CGGGATTAACAAATTAATGA+AGG | + | chr1_4:39029226-39029245 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTCAATACACATG+GGG | - | chr1_4:39029341-39029360 | Msa0162350:intron | 30.0% |
| ! | TTTTCTTTCAATACACATGG+GGG | - | chr1_4:39029342-39029361 | Msa0162350:intron | 30.0% |
| AAATGATGACAATCTGTATC+TGG | + | chr1_4:39029388-39029407 | None:intergenic | 30.0% | |
| TCATTCGTTCAAAGTTATCA+AGG | + | chr1_4:39029458-39029477 | None:intergenic | 30.0% | |
| CTCAAAAAGATACTTCCATA+TGG | + | chr1_4:39029535-39029554 | None:intergenic | 30.0% | |
| !! | TTTTATTGGTTACCACTACT+CGG | + | chr1_4:39029656-39029675 | None:intergenic | 30.0% |
| TGGCAAATGAATAAAATAGG+AGG | + | chr1_4:39029745-39029764 | None:intergenic | 30.0% | |
| TTAGAGAAGAAATTGTTTCC+AGG | - | chr1_4:39029877-39029896 | Msa0162350:intron | 30.0% | |
| CTTTACCTCTATAAAATCGA+TGG | + | chr1_4:39029914-39029933 | None:intergenic | 30.0% | |
| CGCTATAAATATGTCCAAAA+AGG | + | chr1_4:39030601-39030620 | None:intergenic | 30.0% | |
| ATCCAAATGAGTTTAAACGT+GGG | - | chr1_4:39030645-39030664 | Msa0162350:CDS | 30.0% | |
| AGTTACACAGTTATAGAACT+AGG | - | chr1_4:39031022-39031041 | Msa0162350:exon | 30.0% | |
| GTTACACAGTTATAGAACTA+GGG | - | chr1_4:39031023-39031042 | Msa0162350:exon | 30.0% | |
| TAAATGATCTCTGTATCATC+AGG | - | chr1_4:39031225-39031244 | Msa0162350:five_prime_UTR | 30.0% | |
| ! | TTCCGATTGCTTCATTTTCA+TGG | - | chr1_4:39025309-39025328 | Msa0162350:three_prime_UTR | 35.0% |
| !!! | TTTTAGTATTTTGGTGGGTG+GGG | - | chr1_4:39025336-39025355 | Msa0162350:three_prime_UTR | 35.0% |
| ! | GAAAGTGATGATGTACTGTT+TGG | + | chr1_4:39025403-39025422 | None:intergenic | 35.0% |
| ! | CTCATAAAATTGATTCCTGG+TGG | + | chr1_4:39025471-39025490 | None:intergenic | 35.0% |
| ! | AATTGAGCATGGTTGGTTAA+TGG | + | chr1_4:39025576-39025595 | None:intergenic | 35.0% |
| ! | GTTAGAAACGGAGAGTATAA+GGG | + | chr1_4:39025599-39025618 | None:intergenic | 35.0% |
| AGATTGAAACTTTGTAGGTG+GGG | + | chr1_4:39025647-39025666 | None:intergenic | 35.0% | |
| TCTTTACCTTCATGTAGCTA+TGG | - | chr1_4:39025664-39025683 | Msa0162350:three_prime_UTR | 35.0% | |
| ! | GGAAGACCTCAATTTTCATA+TGG | - | chr1_4:39025685-39025704 | Msa0162350:three_prime_UTR | 35.0% |
| CATGACCCATATGAAAATTG+AGG | + | chr1_4:39025694-39025713 | None:intergenic | 35.0% | |
| CAAATGGTGGTAGAAGAAAA+AGG | - | chr1_4:39025716-39025735 | Msa0162350:CDS | 35.0% | |
| ATGAAGAAGTGGTTGAAAGT+GGG | - | chr1_4:39025773-39025792 | Msa0162350:intron | 35.0% | |
| GGGTTTGATGCAATTGTTAT+TGG | - | chr1_4:39025817-39025836 | Msa0162350:intron | 35.0% | |
| !! | GATGCAATTGTTATTGGTTC+TGG | - | chr1_4:39025823-39025842 | Msa0162350:intron | 35.0% |
| !! | ATTGTTATTGGTTCTGGGAT+TGG | - | chr1_4:39025829-39025848 | Msa0162350:intron | 35.0% |
| ! | TTGGAGAAGTATGTTATACC+TGG | - | chr1_4:39025904-39025923 | Msa0162350:intron | 35.0% |
| ! | AGAAGTATGTTATACCTGGT+GGG | - | chr1_4:39025908-39025927 | Msa0162350:intron | 35.0% |
| !!! | GAGTTCTGGCTTTTATCATA+GGG | - | chr1_4:39025930-39025949 | Msa0162350:intron | 35.0% |
| ! | GTTGGTTCTTCTGTTATGTT+TGG | - | chr1_4:39025970-39025989 | Msa0162350:intron | 35.0% |
| ! | TTTGGTTTCAGTGATAAGGT+TGG | - | chr1_4:39025988-39026007 | Msa0162350:intron | 35.0% |
| !! | GCTTTAAGGTCTGTTTAGAT+TGG | - | chr1_4:39026258-39026277 | Msa0162350:intron | 35.0% |
| TCACAAGTGTTAATGCTAGT+AGG | + | chr1_4:39026298-39026317 | None:intergenic | 35.0% | |
| GTTTCGTTCAAAATCTATCC+CGG | + | chr1_4:39026397-39026416 | None:intergenic | 35.0% | |
| TTAATTAAGCTGTGTATCCC+AGG | - | chr1_4:39026483-39026502 | Msa0162350:intron | 35.0% | |
| ! | ATGCCATTGTTATTAGCTAG+TGG | - | chr1_4:39026545-39026564 | Msa0162350:intron | 35.0% |
| ATCTACTTCTCCCTAATGAA+AGG | - | chr1_4:39026587-39026606 | Msa0162350:intron | 35.0% | |
| CATAGGACTTCCTTTCATTA+GGG | + | chr1_4:39026600-39026619 | None:intergenic | 35.0% | |
| TCATAGGACTTCCTTTCATT+AGG | + | chr1_4:39026601-39026620 | None:intergenic | 35.0% | |
| CAGAAACCAATCTTTACCTA+AGG | + | chr1_4:39026697-39026716 | None:intergenic | 35.0% | |
| AACCTTAGTCAATAGTAGCT+TGG | - | chr1_4:39026755-39026774 | Msa0162350:CDS | 35.0% | |
| ACCTTAGTCAATAGTAGCTT+GGG | - | chr1_4:39026756-39026775 | Msa0162350:CDS | 35.0% | |
| GTTTGGTAGATGGAAATGAA+CGG | + | chr1_4:39026941-39026960 | None:intergenic | 35.0% | |
| TGGAAGGTTTGTCTTAATTG+AGG | - | chr1_4:39027066-39027085 | Msa0162350:CDS | 35.0% | |
| TCTGAAAAAACTGCCCAAAA+AGG | + | chr1_4:39027229-39027248 | None:intergenic | 35.0% | |
| TACATCTTGAACAGAGCAAA+GGG | - | chr1_4:39027464-39027483 | Msa0162350:intron | 35.0% | |
| !! | ACAACCTGTATCGACTTATA+AGG | - | chr1_4:39027544-39027563 | Msa0162350:intron | 35.0% |
| TCATCCTTATAAGTCGATAC+AGG | + | chr1_4:39027551-39027570 | None:intergenic | 35.0% | |
| GATTCTATACTTGGGAGTTA+GGG | + | chr1_4:39027612-39027631 | None:intergenic | 35.0% | |
| TGATTCTATACTTGGGAGTT+AGG | + | chr1_4:39027613-39027632 | None:intergenic | 35.0% | |
| TGGTCTAGTCAATACTATGA+TGG | + | chr1_4:39027742-39027761 | None:intergenic | 35.0% | |
| TCTATGAAAGACAACAACTG+TGG | + | chr1_4:39028068-39028087 | None:intergenic | 35.0% | |
| TCCAATGATTAATGCTAGCA+TGG | - | chr1_4:39028300-39028319 | Msa0162350:CDS | 35.0% | |
| ACCATGCTAGCATTAATCAT+TGG | + | chr1_4:39028304-39028323 | None:intergenic | 35.0% | |
| TTCATTGCTCTTAGTTGCAA+TGG | - | chr1_4:39028416-39028435 | Msa0162350:intron | 35.0% | |
| TCTTAGTTGCAATGGATAGA+TGG | - | chr1_4:39028424-39028443 | Msa0162350:intron | 35.0% | |
| TATTGACCAGATAGCTAGAA+TGG | - | chr1_4:39028453-39028472 | Msa0162350:intron | 35.0% | |
| ! | TGTCGTAGTAGCTTTACAAA+TGG | - | chr1_4:39028513-39028532 | Msa0162350:intron | 35.0% |
| TGAACTAAGCAACTTGAAAC+TGG | + | chr1_4:39028755-39028774 | None:intergenic | 35.0% | |
| GTAATCTGATAGGTCACTTA+CGG | + | chr1_4:39028987-39029006 | None:intergenic | 35.0% | |
| ! | TGTACTATACTTTTGCAGGT+AGG | - | chr1_4:39029053-39029072 | Msa0162350:intron | 35.0% |
| AATGAAGGAAGACAAGATCA+GGG | + | chr1_4:39029211-39029230 | None:intergenic | 35.0% | |
| TAATGAAGGAAGACAAGATC+AGG | + | chr1_4:39029212-39029231 | None:intergenic | 35.0% | |
| ! | CTTTTACAAGCTTTCCTACA+AGG | + | chr1_4:39029264-39029283 | None:intergenic | 35.0% |
| CTTGTAGGAAAGCTTGTAAA+AGG | - | chr1_4:39029262-39029281 | Msa0162350:intron | 35.0% | |
| ! | AGATTGTCATCATTTTGTGC+TGG | - | chr1_4:39029393-39029412 | Msa0162350:CDS | 35.0% |
| AAGTCATACAAGCACACAAA+AGG | + | chr1_4:39029697-39029716 | None:intergenic | 35.0% | |
| TCTCTCAAGAACCAAATATG+AGG | - | chr1_4:39029816-39029835 | Msa0162350:intron | 35.0% | |
| !!! | AGCATCCATCGATTTTATAG+AGG | - | chr1_4:39029906-39029925 | Msa0162350:intron | 35.0% |
| AGTAAAAAGAATGAGGTCAG+AGG | + | chr1_4:39029943-39029962 | None:intergenic | 35.0% | |
| ATAGATGGTCTTTACTGTGT+TGG | - | chr1_4:39030376-39030395 | Msa0162350:intron | 35.0% | |
| TTGCAAACAGTTTACAGCTA+TGG | + | chr1_4:39030506-39030525 | None:intergenic | 35.0% | |
| GGACATATTTATAGCGTGTT+TGG | - | chr1_4:39030605-39030624 | Msa0162350:intron | 35.0% | |
| ! | ACTCATTTGGATGTGGTTTT+AGG | + | chr1_4:39030637-39030656 | None:intergenic | 35.0% |
| CGTTTAAACTCATTTGGATG+TGG | + | chr1_4:39030644-39030663 | None:intergenic | 35.0% | |
| CATCCAAATGAGTTTAAACG+TGG | - | chr1_4:39030644-39030663 | Msa0162350:CDS | 35.0% | |
| TTCCCACGTTTAAACTCATT+TGG | + | chr1_4:39030650-39030669 | None:intergenic | 35.0% | |
| !! | AAAAAGTCACCTGTTTTGGA+TGG | - | chr1_4:39030840-39030859 | Msa0162350:CDS | 35.0% |
| TCTATAACTGTGTAACTGTG+AGG | + | chr1_4:39031019-39031038 | None:intergenic | 35.0% | |
| ! | AACTGCATAGAATCCGATTT+TGG | - | chr1_4:39031176-39031195 | Msa0162350:five_prime_UTR | 35.0% |
| ! | ACTGCATAGAATCCGATTTT+GGG | - | chr1_4:39031177-39031196 | Msa0162350:five_prime_UTR | 35.0% |
| !!! | TTTAGTATTTTGGTGGGTGG+GGG | - | chr1_4:39025337-39025356 | Msa0162350:three_prime_UTR | 40.0% |
| TTATTTGTCGTTGTTCCACC+AGG | - | chr1_4:39025453-39025472 | Msa0162350:three_prime_UTR | 40.0% | |
| ATAAGGGAATTGAGCATGGT+TGG | + | chr1_4:39025583-39025602 | None:intergenic | 40.0% | |
| GAGTATAAGGGAATTGAGCA+TGG | + | chr1_4:39025587-39025606 | None:intergenic | 40.0% | |
| ! | GGTTAGAAACGGAGAGTATA+AGG | + | chr1_4:39025600-39025619 | None:intergenic | 40.0% |
| TCATATGGGTCATGCTCAAA+TGG | - | chr1_4:39025700-39025719 | Msa0162350:exon | 40.0% | |
| AGTGAAAGGGATGATGAAAG+TGG | - | chr1_4:39025750-39025769 | Msa0162350:CDS | 40.0% | |
| GATGAAAGTGGATGAAGAAG+TGG | - | chr1_4:39025762-39025781 | Msa0162350:CDS | 40.0% | |
| GATGAAGAAGTGGTTGAAAG+TGG | - | chr1_4:39025772-39025791 | Msa0162350:intron | 40.0% | |
| !! | TTATTGGTTCTGGGATTGGT+GGG | - | chr1_4:39025833-39025852 | Msa0162350:intron | 40.0% |
| !!! | TGTGAAAGGTGCTAGAGTTT+TGG | - | chr1_4:39025879-39025898 | Msa0162350:intron | 40.0% |
| !!! | AGGTGCTAGAGTTTTGGTTT+TGG | - | chr1_4:39025885-39025904 | Msa0162350:intron | 40.0% |
| ! | GAGAAGTATGTTATACCTGG+TGG | - | chr1_4:39025907-39025926 | Msa0162350:intron | 40.0% |
| !!! | GGAGTTCTGGCTTTTATCAT+AGG | - | chr1_4:39025929-39025948 | Msa0162350:intron | 40.0% |
| !!! | TTCTGGCTTTTATCATAGGG+AGG | - | chr1_4:39025933-39025952 | Msa0162350:intron | 40.0% |
| !!! | TCTGGCTTTTATCATAGGGA+GGG | - | chr1_4:39025934-39025953 | Msa0162350:intron | 40.0% |
| !! | GAGGGGTATACTTTTGATGT+TGG | - | chr1_4:39025952-39025971 | Msa0162350:intron | 40.0% |
| ACAGACCTTAAAGCCATGTT+TGG | + | chr1_4:39026252-39026271 | None:intergenic | 40.0% | |
| ! | GTGCCACTAGCTAATAACAA+TGG | + | chr1_4:39026551-39026570 | None:intergenic | 40.0% |
| TCTTTACCTAAGGCAACTCA+TGG | + | chr1_4:39026687-39026706 | None:intergenic | 40.0% | |
| GAGTTGCCTTAGGTAAAGAT+TGG | - | chr1_4:39026688-39026707 | Msa0162350:CDS | 40.0% | |
| CCTTAGTCAATAGTAGCTTG+GGG | - | chr1_4:39026757-39026776 | Msa0162350:CDS | 40.0% | |
| AGATGGAAATGAACGGTTGT+CGG | + | chr1_4:39026934-39026953 | None:intergenic | 40.0% | |
| AGCATTCACCGTAGAATTTG+AGG | + | chr1_4:39027047-39027066 | None:intergenic | 40.0% | |
| TCAAATTCTACGGTGAATGC+TGG | - | chr1_4:39027046-39027065 | Msa0162350:CDS | 40.0% | |
| GAGGCAAAAACGCCTTATAA+GGG | + | chr1_4:39027103-39027122 | None:intergenic | 40.0% | |
| TTTCAATGCCCTGAATTCGT+TGG | - | chr1_4:39027175-39027194 | Msa0162350:intron | 40.0% | |
| TTTCAGCTCCAACGAATTCA+GGG | + | chr1_4:39027186-39027205 | None:intergenic | 40.0% | |
| ATTTCAGCTCCAACGAATTC+AGG | + | chr1_4:39027187-39027206 | None:intergenic | 40.0% | |
| CTACATCTTGAACAGAGCAA+AGG | - | chr1_4:39027463-39027482 | Msa0162350:intron | 40.0% | |
| TACTTGGGAGTTAGGGATAT+AGG | + | chr1_4:39027605-39027624 | None:intergenic | 40.0% | |
| AACTCATTCTCTCTCCTGAA+AGG | + | chr1_4:39027712-39027731 | None:intergenic | 40.0% | |
| ! | GAGTCTTATAGAAAGGGACA+AGG | - | chr1_4:39027834-39027853 | Msa0162350:intron | 40.0% |
| GGACAAGGAAAAATCTCAAG+AGG | - | chr1_4:39027849-39027868 | Msa0162350:intron | 40.0% | |
| TCTCAAGAGGATCCTACATT+AGG | - | chr1_4:39027862-39027881 | Msa0162350:intron | 40.0% | |
| CTCAAGAGGATCCTACATTA+GGG | - | chr1_4:39027863-39027882 | Msa0162350:intron | 40.0% | |
| AACGTTAAAATAGGAGGGGT+GGG | + | chr1_4:39027938-39027957 | None:intergenic | 40.0% | |
| TAACGTTAAAATAGGAGGGG+TGG | + | chr1_4:39027939-39027958 | None:intergenic | 40.0% | |
| ACGTACATCTTCAGAGTGAA+TGG | + | chr1_4:39027980-39027999 | None:intergenic | 40.0% | |
| TGGATCCTGAATATACTTCC+GGG | + | chr1_4:39028048-39028067 | None:intergenic | 40.0% | |
| GTGGATCCTGAATATACTTC+CGG | + | chr1_4:39028049-39028068 | None:intergenic | 40.0% | |
| GTTGTCTTTCATAGATGCTG+AGG | - | chr1_4:39028073-39028092 | Msa0162350:intron | 40.0% | |
| ! | GCAGTGTTTTATAGTGAGCA+CGG | - | chr1_4:39028261-39028280 | Msa0162350:intron | 40.0% |
| AGTGTCTAGGAGAGAAGTTA+TGG | - | chr1_4:39028387-39028406 | Msa0162350:intron | 40.0% | |
| ! | TCACTTCCATTCTAGCTATC+TGG | + | chr1_4:39028462-39028481 | None:intergenic | 40.0% |
| !! | AGAAGCACCTTTGGTAATGT+AGG | - | chr1_4:39028670-39028689 | Msa0162350:intron | 40.0% |
| !! | GAAGCACCTTTGGTAATGTA+GGG | - | chr1_4:39028671-39028690 | Msa0162350:intron | 40.0% |
| TTGTCACCCTACATTACCAA+AGG | + | chr1_4:39028680-39028699 | None:intergenic | 40.0% | |
| GTTCTTTGTGACAGACACTT+TGG | - | chr1_4:39028833-39028852 | Msa0162350:intron | 40.0% | |
| TTTGTGACAGACACTTTGGT+GGG | - | chr1_4:39028837-39028856 | Msa0162350:intron | 40.0% | |
| ATTGCAAAGTCCTTGGCAAA+AGG | - | chr1_4:39028890-39028909 | Msa0162350:intron | 40.0% | |
| ! | ATCAACTAGACCTTTTGCCA+AGG | + | chr1_4:39028903-39028922 | None:intergenic | 40.0% |
| GCAAAAGGTCTAGTTGATCA+GGG | - | chr1_4:39028905-39028924 | Msa0162350:intron | 40.0% | |
| GGGTAGTCAGATACTTTACA+AGG | - | chr1_4:39028925-39028944 | Msa0162350:intron | 40.0% | |
| AGGAGAATCACTACCAAAAG+AGG | - | chr1_4:39029282-39029301 | Msa0162350:intron | 40.0% | |
| ! | TGGAAGTTCTCTTCCTCTTT+TGG | + | chr1_4:39029298-39029317 | None:intergenic | 40.0% |
| TGATGACAATCTGTATCTGG+TGG | + | chr1_4:39029385-39029404 | None:intergenic | 40.0% | |
| ! | TTGTCATCATTTTGTGCTGG+AGG | - | chr1_4:39029396-39029415 | Msa0162350:CDS | 40.0% |
| CTAGAACAATTGGACCAGTT+TGG | - | chr1_4:39029504-39029523 | Msa0162350:intron | 40.0% | |
| GATTCATCATTAGCTCCTGA+AGG | - | chr1_4:39029571-39029590 | Msa0162350:CDS | 40.0% | |
| CAACTTCTTCAATGGACGAT+TGG | - | chr1_4:39029617-39029636 | Msa0162350:CDS | 40.0% | |
| CTGCTTCTTTGCCTCATATT+TGG | + | chr1_4:39029830-39029849 | None:intergenic | 40.0% | |
| CAAATATGAGGCAAAGAAGC+AGG | - | chr1_4:39029828-39029847 | Msa0162350:intron | 40.0% | |
| AGTTAGAGTTGGGGGTTAAA+AGG | + | chr1_4:39030129-39030148 | None:intergenic | 40.0% | |
| ! | AAGTATCGTCGATGTGTCTT+AGG | + | chr1_4:39030165-39030184 | None:intergenic | 40.0% |
| ACTTGCTTTCAGAGCATAGA+TGG | - | chr1_4:39030361-39030380 | Msa0162350:intron | 40.0% | |
| GTTATTGCTGTAGCTTTCTC+AGG | - | chr1_4:39030424-39030443 | Msa0162350:intron | 40.0% | |
| ! | GCTATGGAATGTGAGAGTTT+TGG | + | chr1_4:39030490-39030509 | None:intergenic | 40.0% |
| ! | GGAGAAAAAGTCACCTGTTT+TGG | - | chr1_4:39030836-39030855 | Msa0162350:CDS | 40.0% |
| TCTTGTCCATCAAATTGCGA+CGG | + | chr1_4:39031124-39031143 | None:intergenic | 40.0% | |
| ! | TCGCAATTTGATGGACAAGA+TGG | - | chr1_4:39031124-39031143 | Msa0162350:five_prime_UTR | 40.0% |
| ! | GCATGGTTGGTTAATGGAAG+TGG | + | chr1_4:39025570-39025589 | None:intergenic | 45.0% |
| GGTCTTCCATAGCTACATGA+AGG | + | chr1_4:39025673-39025692 | None:intergenic | 45.0% | |
| TATGGGTCATGCTCAAATGG+TGG | - | chr1_4:39025703-39025722 | Msa0162350:exon | 45.0% | |
| TGGTGGTAGAAGAAAAAGGG+TGG | - | chr1_4:39025720-39025739 | Msa0162350:CDS | 45.0% | |
| TGGTAGAAGAAAAAGGGTGG+TGG | - | chr1_4:39025723-39025742 | Msa0162350:CDS | 45.0% | |
| TGGTTGAAAGTGGGAAGAGA+GGG | - | chr1_4:39025782-39025801 | Msa0162350:intron | 45.0% | |
| !! | AAGAGAGGGGATTTTGGTGA+AGG | - | chr1_4:39025796-39025815 | Msa0162350:intron | 45.0% |
| !! | AGAGAGGGGATTTTGGTGAA+GGG | - | chr1_4:39025797-39025816 | Msa0162350:intron | 45.0% |
| !! | GTTATTGGTTCTGGGATTGG+TGG | - | chr1_4:39025832-39025851 | Msa0162350:intron | 45.0% |
| !! | CTGGCTTTTATCATAGGGAG+GGG | - | chr1_4:39025935-39025954 | Msa0162350:intron | 45.0% |
| GCTTATGCATTAGTAGGCCT+GGG | + | chr1_4:39026503-39026522 | None:intergenic | 45.0% | |
| TGCTTATGCATTAGTAGGCC+TGG | + | chr1_4:39026504-39026523 | None:intergenic | 45.0% | |
| TCATGACCATGAGTTGCCTT+AGG | - | chr1_4:39026678-39026697 | Msa0162350:intron | 45.0% | |
| ! | CCCCAAGCTACTATTGACTA+AGG | + | chr1_4:39026760-39026779 | None:intergenic | 45.0% |
| TAGTCAATAGTAGCTTGGGG+TGG | - | chr1_4:39026760-39026779 | Msa0162350:CDS | 45.0% | |
| !! | ACACAAGCATTGGAAGCAGT+TGG | - | chr1_4:39026883-39026902 | Msa0162350:intron | 45.0% |
| CATTGGAAGCAGTTGGTTGT+CGG | - | chr1_4:39026890-39026909 | Msa0162350:intron | 45.0% | |
| AAATGAACGGTTGTCGGATC+AGG | + | chr1_4:39026928-39026947 | None:intergenic | 45.0% | |
| ! | GAGTTACTTTCCCCACGAAA+AGG | - | chr1_4:39027014-39027033 | Msa0162350:CDS | 45.0% |
| TACTTTCCCCACGAAAAGGA+CGG | - | chr1_4:39027018-39027037 | Msa0162350:CDS | 45.0% | |
| GACGGCATCCTCAAATTCTA+CGG | - | chr1_4:39027036-39027055 | Msa0162350:CDS | 45.0% | |
| ATTCTACGGTGAATGCTGGA+AGG | - | chr1_4:39027050-39027069 | Msa0162350:CDS | 45.0% | |
| GGAGGCAAAAACGCCTTATA+AGG | + | chr1_4:39027104-39027123 | None:intergenic | 45.0% | |
| ! | AGGAGCCACTCTACCTTTTT+GGG | - | chr1_4:39027213-39027232 | Msa0162350:CDS | 45.0% |
| AACTGCCCAAAAAGGTAGAG+TGG | + | chr1_4:39027221-39027240 | None:intergenic | 45.0% | |
| CCTAATGTCAAGCATTCACG+AGG | + | chr1_4:39027254-39027273 | None:intergenic | 45.0% | |
| CCTCGTGAATGCTTGACATT+AGG | - | chr1_4:39027251-39027270 | Msa0162350:CDS | 45.0% | |
| ACGTTAAAATAGGAGGGGTG+GGG | + | chr1_4:39027937-39027956 | None:intergenic | 45.0% | |
| CTGAATATACTTCCGGGCTA+TGG | + | chr1_4:39028042-39028061 | None:intergenic | 45.0% | |
| ! | CATAGCCCGGAAGTATATTC+AGG | - | chr1_4:39028040-39028059 | Msa0162350:intron | 45.0% |
| TCAGTTCATTGACCCCTGAT+TGG | - | chr1_4:39028207-39028226 | Msa0162350:intron | 45.0% | |
| AGTGTCTGTCACAAAGAACC+TGG | + | chr1_4:39028832-39028851 | None:intergenic | 45.0% | |
| CTTTGTGACAGACACTTTGG+TGG | - | chr1_4:39028836-39028855 | Msa0162350:intron | 45.0% | |
| GTGGGATTAACTACCCTCTT+GGG | - | chr1_4:39028855-39028874 | Msa0162350:intron | 45.0% | |
| TGGGATTAACTACCCTCTTG+GGG | - | chr1_4:39028856-39028875 | Msa0162350:intron | 45.0% | |
| GGCAAAAGGTCTAGTTGATC+AGG | - | chr1_4:39028904-39028923 | Msa0162350:intron | 45.0% | |
| ACGAGTATTATCACCGAGCA+GGG | - | chr1_4:39028956-39028975 | Msa0162350:intron | 45.0% | |
| ! | TACTTTTGCAGGTAGGAGTG+AGG | - | chr1_4:39029060-39029079 | Msa0162350:intron | 45.0% |
| CTAACCAAATGTGTCCCATC+TGG | + | chr1_4:39029135-39029154 | None:intergenic | 45.0% | |
| ! | CATTTTGTGCTGGAGGTAGT+TGG | - | chr1_4:39029403-39029422 | Msa0162350:CDS | 45.0% |
| GAACAATTGGACCAGTTTGG+AGG | - | chr1_4:39029507-39029526 | Msa0162350:intron | 45.0% | |
| ACCAGTTTGGAGGAACCATA+TGG | - | chr1_4:39029517-39029536 | Msa0162350:intron | 45.0% | |
| TCCATATGGTTCCTCCAAAC+TGG | + | chr1_4:39029521-39029540 | None:intergenic | 45.0% | |
| TGAAGGATATGACGACCTTC+AGG | + | chr1_4:39029589-39029608 | None:intergenic | 45.0% | |
| TTCTTCAATGGACGATTGGC+AGG | - | chr1_4:39029621-39029640 | Msa0162350:CDS | 45.0% | |
| ATATGAGGCAAAGAAGCAGG+TGG | - | chr1_4:39029831-39029850 | Msa0162350:intron | 45.0% | |
| GTTGGGGGTTAAAAGGTTCA+GGG | + | chr1_4:39030122-39030141 | None:intergenic | 45.0% | |
| AGTTGGGGGTTAAAAGGTTC+AGG | + | chr1_4:39030123-39030142 | None:intergenic | 45.0% | |
| TAACCCCCAACTCTAACTCT+AGG | - | chr1_4:39030131-39030150 | Msa0162350:intron | 45.0% | |
| CTACCTAGAGTTAGAGTTGG+GGG | + | chr1_4:39030137-39030156 | None:intergenic | 45.0% | |
| CCTACCTAGAGTTAGAGTTG+GGG | + | chr1_4:39030138-39030157 | None:intergenic | 45.0% | |
| CCCTACCTAGAGTTAGAGTT+GGG | + | chr1_4:39030139-39030158 | None:intergenic | 45.0% | |
| CCCAACTCTAACTCTAGGTA+GGG | - | chr1_4:39030136-39030155 | Msa0162350:intron | 45.0% | |
| TCCCTACCTAGAGTTAGAGT+TGG | + | chr1_4:39030140-39030159 | None:intergenic | 45.0% | |
| AGCATTCCAAAGGGGTTGTT+AGG | - | chr1_4:39030222-39030241 | Msa0162350:intron | 45.0% | |
| CAGCAATAACACCTTGTCCA+GGG | + | chr1_4:39030414-39030433 | None:intergenic | 45.0% | |
| ACAGCAATAACACCTTGTCC+AGG | + | chr1_4:39030415-39030434 | None:intergenic | 45.0% | |
| CATCGAGTAGCTGCAGATAT+TGG | - | chr1_4:39030460-39030479 | Msa0162350:intron | 45.0% | |
| CACGGCAATAGTGATGGTAA+AGG | + | chr1_4:39030680-39030699 | None:intergenic | 45.0% | |
| ! | CAAAAGCACGGCAATAGTGA+TGG | + | chr1_4:39030686-39030705 | None:intergenic | 45.0% |
| !! | TTTTGGATGGCATGCTGCTT+GGG | - | chr1_4:39030853-39030872 | Msa0162350:CDS | 45.0% |
| ! | GCTTGGTTGGTTAAGAACAC+TGG | - | chr1_4:39030878-39030897 | Msa0162350:CDS | 45.0% |
| !!! | ATTTTTTGTTGGGGAGGGAG+AGG | - | chr1_4:39030983-39031002 | Msa0162350:CDS | 45.0% |
| !!! | TTTTTTGTTGGGGAGGGAGA+GGG | - | chr1_4:39030984-39031003 | Msa0162350:CDS | 45.0% |
| !! | AGAATCCGATTTTGGGAGTG+AGG | - | chr1_4:39031184-39031203 | Msa0162350:five_prime_UTR | 45.0% |
| !! | GAATCCGATTTTGGGAGTGA+GGG | - | chr1_4:39031185-39031204 | Msa0162350:five_prime_UTR | 45.0% |
| !! | AATCCGATTTTGGGAGTGAG+GGG | - | chr1_4:39031186-39031205 | Msa0162350:five_prime_UTR | 45.0% |
| !! | AATAAAAATAAAAATGTAAA+CGG | - | chr1_4:39025430-39025449 | Msa0162350:three_prime_UTR | 5.0% |
| ! | GATGGGGGTGTGGTTAGAAA+CGG | + | chr1_4:39025611-39025630 | None:intergenic | 50.0% |
| ! | GGTGTGATGGTAGATGATGG+GGG | + | chr1_4:39025626-39025645 | None:intergenic | 50.0% |
| GGGTGTGATGGTAGATGATG+GGG | + | chr1_4:39025627-39025646 | None:intergenic | 50.0% | |
| GGGGTGTGATGGTAGATGAT+GGG | + | chr1_4:39025628-39025647 | None:intergenic | 50.0% | |
| TGGGGTGTGATGGTAGATGA+TGG | + | chr1_4:39025629-39025648 | None:intergenic | 50.0% | |
| ACTTTGTAGGTGGGGTGTGA+TGG | + | chr1_4:39025639-39025658 | None:intergenic | 50.0% | |
| ! | AGGGTGGTGGTGAAAGTGAA+AGG | - | chr1_4:39025736-39025755 | Msa0162350:CDS | 50.0% |
| ! | GGGTGGTGGTGAAAGTGAAA+GGG | - | chr1_4:39025737-39025756 | Msa0162350:CDS | 50.0% |
| GTGGTTGAAAGTGGGAAGAG+AGG | - | chr1_4:39025781-39025800 | Msa0162350:intron | 50.0% | |
| GGTTGAAAGTGGGAAGAGAG+GGG | - | chr1_4:39025783-39025802 | Msa0162350:intron | 50.0% | |
| ! | AGTGGGAAGAGAGGGGATTT+TGG | - | chr1_4:39025790-39025809 | Msa0162350:intron | 50.0% |
| GTTATACCTGGTGGGAGTTC+TGG | - | chr1_4:39025916-39025935 | Msa0162350:intron | 50.0% | |
| TAAAAGCCAGAACTCCCACC+AGG | + | chr1_4:39025925-39025944 | None:intergenic | 50.0% | |
| !! | CTGAGAGGTGGTTTGGTAGA+TGG | + | chr1_4:39026951-39026970 | None:intergenic | 50.0% |
| ACTCGAACTGAGAGGTGGTT+TGG | + | chr1_4:39026958-39026977 | None:intergenic | 50.0% | |
| GTGACTGCAGCTCCCTTATA+AGG | - | chr1_4:39027088-39027107 | Msa0162350:CDS | 50.0% | |
| GTTGGAGCTGAAATCGCTTG+AGG | - | chr1_4:39027193-39027212 | Msa0162350:intron | 50.0% | |
| ! | GAGGAGCCACTCTACCTTTT+TGG | - | chr1_4:39027212-39027231 | Msa0162350:CDS | 50.0% |
| GGATCCTACATTAGGGACAG+AGG | - | chr1_4:39027870-39027889 | Msa0162350:intron | 50.0% | |
| TCCTACATTAGGGACAGAGG+CGG | - | chr1_4:39027873-39027892 | Msa0162350:intron | 50.0% | |
| TTAGGGACAGAGGCGGTATA+TGG | - | chr1_4:39027880-39027899 | Msa0162350:intron | 50.0% | |
| CGTTAAAATAGGAGGGGTGG+GGG | + | chr1_4:39027936-39027955 | None:intergenic | 50.0% | |
| ! | GCTATGGCTCCAGCATTTTG+AGG | + | chr1_4:39028026-39028045 | None:intergenic | 50.0% |
| AAAATGCTGGAGCCATAGCC+CGG | - | chr1_4:39028027-39028046 | Msa0162350:intron | 50.0% | |
| !! | GGATGATGCAGAAGCACCTT+TGG | - | chr1_4:39028661-39028680 | Msa0162350:intron | 50.0% |
| AGAGAGAGCAAGAGAGACAG+AGG | + | chr1_4:39028778-39028797 | None:intergenic | 50.0% | |
| GGTGGGATTAACTACCCTCT+TGG | - | chr1_4:39028854-39028873 | Msa0162350:intron | 50.0% | |
| GGGATTAACTACCCTCTTGG+GGG | - | chr1_4:39028857-39028876 | Msa0162350:intron | 50.0% | |
| TGGTGGGATTGCAAAGTCCT+TGG | - | chr1_4:39028883-39028902 | Msa0162350:intron | 50.0% | |
| CACGAGTATTATCACCGAGC+AGG | - | chr1_4:39028955-39028974 | Msa0162350:intron | 50.0% | |
| GTAGGAGTGAGGCTTTCAGA+CGG | - | chr1_4:39029071-39029090 | Msa0162350:intron | 50.0% | |
| GCTACCAGATGGGACACATT+TGG | - | chr1_4:39029128-39029147 | Msa0162350:intron | 50.0% | |
| ACACATGGGGGTTAAAGCAG+AGG | - | chr1_4:39029354-39029373 | Msa0162350:CDS | 50.0% | |
| TCAATGGACGATTGGCAGGT+AGG | - | chr1_4:39029625-39029644 | Msa0162350:CDS | 50.0% | |
| AGGTAGGCAATACCGAGTAG+TGG | - | chr1_4:39029641-39029660 | Msa0162350:CDS | 50.0% | |
| CCCCAACTCTAACTCTAGGT+AGG | - | chr1_4:39030135-39030154 | Msa0162350:intron | 50.0% | |
| TCCATAAGTACCCTCGTCAC+GGG | + | chr1_4:39030190-39030209 | None:intergenic | 50.0% | |
| GTCCATAAGTACCCTCGTCA+CGG | + | chr1_4:39030191-39030210 | None:intergenic | 50.0% | |
| ! | TTTGGAATGCTGCGTGGCAT+TGG | + | chr1_4:39030213-39030232 | None:intergenic | 50.0% |
| AATGCCACGCAGCATTCCAA+AGG | - | chr1_4:39030212-39030231 | Msa0162350:intron | 50.0% | |
| ATGCCACGCAGCATTCCAAA+GGG | - | chr1_4:39030213-39030232 | Msa0162350:intron | 50.0% | |
| GGCATTCCTAACAACCCCTT+TGG | + | chr1_4:39030231-39030250 | None:intergenic | 50.0% | |
| AGCAGCATGCCATCCAAAAC+AGG | + | chr1_4:39030852-39030871 | None:intergenic | 50.0% | |
| !! | GTTTTGGATGGCATGCTGCT+TGG | - | chr1_4:39030852-39030871 | Msa0162350:CDS | 50.0% |
| ! | TTTTTGTTGGGGAGGGAGAG+GGG | - | chr1_4:39030985-39031004 | Msa0162350:CDS | 50.0% |
| !! | GATGGTAGATGATGGGGGTG+TGG | + | chr1_4:39025621-39025640 | None:intergenic | 55.0% |
| !! | TGGTTCTGGGATTGGTGGGT+TGG | - | chr1_4:39025837-39025856 | Msa0162350:intron | 55.0% |
| !! | GGATTGGTGGGTTGGTTGCT+GGG | - | chr1_4:39025845-39025864 | Msa0162350:intron | 55.0% |
| GTTGGTTGCTGGGACTCAGT+TGG | - | chr1_4:39025855-39025874 | Msa0162350:intron | 55.0% | |
| GGGACTCAGTTGGCTGTGAA+AGG | - | chr1_4:39025865-39025884 | Msa0162350:intron | 55.0% | |
| AGCAGTTGGTTGTCGGATGC+AGG | - | chr1_4:39026897-39026916 | Msa0162350:intron | 55.0% | |
| TGTGCACTCGAACTGAGAGG+TGG | + | chr1_4:39026963-39026982 | None:intergenic | 55.0% | |
| CTCTGTGCACTCGAACTGAG+AGG | + | chr1_4:39026966-39026985 | None:intergenic | 55.0% | |
| ! | AGGATGCCGTCCTTTTCGTG+GGG | + | chr1_4:39027027-39027046 | None:intergenic | 55.0% |
| ! | GAGGATGCCGTCCTTTTCGT+GGG | + | chr1_4:39027028-39027047 | None:intergenic | 55.0% |
| ! | TGAGGATGCCGTCCTTTTCG+TGG | + | chr1_4:39027029-39027048 | None:intergenic | 55.0% |
| ACCGCCTCTGTCCCTAATGT+AGG | + | chr1_4:39027877-39027896 | None:intergenic | 55.0% | |
| GGGTGGGTGTGTATAGAAGG+TGG | + | chr1_4:39027916-39027935 | None:intergenic | 55.0% | |
| TGGGGGTGGGTGTGTATAGA+AGG | + | chr1_4:39027919-39027938 | None:intergenic | 55.0% | |
| AAAATAGGAGGGGTGGGGGT+GGG | + | chr1_4:39027932-39027951 | None:intergenic | 55.0% | |
| TAAAATAGGAGGGGTGGGGG+TGG | + | chr1_4:39027933-39027952 | None:intergenic | 55.0% | |
| ! | AACTACCCTCTTGGGGGTGT+TGG | - | chr1_4:39028863-39028882 | Msa0162350:intron | 55.0% |
| ACTTACGGCTTTGCCCTGCT+CGG | + | chr1_4:39028972-39028991 | None:intergenic | 55.0% | |
| TCGATGGATGCTCGAAGACC+TGG | + | chr1_4:39029898-39029917 | None:intergenic | 55.0% | |
| ACGATACTTAGCCCGTGACG+AGG | - | chr1_4:39030176-39030195 | Msa0162350:intron | 55.0% | |
| CGATACTTAGCCCGTGACGA+GGG | - | chr1_4:39030177-39030196 | Msa0162350:intron | 55.0% | |
| TGCCACGCAGCATTCCAAAG+GGG | - | chr1_4:39030214-39030233 | Msa0162350:intron | 55.0% | |
| !! | AACCCCTTTGGAATGCTGCG+TGG | + | chr1_4:39030219-39030238 | None:intergenic | 55.0% |
| GTTGGAGACAGTTGCTTCCC+TGG | - | chr1_4:39030394-39030413 | Msa0162350:intron | 55.0% | |
| GACAGTTGCTTCCCTGGACA+AGG | - | chr1_4:39030400-39030419 | Msa0162350:intron | 55.0% | |
| ! | TGCTGCTTGGGTTGCTTGGT+TGG | - | chr1_4:39030865-39030884 | Msa0162350:CDS | 55.0% |
| GCTGCTCCGTCGCAATTTGA+TGG | - | chr1_4:39031115-39031134 | Msa0162350:five_prime_UTR | 55.0% | |
| CAGCCCCTCACTCCCAAAAT+CGG | + | chr1_4:39031192-39031211 | None:intergenic | 55.0% | |
| !! | GGGATTGGTGGGTTGGTTGC+TGG | - | chr1_4:39025844-39025863 | Msa0162350:intron | 60.0% |
| !! | TACCCTCTTGGGGGTGTTGG+TGG | - | chr1_4:39028866-39028885 | Msa0162350:intron | 60.0% |
| !! | ACCCTCTTGGGGGTGTTGGT+GGG | - | chr1_4:39028867-39028886 | Msa0162350:intron | 60.0% |
| TCCCACCAACACCCCCAAGA+GGG | + | chr1_4:39028871-39028890 | None:intergenic | 60.0% | |
| ATCCCACCAACACCCCCAAG+AGG | + | chr1_4:39028872-39028891 | None:intergenic | 60.0% | |
| !! | GCCCGTGACGAGGGTACTTA+TGG | - | chr1_4:39030186-39030205 | Msa0162350:intron | 60.0% |
| ! | GGCATGCTGCTTGGGTTGCT+TGG | - | chr1_4:39030861-39030880 | Msa0162350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39025282 | 39031333 | 39025282 | ID=Msa0162350;Name=Msa0162350 |
| chr1_4 | mRNA | 39025282 | 39031333 | 39025282 | ID=Msa0162350-mRNA-1;Parent=Msa0162350;Name=Msa0162350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=304|1|1|1|1|1|13|428|596 |
| chr1_4 | exon | 39025282 | 39025783 | 39025282 | ID=Msa0162350-mRNA-1:exon:11387;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39026134 | 39026242 | 39026134 | ID=Msa0162350-mRNA-1:exon:11386;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39026352 | 39026462 | 39026352 | ID=Msa0162350-mRNA-1:exon:11385;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39026688 | 39026801 | 39026688 | ID=Msa0162350-mRNA-1:exon:11384;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39026973 | 39027107 | 39026973 | ID=Msa0162350-mRNA-1:exon:11383;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39027198 | 39027346 | 39027198 | ID=Msa0162350-mRNA-1:exon:11382;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39027466 | 39027544 | 39027466 | ID=Msa0162350-mRNA-1:exon:11381;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39027630 | 39027782 | 39027630 | ID=Msa0162350-mRNA-1:exon:11380;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39028294 | 39028350 | 39028294 | ID=Msa0162350-mRNA-1:exon:11379;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39028521 | 39028603 | 39028521 | ID=Msa0162350-mRNA-1:exon:11378;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39029343 | 39029442 | 39029343 | ID=Msa0162350-mRNA-1:exon:11377;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39029544 | 39029750 | 39029544 | ID=Msa0162350-mRNA-1:exon:11376;Parent=Msa0162350-mRNA-1 |
| chr1_4 | exon | 39030610 | 39031333 | 39030610 | ID=Msa0162350-mRNA-1:exon:11375;Parent=Msa0162350-mRNA-1 |
| chr1_4 | five_prime_UTR | 39031030 | 39031333 | 39031030 | ID=Msa0162350-mRNA-1:five_prime_utr;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39030610 | 39031029 | 39030610 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39029544 | 39029750 | 39029544 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39029343 | 39029442 | 39029343 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39028521 | 39028603 | 39028521 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39028294 | 39028350 | 39028294 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39027630 | 39027782 | 39027630 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39027466 | 39027544 | 39027466 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39027198 | 39027346 | 39027198 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39026973 | 39027107 | 39026973 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39026688 | 39026801 | 39026688 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39026352 | 39026462 | 39026352 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39026134 | 39026242 | 39026134 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | CDS | 39025710 | 39025783 | 39025710 | ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1 |
| chr1_4 | three_prime_UTR | 39025282 | 39025709 | 39025282 | ID=Msa0162350-mRNA-1:three_prime_utr;Parent=Msa0162350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
