AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1249740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249740 MtrunA17_Chr8g0365421 85.780 436 10 1 1 436 1 384 0.0 724
Msa1249740 MtrunA17_Chr7g0228011 62.155 362 84 2 76 436 8 317 1.51e-135 392
Msa1249740 MtrunA17_Chr6g0453201 59.016 366 97 2 72 436 7 320 3.42e-132 383
Msa1249740 MtrunA17_Chr6g0466321 54.372 366 114 3 72 436 15 328 7.72e-125 365
Msa1249740 MtrunA17_Chr6g0465501 54.098 366 115 3 72 436 15 328 1.50e-124 364
Msa1249740 MtrunA17_Chr6g0453191 58.112 339 89 2 72 409 7 293 7.02e-116 341
Msa1249740 MtrunA17_Chr8g0351271 41.047 363 155 6 77 435 5 312 2.08e-76 241
Msa1249740 MtrunA17_Chr8g0351481 41.061 358 154 5 77 432 5 307 6.33e-76 240
Msa1249740 MtrunA17_Chr4g0015051 31.807 393 166 11 76 434 6 330 2.55e-34 130
Msa1249740 MtrunA17_Chr4g0014691 32.824 393 161 15 76 434 6 329 2.80e-33 127
Msa1249740 MtrunA17_Chr4g0014541 32.824 393 161 15 76 434 6 329 4.03e-33 127
Msa1249740 MtrunA17_Chr4g0014951 31.552 393 167 11 76 434 6 330 6.04e-33 127
Msa1249740 MtrunA17_Chr4g0014971 30.867 392 171 10 76 434 6 330 2.93e-32 125
Msa1249740 MtrunA17_Chr4g0015091 31.186 388 170 11 76 432 6 327 7.68e-31 121
Msa1249740 MtrunA17_Chr4g0014931 30.749 387 178 8 76 434 6 330 2.46e-30 119
Msa1249740 MtrunA17_Chr7g0235021 33.086 269 144 7 189 431 68 326 5.39e-24 102
Msa1249740 MtrunA17_Chr2g0316731 26.573 429 200 12 40 432 9 358 2.44e-21 95.1
Msa1249740 MtrunA17_Chr2g0281301 27.041 392 186 15 74 432 12 336 3.20e-21 94.4
Msa1249740 MtrunA17_Chr2g0281281 26.923 390 185 15 76 432 1 323 8.83e-20 89.7
Msa1249740 MtrunA17_Chr6g0465551 52.308 65 30 1 72 135 15 79 2.18e-16 73.9
Msa1249740 MtrunA17_Chr4g0015001 31.004 229 128 6 230 432 5 229 2.32e-15 75.1
Msa1249740 MtrunA17_Chr4g0045061 28.159 277 151 9 191 432 357 620 5.72e-15 77.0
Msa1249740 MtrunA17_Chr4g0045041 27.437 277 153 9 191 432 357 620 9.16e-15 76.6
Msa1249740 MtrunA17_Chr8g0385221 35.294 153 80 8 229 367 195 342 3.39e-11 64.7
Msa1249740 MtrunA17_Chr3g0128511 28.417 278 153 9 189 432 70 335 9.48e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249740 AT1G23740.1 63.657 432 90 4 14 436 13 386 7.01e-180 507
Msa1249740 AT4G13010.1 30.769 390 173 11 76 434 6 329 1.56e-27 112
Msa1249740 AT3G15090.1 28.523 298 150 8 77 369 33 272 1.93e-20 92.8
Msa1249740 AT4G21580.1 26.735 389 187 12 76 432 1 323 8.56e-20 90.1
Msa1249740 AT4G21580.3 26.735 389 181 13 76 432 1 317 8.71e-19 87.4
Msa1249740 AT3G56460.1 29.137 278 151 9 189 432 71 336 7.48e-15 75.9

Find 105 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTCCACTCTCTAAATA+TGG 0.138626 8_2:+44705789 None:intergenic
TGAGGAAAGCTTACCGAAAT+TGG 0.162535 8_2:-44707321 Msa1249740:CDS
GGACCTTTGGGATCTATAAT+TGG 0.222062 8_2:+44705762 None:intergenic
GCCTAAACAATTTGGGTCTT+TGG 0.239443 8_2:-44706813 Msa1249740:CDS
AAGAAGGCAGGGAAAGTTTA+AGG 0.274790 8_2:-44707554 Msa1249740:CDS
TTAGATGGGCCTAAACAATT+TGG 0.276099 8_2:-44706821 Msa1249740:CDS
ATTCTTGTTCTCAATGGTTC+TGG 0.283840 8_2:-44706650 Msa1249740:CDS
ACCAAGGCATGCTAGATTCT+TGG 0.306476 8_2:-44707776 Msa1249740:CDS
GCTTGGGTGTATGGAGAATA+TGG 0.307432 8_2:-44707685 Msa1249740:CDS
CAGAACTCTTATTTACTCAT+AGG 0.307864 8_2:+44705591 None:intergenic
GAAAAGTCTTGGAGCTGATT+TGG 0.309843 8_2:-44706230 Msa1249740:CDS
GTTCCTGGCTATGATGTTGC+TGG 0.312264 8_2:-44706923 Msa1249740:CDS
TGTGTCCATTAGACTGTTCC+TGG 0.323261 8_2:-44706938 Msa1249740:intron
AGTTGGAAGCCTAGTGATTC+AGG 0.332144 8_2:-44706624 Msa1249740:intron
GGCACTAAAACCTACAAGTT+TGG 0.343137 8_2:-44706759 Msa1249740:CDS
TTTGTTGTAAACCGGGTATT+CGG 0.343995 8_2:-44705492 Msa1249740:three_prime_UTR
TGAGACTGCTTATGAAGGTT+TGG 0.356657 8_2:-44706702 Msa1249740:CDS
TGAGCAAAGTCCAAACTTGT+AGG 0.358488 8_2:+44706749 None:intergenic
TGGAATCTGTGTGAAGATAT+TGG 0.359838 8_2:-44707297 Msa1249740:CDS
GGCTACGGATTCTCCGCTTC+CGG 0.367463 8_2:-44707533 Msa1249740:intron
ACACAGATTCCACCCAATTT+CGG 0.370262 8_2:+44707308 None:intergenic
AGCAAAAGAAGAAAAGGTTA+TGG 0.372769 8_2:-44707401 Msa1249740:CDS
CACTTCAAGCACTAGACATT+TGG 0.377637 8_2:-44706260 Msa1249740:CDS
AGCAAAAGAGAATGGACCTT+TGG 0.385814 8_2:+44705749 None:intergenic
CCTTTCCACTCTCTAAATAT+GGG 0.387466 8_2:+44705790 None:intergenic
GAAATGAAGGCTTGGGTGTA+TGG 0.398493 8_2:-44707694 Msa1249740:CDS
AAATCTATTCTTGTTCTCAA+TGG 0.403553 8_2:-44706656 Msa1249740:CDS
TAGATGGGCCTAAACAATTT+GGG 0.417483 8_2:-44706820 Msa1249740:CDS
GTGAATGAGAAAGCATTAGA+TGG 0.420736 8_2:-44706836 Msa1249740:CDS
GAGGAAAGCTTACCGAAATT+GGG 0.427969 8_2:-44707320 Msa1249740:CDS
GGCAGTGTAGTAGCACTAAC+AGG 0.429167 8_2:-44705879 Msa1249740:CDS
GCAAAAGAGAATGGACCTTT+GGG 0.433468 8_2:+44705750 None:intergenic
TCCTTCGGAAATGAAGGCTT+GGG 0.433557 8_2:-44707701 Msa1249740:CDS
GCCAAAGACCCAAATTGTTT+AGG 0.436010 8_2:+44706812 None:intergenic
AGAACTCTTATTTACTCATA+GGG 0.437018 8_2:+44705592 None:intergenic
TTCCTGGCTATGATGTTGCT+GGG 0.439986 8_2:-44706922 Msa1249740:CDS
ACAAGTTCCTTCGGAAATGA+AGG 0.448707 8_2:-44707707 Msa1249740:CDS
TGTTGCTGTGCCTGATGTTA+AGG 0.451705 8_2:-44707632 Msa1249740:CDS
TTCCTTCGGAAATGAAGGCT+TGG 0.458870 8_2:-44707702 Msa1249740:CDS
ATTGAAACAAACAAAGCTAC+TGG 0.463741 8_2:-44705702 Msa1249740:CDS
GAAACAACTTGCAACTGATA+AGG 0.464131 8_2:-44707952 Msa1249740:five_prime_UTR
GCCTGATGTTAAGGAAGATC+AGG 0.465613 8_2:-44707623 Msa1249740:CDS
CTCAATGGTTCTGGTGGAGT+TGG 0.465977 8_2:-44706641 Msa1249740:CDS
GCTTCTAGCAAAAGAAGAAA+AGG 0.471216 8_2:-44707407 Msa1249740:CDS
AAGGAAAATCTGAGAGAAAG+TGG 0.473230 8_2:+44707856 None:intergenic
GCTGCTCTTAACCCTGTTGA+TGG 0.476989 8_2:-44707580 Msa1249740:CDS
TGAAGGAAGTGAAGGAAGAA+TGG 0.477949 8_2:+44707885 None:intergenic
GCTATTGAGACTGCTTATGA+AGG 0.483022 8_2:-44706707 Msa1249740:CDS
CTTGTTCTCAATGGTTCTGG+TGG 0.485138 8_2:-44706647 Msa1249740:CDS
TTTCTTCAGAACAGCTCCAT+TGG 0.486934 8_2:+44705818 None:intergenic
GCAACCTGAGCAAAAGAGAA+TGG 0.487160 8_2:+44705741 None:intergenic
ACCTGATCTTCCTTAACATC+AGG 0.488261 8_2:+44707622 None:intergenic
GTAAATGTCATAAAGATTCA+AGG 0.490770 8_2:+44705518 None:intergenic
AGAGAAAGTGGTGAAGATGA+AGG 0.494341 8_2:+44707868 None:intergenic
TTGGAGCTACTGAAAAGTCT+TGG 0.497793 8_2:-44706241 Msa1249740:CDS
TTTATATGATTCATGGGATG+GGG 0.500019 8_2:+44705664 None:intergenic
TATGAAGGTTTGGAGAGGAC+TGG 0.503871 8_2:-44706692 Msa1249740:CDS
GAAGGTTGGCAGCGAAGTAA+AGG 0.506684 8_2:-44706891 Msa1249740:CDS
AGCTGTTGAGGAGAAATTGT+TGG 0.514874 8_2:-44706780 Msa1249740:CDS
AGATTTGTAGTGACTTCCAA+TGG 0.518081 8_2:-44705834 Msa1249740:CDS
GCAGGGAAAGTTTAAGGCTA+CGG 0.519335 8_2:-44707548 Msa1249740:CDS
GAAAGTGACACAAGTTCCTT+CGG 0.521617 8_2:-44707716 Msa1249740:CDS
ACCAAGAATCTAGCATGCCT+TGG 0.523278 8_2:+44707775 None:intergenic
GGCTGAGTACACAGCTGTTG+AGG 0.523349 8_2:-44706792 Msa1249740:CDS
TGTTGATGGTAAAAGAAGGC+AGG 0.523502 8_2:-44707566 Msa1249740:CDS
AAAGTCGGCGATGAAGTGTA+TGG 0.526704 8_2:-44706863 Msa1249740:CDS
GTCACTACAAATCTGAATCC+AGG 0.545336 8_2:+44705843 None:intergenic
GGTGAAGATGAAGGAAGTGA+AGG 0.546247 8_2:+44707877 None:intergenic
GATGTAGTTTATGATGCCAT+TGG 0.546289 8_2:-44706160 Msa1249740:intron
GGATTCAATAGCTATGATAG+TGG 0.554980 8_2:-44707380 Msa1249740:CDS
ACAGGAGCTGTTACACCACC+TGG 0.561590 8_2:-44705861 Msa1249740:CDS
GAGTGAATAATCACCGGAAG+CGG 0.565819 8_2:+44707520 None:intergenic
ACCCCAGCAACATCATAGCC+AGG 0.566870 8_2:+44706920 None:intergenic
GCAATGTGACAGAGCAGTGA+AGG 0.567763 8_2:-44705916 Msa1249740:CDS
AACATCAGGCACAGCAACAT+TGG 0.570963 8_2:+44707636 None:intergenic
TAAATGTCATAAAGATTCAA+GGG 0.572018 8_2:+44705519 None:intergenic
AATGGTGAGGTGAGAAGTTG+TGG 0.574018 8_2:+44707903 None:intergenic
ACCCTGTTGATGGTAAAAGA+AGG 0.577796 8_2:-44707570 Msa1249740:CDS
ATCTACTACTGCTTCATCTG+AGG 0.581286 8_2:-44707743 Msa1249740:CDS
CTAAACCCATATTTAGAGAG+TGG 0.581322 8_2:-44705795 Msa1249740:CDS
GAAGTAAAGGACTTCAAAGT+CGG 0.582450 8_2:-44706878 Msa1249740:CDS
TAAGCAGTCTCAATAGCAAG+AGG 0.589060 8_2:+44706713 None:intergenic
GCAGTGAAGGCAATAAAAGA+AGG 0.594518 8_2:-44705903 Msa1249740:CDS
TGAATGAGAAAGCATTAGAT+GGG 0.597261 8_2:-44706835 Msa1249740:CDS
ACCCAAGCCTTCATTTCCGA+AGG 0.600966 8_2:+44707700 None:intergenic
GCTGGGGTCGTAGTGAAGGT+TGG 0.602197 8_2:-44706905 Msa1249740:CDS
AGAACAAGAATAGATTTACC+AGG 0.605332 8_2:+44706662 None:intergenic
GTTGATGGTAAAAGAAGGCA+GGG 0.608172 8_2:-44707565 Msa1249740:CDS
GGTGAGGTGAGAAGTTGTGG+TGG 0.610962 8_2:+44707906 None:intergenic
CTCTCTTGTCTTCTTCACCA+AGG 0.628610 8_2:-44707792 Msa1249740:CDS
TGTTGCTGGGGTCGTAGTGA+AGG 0.634534 8_2:-44706909 Msa1249740:CDS
AACAAACAAAGCTACTGGAA+AGG 0.637522 8_2:-44705697 Msa1249740:CDS
TGGGTGTATGGAGAATATGG+AGG 0.638579 8_2:-44707682 Msa1249740:CDS
CAAATGTCTAGTGCTTGAAG+TGG 0.641907 8_2:+44706261 None:intergenic
CTGCTTATGAAGGTTTGGAG+AGG 0.648485 8_2:-44706697 Msa1249740:CDS
GAAAGCTTACCGAAATTGGG+TGG 0.653165 8_2:-44707317 Msa1249740:CDS
CCCATATTTAGAGAGTGGAA+AGG 0.653180 8_2:-44705790 Msa1249740:CDS
GAGTAAATACCTGAATCACT+AGG 0.653524 8_2:+44706615 None:intergenic
GTGAAGGCAATAAAAGAAGG+TGG 0.653752 8_2:-44705900 Msa1249740:CDS
TCCTGGCTATGATGTTGCTG+GGG 0.668886 8_2:-44706921 Msa1249740:CDS
TTTGGCTATTGACTACACAA+AGG 0.684942 8_2:-44706212 Msa1249740:CDS
AAGCCAATTATAGATCCCAA+AGG 0.697488 8_2:-44705765 Msa1249740:CDS
AAAACACCAACGTTAAAACG+TGG 0.713375 8_2:-44707995 None:intergenic
GAAGTGAAGGAAGAATGGTG+AGG 0.729256 8_2:+44707890 None:intergenic
ACTACAAATCTGAATCCAGG+TGG 0.755064 8_2:+44705846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATTTCAAACAATT+TGG - chr8_2:44707383-44707402 Msa1249740:CDS 10.0%
!!! ATAATTTTTATATGATTCAT+GGG + chr8_2:44707817-44707836 None:intergenic 10.0%
!!! TATAATTTTTATATGATTCA+TGG + chr8_2:44707818-44707837 None:intergenic 10.0%
!! ATGAATCATATAAAAATTAT+AGG - chr8_2:44707817-44707836 Msa1249740:CDS 10.0%
!!! GTGTATTTTATTAATTAGTT+TGG + chr8_2:44707453-44707472 None:intergenic 15.0%
!!! TTACTTTTGCAAGAAAATTT+AGG - chr8_2:44706209-44706228 Msa1249740:CDS 20.0%
!! CAATTAAGTTTATGTATTCT+AGG - chr8_2:44706478-44706497 Msa1249740:intron 20.0%
!!! TTAAGTACTGAAATCAAATT+TGG - chr8_2:44706506-44706525 Msa1249740:intron 20.0%
!!! TGGTTATAATTTTGAGAAAA+TGG + chr8_2:44706957-44706976 None:intergenic 20.0%
!!! TTTAAAATTTCTTGTGCATA+AGG - chr8_2:44707093-44707112 Msa1249740:intron 20.0%
!! TTAAAATTTCTTGTGCATAA+GGG - chr8_2:44707094-44707113 Msa1249740:intron 20.0%
!!! TAAACTACATCAAATTTTTC+TGG + chr8_2:44707303-44707322 None:intergenic 20.0%
!!! TGAAATTTTTTATCGAAGAT+TGG + chr8_2:44707376-44707395 None:intergenic 20.0%
!! TAAATGTCATAAAGATTCAA+GGG + chr8_2:44707956-44707975 None:intergenic 20.0%
!!! TTTACTTTTTTGTTGTAAAC+CGG - chr8_2:44707972-44707991 Msa1249740:five_prime_UTR 20.0%
!!! TTTTTTGGTTACTTTTTGGT+TGG + chr8_2:44705648-44705667 None:intergenic 25.0%
!!! CAAGTTTTTTGGTTACTTTT+TGG + chr8_2:44705652-44705671 None:intergenic 25.0%
!!! GTTTTTGTTTTTCTATGTTG+TGG - chr8_2:44705987-44706006 Msa1249740:intron 25.0%
!!! TGAAGATGATTTTAGAATTG+AGG - chr8_2:44706133-44706152 Msa1249740:intron 25.0%
! AAATCTATTCTTGTTCTCAA+TGG - chr8_2:44706816-44706835 Msa1249740:CDS 25.0%
!! GAAAAGAAGAATTTTACCAA+TGG + chr8_2:44707331-44707350 None:intergenic 25.0%
!! TTTTATATGATTCATGGGAT+GGG + chr8_2:44707812-44707831 None:intergenic 25.0%
!! TTTTTATATGATTCATGGGA+TGG + chr8_2:44707813-44707832 None:intergenic 25.0%
!! AGAACTCTTATTTACTCATA+GGG + chr8_2:44707883-44707902 None:intergenic 25.0%
! GTAAATGTCATAAAGATTCA+AGG + chr8_2:44707957-44707976 None:intergenic 25.0%
!!! TTACTTTTTTGTTGTAAACC+GGG - chr8_2:44707973-44707992 Msa1249740:five_prime_UTR 25.0%
!!! GAGTTTTGAGACAAGTTTTT+TGG + chr8_2:44705663-44705682 None:intergenic 30.0%
AAAAGAGAGTGAATAATCAC+CGG + chr8_2:44705961-44705980 None:intergenic 30.0%
AGCAAAAGAAGAAAAGGTTA+TGG - chr8_2:44706071-44706090 Msa1249740:intron 30.0%
AATAAGCTGAAAACACCTTA+TGG + chr8_2:44706360-44706379 None:intergenic 30.0%
!! TGAATGAGAAAGCATTAGAT+GGG - chr8_2:44706637-44706656 Msa1249740:CDS 30.0%
AGAACAAGAATAGATTTACC+AGG + chr8_2:44706813-44706832 None:intergenic 30.0%
CTACAATATTTCAGCATGAA+AGG + chr8_2:44706894-44706913 None:intergenic 30.0%
ATGATATTGACACATTGTGT+TGG + chr8_2:44706977-44706996 None:intergenic 30.0%
AAAGTTCTTAGTCAGGTAAA+GGG + chr8_2:44707053-44707072 None:intergenic 30.0%
AAAAGTTCTTAGTCAGGTAA+AGG + chr8_2:44707054-44707073 None:intergenic 30.0%
! TTTTAGACGAAGTATGTTTC+TGG - chr8_2:44707070-44707089 Msa1249740:intron 30.0%
!! ACTGATTTTCAAAAACTCTC+TGG + chr8_2:44707409-44707428 None:intergenic 30.0%
ATTGAAACAAACAAAGCTAC+TGG - chr8_2:44707770-44707789 Msa1249740:CDS 30.0%
TTTATATGATTCATGGGATG+GGG + chr8_2:44707811-44707830 None:intergenic 30.0%
! CAGAACTCTTATTTACTCAT+AGG + chr8_2:44707884-44707903 None:intergenic 30.0%
GAAACAACTTGCAACTGATA+AGG - chr8_2:44705520-44705539 Msa1249740:three_prime_UTR 35.0%
AAGGAAAATCTGAGAGAAAG+TGG + chr8_2:44705619-44705638 None:intergenic 35.0%
!!! ACTTTTTGGTTGGAAAGTGA+AGG + chr8_2:44705638-44705657 None:intergenic 35.0%
GCTTCTAGCAAAAGAAGAAA+AGG - chr8_2:44706065-44706084 Msa1249740:intron 35.0%
GGATTCAATAGCTATGATAG+TGG - chr8_2:44706092-44706111 Msa1249740:intron 35.0%
TGGAATCTGTGTGAAGATAT+TGG - chr8_2:44706175-44706194 Msa1249740:CDS 35.0%
TCGCTAATTACATGTCCATA+AGG - chr8_2:44706342-44706361 Msa1249740:intron 35.0%
! AGGTGTTTTCAGCTTATTTC+TGG - chr8_2:44706362-44706381 Msa1249740:intron 35.0%
GAAGTAAAGGACTTCAAAGT+CGG - chr8_2:44706594-44706613 Msa1249740:intron 35.0%
!! GTGAATGAGAAAGCATTAGA+TGG - chr8_2:44706636-44706655 Msa1249740:CDS 35.0%
TTAGATGGGCCTAAACAATT+TGG - chr8_2:44706651-44706670 Msa1249740:CDS 35.0%
TAGATGGGCCTAAACAATTT+GGG - chr8_2:44706652-44706671 Msa1249740:CDS 35.0%
ATTCTTGTTCTCAATGGTTC+TGG - chr8_2:44706822-44706841 Msa1249740:CDS 35.0%
GAGTAAATACCTGAATCACT+AGG + chr8_2:44706860-44706879 None:intergenic 35.0%
CAATGTGTCAATATCATGTC+CGG - chr8_2:44706980-44706999 Msa1249740:intron 35.0%
TCGTCTAAAAGTTCTTAGTC+AGG + chr8_2:44707060-44707079 None:intergenic 35.0%
! CAGCTAGCTAAACAAGTTTT+TGG - chr8_2:44707171-44707190 Msa1249740:intron 35.0%
! TTTGGCTATTGACTACACAA+AGG - chr8_2:44707260-44707279 Msa1249740:intron 35.0%
GATGTAGTTTATGATGCCAT+TGG - chr8_2:44707312-44707331 Msa1249740:CDS 35.0%
AGTTTATAGACCAAAACGTG+AGG - chr8_2:44707426-44707445 Msa1249740:intron 35.0%
AAGACGCGTTTGTAGATTTA+AGG - chr8_2:44707498-44707517 Msa1249740:intron 35.0%
AGATTTGTAGTGACTTCCAA+TGG - chr8_2:44707638-44707657 Msa1249740:CDS 35.0%
CTAAACCCATATTTAGAGAG+TGG - chr8_2:44707677-44707696 Msa1249740:CDS 35.0%
CCTTTCCACTCTCTAAATAT+GGG + chr8_2:44707685-44707704 None:intergenic 35.0%
ACCTTTCCACTCTCTAAATA+TGG + chr8_2:44707686-44707705 None:intergenic 35.0%
AAGCCAATTATAGATCCCAA+AGG - chr8_2:44707707-44707726 Msa1249740:CDS 35.0%
AACAAACAAAGCTACTGGAA+AGG - chr8_2:44707775-44707794 Msa1249740:CDS 35.0%
! TTTGTTGTAAACCGGGTATT+CGG - chr8_2:44707980-44707999 Msa1249740:five_prime_UTR 35.0%
TGAAGGAAGTGAAGGAAGAA+TGG + chr8_2:44705590-44705609 None:intergenic 40.0%
AGAGAAAGTGGTGAAGATGA+AGG + chr8_2:44705607-44705626 None:intergenic 40.0%
ATCTACTACTGCTTCATCTG+AGG - chr8_2:44705729-44705748 Msa1249740:CDS 40.0%
GAAAGTGACACAAGTTCCTT+CGG - chr8_2:44705756-44705775 Msa1249740:CDS 40.0%
ACAAGTTCCTTCGGAAATGA+AGG - chr8_2:44705765-44705784 Msa1249740:CDS 40.0%
ACCTGATCTTCCTTAACATC+AGG + chr8_2:44705853-44705872 None:intergenic 40.0%
!! ACCCTGTTGATGGTAAAAGA+AGG - chr8_2:44705902-44705921 Msa1249740:CDS 40.0%
! GCCTTCTTTTACCATCAACA+GGG + chr8_2:44705906-44705925 None:intergenic 40.0%
! TGCCTTCTTTTACCATCAAC+AGG + chr8_2:44705907-44705926 None:intergenic 40.0%
!! TGTTGATGGTAAAAGAAGGC+AGG - chr8_2:44705906-44705925 Msa1249740:CDS 40.0%
!! GTTGATGGTAAAAGAAGGCA+GGG - chr8_2:44705907-44705926 Msa1249740:CDS 40.0%
AAGAAGGCAGGGAAAGTTTA+AGG - chr8_2:44705918-44705937 Msa1249740:CDS 40.0%
TGAGGAAAGCTTACCGAAAT+TGG - chr8_2:44706151-44706170 Msa1249740:intron 40.0%
GAGGAAAGCTTACCGAAATT+GGG - chr8_2:44706152-44706171 Msa1249740:intron 40.0%
ACACAGATTCCACCCAATTT+CGG + chr8_2:44706167-44706186 None:intergenic 40.0%
CATGTACTTGTGAGACTGTT+TGG - chr8_2:44706304-44706323 Msa1249740:intron 40.0%
GCCTAAACAATTTGGGTCTT+TGG - chr8_2:44706659-44706678 Msa1249740:CDS 40.0%
GCCAAAGACCCAAATTGTTT+AGG + chr8_2:44706663-44706682 None:intergenic 40.0%
AGCTGTTGAGGAGAAATTGT+TGG - chr8_2:44706692-44706711 Msa1249740:CDS 40.0%
GGCACTAAAACCTACAAGTT+TGG - chr8_2:44706713-44706732 Msa1249740:CDS 40.0%
TGAGCAAAGTCCAAACTTGT+AGG + chr8_2:44706726-44706745 None:intergenic 40.0%
TAAGCAGTCTCAATAGCAAG+AGG + chr8_2:44706762-44706781 None:intergenic 40.0%
GCTATTGAGACTGCTTATGA+AGG - chr8_2:44706765-44706784 Msa1249740:CDS 40.0%
TGAGACTGCTTATGAAGGTT+TGG - chr8_2:44706770-44706789 Msa1249740:CDS 40.0%
CATGTAATCATCACATGCGT+CGG + chr8_2:44706925-44706944 None:intergenic 40.0%
GTTATTGCTCTATGAAGCAC+AGG + chr8_2:44707014-44707033 None:intergenic 40.0%
GCTGCAAGTCATTAAAGGTA+TGG + chr8_2:44707155-44707174 None:intergenic 40.0%
AGCTAGCTGCAAGTCATTAA+AGG + chr8_2:44707160-44707179 None:intergenic 40.0%
CAAATGTCTAGTGCTTGAAG+TGG + chr8_2:44707214-44707233 None:intergenic 40.0%
CACTTCAAGCACTAGACATT+TGG - chr8_2:44707212-44707231 Msa1249740:intron 40.0%
TTGGAGCTACTGAAAAGTCT+TGG - chr8_2:44707231-44707250 Msa1249740:intron 40.0%
GAAAAGTCTTGGAGCTGATT+TGG - chr8_2:44707242-44707261 Msa1249740:intron 40.0%
!! TTAGTTTGGTCCTCACGTTT+TGG + chr8_2:44707439-44707458 None:intergenic 40.0%
! CCAAGTAAAGGAGGTTAGTT+TGG + chr8_2:44707525-44707544 None:intergenic 40.0%
CCAAACTAACCTCCTTTACT+TGG - chr8_2:44707522-44707541 Msa1249740:intron 40.0%
TGCAAATCACCAAGTAAAGG+AGG + chr8_2:44707534-44707553 None:intergenic 40.0%
! TCCTTTACTTGGTGATTTGC+AGG - chr8_2:44707533-44707552 Msa1249740:intron 40.0%
! CCTTTACTTGGTGATTTGCA+GGG - chr8_2:44707534-44707553 Msa1249740:CDS 40.0%
GCAGTGAAGGCAATAAAAGA+AGG - chr8_2:44707569-44707588 Msa1249740:CDS 40.0%
GTGAAGGCAATAAAAGAAGG+TGG - chr8_2:44707572-44707591 Msa1249740:CDS 40.0%
ACTACAAATCTGAATCCAGG+TGG + chr8_2:44707629-44707648 None:intergenic 40.0%
GTCACTACAAATCTGAATCC+AGG + chr8_2:44707632-44707651 None:intergenic 40.0%
TTTCTTCAGAACAGCTCCAT+TGG + chr8_2:44707657-44707676 None:intergenic 40.0%
CCCATATTTAGAGAGTGGAA+AGG - chr8_2:44707682-44707701 Msa1249740:CDS 40.0%
!! GGACCTTTGGGATCTATAAT+TGG + chr8_2:44707713-44707732 None:intergenic 40.0%
GCAAAAGAGAATGGACCTTT+GGG + chr8_2:44707725-44707744 None:intergenic 40.0%
AGCAAAAGAGAATGGACCTT+TGG + chr8_2:44707726-44707745 None:intergenic 40.0%
AATGGTGAGGTGAGAAGTTG+TGG + chr8_2:44705572-44705591 None:intergenic 45.0%
GAAGTGAAGGAAGAATGGTG+AGG + chr8_2:44705585-44705604 None:intergenic 45.0%
GGTGAAGATGAAGGAAGTGA+AGG + chr8_2:44705598-44705617 None:intergenic 45.0%
CTCTCTTGTCTTCTTCACCA+AGG - chr8_2:44705680-44705699 Msa1249740:CDS 45.0%
ACCAAGGCATGCTAGATTCT+TGG - chr8_2:44705696-44705715 Msa1249740:CDS 45.0%
ACCAAGAATCTAGCATGCCT+TGG + chr8_2:44705700-44705719 None:intergenic 45.0%
TTCCTTCGGAAATGAAGGCT+TGG - chr8_2:44705770-44705789 Msa1249740:CDS 45.0%
TCCTTCGGAAATGAAGGCTT+GGG - chr8_2:44705771-44705790 Msa1249740:CDS 45.0%
GAAATGAAGGCTTGGGTGTA+TGG - chr8_2:44705778-44705797 Msa1249740:CDS 45.0%
GCTTGGGTGTATGGAGAATA+TGG - chr8_2:44705787-44705806 Msa1249740:CDS 45.0%
TGGGTGTATGGAGAATATGG+AGG - chr8_2:44705790-44705809 Msa1249740:CDS 45.0%
AACATCAGGCACAGCAACAT+TGG + chr8_2:44705839-44705858 None:intergenic 45.0%
TGTTGCTGTGCCTGATGTTA+AGG - chr8_2:44705840-44705859 Msa1249740:CDS 45.0%
GCCTGATGTTAAGGAAGATC+AGG - chr8_2:44705849-44705868 Msa1249740:CDS 45.0%
! GCAGGGAAAGTTTAAGGCTA+CGG - chr8_2:44705924-44705943 Msa1249740:intron 45.0%
GAGTGAATAATCACCGGAAG+CGG + chr8_2:44705955-44705974 None:intergenic 45.0%
GAAAGCTTACCGAAATTGGG+TGG - chr8_2:44706155-44706174 Msa1249740:intron 45.0%
TGTGTCCATTAGACTGTTCC+TGG - chr8_2:44706534-44706553 Msa1249740:intron 45.0%
CATAGCCAGGAACAGTCTAA+TGG + chr8_2:44706542-44706561 None:intergenic 45.0%
TTCCTGGCTATGATGTTGCT+GGG - chr8_2:44706550-44706569 Msa1249740:intron 45.0%
AAAGTCGGCGATGAAGTGTA+TGG - chr8_2:44706609-44706628 Msa1249740:intron 45.0%
CTGCTTATGAAGGTTTGGAG+AGG - chr8_2:44706775-44706794 Msa1249740:CDS 45.0%
TATGAAGGTTTGGAGAGGAC+TGG - chr8_2:44706780-44706799 Msa1249740:CDS 45.0%
!! CTTGTTCTCAATGGTTCTGG+TGG - chr8_2:44706825-44706844 Msa1249740:CDS 45.0%
AGTTGGAAGCCTAGTGATTC+AGG - chr8_2:44706848-44706867 Msa1249740:CDS 45.0%
CCCTGCAAATCACCAAGTAA+AGG + chr8_2:44707537-44707556 None:intergenic 45.0%
! AGGTCCATTCTCTTTTGCTC+AGG - chr8_2:44707727-44707746 Msa1249740:CDS 45.0%
GCAACCTGAGCAAAAGAGAA+TGG + chr8_2:44707734-44707753 None:intergenic 45.0%
ACCCAAGCCTTCATTTCCGA+AGG + chr8_2:44705775-44705794 None:intergenic 50.0%
GCTGCTCTTAACCCTGTTGA+TGG - chr8_2:44705892-44705911 Msa1249740:CDS 50.0%
GTTCCTGGCTATGATGTTGC+TGG - chr8_2:44706549-44706568 Msa1249740:intron 50.0%
TCCTGGCTATGATGTTGCTG+GGG - chr8_2:44706551-44706570 Msa1249740:intron 50.0%
GAAGGTTGGCAGCGAAGTAA+AGG - chr8_2:44706581-44706600 Msa1249740:intron 50.0%
! GAGAGGACTGGATTTTCTCC+TGG - chr8_2:44706792-44706811 Msa1249740:CDS 50.0%
!! CTCAATGGTTCTGGTGGAGT+TGG - chr8_2:44706831-44706850 Msa1249740:CDS 50.0%
GCAATGTGACAGAGCAGTGA+AGG - chr8_2:44707556-44707575 Msa1249740:CDS 50.0%
GGCAGTGTAGTAGCACTAAC+AGG - chr8_2:44707593-44707612 Msa1249740:CDS 50.0%
GGTGAGGTGAGAAGTTGTGG+TGG + chr8_2:44705569-44705588 None:intergenic 55.0%
ACCCCAGCAACATCATAGCC+AGG + chr8_2:44706555-44706574 None:intergenic 55.0%
TGTTGCTGGGGTCGTAGTGA+AGG - chr8_2:44706563-44706582 Msa1249740:intron 55.0%
GGCTGAGTACACAGCTGTTG+AGG - chr8_2:44706680-44706699 Msa1249740:CDS 55.0%
TGAAGCACAGGCACAGACAC+CGG + chr8_2:44707002-44707021 None:intergenic 55.0%
ACAGGAGCTGTTACACCACC+TGG - chr8_2:44707611-44707630 Msa1249740:CDS 55.0%
GGCTACGGATTCTCCGCTTC+CGG - chr8_2:44705939-44705958 Msa1249740:intron 60.0%
GCTGGGGTCGTAGTGAAGGT+TGG - chr8_2:44706567-44706586 Msa1249740:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 44705491 44708003 44705491 ID=Msa1249740;Name=Msa1249740
chr8_2 mRNA 44705491 44708003 44705491 ID=Msa1249740-mRNA-1;Parent=Msa1249740;Name=Msa1249740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=65|0.75|0.8|1|1|1|5|183|436
chr8_2 exon 44705491 44705939 44705491 ID=Msa1249740-mRNA-1:exon:13585;Parent=Msa1249740-mRNA-1
chr8_2 exon 44706161 44706320 44706161 ID=Msa1249740-mRNA-1:exon:13584;Parent=Msa1249740-mRNA-1
chr8_2 exon 44706625 44706948 44706625 ID=Msa1249740-mRNA-1:exon:13583;Parent=Msa1249740-mRNA-1
chr8_2 exon 44707289 44707444 44707289 ID=Msa1249740-mRNA-1:exon:13582;Parent=Msa1249740-mRNA-1
chr8_2 exon 44707534 44708003 44707534 ID=Msa1249740-mRNA-1:exon:13581;Parent=Msa1249740-mRNA-1
chr8_2 five_prime_UTR 44707939 44708003 44707939 ID=Msa1249740-mRNA-1:five_prime_utr;Parent=Msa1249740-mRNA-1
chr8_2 CDS 44707534 44707938 44707534 ID=Msa1249740-mRNA-1:cds;Parent=Msa1249740-mRNA-1
chr8_2 CDS 44707289 44707444 44707289 ID=Msa1249740-mRNA-1:cds;Parent=Msa1249740-mRNA-1
chr8_2 CDS 44706625 44706948 44706625 ID=Msa1249740-mRNA-1:cds;Parent=Msa1249740-mRNA-1
chr8_2 CDS 44706161 44706320 44706161 ID=Msa1249740-mRNA-1:cds;Parent=Msa1249740-mRNA-1
chr8_2 CDS 44705674 44705939 44705674 ID=Msa1249740-mRNA-1:cds;Parent=Msa1249740-mRNA-1
chr8_2 three_prime_UTR 44705491 44705673 44705491 ID=Msa1249740-mRNA-1:three_prime_utr;Parent=Msa1249740-mRNA-1
Gene Sequence

>Msa1249740

ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTTCCTTCACTTCCTTCATCTTCACCACTTTCTCTCAGATTTTCCTTCACTTTCCAACCAAAAAGTAACCAAAAAACTTGTCTCAAAACTCTCTTGTCTTCTTCACCAAGGCATGCTAGATTCTTGGTGAAGTCTCAATCTACTACTGCTTCATCTGAGGCTGTGAAAGTGACACAAGTTCCTTCGGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTGTTGAAATTTGATTCCAATGTTGCTGTGCCTGATGTTAAGGAAGATCAGGTTCTTGTTAAAGTTGTTGCTGCTGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACGGATTCTCCGCTTCCGCATCTTAGTTCAATTGCTTCTAGCAAAAGAAGAAAAGGTTATGGATTCAATAGCTATGATAGTGGAGAGTATAAAGTTATCATTGAAGATGATTTTAGAATTGAGGAAAGCTTACCGAAATTGGGTGGAATCTGTGTGAAGATATTGGATGTTGCAACTGTTCCTGGCTATGATGTTGCTGGGGTCGTAGTGAAGGTTGGCAGCGAAGTAAAGGACTTCAAAGTCGGCGATGAAGTGTATGGTGATGTGAATGAGAAAGCATTAGATGGGCCTAAACAATTTGGGTCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTACAAGTTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCTATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGACATTTGGAGCTACTGAAAAGTCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGAGCAGTGAAGGCAATAAAAGAAGGTGGCAGTGTAGTAGCACTAACAGGAGCTGTTACACCACCTGGATTCAGATTTGTAGTGACTTCCAATGGAGCTGTTCTGAAGAAACTAAACCCATATTTAGAGAGTGGAAAGGTGAAGCCAATTATAGATCCCAAAGGTCCATTCTCTTTTGCTCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCCATGA

Protein sequence

>Msa1249740

MSLSTTTSHLTILPSLPSSSPLSLRFSFTFQPKSNQKTCLKTLLSSSPRHARFLVKSQSTTASSEAVKVTQVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPHLSSIASSKRRKGYGFNSYDSGEYKVIIEDDFRIEESLPKLGGICVKILDVATVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVNEKALDGPKQFGSLAEYTAVEEKLLALKPTSLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRHLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFSFAQVAEAFSYIETNKATGKVVIFPIP*