AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1148100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148100 MtrunA17_Chr7g0236071 96.569 204 7 0 1 204 1 204 2.61e-91 266
Msa1148100 MtrunA17_Chr2g0290461 43.254 252 95 7 1 205 1 251 2.56e-45 150
Msa1148100 MtrunA17_Chr4g0076261 80.556 72 14 0 4 75 8 79 6.00e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148100 AT4G16380.3 66.667 75 25 0 2 76 13 87 2.93e-30 112
Msa1148100 AT4G16380.1 66.667 75 25 0 2 76 6 80 3.11e-30 112
Msa1148100 AT1G51090.1 36.098 205 97 5 1 205 1 171 1.48e-24 95.1
Msa1148100 AT1G49420.1 34.597 211 104 8 2 205 6 189 2.44e-19 82.0
Msa1148100 AT4G16380.2 64.444 45 16 0 32 76 15 59 1.87e-14 70.1

Find 91 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCGCCGGTTGTTCCTTA+TGG 0.155901 7_4:+27969133 Msa1148100:CDS
GTTCCTTATGGGCATGTTTA+TGG 0.183974 7_4:+27969145 Msa1148100:CDS
CATTCTTCTCATCATATATT+TGG 0.199717 7_4:-27968790 None:intergenic
CTTCGCCGGTTGTTCCTTAT+GGG 0.236397 7_4:+27969134 Msa1148100:CDS
TCAAATAATATGAATGAAAA+AGG 0.277853 7_4:-27968165 None:intergenic
AACTATTTCTATGCTCTTGA+TGG 0.278008 7_4:-27968888 None:intergenic
CACAAGGACCCTTCAAATTA+TGG 0.285976 7_4:-27969293 None:intergenic
ATATTGTCTCTTACCTTCTC+TGG 0.310383 7_4:-27968845 None:intergenic
TCCGGTGCTGGCTTAGGCTT+TGG 0.325919 7_4:-27968917 None:intergenic
CTTTGATGTTTCCTTGAGTT+TGG 0.339295 7_4:-27969415 None:intergenic
GCCGGAGCTGGTGCCGGAGC+TGG 0.340628 7_4:-27969028 None:intergenic
ATCGGCTTTGCCTCGGCCAC+GGG 0.356925 7_4:-27968965 None:intergenic
TCTTTGGGCTTCTCCGGTGC+TGG 0.363635 7_4:-27968929 None:intergenic
GCCGGAGCTGGAGCTGGACT+TGG 0.364027 7_4:-27969016 None:intergenic
GTCAACCTTGAGCCTCATTA+TGG 0.368431 7_4:-27968408 None:intergenic
AGAGACAGAGCTTAGATCTA+AGG 0.370882 7_4:-27968197 None:intergenic
CCATCCATAACTATCGTATA+CGG 0.371058 7_4:-27969206 None:intergenic
GGCGGGCCAGGTTGTGCAAT+CGG 0.376262 7_4:-27968983 None:intergenic
GCTGGTGCCGGAGCTGGAGC+TGG 0.380110 7_4:-27969022 None:intergenic
TGGGTCATCACCACGATTGC+TGG 0.388653 7_4:+27969245 Msa1148100:CDS
TGTAATATAAACATGGGATA+TGG 0.396482 7_4:-27969487 None:intergenic
GCCGGTGCCTGAGCCGGAGC+TGG 0.401075 7_4:-27969040 None:intergenic
AATCGGCTTTGCCTCGGCCA+CGG 0.401999 7_4:-27968966 None:intergenic
GCTGCAGCATACCACTCTTA+TGG 0.404214 7_4:-27968822 None:intergenic
GCCTGAGCCGGAGCTGGTGC+CGG 0.417776 7_4:-27969034 None:intergenic
TATGGGCATGTTTATGGTGC+TGG 0.421138 7_4:+27969151 Msa1148100:CDS
TCTTGCTCTTTGGGCTTCTC+CGG 0.421516 7_4:-27968935 None:intergenic
TCCAGCTCCGGCACCAGCTC+CGG 0.434194 7_4:+27969027 Msa1148100:CDS
TCCGGCACCAGCTCCGGCTC+AGG 0.434564 7_4:+27969033 Msa1148100:CDS
GTGGAGGAGAATGATTATAA+AGG 0.446007 7_4:+27969313 Msa1148100:three_prime_UTR
ACATGCCCATAAGGAACAAC+CGG 0.459447 7_4:-27969139 None:intergenic
TATTGTCTCTTACCTTCTCT+GGG 0.459846 7_4:-27968844 None:intergenic
ATAAGCTTGAATATAAAGAT+AGG 0.462418 7_4:-27968090 None:intergenic
CATGTTTATGGTGCTGGACA+AGG 0.462627 7_4:+27969157 Msa1148100:CDS
GGTGCAGCCGCAGAAGGAAG+TGG 0.463745 7_4:-27969064 None:intergenic
GCCGCAGAAGGAAGTGGAGC+CGG 0.472958 7_4:-27969058 None:intergenic
AGTGGAGCCGGTGCCTGAGC+CGG 0.473677 7_4:-27969046 None:intergenic
TCTCTAAGCCATGGAGCAAA+AGG 0.474451 7_4:+27968215 Msa1148100:exon
GAGACAATATTTGTTGTCAA+GGG 0.480293 7_4:+27968858 Msa1148100:CDS
ACCAGCTCCGGCTCAGGCAC+CGG 0.483282 7_4:+27969039 Msa1148100:CDS
GGCTTCTCCGGTGCTGGCTT+AGG 0.485298 7_4:-27968923 None:intergenic
GCACCATAAACATGCCCATA+AGG 0.487789 7_4:-27969148 None:intergenic
TTGTGCAATCGGCTTTGCCT+CGG 0.490744 7_4:-27968972 None:intergenic
CATTCTTGCATATCCTTCGC+CGG 0.492866 7_4:+27969120 Msa1148100:CDS
GGTGCTGGCTTAGGCTTTGG+TGG 0.493037 7_4:-27968914 None:intergenic
CGACATGTACCATAATTTGA+AGG 0.496633 7_4:+27969284 Msa1148100:CDS
CTTCTTCGCGCCAGCAATCG+TGG 0.498790 7_4:-27969255 None:intergenic
TCCAAGTCCAGCTCCAGCTC+CGG 0.508493 7_4:+27969015 Msa1148100:CDS
GCAAAGCCGATTGCACAACC+TGG 0.511042 7_4:+27968977 Msa1148100:CDS
AGAGACAATATTTGTTGTCA+AGG 0.511179 7_4:+27968857 Msa1148100:CDS
CGATTGCTGGCGCGAAGAAG+AGG 0.521477 7_4:+27969258 Msa1148100:CDS
CAAATATATGATGAGAAGAA+TGG 0.524975 7_4:+27968791 Msa1148100:CDS
CGGCGAAGGATATGCAAGAA+TGG 0.537703 7_4:-27969119 None:intergenic
CATAATTTGAAGGGTCCTTG+TGG 0.546024 7_4:+27969294 Msa1148100:exon
AGGCCCGTATACGATAGTTA+TGG 0.549421 7_4:+27969202 Msa1148100:CDS
ATAAAATTGTAATATAAACA+TGG 0.556668 7_4:-27969494 None:intergenic
TGGTGATGACCCACGTAACA+AGG 0.557049 7_4:-27969235 None:intergenic
TACGATAGTTATGGATGGAG+TGG 0.565922 7_4:+27969211 Msa1148100:CDS
CGTTGTGTGAGGATACATTA+CGG 0.566562 7_4:-27969089 None:intergenic
ACGGCTGGTGCAGCCGCAGA+AGG 0.567449 7_4:-27969070 None:intergenic
TAAAATTGTAATATAAACAT+GGG 0.567617 7_4:-27969493 None:intergenic
TTCAAAACTCACCAAACTCA+AGG 0.569464 7_4:+27969404 Msa1148100:three_prime_UTR
TTATGCAGGTTGCCATAATG+AGG 0.576681 7_4:+27968396 Msa1148100:intron
ACCAAAGCCTAAGCCAGCAC+CGG 0.577557 7_4:+27968916 Msa1148100:CDS
ACGATAGTTATGGATGGAGT+GGG 0.583338 7_4:+27969212 Msa1148100:CDS
TAAGCTCTGTCTCTAAGCCA+TGG 0.585113 7_4:+27968206 Msa1148100:exon
GGCCTCCCATAAAACTGTGG+GGG 0.585436 7_4:-27969184 None:intergenic
CATCCATAACTATCGTATAC+GGG 0.586554 7_4:-27969205 None:intergenic
GGTATGCTGCAGCCCAGAGA+AGG 0.588814 7_4:+27968832 Msa1148100:CDS
TTATCGATTATTTGTCAACA+TGG 0.589265 7_4:+27969450 Msa1148100:three_prime_UTR
CGGGCCTCCCATAAAACTGT+GGG 0.590176 7_4:-27969186 None:intergenic
AGACAATATTTGTTGTCAAG+GGG 0.594817 7_4:+27968859 Msa1148100:CDS
ACCGGCTCCACTTCCTTCTG+CGG 0.594977 7_4:+27969057 Msa1148100:CDS
CCATAAGGAACAACCGGCGA+AGG 0.596513 7_4:-27969133 None:intergenic
GTGTGAGGATACATTACGGC+TGG 0.608609 7_4:-27969085 None:intergenic
TGGAGTGGGCCTTGTTACGT+GGG 0.611082 7_4:+27969226 Msa1148100:CDS
AATTTGAAGGGTCCTTGTGG+AGG 0.615633 7_4:+27969297 Msa1148100:exon
GCCTCCCATAAAACTGTGGG+GGG 0.618515 7_4:-27969183 None:intergenic
GACATGTACCATAATTTGAA+GGG 0.619743 7_4:+27969285 Msa1148100:exon
AGCTTGAATATAAAGATAGG+TGG 0.625408 7_4:-27968087 None:intergenic
GACAATATTTGTTGTCAAGG+GGG 0.632032 7_4:+27968860 Msa1148100:CDS
CCGTATACGATAGTTATGGA+TGG 0.632117 7_4:+27969206 Msa1148100:CDS
GGTTGCCATAATGAGGCTCA+AGG 0.635751 7_4:+27968403 Msa1148100:intron
ACTCACGAGGGTATTTGCAA+AGG 0.638434 7_4:-27968469 None:intergenic
GTTTATGGTGCTGGACAAGG+TGG 0.639163 7_4:+27969160 Msa1148100:CDS
TGGTATTGTGACCATAAGAG+TGG 0.648050 7_4:+27968811 Msa1148100:CDS
GGATATGCAAGAATGGACAT+TGG 0.650120 7_4:-27969112 None:intergenic
TATAATCATTCTCCTCCACA+AGG 0.656738 7_4:-27969309 None:intergenic
ATGGACATTGGCGTTGTGTG+AGG 0.663282 7_4:-27969100 None:intergenic
ACGGGCCTCCCATAAAACTG+TGG 0.672573 7_4:-27969187 None:intergenic
GGGCCTCCCATAAAACTGTG+GGG 0.723372 7_4:-27969185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAACAAATTAAGA+AGG - chr7_4:27968699-27968718 None:intergenic 10.0%
!! TAAAATTGTAATATAAACAT+GGG - chr7_4:27969496-27969515 None:intergenic 10.0%
!! ATAAAATTGTAATATAAACA+TGG - chr7_4:27969497-27969516 None:intergenic 10.0%
!! AAAAAATAAACAAATTAAGA+AGG - chr7_4:27968699-27968718 None:intergenic 10.0%
!! TAAAATTGTAATATAAACAT+GGG - chr7_4:27969496-27969515 None:intergenic 10.0%
!! ATAAAATTGTAATATAAACA+TGG - chr7_4:27969497-27969516 None:intergenic 10.0%
!! TCAAATAATATGAATGAAAA+AGG - chr7_4:27968168-27968187 None:intergenic 15.0%
!! AATTCAAGCATATAATTTAA+TGG - chr7_4:27968348-27968367 None:intergenic 15.0%
!! GAAAAATAATAAAATATGAG+AGG - chr7_4:27968515-27968534 None:intergenic 15.0%
!! AAAATCAAGAAACTAAAATT+AGG - chr7_4:27968667-27968686 None:intergenic 15.0%
!!! ATAAAAAGTGTAATATAATG+AGG + chr7_4:27969376-27969395 Msa1148100:three_prime_UTR 15.0%
!! TCAAATAATATGAATGAAAA+AGG - chr7_4:27968168-27968187 None:intergenic 15.0%
!! AATTCAAGCATATAATTTAA+TGG - chr7_4:27968348-27968367 None:intergenic 15.0%
!! GAAAAATAATAAAATATGAG+AGG - chr7_4:27968515-27968534 None:intergenic 15.0%
!! AAAATCAAGAAACTAAAATT+AGG - chr7_4:27968667-27968686 None:intergenic 15.0%
!!! ATAAAAAGTGTAATATAATG+AGG + chr7_4:27969376-27969395 Msa1148100:three_prime_UTR 15.0%
!! ATAAGCTTGAATATAAAGAT+AGG - chr7_4:27968093-27968112 None:intergenic 20.0%
!!! ATTTTTCCTCATACATATTT+TGG + chr7_4:27968528-27968547 Msa1148100:intron 20.0%
!! ATAAGCTTGAATATAAAGAT+AGG - chr7_4:27968093-27968112 None:intergenic 20.0%
!!! ATTTTTCCTCATACATATTT+TGG + chr7_4:27968528-27968547 Msa1148100:intron 20.0%
! TGGTTATTACTAGAACTAAT+TGG - chr7_4:27968328-27968347 None:intergenic 25.0%
!! GGTGGTGTTAATATATTATT+AGG + chr7_4:27968554-27968573 Msa1148100:intron 25.0%
! AACGCAATACTAACAAATTA+AGG - chr7_4:27968728-27968747 None:intergenic 25.0%
! CATTCTTCTCATCATATATT+TGG - chr7_4:27968793-27968812 None:intergenic 25.0%
! CAAATATATGATGAGAAGAA+TGG + chr7_4:27968791-27968810 Msa1148100:CDS 25.0%
!! TTATCGATTATTTGTCAACA+TGG + chr7_4:27969450-27969469 Msa1148100:three_prime_UTR 25.0%
! TGTAATATAAACATGGGATA+TGG - chr7_4:27969490-27969509 None:intergenic 25.0%
! TGGTTATTACTAGAACTAAT+TGG - chr7_4:27968328-27968347 None:intergenic 25.0%
!! GGTGGTGTTAATATATTATT+AGG + chr7_4:27968554-27968573 Msa1148100:intron 25.0%
! AACGCAATACTAACAAATTA+AGG - chr7_4:27968728-27968747 None:intergenic 25.0%
! CATTCTTCTCATCATATATT+TGG - chr7_4:27968793-27968812 None:intergenic 25.0%
! CAAATATATGATGAGAAGAA+TGG + chr7_4:27968791-27968810 Msa1148100:CDS 25.0%
!! TTATCGATTATTTGTCAACA+TGG + chr7_4:27969450-27969469 Msa1148100:three_prime_UTR 25.0%
! TGTAATATAAACATGGGATA+TGG - chr7_4:27969490-27969509 None:intergenic 25.0%
AGCTTGAATATAAAGATAGG+TGG - chr7_4:27968090-27968109 None:intergenic 30.0%
ATGAATGAAAAAGGAGAAAC+TGG - chr7_4:27968159-27968178 None:intergenic 30.0%
! AACTAATTGGCTTAGTTAAG+AGG - chr7_4:27968315-27968334 None:intergenic 30.0%
! TACAGCATTTTCTACATTGA+AGG - chr7_4:27968433-27968452 None:intergenic 30.0%
TATTATTGAAAGACTCACGA+GGG - chr7_4:27968484-27968503 None:intergenic 30.0%
TTATTATTGAAAGACTCACG+AGG - chr7_4:27968485-27968504 None:intergenic 30.0%
!!! TCCTCATACATATTTTGGTA+TGG + chr7_4:27968533-27968552 Msa1148100:intron 30.0%
ACCATACCAAAATATGTATG+AGG - chr7_4:27968537-27968556 None:intergenic 30.0%
!!! TCATACATATTTTGGTATGG+TGG + chr7_4:27968536-27968555 Msa1148100:intron 30.0%
!! AGAGACAATATTTGTTGTCA+AGG + chr7_4:27968857-27968876 Msa1148100:CDS 30.0%
!! GAGACAATATTTGTTGTCAA+GGG + chr7_4:27968858-27968877 Msa1148100:CDS 30.0%
!! AGACAATATTTGTTGTCAAG+GGG + chr7_4:27968859-27968878 Msa1148100:CDS 30.0%
!! AACTATTTCTATGCTCTTGA+TGG - chr7_4:27968891-27968910 None:intergenic 30.0%
GACATGTACCATAATTTGAA+GGG + chr7_4:27969285-27969304 Msa1148100:exon 30.0%
AGCTTGAATATAAAGATAGG+TGG - chr7_4:27968090-27968109 None:intergenic 30.0%
ATGAATGAAAAAGGAGAAAC+TGG - chr7_4:27968159-27968178 None:intergenic 30.0%
! AACTAATTGGCTTAGTTAAG+AGG - chr7_4:27968315-27968334 None:intergenic 30.0%
! TACAGCATTTTCTACATTGA+AGG - chr7_4:27968433-27968452 None:intergenic 30.0%
TATTATTGAAAGACTCACGA+GGG - chr7_4:27968484-27968503 None:intergenic 30.0%
TTATTATTGAAAGACTCACG+AGG - chr7_4:27968485-27968504 None:intergenic 30.0%
!!! TCCTCATACATATTTTGGTA+TGG + chr7_4:27968533-27968552 Msa1148100:intron 30.0%
ACCATACCAAAATATGTATG+AGG - chr7_4:27968537-27968556 None:intergenic 30.0%
!!! TCATACATATTTTGGTATGG+TGG + chr7_4:27968536-27968555 Msa1148100:intron 30.0%
!! AGAGACAATATTTGTTGTCA+AGG + chr7_4:27968857-27968876 Msa1148100:CDS 30.0%
!! GAGACAATATTTGTTGTCAA+GGG + chr7_4:27968858-27968877 Msa1148100:CDS 30.0%
!! AGACAATATTTGTTGTCAAG+GGG + chr7_4:27968859-27968878 Msa1148100:CDS 30.0%
!! AACTATTTCTATGCTCTTGA+TGG - chr7_4:27968891-27968910 None:intergenic 30.0%
GACATGTACCATAATTTGAA+GGG + chr7_4:27969285-27969304 Msa1148100:exon 30.0%
! ATTGGCTTAGTTAAGAGGAA+TGG - chr7_4:27968310-27968329 None:intergenic 35.0%
TACTTTGCTTGAACTTATGC+AGG + chr7_4:27968382-27968401 Msa1148100:intron 35.0%
TATTGTCTCTTACCTTCTCT+GGG - chr7_4:27968847-27968866 None:intergenic 35.0%
ATATTGTCTCTTACCTTCTC+TGG - chr7_4:27968848-27968867 None:intergenic 35.0%
!! GACAATATTTGTTGTCAAGG+GGG + chr7_4:27968860-27968879 Msa1148100:CDS 35.0%
!!! GGCTTTTTTTCTTGCTCTTT+GGG - chr7_4:27968947-27968966 None:intergenic 35.0%
CATCCATAACTATCGTATAC+GGG - chr7_4:27969208-27969227 None:intergenic 35.0%
CCATCCATAACTATCGTATA+CGG - chr7_4:27969209-27969228 None:intergenic 35.0%
CGACATGTACCATAATTTGA+AGG + chr7_4:27969284-27969303 Msa1148100:CDS 35.0%
TATAATCATTCTCCTCCACA+AGG - chr7_4:27969312-27969331 None:intergenic 35.0%
GTGGAGGAGAATGATTATAA+AGG + chr7_4:27969313-27969332 Msa1148100:three_prime_UTR 35.0%
TTCAAAACTCACCAAACTCA+AGG + chr7_4:27969404-27969423 Msa1148100:three_prime_UTR 35.0%
CTTTGATGTTTCCTTGAGTT+TGG - chr7_4:27969418-27969437 None:intergenic 35.0%
! ATTGGCTTAGTTAAGAGGAA+TGG - chr7_4:27968310-27968329 None:intergenic 35.0%
TACTTTGCTTGAACTTATGC+AGG + chr7_4:27968382-27968401 Msa1148100:intron 35.0%
TATTGTCTCTTACCTTCTCT+GGG - chr7_4:27968847-27968866 None:intergenic 35.0%
ATATTGTCTCTTACCTTCTC+TGG - chr7_4:27968848-27968867 None:intergenic 35.0%
!! GACAATATTTGTTGTCAAGG+GGG + chr7_4:27968860-27968879 Msa1148100:CDS 35.0%
!!! GGCTTTTTTTCTTGCTCTTT+GGG - chr7_4:27968947-27968966 None:intergenic 35.0%
CATCCATAACTATCGTATAC+GGG - chr7_4:27969208-27969227 None:intergenic 35.0%
CCATCCATAACTATCGTATA+CGG - chr7_4:27969209-27969228 None:intergenic 35.0%
CGACATGTACCATAATTTGA+AGG + chr7_4:27969284-27969303 Msa1148100:CDS 35.0%
TATAATCATTCTCCTCCACA+AGG - chr7_4:27969312-27969331 None:intergenic 35.0%
GTGGAGGAGAATGATTATAA+AGG + chr7_4:27969313-27969332 Msa1148100:three_prime_UTR 35.0%
TTCAAAACTCACCAAACTCA+AGG + chr7_4:27969404-27969423 Msa1148100:three_prime_UTR 35.0%
CTTTGATGTTTCCTTGAGTT+TGG - chr7_4:27969418-27969437 None:intergenic 35.0%
AGAGACAGAGCTTAGATCTA+AGG - chr7_4:27968200-27968219 None:intergenic 40.0%
! GTTACTAACCTTTTGCTCCA+TGG - chr7_4:27968226-27968245 None:intergenic 40.0%
TTATGCAGGTTGCCATAATG+AGG + chr7_4:27968396-27968415 Msa1148100:intron 40.0%
TGGTATTGTGACCATAAGAG+TGG + chr7_4:27968811-27968830 Msa1148100:CDS 40.0%
!! AATATTTGTTGTCAAGGGGG+TGG + chr7_4:27968863-27968882 Msa1148100:CDS 40.0%
!!! GGGCTTTTTTTCTTGCTCTT+TGG - chr7_4:27968948-27968967 None:intergenic 40.0%
!! GACTTGGATTTTGTTTAGGC+GGG - chr7_4:27969003-27969022 None:intergenic 40.0%
!! GGACTTGGATTTTGTTTAGG+CGG - chr7_4:27969004-27969023 None:intergenic 40.0%
!! GCTGGACTTGGATTTTGTTT+AGG - chr7_4:27969007-27969026 None:intergenic 40.0%
CGTTGTGTGAGGATACATTA+CGG - chr7_4:27969092-27969111 None:intergenic 40.0%
GGATATGCAAGAATGGACAT+TGG - chr7_4:27969115-27969134 None:intergenic 40.0%
GTTCCTTATGGGCATGTTTA+TGG + chr7_4:27969145-27969164 Msa1148100:CDS 40.0%
CCGTATACGATAGTTATGGA+TGG + chr7_4:27969206-27969225 Msa1148100:CDS 40.0%
TACGATAGTTATGGATGGAG+TGG + chr7_4:27969211-27969230 Msa1148100:CDS 40.0%
ACGATAGTTATGGATGGAGT+GGG + chr7_4:27969212-27969231 Msa1148100:CDS 40.0%
CACAAGGACCCTTCAAATTA+TGG - chr7_4:27969296-27969315 None:intergenic 40.0%
CATAATTTGAAGGGTCCTTG+TGG + chr7_4:27969294-27969313 Msa1148100:exon 40.0%
AGAGACAGAGCTTAGATCTA+AGG - chr7_4:27968200-27968219 None:intergenic 40.0%
! GTTACTAACCTTTTGCTCCA+TGG - chr7_4:27968226-27968245 None:intergenic 40.0%
TTATGCAGGTTGCCATAATG+AGG + chr7_4:27968396-27968415 Msa1148100:intron 40.0%
TGGTATTGTGACCATAAGAG+TGG + chr7_4:27968811-27968830 Msa1148100:CDS 40.0%
!! AATATTTGTTGTCAAGGGGG+TGG + chr7_4:27968863-27968882 Msa1148100:CDS 40.0%
!!! GGGCTTTTTTTCTTGCTCTT+TGG - chr7_4:27968948-27968967 None:intergenic 40.0%
!! GACTTGGATTTTGTTTAGGC+GGG - chr7_4:27969003-27969022 None:intergenic 40.0%
!! GGACTTGGATTTTGTTTAGG+CGG - chr7_4:27969004-27969023 None:intergenic 40.0%
!! GCTGGACTTGGATTTTGTTT+AGG - chr7_4:27969007-27969026 None:intergenic 40.0%
CGTTGTGTGAGGATACATTA+CGG - chr7_4:27969092-27969111 None:intergenic 40.0%
GGATATGCAAGAATGGACAT+TGG - chr7_4:27969115-27969134 None:intergenic 40.0%
GTTCCTTATGGGCATGTTTA+TGG + chr7_4:27969145-27969164 Msa1148100:CDS 40.0%
CCGTATACGATAGTTATGGA+TGG + chr7_4:27969206-27969225 Msa1148100:CDS 40.0%
TACGATAGTTATGGATGGAG+TGG + chr7_4:27969211-27969230 Msa1148100:CDS 40.0%
ACGATAGTTATGGATGGAGT+GGG + chr7_4:27969212-27969231 Msa1148100:CDS 40.0%
CACAAGGACCCTTCAAATTA+TGG - chr7_4:27969296-27969315 None:intergenic 40.0%
CATAATTTGAAGGGTCCTTG+TGG + chr7_4:27969294-27969313 Msa1148100:exon 40.0%
TAAGCTCTGTCTCTAAGCCA+TGG + chr7_4:27968206-27968225 Msa1148100:exon 45.0%
TCTCTAAGCCATGGAGCAAA+AGG + chr7_4:27968215-27968234 Msa1148100:exon 45.0%
GTCAACCTTGAGCCTCATTA+TGG - chr7_4:27968411-27968430 None:intergenic 45.0%
!! ACTCACGAGGGTATTTGCAA+AGG - chr7_4:27968472-27968491 None:intergenic 45.0%
AGAGCAAGAAAAAAAGCCCG+TGG + chr7_4:27968949-27968968 Msa1148100:CDS 45.0%
CATTCTTGCATATCCTTCGC+CGG + chr7_4:27969120-27969139 Msa1148100:CDS 45.0%
ACATGCCCATAAGGAACAAC+CGG - chr7_4:27969142-27969161 None:intergenic 45.0%
GCACCATAAACATGCCCATA+AGG - chr7_4:27969151-27969170 None:intergenic 45.0%
TATGGGCATGTTTATGGTGC+TGG + chr7_4:27969151-27969170 Msa1148100:CDS 45.0%
! CATGTTTATGGTGCTGGACA+AGG + chr7_4:27969157-27969176 Msa1148100:CDS 45.0%
AGGCCCGTATACGATAGTTA+TGG + chr7_4:27969202-27969221 Msa1148100:CDS 45.0%
AATTTGAAGGGTCCTTGTGG+AGG + chr7_4:27969297-27969316 Msa1148100:exon 45.0%
TAAGCTCTGTCTCTAAGCCA+TGG + chr7_4:27968206-27968225 Msa1148100:exon 45.0%
TCTCTAAGCCATGGAGCAAA+AGG + chr7_4:27968215-27968234 Msa1148100:exon 45.0%
GTCAACCTTGAGCCTCATTA+TGG - chr7_4:27968411-27968430 None:intergenic 45.0%
!! ACTCACGAGGGTATTTGCAA+AGG - chr7_4:27968472-27968491 None:intergenic 45.0%
AGAGCAAGAAAAAAAGCCCG+TGG + chr7_4:27968949-27968968 Msa1148100:CDS 45.0%
CATTCTTGCATATCCTTCGC+CGG + chr7_4:27969120-27969139 Msa1148100:CDS 45.0%
ACATGCCCATAAGGAACAAC+CGG - chr7_4:27969142-27969161 None:intergenic 45.0%
GCACCATAAACATGCCCATA+AGG - chr7_4:27969151-27969170 None:intergenic 45.0%
TATGGGCATGTTTATGGTGC+TGG + chr7_4:27969151-27969170 Msa1148100:CDS 45.0%
! CATGTTTATGGTGCTGGACA+AGG + chr7_4:27969157-27969176 Msa1148100:CDS 45.0%
AGGCCCGTATACGATAGTTA+TGG + chr7_4:27969202-27969221 Msa1148100:CDS 45.0%
AATTTGAAGGGTCCTTGTGG+AGG + chr7_4:27969297-27969316 Msa1148100:exon 45.0%
!! AATACAAAATTTATATTTAA+TGG - chr7_4:27968589-27968608 None:intergenic 5.0%
!! AATACAAAATTTATATTTAA+TGG - chr7_4:27968589-27968608 None:intergenic 5.0%
GGTTGCCATAATGAGGCTCA+AGG + chr7_4:27968403-27968422 Msa1148100:intron 50.0%
GCTGCAGCATACCACTCTTA+TGG - chr7_4:27968825-27968844 None:intergenic 50.0%
TCTTGCTCTTTGGGCTTCTC+CGG - chr7_4:27968938-27968957 None:intergenic 50.0%
! TTGTGCAATCGGCTTTGCCT+CGG - chr7_4:27968975-27968994 None:intergenic 50.0%
GTGTGAGGATACATTACGGC+TGG - chr7_4:27969088-27969107 None:intergenic 50.0%
ATGGACATTGGCGTTGTGTG+AGG - chr7_4:27969103-27969122 None:intergenic 50.0%
CGGCGAAGGATATGCAAGAA+TGG - chr7_4:27969122-27969141 None:intergenic 50.0%
! CTTCGCCGGTTGTTCCTTAT+GGG + chr7_4:27969134-27969153 Msa1148100:CDS 50.0%
! GTTTATGGTGCTGGACAAGG+TGG + chr7_4:27969160-27969179 Msa1148100:CDS 50.0%
! TGGTGATGACCCACGTAACA+AGG - chr7_4:27969238-27969257 None:intergenic 50.0%
GGTTGCCATAATGAGGCTCA+AGG + chr7_4:27968403-27968422 Msa1148100:intron 50.0%
GCTGCAGCATACCACTCTTA+TGG - chr7_4:27968825-27968844 None:intergenic 50.0%
TCTTGCTCTTTGGGCTTCTC+CGG - chr7_4:27968938-27968957 None:intergenic 50.0%
! TTGTGCAATCGGCTTTGCCT+CGG - chr7_4:27968975-27968994 None:intergenic 50.0%
GTGTGAGGATACATTACGGC+TGG - chr7_4:27969088-27969107 None:intergenic 50.0%
ATGGACATTGGCGTTGTGTG+AGG - chr7_4:27969103-27969122 None:intergenic 50.0%
CGGCGAAGGATATGCAAGAA+TGG - chr7_4:27969122-27969141 None:intergenic 50.0%
! CTTCGCCGGTTGTTCCTTAT+GGG + chr7_4:27969134-27969153 Msa1148100:CDS 50.0%
! GTTTATGGTGCTGGACAAGG+TGG + chr7_4:27969160-27969179 Msa1148100:CDS 50.0%
! TGGTGATGACCCACGTAACA+AGG - chr7_4:27969238-27969257 None:intergenic 50.0%
ACCAAAGCCTAAGCCAGCAC+CGG + chr7_4:27968916-27968935 Msa1148100:CDS 55.0%
AGAAAAAAAGCCCGTGGCCG+AGG + chr7_4:27968955-27968974 Msa1148100:CDS 55.0%
GCAAAGCCGATTGCACAACC+TGG + chr7_4:27968977-27968996 Msa1148100:CDS 55.0%
!! GGATTTTGTTTAGGCGGGCC+AGG - chr7_4:27968998-27969017 None:intergenic 55.0%
CCATAAGGAACAACCGGCGA+AGG - chr7_4:27969136-27969155 None:intergenic 55.0%
! CCTTCGCCGGTTGTTCCTTA+TGG + chr7_4:27969133-27969152 Msa1148100:CDS 55.0%
!! GTGGCCCCCCACAGTTTTAT+GGG + chr7_4:27969179-27969198 Msa1148100:CDS 55.0%
GCCTCCCATAAAACTGTGGG+GGG - chr7_4:27969186-27969205 None:intergenic 55.0%
GGCCTCCCATAAAACTGTGG+GGG - chr7_4:27969187-27969206 None:intergenic 55.0%
GGGCCTCCCATAAAACTGTG+GGG - chr7_4:27969188-27969207 None:intergenic 55.0%
CGGGCCTCCCATAAAACTGT+GGG - chr7_4:27969189-27969208 None:intergenic 55.0%
ACGGGCCTCCCATAAAACTG+TGG - chr7_4:27969190-27969209 None:intergenic 55.0%
!! ATGGAGTGGGCCTTGTTACG+TGG + chr7_4:27969225-27969244 Msa1148100:CDS 55.0%
!! TGGAGTGGGCCTTGTTACGT+GGG + chr7_4:27969226-27969245 Msa1148100:CDS 55.0%
TGGGTCATCACCACGATTGC+TGG + chr7_4:27969245-27969264 Msa1148100:CDS 55.0%
ACCAAAGCCTAAGCCAGCAC+CGG + chr7_4:27968916-27968935 Msa1148100:CDS 55.0%
AGAAAAAAAGCCCGTGGCCG+AGG + chr7_4:27968955-27968974 Msa1148100:CDS 55.0%
GCAAAGCCGATTGCACAACC+TGG + chr7_4:27968977-27968996 Msa1148100:CDS 55.0%
!! GGATTTTGTTTAGGCGGGCC+AGG - chr7_4:27968998-27969017 None:intergenic 55.0%
CCATAAGGAACAACCGGCGA+AGG - chr7_4:27969136-27969155 None:intergenic 55.0%
! CCTTCGCCGGTTGTTCCTTA+TGG + chr7_4:27969133-27969152 Msa1148100:CDS 55.0%
!! GTGGCCCCCCACAGTTTTAT+GGG + chr7_4:27969179-27969198 Msa1148100:CDS 55.0%
GCCTCCCATAAAACTGTGGG+GGG - chr7_4:27969186-27969205 None:intergenic 55.0%
GGCCTCCCATAAAACTGTGG+GGG - chr7_4:27969187-27969206 None:intergenic 55.0%
GGGCCTCCCATAAAACTGTG+GGG - chr7_4:27969188-27969207 None:intergenic 55.0%
CGGGCCTCCCATAAAACTGT+GGG - chr7_4:27969189-27969208 None:intergenic 55.0%
ACGGGCCTCCCATAAAACTG+TGG - chr7_4:27969190-27969209 None:intergenic 55.0%
!! ATGGAGTGGGCCTTGTTACG+TGG + chr7_4:27969225-27969244 Msa1148100:CDS 55.0%
!! TGGAGTGGGCCTTGTTACGT+GGG + chr7_4:27969226-27969245 Msa1148100:CDS 55.0%
TGGGTCATCACCACGATTGC+TGG + chr7_4:27969245-27969264 Msa1148100:CDS 55.0%
GGTATGCTGCAGCCCAGAGA+AGG + chr7_4:27968832-27968851 Msa1148100:CDS 60.0%
!! GGTGCTGGCTTAGGCTTTGG+TGG - chr7_4:27968917-27968936 None:intergenic 60.0%
!! TCCGGTGCTGGCTTAGGCTT+TGG - chr7_4:27968920-27968939 None:intergenic 60.0%
TCTTTGGGCTTCTCCGGTGC+TGG - chr7_4:27968932-27968951 None:intergenic 60.0%
! AATCGGCTTTGCCTCGGCCA+CGG - chr7_4:27968969-27968988 None:intergenic 60.0%
TCCAAGTCCAGCTCCAGCTC+CGG + chr7_4:27969015-27969034 Msa1148100:CDS 60.0%
! ACCGGCTCCACTTCCTTCTG+CGG + chr7_4:27969057-27969076 Msa1148100:CDS 60.0%
! GGTGGCCCCCCACAGTTTTA+TGG + chr7_4:27969178-27969197 Msa1148100:CDS 60.0%
!! GCCCCCCACAGTTTTATGGG+AGG + chr7_4:27969182-27969201 Msa1148100:CDS 60.0%
CTTCTTCGCGCCAGCAATCG+TGG - chr7_4:27969258-27969277 None:intergenic 60.0%
CGATTGCTGGCGCGAAGAAG+AGG + chr7_4:27969258-27969277 Msa1148100:CDS 60.0%
GGTATGCTGCAGCCCAGAGA+AGG + chr7_4:27968832-27968851 Msa1148100:CDS 60.0%
!! GGTGCTGGCTTAGGCTTTGG+TGG - chr7_4:27968917-27968936 None:intergenic 60.0%
!! TCCGGTGCTGGCTTAGGCTT+TGG - chr7_4:27968920-27968939 None:intergenic 60.0%
TCTTTGGGCTTCTCCGGTGC+TGG - chr7_4:27968932-27968951 None:intergenic 60.0%
! AATCGGCTTTGCCTCGGCCA+CGG - chr7_4:27968969-27968988 None:intergenic 60.0%
TCCAAGTCCAGCTCCAGCTC+CGG + chr7_4:27969015-27969034 Msa1148100:CDS 60.0%
! ACCGGCTCCACTTCCTTCTG+CGG + chr7_4:27969057-27969076 Msa1148100:CDS 60.0%
! GGTGGCCCCCCACAGTTTTA+TGG + chr7_4:27969178-27969197 Msa1148100:CDS 60.0%
!! GCCCCCCACAGTTTTATGGG+AGG + chr7_4:27969182-27969201 Msa1148100:CDS 60.0%
CTTCTTCGCGCCAGCAATCG+TGG - chr7_4:27969258-27969277 None:intergenic 60.0%
CGATTGCTGGCGCGAAGAAG+AGG + chr7_4:27969258-27969277 Msa1148100:CDS 60.0%
!! GGCTTCTCCGGTGCTGGCTT+AGG - chr7_4:27968926-27968945 None:intergenic 65.0%
! ATCGGCTTTGCCTCGGCCAC+GGG - chr7_4:27968968-27968987 None:intergenic 65.0%
GGCGGGCCAGGTTGTGCAAT+CGG - chr7_4:27968986-27969005 None:intergenic 65.0%
GCCGCAGAAGGAAGTGGAGC+CGG - chr7_4:27969061-27969080 None:intergenic 65.0%
GGTGCAGCCGCAGAAGGAAG+TGG - chr7_4:27969067-27969086 None:intergenic 65.0%
!! GGCTTCTCCGGTGCTGGCTT+AGG - chr7_4:27968926-27968945 None:intergenic 65.0%
! ATCGGCTTTGCCTCGGCCAC+GGG - chr7_4:27968968-27968987 None:intergenic 65.0%
GGCGGGCCAGGTTGTGCAAT+CGG - chr7_4:27968986-27969005 None:intergenic 65.0%
GCCGCAGAAGGAAGTGGAGC+CGG - chr7_4:27969061-27969080 None:intergenic 65.0%
GGTGCAGCCGCAGAAGGAAG+TGG - chr7_4:27969067-27969086 None:intergenic 65.0%
GCCGGAGCTGGAGCTGGACT+TGG - chr7_4:27969019-27969038 None:intergenic 70.0%
TCCAGCTCCGGCACCAGCTC+CGG + chr7_4:27969027-27969046 Msa1148100:CDS 70.0%
ACCAGCTCCGGCTCAGGCAC+CGG + chr7_4:27969039-27969058 Msa1148100:CDS 70.0%
AGTGGAGCCGGTGCCTGAGC+CGG - chr7_4:27969049-27969068 None:intergenic 70.0%
ACGGCTGGTGCAGCCGCAGA+AGG - chr7_4:27969073-27969092 None:intergenic 70.0%
GCCGGAGCTGGAGCTGGACT+TGG - chr7_4:27969019-27969038 None:intergenic 70.0%
TCCAGCTCCGGCACCAGCTC+CGG + chr7_4:27969027-27969046 Msa1148100:CDS 70.0%
ACCAGCTCCGGCTCAGGCAC+CGG + chr7_4:27969039-27969058 Msa1148100:CDS 70.0%
AGTGGAGCCGGTGCCTGAGC+CGG - chr7_4:27969049-27969068 None:intergenic 70.0%
ACGGCTGGTGCAGCCGCAGA+AGG - chr7_4:27969073-27969092 None:intergenic 70.0%
! GCTGGTGCCGGAGCTGGAGC+TGG - chr7_4:27969025-27969044 None:intergenic 75.0%
TCCGGCACCAGCTCCGGCTC+AGG + chr7_4:27969033-27969052 Msa1148100:CDS 75.0%
GCCTGAGCCGGAGCTGGTGC+CGG - chr7_4:27969037-27969056 None:intergenic 75.0%
! GCTGGTGCCGGAGCTGGAGC+TGG - chr7_4:27969025-27969044 None:intergenic 75.0%
TCCGGCACCAGCTCCGGCTC+AGG + chr7_4:27969033-27969052 Msa1148100:CDS 75.0%
GCCTGAGCCGGAGCTGGTGC+CGG - chr7_4:27969037-27969056 None:intergenic 75.0%
!! GCCGGAGCTGGTGCCGGAGC+TGG - chr7_4:27969031-27969050 None:intergenic 80.0%
! GCCGGTGCCTGAGCCGGAGC+TGG - chr7_4:27969043-27969062 None:intergenic 80.0%
!! GCCGGAGCTGGTGCCGGAGC+TGG - chr7_4:27969031-27969050 None:intergenic 80.0%
! GCCGGTGCCTGAGCCGGAGC+TGG - chr7_4:27969043-27969062 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27968055 27969609 27968055 ID=Msa1148100;Name=Msa1148100
chr7_4 mRNA 27968055 27969609 27968055 ID=Msa1148100-mRNA-1;Parent=Msa1148100;Name=Msa1148100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170|1|1|1|0|0|3|306|205
chr7_4 exon 27968055 27968236 27968055 ID=Msa1148100-mRNA-1:exon:6808;Parent=Msa1148100-mRNA-1
chr7_4 exon 27968404 27968485 27968404 ID=Msa1148100-mRNA-1:exon:6809;Parent=Msa1148100-mRNA-1
chr7_4 exon 27968780 27969609 27968780 ID=Msa1148100-mRNA-1:exon:6810;Parent=Msa1148100-mRNA-1
chr7_4 five_prime_UTR 27968055 27968224 27968055 ID=Msa1148100-mRNA-1:five_prime_utr;Parent=Msa1148100-mRNA-1
chr7_4 CDS 27968225 27968236 27968225 ID=Msa1148100-mRNA-1:cds;Parent=Msa1148100-mRNA-1
chr7_4 CDS 27968404 27968485 27968404 ID=Msa1148100-mRNA-1:cds;Parent=Msa1148100-mRNA-1
chr7_4 CDS 27968780 27969303 27968780 ID=Msa1148100-mRNA-1:cds;Parent=Msa1148100-mRNA-1
chr7_4 three_prime_UTR 27969304 27969609 27969304 ID=Msa1148100-mRNA-1:three_prime_utr;Parent=Msa1148100-mRNA-1
Gene Sequence

>Msa1148100

ATGGAGCAAAAGGTTGCCATAATGAGGCTCAAGGTTGACCTTCAATGTAGAAAATGCTGTAAGAAAGTCAAGAAGATCCTTTGCAAATACCCTCAAATTCGAGACCAAATATATGATGAGAAGAATGGTATTGTGACCATAAGAGTGGTATGCTGCAGCCCAGAGAAGGTAAGAGACAATATTTGTTGTCAAGGGGGTGGTACCATCAAGAGCATAGAAATAGTTGAACCACCAAAGCCTAAGCCAGCACCGGAGAAGCCCAAAGAGCAAGAAAAAAAGCCCGTGGCCGAGGCAAAGCCGATTGCACAACCTGGCCCGCCTAAACAAAATCCAAGTCCAGCTCCAGCTCCGGCACCAGCTCCGGCTCAGGCACCGGCTCCACTTCCTTCTGCGGCTGCACCAGCCGTAATGTATCCTCACACAACGCCAATGTCCATTCTTGCATATCCTTCGCCGGTTGTTCCTTATGGGCATGTTTATGGTGCTGGACAAGGTGGCCCCCCACAGTTTTATGGGAGGCCCGTATACGATAGTTATGGATGGAGTGGGCCTTGTTACGTGGGTCATCACCACGATTGCTGGCGCGAAGAAGAGGCGTCGACATGTACCATAATTTGA

Protein sequence

>Msa1148100

MEQKVAIMRLKVDLQCRKCCKKVKKILCKYPQIRDQIYDEKNGIVTIRVVCCSPEKVRDNICCQGGGTIKSIEIVEPPKPKPAPEKPKEQEKKPVAEAKPIAQPGPPKQNPSPAPAPAPAPAQAPAPLPSAAAPAVMYPHTTPMSILAYPSPVVPYGHVYGAGQGGPPQFYGRPVYDSYGWSGPCYVGHHHDCWREEEASTCTII*