AlfalfaGEDB | Msa0162350

M. sativa cultivar zhongmu-4 / Msa0162350

KEGG: K09835
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
PFAM: PF01593.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0162350	XP_013467775.1	97.651	596	14	0	1	596	1	596	0.0	1199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0162350	sp\|Q8S4R4\|CRTSO_SOLLC	81.317	562	102	1	38	596	54	615	0.0	945

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0162350	A0A072VJ38	97.651	596	14	0	1	596	1	596	0.0	1199

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0060720	Msa0162350	0.801338	9.437427e-49	-8.615850e-47
Msa0064310	Msa0162350	0.800001	1.768256e-48	-8.615850e-47
Msa0069070	Msa0162350	0.806504	7.967951e-50	-8.615850e-47
Msa0069230	Msa0162350	0.800960	1.127551e-48	-8.615850e-47
Msa0070580	Msa0162350	0.806509	7.945332e-50	-8.615850e-47
Msa0076590	Msa0162350	0.811329	7.391660e-51	-8.615850e-47
Msa0076990	Msa0162350	0.804341	2.263246e-49	-8.615850e-47
Msa0162170	Msa0162350	0.805607	1.230489e-49	-8.615850e-47
Msa0162350	Msa0273780	0.818961	1.491487e-52	-8.615850e-47
Msa0162350	Msa0389890	0.803545	3.312615e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0162350	MtrunA17_Chr1g0176461	97.651	596	14	0	1	596	1	596	0.0	1199
Msa0162350	MtrunA17_Chr0c12g0493641	31.779	579	325	22	42	584	38	582	1.50e-64	222
Msa0162350	MtrunA17_Chr4g0077041	36.667	210	122	8	354	557	26	230	8.02e-34	129
Msa0162350	MtrunA17_Chr1g0162681	23.006	539	339	19	79	555	23	547	5.57e-13	71.6
Msa0162350	MtrunA17_Chr8g0373291	23.750	560	344	19	79	572	22	564	1.21e-12	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0162350	AT1G06820.1	86.719	512	67	1	70	580	68	579	0.0	921
Msa0162350	AT1G06820.3	85.493	517	72	2	70	585	68	582	0.0	913
Msa0162350	AT1G06820.4	86.878	442	58	0	139	580	19	460	0.0	810
Msa0162350	AT1G06820.2	85.880	432	60	1	70	500	68	499	0.0	766
Msa0162350	AT1G57770.1	31.054	541	319	21	80	586	54	574	1.59e-59	208
Msa0162350	AT5G49555.1	23.268	563	340	20	79	572	14	553	7.16e-16	81.3

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Find 177 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTGGAGCCATAGCC+CGG	0.498070	1_4:-39028566	Msa0162350:CDS
AAACTTACTGTTGTGTTAAA+CGG	0.378010	1_4:+39026344	None:intergenic
AAAGATTGAAACTTTGTAGG+TGG	0.509708	1_4:+39030947	None:intergenic
AAATGAACGGTTGTCGGATC+AGG	0.442725	1_4:+39029668	None:intergenic
AAATGATGACAATCTGTATC+TGG	0.425094	1_4:+39027208	None:intergenic
AACCATGAAAATGAAGCAAT+CGG	0.473947	1_4:+39031282	None:intergenic
AACCCCTTTGGAATGCTGCG+TGG	0.680893	1_4:+39026377	None:intergenic
AACTGCATAGAATCCGATTT+TGG	0.215825	1_4:-39025417	Msa0162350:three_prime_UTR
AAGAAGTTGTGAATATATGA+AGG	0.541078	1_4:+39026990	None:intergenic
AAGATTGAAACTTTGTAGGT+GGG	0.478712	1_4:+39030948	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATGAAAATGAAGCAAT+CGG	+	chr1_4:39025314-39025333	None:intergenic	30.0%
AAGATTGAAACTTTGTAGGT+GGG	+	chr1_4:39025648-39025667	None:intergenic	30.0%
AAAGATTGAAACTTTGTAGG+TGG	+	chr1_4:39025649-39025668	None:intergenic	30.0%
GGTAAAGATTGAAACTTTGT+AGG	+	chr1_4:39025652-39025671	None:intergenic	30.0%
AAATGGTGGTAGAAGAAAAA+GGG	-	chr1_4:39025717-39025736	Msa0162350:CDS	30.0%
AGAGTTCAATGTTATAGTGA+AGG	-	chr1_4:39026051-39026070	Msa0162350:intron	30.0%
ATAAGCTAGAAAACAACTGA+TGG	+	chr1_4:39026361-39026380	None:intergenic	30.0%
GCTTATATCTATAAGTTCTC+CGG	-	chr1_4:39026375-39026394	Msa0162350:CDS	30.0%
CTTATATCTATAAGTTCTCC+GGG	-	chr1_4:39026376-39026395	Msa0162350:CDS	30.0%
CGCTAATATCATAAGTACTT+AGG	+	chr1_4:39026462-39026481	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	39025282	39031333	39025282	ID=Msa0162350;Name=Msa0162350
chr1_4	mRNA	39025282	39031333	39025282	ID=Msa0162350-mRNA-1;Parent=Msa0162350;Name=Msa0162350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=304\|1\|1\|1\|1\|1\|13\|428\|596
chr1_4	exon	39025282	39025783	39025282	ID=Msa0162350-mRNA-1:exon:11387;Parent=Msa0162350-mRNA-1
chr1_4	exon	39026134	39026242	39026134	ID=Msa0162350-mRNA-1:exon:11386;Parent=Msa0162350-mRNA-1
chr1_4	exon	39026352	39026462	39026352	ID=Msa0162350-mRNA-1:exon:11385;Parent=Msa0162350-mRNA-1
chr1_4	exon	39026688	39026801	39026688	ID=Msa0162350-mRNA-1:exon:11384;Parent=Msa0162350-mRNA-1
chr1_4	exon	39026973	39027107	39026973	ID=Msa0162350-mRNA-1:exon:11383;Parent=Msa0162350-mRNA-1
chr1_4	exon	39027198	39027346	39027198	ID=Msa0162350-mRNA-1:exon:11382;Parent=Msa0162350-mRNA-1
chr1_4	exon	39027466	39027544	39027466	ID=Msa0162350-mRNA-1:exon:11381;Parent=Msa0162350-mRNA-1
chr1_4	exon	39027630	39027782	39027630	ID=Msa0162350-mRNA-1:exon:11380;Parent=Msa0162350-mRNA-1
chr1_4	exon	39028294	39028350	39028294	ID=Msa0162350-mRNA-1:exon:11379;Parent=Msa0162350-mRNA-1
chr1_4	exon	39028521	39028603	39028521	ID=Msa0162350-mRNA-1:exon:11378;Parent=Msa0162350-mRNA-1
chr1_4	exon	39029343	39029442	39029343	ID=Msa0162350-mRNA-1:exon:11377;Parent=Msa0162350-mRNA-1
chr1_4	exon	39029544	39029750	39029544	ID=Msa0162350-mRNA-1:exon:11376;Parent=Msa0162350-mRNA-1
chr1_4	exon	39030610	39031333	39030610	ID=Msa0162350-mRNA-1:exon:11375;Parent=Msa0162350-mRNA-1
chr1_4	five_prime_UTR	39031030	39031333	39031030	ID=Msa0162350-mRNA-1:five_prime_utr;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39030610	39031029	39030610	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39029544	39029750	39029544	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39029343	39029442	39029343	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39028521	39028603	39028521	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39028294	39028350	39028294	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39027630	39027782	39027630	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39027466	39027544	39027466	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39027198	39027346	39027198	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39026973	39027107	39026973	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39026688	39026801	39026688	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39026352	39026462	39026352	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39026134	39026242	39026134	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	CDS	39025710	39025783	39025710	ID=Msa0162350-mRNA-1:cds;Parent=Msa0162350-mRNA-1
chr1_4	three_prime_UTR	39025282	39025709	39025282	ID=Msa0162350-mRNA-1:three_prime_utr;Parent=Msa0162350-mRNA-1

Gene Sequence

>Msa0162350

ATGCTCAATTCCCTTATACTCTCCGTTTCTAACCACACCCCCATCATCTACCATCACACCCCACCTACAAAGTTTCAATCTTTACCTTCATGTAGCTATGGAAGACCTCAATTTTCATATGGGTCATGCTCAAATGGTGGTAGAAGAAAAAGGGTGGTGGTGAAAGTGAAAGGGATGATGAAAGTGGATGAAGAAGTGGTTGAAAGTGGGAAGAGAGGGGATTTTGGTGAAGGGTTTGATGCAATTGTTATTGGTTCTGGGATTGGTGGGTTGGTTGCTGGGACTCAGTTGGCTGTGAAAGGTGCTAGAGTTTTGGTTTTGGAGAAGTATGTTATACCTGGTGGGAGTTCTGGCTTTTATCATAGGGAGGGGTATACTTTTGATGTTGGTTCTTCTGTTATGTTTGGTTTCAGTGATAAGGGTAATCTCAATTTGATAACACAAGCATTGGAAGCAGTTGGTTGTCGGATGCAGGTAATACCTGATCCGACAACCGTTCATTTCCATCTACCAAACCACCTCTCAGTTCGAGTGCACAGAGAATATGATAAGTTCATTGAAGAACTGACGAGTTACTTTCCCCACGAAAAGGACGGCATCCTCAAATTCTACGGTGAATGCTGGAAGATTTTCAATGCCCTGAATTCGTTGGAGCTGAAATCGCTTGAGGAGCCACTCTACCTTTTTGGGCAGTTTTTTCAGAAGCCTCGTGAATGCTTGACATTAGCCTATTATTTGCCTCAAAATGCTGGAGCCATAGCCCGGAAGTATATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCTGAGTGTTTTATAGTGAGCACGGTCAACGCTTTGCAGACTCCAATGATTAATGCTAGCATGGTTCTTTGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGGGGTGTTGGTGGGATTGCAAAGTCCTTGGCAAAAGGTCTAGTTGATCAGGGTAGTCAGATACTTTACAAGGCAAATGTCACGAGTATTATCACCGAGCAGGGCAAAGCCGTAGGAGTGAGGCTTTCAGACGGCAGAGAGTTTTTTGCCAAAACCATAATATCAAATGCTACCAGATGGGACACATTTGGAAAGCTTGTAAAAGGAGAATCACTACCAAAAGAGGAAGAGAACTTCCAAAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATACACATGGGGGTTAAAGCAGAGGTTTTACCACCAGATACAGATTGTCATCATTTTGTGCTGGAGAACAATTGGACCAGTTTGGAGGAACCATATGGAAGTATCTTTTTGAGTATACCGACTATACTTGATTCATCATTAGCTCCTGAAGGTCGTCATATCCTTCATATATTCACAACTTCTTCAATGGACGATTGGCAGGGTCTCTCAAGAACCAAATATGAGGCAAAGAAGCAGGTGGTAGCAGATGAAATCATAAGCAGATTAGAGAAGAAATTGTTTCCAGGTCTTCGAGCATCCATCGATTTTATAGAGGTAGGGACACCTAAGACACATCGACGATACTTAGCCCGTGACGAGGGTACTTATGGACCAATGCCACGCAGCATTCCAAAGGGGTTGTTAGGAATGCCGTTTAACACAACAAGCATAGATGGTCTTTACTGTGTTGGAGACAGTTGCTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGGGTTGGAGAAAAAGTCACCTGTTTTGGATGGCATGCTGCTTGGGTTGCTTGGTTGGTTAAGAACACTGGCATGA

Protein sequence

>Msa0162350

MLNSLILSVSNHTPIIYHHTPPTKFQSLPSCSYGRPQFSYGSCSNGGRRKRVVVKVKGMMKVDEEVVESGKRGDFGEGFDAIVIGSGIGGLVAGTQLAVKGARVLVLEKYVIPGGSSGFYHREGYTFDVGSSVMFGFSDKGNLNLITQALEAVGCRMQVIPDPTTVHFHLPNHLSVRVHREYDKFIEELTSYFPHEKDGILKFYGECWKIFNALNSLELKSLEEPLYLFGQFFQKPRECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPLGGVGGIAKSLAKGLVDQGSQILYKANVTSIITEQGKAVGVRLSDGREFFAKTIISNATRWDTFGKLVKGESLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLENNWTSLEEPYGSIFLSIPTILDSSLAPEGRHILHIFTTSSMDDWQGLSRTKYEAKKQVVADEIISRLEKKLFPGLRASIDFIEVGTPKTHRRYLARDEGTYGPMPRSIPKGLLGMPFNTTSIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDGMLLGLLGWLRTLA*