AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428280 MtrunA17_Chr3g0131551 94.144 222 13 0 1 222 1 222 1.15e-157 435
Msa0428280 MtrunA17_Chr3g0131541 77.626 219 39 5 7 222 1 212 4.59e-121 342
Msa0428280 MtrunA17_Chr8g0385631 65.263 190 63 2 7 196 1 187 2.80e-85 252
Msa0428280 MtrunA17_Chr8g0385601 64.583 192 63 4 7 196 1 189 7.03e-84 248
Msa0428280 MtrunA17_Chr8g0385611 55.975 159 68 2 7 165 1 157 1.73e-57 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428280 AT3G23760.1 61.828 186 60 4 18 196 9 190 4.99e-80 238
Msa0428280 AT4G14100.1 57.005 207 78 5 17 220 7 205 5.74e-79 236

Find 58 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTGTTCGTGGGGATTT+TGG 0.157790 3_2:+79116877 Msa0428280:CDS
CGACAGCATTGAGTTGATTT+TGG 0.167038 3_2:-79116160 None:intergenic
GCTCTTGTTCATAAACATTA+AGG 0.279361 3_2:-79116075 None:intergenic
ATAATTTCCTTTGTAATGTT+TGG 0.290309 3_2:+79116333 Msa0428280:CDS
CTTGAGGGCGCTACGTATTT+AGG 0.303379 3_2:+79116296 Msa0428280:CDS
TCCGGCCAAACAGCCGGAAT+TGG 0.340541 3_2:-79116041 None:intergenic
GTAGCGCCCTCAAGAAAATT+AGG 0.340967 3_2:-79116287 None:intergenic
CTGAGCCAATTCCGGCTGTT+TGG 0.366949 3_2:+79116036 Msa0428280:CDS
TTCGATGGCTGAGCCAATTC+CGG 0.379483 3_2:+79116028 Msa0428280:CDS
GTTAAGTGGTTCTTCTACTC+AGG 0.396357 3_2:+79116407 Msa0428280:CDS
GAGAGAAGAGAATGACATAT+AGG 0.411659 3_2:-79115992 None:intergenic
GAGTAGAAGAACCACTTAAC+AGG 0.415932 3_2:-79116404 None:intergenic
GGAGAATACCTACAGGAAAC+TGG 0.417162 3_2:-79116262 None:intergenic
GCCAATTCCGGCTGTTTGGC+CGG 0.420441 3_2:+79116040 Msa0428280:CDS
CTGCAATAGAACAACTATCT+AGG 0.426683 3_2:+79115964 Msa0428280:CDS
TGCTCATGTGATGGCATTTG+AGG 0.428221 3_2:+79116774 Msa0428280:CDS
TCCTGCAGAAAGTGGACTTA+TGG 0.436493 3_2:+79116102 Msa0428280:CDS
TGTCATTCTCTTCTCTCTCT+CGG 0.441820 3_2:+79115998 Msa0428280:CDS
GTCTGATTGAAGCAGTATAT+AGG 0.470699 3_2:-79116832 None:intergenic
ATGTTGAAGTTTCGACCGTT+AGG 0.477068 3_2:-79116134 None:intergenic
AACTGCTCCGGCCAAACAGC+CGG 0.482218 3_2:-79116047 None:intergenic
TTGTTCTATTGCAGAGGCCA+TGG 0.498883 3_2:-79115955 None:intergenic
GCTTGAGGATCCGCATTGGC+AGG 0.511109 3_2:+79116807 Msa0428280:CDS
GGGATGGAGAGTGTAGATGA+AGG 0.516088 3_2:-79116216 None:intergenic
CATGTGATGGCATTTGAGGT+TGG 0.522316 3_2:+79116778 Msa0428280:CDS
ACCATAAGTCCACTTTCTGC+AGG 0.523892 3_2:-79116103 None:intergenic
ATAGAATCCACTACTGTTCG+TGG 0.525170 3_2:+79116868 Msa0428280:CDS
TCGTCGTTTACGACCTCGAA+TGG 0.528379 3_2:+79116180 Msa0428280:CDS
AATAAGAGAAACACTCAAAG+TGG 0.535251 3_2:-79115909 None:intergenic
TGCAATGGCTGTCTGAGGGA+TGG 0.545737 3_2:-79116232 None:intergenic
TTATGGTACGACTGGCCTAA+CGG 0.548138 3_2:+79116119 Msa0428280:CDS
GAGCGGAGTCCTGCAGAAAG+TGG 0.548813 3_2:+79116094 Msa0428280:CDS
GACCTTGCAATGGCTGTCTG+AGG 0.550924 3_2:-79116237 None:intergenic
TCACTCGTAGACCTGTTAAG+TGG 0.552659 3_2:+79116393 Msa0428280:CDS
ATTAAGGCATGAAACTGCTC+CGG 0.562441 3_2:-79116059 None:intergenic
AGGTACCGTTGGTCCATTCG+AGG 0.563492 3_2:-79116193 None:intergenic
ATGGAGAGTGTAGATGAAGG+AGG 0.563676 3_2:-79116213 None:intergenic
TGAGGTTGGAGCAGTGCTTG+AGG 0.565540 3_2:+79116792 Msa0428280:CDS
AAGTGGACTTATGGTACGAC+TGG 0.577314 3_2:+79116111 Msa0428280:CDS
AAAATCCCCACGAACAGTAG+TGG 0.582297 3_2:-79116875 None:intergenic
TAGAATCCACTACTGTTCGT+GGG 0.585043 3_2:+79116869 Msa0428280:CDS
TCCCTCAGACAGCCATTGCA+AGG 0.589215 3_2:+79116235 Msa0428280:CDS
ACCTTGCAATGGCTGTCTGA+GGG 0.591070 3_2:-79116236 None:intergenic
TCTCTCGGCTTCATATTCGA+TGG 0.592702 3_2:+79116013 Msa0428280:CDS
CTTTCGTCCAAACATTACAA+AGG 0.600135 3_2:-79116340 None:intergenic
GATGAAACTTAGAGCAGCCA+TGG 0.603003 3_2:+79115938 Msa0428280:exon
GTAGATGAAGGAGGTACCGT+TGG 0.604808 3_2:-79116204 None:intergenic
CGCCCTCAAGAAAATTAGGA+CGG 0.606966 3_2:-79116283 None:intergenic
GAAACTGGACGACCTTGCAA+TGG 0.609877 3_2:-79116247 None:intergenic
AAGGTCGTCCAGTTTCCTGT+AGG 0.614277 3_2:+79116254 Msa0428280:CDS
AGATAGTTGTTCTATTGCAG+AGG 0.619269 3_2:-79115961 None:intergenic
TACGACCTCGAATGGACCAA+CGG 0.625467 3_2:+79116188 Msa0428280:CDS
CAGTGCTTGAGGATCCGCAT+TGG 0.625927 3_2:+79116803 Msa0428280:CDS
AGGATATACTGCTCATGTGA+TGG 0.626399 3_2:+79116765 Msa0428280:CDS
TTAGGACGGAGAATACCTAC+AGG 0.634745 3_2:-79116269 None:intergenic
TTAATGTTTATGAACAAGAG+CGG 0.658259 3_2:+79116077 Msa0428280:CDS
AGAATCCACTACTGTTCGTG+GGG 0.663660 3_2:+79116870 Msa0428280:CDS
TATATAGGAGCCTGCCAATG+CGG 0.691036 3_2:-79116817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATTGTTTCATATA+AGG - chr3_2:79116556-79116575 None:intergenic 15.0%
!! TAATAATTAATAAGCTCAAT+CGG - chr3_2:79116642-79116661 None:intergenic 15.0%
!! AAGAAAAATTGTTTCATATA+AGG - chr3_2:79116556-79116575 None:intergenic 15.0%
!! TAATAATTAATAAGCTCAAT+CGG - chr3_2:79116642-79116661 None:intergenic 15.0%
!! ATAATTTCCTTTGTAATGTT+TGG + chr3_2:79116333-79116352 Msa0428280:CDS 20.0%
!! ATAGTGATAATTTGAATAGA+TGG + chr3_2:79116742-79116761 Msa0428280:intron 20.0%
!! ATAATTTCCTTTGTAATGTT+TGG + chr3_2:79116333-79116352 Msa0428280:CDS 20.0%
!! ATAGTGATAATTTGAATAGA+TGG + chr3_2:79116742-79116761 Msa0428280:intron 20.0%
! TTAATGTTTATGAACAAGAG+CGG + chr3_2:79116077-79116096 Msa0428280:CDS 25.0%
! TCTCTTATATTATCACTCTT+GGG + chr3_2:79116442-79116461 Msa0428280:intron 25.0%
! ATGACAAGATAAGCTTAAAT+AGG - chr3_2:79116483-79116502 None:intergenic 25.0%
!! CTTATCTTGTCATACATTTT+GGG + chr3_2:79116490-79116509 Msa0428280:intron 25.0%
! ATTCACTTCATTCAATATCT+TGG - chr3_2:79116674-79116693 None:intergenic 25.0%
! TTAATGTTTATGAACAAGAG+CGG + chr3_2:79116077-79116096 Msa0428280:CDS 25.0%
! TCTCTTATATTATCACTCTT+GGG + chr3_2:79116442-79116461 Msa0428280:intron 25.0%
! ATGACAAGATAAGCTTAAAT+AGG - chr3_2:79116483-79116502 None:intergenic 25.0%
!! CTTATCTTGTCATACATTTT+GGG + chr3_2:79116490-79116509 Msa0428280:intron 25.0%
! ATTCACTTCATTCAATATCT+TGG - chr3_2:79116674-79116693 None:intergenic 25.0%
AATAAGAGAAACACTCAAAG+TGG - chr3_2:79115912-79115931 None:intergenic 30.0%
GCTCTTGTTCATAAACATTA+AGG - chr3_2:79116078-79116097 None:intergenic 30.0%
CTCTCTTATATTATCACTCT+TGG + chr3_2:79116441-79116460 Msa0428280:intron 30.0%
! GCTTATCTTGTCATACATTT+TGG + chr3_2:79116489-79116508 Msa0428280:intron 30.0%
GTGATAATTTGAATAGATGG+AGG + chr3_2:79116745-79116764 Msa0428280:intron 30.0%
AATAAGAGAAACACTCAAAG+TGG - chr3_2:79115912-79115931 None:intergenic 30.0%
GCTCTTGTTCATAAACATTA+AGG - chr3_2:79116078-79116097 None:intergenic 30.0%
CTCTCTTATATTATCACTCT+TGG + chr3_2:79116441-79116460 Msa0428280:intron 30.0%
! GCTTATCTTGTCATACATTT+TGG + chr3_2:79116489-79116508 Msa0428280:intron 30.0%
GTGATAATTTGAATAGATGG+AGG + chr3_2:79116745-79116764 Msa0428280:intron 30.0%
AGATAGTTGTTCTATTGCAG+AGG - chr3_2:79115964-79115983 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG + chr3_2:79115964-79115983 Msa0428280:CDS 35.0%
GAGAGAAGAGAATGACATAT+AGG - chr3_2:79115995-79116014 None:intergenic 35.0%
CTTTCGTCCAAACATTACAA+AGG - chr3_2:79116343-79116362 None:intergenic 35.0%
TATCACTCTTGGGCTATATT+TGG + chr3_2:79116452-79116471 Msa0428280:intron 35.0%
GTCTGATTGAAGCAGTATAT+AGG - chr3_2:79116835-79116854 None:intergenic 35.0%
AGATAGTTGTTCTATTGCAG+AGG - chr3_2:79115964-79115983 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG + chr3_2:79115964-79115983 Msa0428280:CDS 35.0%
GAGAGAAGAGAATGACATAT+AGG - chr3_2:79115995-79116014 None:intergenic 35.0%
CTTTCGTCCAAACATTACAA+AGG - chr3_2:79116343-79116362 None:intergenic 35.0%
TATCACTCTTGGGCTATATT+TGG + chr3_2:79116452-79116471 Msa0428280:intron 35.0%
GTCTGATTGAAGCAGTATAT+AGG - chr3_2:79116835-79116854 None:intergenic 35.0%
TGTCATTCTCTTCTCTCTCT+CGG + chr3_2:79115998-79116017 Msa0428280:CDS 40.0%
ATTAAGGCATGAAACTGCTC+CGG - chr3_2:79116062-79116081 None:intergenic 40.0%
ATGTTGAAGTTTCGACCGTT+AGG - chr3_2:79116137-79116156 None:intergenic 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG - chr3_2:79116163-79116182 None:intergenic 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG + chr3_2:79116280-79116299 Msa0428280:CDS 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG + chr3_2:79116281-79116300 Msa0428280:CDS 40.0%
GAGTAGAAGAACCACTTAAC+AGG - chr3_2:79116407-79116426 None:intergenic 40.0%
GTTAAGTGGTTCTTCTACTC+AGG + chr3_2:79116407-79116426 Msa0428280:CDS 40.0%
AGGATATACTGCTCATGTGA+TGG + chr3_2:79116765-79116784 Msa0428280:CDS 40.0%
ATAGAATCCACTACTGTTCG+TGG + chr3_2:79116868-79116887 Msa0428280:CDS 40.0%
TAGAATCCACTACTGTTCGT+GGG + chr3_2:79116869-79116888 Msa0428280:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG + chr3_2:79116892-79116911 Msa0428280:CDS 40.0%
TGTCATTCTCTTCTCTCTCT+CGG + chr3_2:79115998-79116017 Msa0428280:CDS 40.0%
ATTAAGGCATGAAACTGCTC+CGG - chr3_2:79116062-79116081 None:intergenic 40.0%
ATGTTGAAGTTTCGACCGTT+AGG - chr3_2:79116137-79116156 None:intergenic 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG - chr3_2:79116163-79116182 None:intergenic 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG + chr3_2:79116280-79116299 Msa0428280:CDS 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG + chr3_2:79116281-79116300 Msa0428280:CDS 40.0%
GAGTAGAAGAACCACTTAAC+AGG - chr3_2:79116407-79116426 None:intergenic 40.0%
GTTAAGTGGTTCTTCTACTC+AGG + chr3_2:79116407-79116426 Msa0428280:CDS 40.0%
AGGATATACTGCTCATGTGA+TGG + chr3_2:79116765-79116784 Msa0428280:CDS 40.0%
ATAGAATCCACTACTGTTCG+TGG + chr3_2:79116868-79116887 Msa0428280:CDS 40.0%
TAGAATCCACTACTGTTCGT+GGG + chr3_2:79116869-79116888 Msa0428280:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG + chr3_2:79116892-79116911 Msa0428280:CDS 40.0%
GATGAAACTTAGAGCAGCCA+TGG + chr3_2:79115938-79115957 Msa0428280:exon 45.0%
TTGTTCTATTGCAGAGGCCA+TGG - chr3_2:79115958-79115977 None:intergenic 45.0%
TCTCTCGGCTTCATATTCGA+TGG + chr3_2:79116013-79116032 Msa0428280:CDS 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG + chr3_2:79116102-79116121 Msa0428280:CDS 45.0%
ACCATAAGTCCACTTTCTGC+AGG - chr3_2:79116106-79116125 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG + chr3_2:79116111-79116130 Msa0428280:CDS 45.0%
!! TTATGGTACGACTGGCCTAA+CGG + chr3_2:79116119-79116138 Msa0428280:CDS 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG - chr3_2:79116216-79116235 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG - chr3_2:79116265-79116284 None:intergenic 45.0%
TTAGGACGGAGAATACCTAC+AGG - chr3_2:79116272-79116291 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG - chr3_2:79116286-79116305 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG - chr3_2:79116290-79116309 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG + chr3_2:79116393-79116412 Msa0428280:CDS 45.0%
GTGGTTCTTCTACTCAGGTT+TGG + chr3_2:79116412-79116431 Msa0428280:intron 45.0%
TGCTCATGTGATGGCATTTG+AGG + chr3_2:79116774-79116793 Msa0428280:CDS 45.0%
! CATGTGATGGCATTTGAGGT+TGG + chr3_2:79116778-79116797 Msa0428280:CDS 45.0%
TATATAGGAGCCTGCCAATG+CGG - chr3_2:79116820-79116839 None:intergenic 45.0%
AGAATCCACTACTGTTCGTG+GGG + chr3_2:79116870-79116889 Msa0428280:CDS 45.0%
AAAATCCCCACGAACAGTAG+TGG - chr3_2:79116878-79116897 None:intergenic 45.0%
! ACTACTGTTCGTGGGGATTT+TGG + chr3_2:79116877-79116896 Msa0428280:CDS 45.0%
! CTACTGTTCGTGGGGATTTT+GGG + chr3_2:79116878-79116897 Msa0428280:CDS 45.0%
GATGAAACTTAGAGCAGCCA+TGG + chr3_2:79115938-79115957 Msa0428280:exon 45.0%
TTGTTCTATTGCAGAGGCCA+TGG - chr3_2:79115958-79115977 None:intergenic 45.0%
TCTCTCGGCTTCATATTCGA+TGG + chr3_2:79116013-79116032 Msa0428280:CDS 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG + chr3_2:79116102-79116121 Msa0428280:CDS 45.0%
ACCATAAGTCCACTTTCTGC+AGG - chr3_2:79116106-79116125 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG + chr3_2:79116111-79116130 Msa0428280:CDS 45.0%
!! TTATGGTACGACTGGCCTAA+CGG + chr3_2:79116119-79116138 Msa0428280:CDS 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG - chr3_2:79116216-79116235 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG - chr3_2:79116265-79116284 None:intergenic 45.0%
TTAGGACGGAGAATACCTAC+AGG - chr3_2:79116272-79116291 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG - chr3_2:79116286-79116305 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG - chr3_2:79116290-79116309 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG + chr3_2:79116393-79116412 Msa0428280:CDS 45.0%
GTGGTTCTTCTACTCAGGTT+TGG + chr3_2:79116412-79116431 Msa0428280:intron 45.0%
TGCTCATGTGATGGCATTTG+AGG + chr3_2:79116774-79116793 Msa0428280:CDS 45.0%
! CATGTGATGGCATTTGAGGT+TGG + chr3_2:79116778-79116797 Msa0428280:CDS 45.0%
TATATAGGAGCCTGCCAATG+CGG - chr3_2:79116820-79116839 None:intergenic 45.0%
AGAATCCACTACTGTTCGTG+GGG + chr3_2:79116870-79116889 Msa0428280:CDS 45.0%
AAAATCCCCACGAACAGTAG+TGG - chr3_2:79116878-79116897 None:intergenic 45.0%
! ACTACTGTTCGTGGGGATTT+TGG + chr3_2:79116877-79116896 Msa0428280:CDS 45.0%
! CTACTGTTCGTGGGGATTTT+GGG + chr3_2:79116878-79116897 Msa0428280:CDS 45.0%
TTCGATGGCTGAGCCAATTC+CGG + chr3_2:79116028-79116047 Msa0428280:CDS 50.0%
TCGTCGTTTACGACCTCGAA+TGG + chr3_2:79116180-79116199 Msa0428280:CDS 50.0%
TACGACCTCGAATGGACCAA+CGG + chr3_2:79116188-79116207 Msa0428280:CDS 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG - chr3_2:79116207-79116226 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG - chr3_2:79116219-79116238 None:intergenic 50.0%
ACCTTGCAATGGCTGTCTGA+GGG - chr3_2:79116239-79116258 None:intergenic 50.0%
GAAACTGGACGACCTTGCAA+TGG - chr3_2:79116250-79116269 None:intergenic 50.0%
AAGGTCGTCCAGTTTCCTGT+AGG + chr3_2:79116254-79116273 Msa0428280:CDS 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG + chr3_2:79116296-79116315 Msa0428280:CDS 50.0%
TTCGATGGCTGAGCCAATTC+CGG + chr3_2:79116028-79116047 Msa0428280:CDS 50.0%
TCGTCGTTTACGACCTCGAA+TGG + chr3_2:79116180-79116199 Msa0428280:CDS 50.0%
TACGACCTCGAATGGACCAA+CGG + chr3_2:79116188-79116207 Msa0428280:CDS 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG - chr3_2:79116207-79116226 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG - chr3_2:79116219-79116238 None:intergenic 50.0%
ACCTTGCAATGGCTGTCTGA+GGG - chr3_2:79116239-79116258 None:intergenic 50.0%
GAAACTGGACGACCTTGCAA+TGG - chr3_2:79116250-79116269 None:intergenic 50.0%
AAGGTCGTCCAGTTTCCTGT+AGG + chr3_2:79116254-79116273 Msa0428280:CDS 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG + chr3_2:79116296-79116315 Msa0428280:CDS 50.0%
CTGAGCCAATTCCGGCTGTT+TGG + chr3_2:79116036-79116055 Msa0428280:CDS 55.0%
! AGGTACCGTTGGTCCATTCG+AGG - chr3_2:79116196-79116215 None:intergenic 55.0%
TGCAATGGCTGTCTGAGGGA+TGG - chr3_2:79116235-79116254 None:intergenic 55.0%
TCCCTCAGACAGCCATTGCA+AGG + chr3_2:79116235-79116254 Msa0428280:CDS 55.0%
GACCTTGCAATGGCTGTCTG+AGG - chr3_2:79116240-79116259 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3_2:79116792-79116811 Msa0428280:CDS 55.0%
CAGTGCTTGAGGATCCGCAT+TGG + chr3_2:79116803-79116822 Msa0428280:CDS 55.0%
CTGAGCCAATTCCGGCTGTT+TGG + chr3_2:79116036-79116055 Msa0428280:CDS 55.0%
! AGGTACCGTTGGTCCATTCG+AGG - chr3_2:79116196-79116215 None:intergenic 55.0%
TGCAATGGCTGTCTGAGGGA+TGG - chr3_2:79116235-79116254 None:intergenic 55.0%
TCCCTCAGACAGCCATTGCA+AGG + chr3_2:79116235-79116254 Msa0428280:CDS 55.0%
GACCTTGCAATGGCTGTCTG+AGG - chr3_2:79116240-79116259 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3_2:79116792-79116811 Msa0428280:CDS 55.0%
CAGTGCTTGAGGATCCGCAT+TGG + chr3_2:79116803-79116822 Msa0428280:CDS 55.0%
GCCAATTCCGGCTGTTTGGC+CGG + chr3_2:79116040-79116059 Msa0428280:CDS 60.0%
TCCGGCCAAACAGCCGGAAT+TGG - chr3_2:79116044-79116063 None:intergenic 60.0%
AACTGCTCCGGCCAAACAGC+CGG - chr3_2:79116050-79116069 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG + chr3_2:79116094-79116113 Msa0428280:CDS 60.0%
! GCTTGAGGATCCGCATTGGC+AGG + chr3_2:79116807-79116826 Msa0428280:CDS 60.0%
GCCAATTCCGGCTGTTTGGC+CGG + chr3_2:79116040-79116059 Msa0428280:CDS 60.0%
TCCGGCCAAACAGCCGGAAT+TGG - chr3_2:79116044-79116063 None:intergenic 60.0%
AACTGCTCCGGCCAAACAGC+CGG - chr3_2:79116050-79116069 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG + chr3_2:79116094-79116113 Msa0428280:CDS 60.0%
! GCTTGAGGATCCGCATTGGC+AGG + chr3_2:79116807-79116826 Msa0428280:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79115906 79116939 79115906 ID=Msa0428280;Name=Msa0428280
chr3_2 mRNA 79115906 79116939 79115906 ID=Msa0428280-mRNA-1;Parent=Msa0428280;Name=Msa0428280-mRNA-1;_AED=0.33;_eAED=0.34;_QI=33|1|0.5|1|1|1|2|0|222
chr3_2 exon 79115906 79116428 79115906 ID=Msa0428280-mRNA-1:exon:21251;Parent=Msa0428280-mRNA-1
chr3_2 exon 79116761 79116939 79116761 ID=Msa0428280-mRNA-1:exon:21252;Parent=Msa0428280-mRNA-1
chr3_2 five_prime_UTR 79115906 79115938 79115906 ID=Msa0428280-mRNA-1:five_prime_utr;Parent=Msa0428280-mRNA-1
chr3_2 CDS 79115939 79116428 79115939 ID=Msa0428280-mRNA-1:cds;Parent=Msa0428280-mRNA-1
chr3_2 CDS 79116761 79116939 79116761 ID=Msa0428280-mRNA-1:cds;Parent=Msa0428280-mRNA-1
Gene Sequence

>Msa0428280

ATGAAACTTAGAGCAGCCATGGCCTCTGCAATAGAACAACTATCTAGGATATTCCTATATGTCATTCTCTTCTCTCTCTCGGCTTCATATTCGATGGCTGAGCCAATTCCGGCTGTTTGGCCGGAGCAGTTTCATGCCTTAATGTTTATGAACAAGAGCGGAGTCCTGCAGAAAGTGGACTTATGGTACGACTGGCCTAACGGTCGAAACTTCAACATCATCCAAAATCAACTCAATGCTGTCGTCGTTTACGACCTCGAATGGACCAACGGTACCTCCTTCATCTACACTCTCCATCCCTCAGACAGCCATTGCAAGGTCGTCCAGTTTCCTGTAGGTATTCTCCGTCCTAATTTTCTTGAGGGCGCTACGTATTTAGGTCAAGAAGATGTTGATAATTTCCTTTGTAATGTTTGGACGAAAGTTGATTTCATTGTGTACTATGAAGACGTTCTCACTCGTAGACCTGTTAAGTGGTTCTTCTACTCAGATGGAGGATATACTGCTCATGTGATGGCATTTGAGGTTGGAGCAGTGCTTGAGGATCCGCATTGGCAGGCTCCTATATACTGCTTCAATCAGACTGAGATAATAATAATAGAATCCACTACTGTTCGTGGGGATTTTGGGAGTTTGATGAGAGGCAAAGTTGATGCTGCTGCTGCATAA

Protein sequence

>Msa0428280

MKLRAAMASAIEQLSRIFLYVILFSLSASYSMAEPIPAVWPEQFHALMFMNKSGVLQKVDLWYDWPNGRNFNIIQNQLNAVVVYDLEWTNGTSFIYTLHPSDSHCKVVQFPVGILRPNFLEGATYLGQEDVDNFLCNVWTKVDFIVYYEDVLTRRPVKWFFYSDGGYTAHVMAFEVGAVLEDPHWQAPIYCFNQTEIIIIESTTVRGDFGSLMRGKVDAAAA*