AlfalfaGEDB | Msa0428280

M. sativa cultivar zhongmu-4 / Msa0428280

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428280	XP_003602738.2	94.144	222	13	0	1	222	1	222	1.25e-153	435

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428280	sp\|Q67YC9\|Y4141_ARATH	57.005	207	78	5	17	220	7	205	5.64e-78	236

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428280	G7J2S4	94.144	222	13	0	1	222	1	222	5.96e-154	435

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001420	Msa0428280	0.818865	1.568514e-52	-8.615850e-47
Msa0001510	Msa0428280	0.887887	9.606666e-73	-8.615850e-47
Msa0001540	Msa0428280	0.848019	8.000620e-60	-8.615850e-47
Msa0002060	Msa0428280	0.826147	3.181344e-54	-8.615850e-47
Msa0002110	Msa0428280	0.837133	6.222539e-57	-8.615850e-47
Msa0002690	Msa0428280	0.879418	1.266592e-69	-8.615850e-47
Msa0002700	Msa0428280	0.863312	2.724022e-64	-8.615850e-47
Msa0003340	Msa0428280	0.868417	6.630608e-66	-8.615850e-47
Msa0004180	Msa0428280	0.908718	1.257945e-81	-8.615850e-47
Msa0005190	Msa0428280	0.816807	4.571770e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428280	MtrunA17_Chr3g0131551	94.144	222	13	0	1	222	1	222	1.15e-157	435
Msa0428280	MtrunA17_Chr3g0131541	77.626	219	39	5	7	222	1	212	4.59e-121	342
Msa0428280	MtrunA17_Chr8g0385631	65.263	190	63	2	7	196	1	187	2.80e-85	252
Msa0428280	MtrunA17_Chr8g0385601	64.583	192	63	4	7	196	1	189	7.03e-84	248
Msa0428280	MtrunA17_Chr8g0385611	55.975	159	68	2	7	165	1	157	1.73e-57	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428280	AT3G23760.1	61.828	186	60	4	18	196	9	190	4.99e-80	238
Msa0428280	AT4G14100.1	57.005	207	78	5	17	220	7	205	5.74e-79	236

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Find 58 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCCACGAACAGTAG+TGG	0.582297	3_2:-79116875	None:intergenic
AACTGCTCCGGCCAAACAGC+CGG	0.482218	3_2:-79116047	None:intergenic
AAGGTCGTCCAGTTTCCTGT+AGG	0.614277	3_2:+79116254	Msa0428280:CDS
AAGTGGACTTATGGTACGAC+TGG	0.577314	3_2:+79116111	Msa0428280:CDS
AATAAGAGAAACACTCAAAG+TGG	0.535251	3_2:-79115909	None:intergenic
ACCATAAGTCCACTTTCTGC+AGG	0.523892	3_2:-79116103	None:intergenic
ACCTTGCAATGGCTGTCTGA+GGG	0.591070	3_2:-79116236	None:intergenic
ACTACTGTTCGTGGGGATTT+TGG	0.157790	3_2:+79116877	Msa0428280:CDS
AGAATCCACTACTGTTCGTG+GGG	0.663660	3_2:+79116870	Msa0428280:CDS
AGATAGTTGTTCTATTGCAG+AGG	0.619269	3_2:-79115961	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGAGAAACACTCAAAG+TGG	-	chr3_2:79115912-79115931	None:intergenic	30.0%
GCTCTTGTTCATAAACATTA+AGG	-	chr3_2:79116078-79116097	None:intergenic	30.0%
CTCTCTTATATTATCACTCT+TGG	+	chr3_2:79116441-79116460	Msa0428280:intron	30.0%
GTGATAATTTGAATAGATGG+AGG	+	chr3_2:79116745-79116764	Msa0428280:intron	30.0%
AATAAGAGAAACACTCAAAG+TGG	-	chr3_2:79115912-79115931	None:intergenic	30.0%
GCTCTTGTTCATAAACATTA+AGG	-	chr3_2:79116078-79116097	None:intergenic	30.0%
CTCTCTTATATTATCACTCT+TGG	+	chr3_2:79116441-79116460	Msa0428280:intron	30.0%
GTGATAATTTGAATAGATGG+AGG	+	chr3_2:79116745-79116764	Msa0428280:intron	30.0%
AGATAGTTGTTCTATTGCAG+AGG	-	chr3_2:79115964-79115983	None:intergenic	35.0%
CTGCAATAGAACAACTATCT+AGG	+	chr3_2:79115964-79115983	Msa0428280:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	79115906	79116939	79115906	ID=Msa0428280;Name=Msa0428280
chr3_2	mRNA	79115906	79116939	79115906	ID=Msa0428280-mRNA-1;Parent=Msa0428280;Name=Msa0428280-mRNA-1;_AED=0.33;_eAED=0.34;_QI=33\|1\|0.5\|1\|1\|1\|2\|0\|222
chr3_2	exon	79115906	79116428	79115906	ID=Msa0428280-mRNA-1:exon:21251;Parent=Msa0428280-mRNA-1
chr3_2	exon	79116761	79116939	79116761	ID=Msa0428280-mRNA-1:exon:21252;Parent=Msa0428280-mRNA-1
chr3_2	five_prime_UTR	79115906	79115938	79115906	ID=Msa0428280-mRNA-1:five_prime_utr;Parent=Msa0428280-mRNA-1
chr3_2	CDS	79115939	79116428	79115939	ID=Msa0428280-mRNA-1:cds;Parent=Msa0428280-mRNA-1
chr3_2	CDS	79116761	79116939	79116761	ID=Msa0428280-mRNA-1:cds;Parent=Msa0428280-mRNA-1

Gene Sequence

>Msa0428280

ATGAAACTTAGAGCAGCCATGGCCTCTGCAATAGAACAACTATCTAGGATATTCCTATATGTCATTCTCTTCTCTCTCTCGGCTTCATATTCGATGGCTGAGCCAATTCCGGCTGTTTGGCCGGAGCAGTTTCATGCCTTAATGTTTATGAACAAGAGCGGAGTCCTGCAGAAAGTGGACTTATGGTACGACTGGCCTAACGGTCGAAACTTCAACATCATCCAAAATCAACTCAATGCTGTCGTCGTTTACGACCTCGAATGGACCAACGGTACCTCCTTCATCTACACTCTCCATCCCTCAGACAGCCATTGCAAGGTCGTCCAGTTTCCTGTAGGTATTCTCCGTCCTAATTTTCTTGAGGGCGCTACGTATTTAGGTCAAGAAGATGTTGATAATTTCCTTTGTAATGTTTGGACGAAAGTTGATTTCATTGTGTACTATGAAGACGTTCTCACTCGTAGACCTGTTAAGTGGTTCTTCTACTCAGATGGAGGATATACTGCTCATGTGATGGCATTTGAGGTTGGAGCAGTGCTTGAGGATCCGCATTGGCAGGCTCCTATATACTGCTTCAATCAGACTGAGATAATAATAATAGAATCCACTACTGTTCGTGGGGATTTTGGGAGTTTGATGAGAGGCAAAGTTGATGCTGCTGCTGCATAA

Protein sequence

>Msa0428280

MKLRAAMASAIEQLSRIFLYVILFSLSASYSMAEPIPAVWPEQFHALMFMNKSGVLQKVDLWYDWPNGRNFNIIQNQLNAVVVYDLEWTNGTSFIYTLHPSDSHCKVVQFPVGILRPNFLEGATYLGQEDVDNFLCNVWTKVDFIVYYEDVLTRRPVKWFFYSDGGYTAHVMAFEVGAVLEDPHWQAPIYCFNQTEIIIIESTTVRGDFGSLMRGKVDAAAA*