AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070580 MtrunA17_Chr1g0184461 83.333 504 79 1 1 499 1 504 0.0 846
Msa0070580 MtrunA17_Chr1g0184421 82.961 493 79 2 12 499 12 504 0.0 823
Msa0070580 MtrunA17_Chr1g0184471 87.348 411 32 1 1 411 1 391 0.0 692
Msa0070580 MtrunA17_Chr7g0260831 64.076 476 170 1 25 500 29 503 0.0 637
Msa0070580 MtrunA17_Chr7g0260821 61.966 468 177 1 33 500 38 504 0.0 611
Msa0070580 MtrunA17_Chr7g0255131 45.924 503 244 9 16 499 15 508 1.98e-147 434
Msa0070580 MtrunA17_Chr7g0225531 43.307 508 269 8 2 500 15 512 4.70e-142 421
Msa0070580 MtrunA17_Chr3g0119681 44.219 493 244 7 30 500 35 518 6.10e-139 413
Msa0070580 MtrunA17_Chr4g0026941 44.301 465 231 10 51 499 87 539 7.11e-125 377
Msa0070580 MtrunA17_Chr2g0321171 43.046 453 239 8 48 496 58 495 6.63e-120 363
Msa0070580 MtrunA17_Chr1g0178971 41.164 464 247 8 48 499 63 512 1.62e-117 357
Msa0070580 MtrunA17_Chr4g0038271 40.588 510 262 16 27 509 75 570 7.39e-113 347
Msa0070580 MtrunA17_Chr1g0164321 38.431 497 267 12 37 504 66 552 4.16e-110 340
Msa0070580 MtrunA17_Chr8g0348751 37.711 533 299 12 4 513 2 524 2.44e-109 337
Msa0070580 MtrunA17_Chr3g0104351 38.153 498 269 11 33 503 35 520 1.09e-106 330
Msa0070580 MtrunA17_Chr8g0387001 37.751 498 279 11 35 511 30 517 3.16e-104 323
Msa0070580 MtrunA17_Chr5g0429651 37.702 496 268 11 33 501 29 510 3.63e-104 323
Msa0070580 MtrunA17_Chr8g0351391 37.945 477 268 11 38 499 48 511 8.48e-100 311
Msa0070580 MtrunA17_Chr4g0067191 35.581 534 281 16 8 499 3 515 1.41e-95 301
Msa0070580 MtrunA17_Chr8g0351311 35.865 474 275 10 38 495 48 508 3.90e-94 297
Msa0070580 MtrunA17_Chr1g0204271 36.322 435 249 9 38 456 42 464 1.54e-92 293
Msa0070580 MtrunA17_Chr6g0449361 33.333 489 300 11 26 499 26 503 5.33e-92 291
Msa0070580 MtrunA17_Chr1g0171041 34.757 515 295 15 11 499 7 506 1.07e-90 288
Msa0070580 MtrunA17_Chr7g0227291 34.476 496 301 11 16 499 11 494 2.14e-90 287
Msa0070580 MtrunA17_Chr7g0214931 41.039 385 207 7 37 403 57 439 2.26e-89 282
Msa0070580 MtrunA17_Chr6g0449341 33.205 518 308 11 10 499 56 563 2.95e-88 283
Msa0070580 MtrunA17_Chr7g0227281 33.932 501 304 12 11 499 9 494 3.58e-88 281
Msa0070580 MtrunA17_Chr6g0449381 35.023 434 256 9 82 499 82 505 7.16e-88 280
Msa0070580 MtrunA17_Chr4g0004481 33.465 505 310 13 6 498 1 491 3.11e-86 276
Msa0070580 MtrunA17_Chr8g0380501 35.349 430 256 9 81 499 73 491 1.44e-85 274
Msa0070580 MtrunA17_Chr1g0163391 34.109 516 307 15 7 501 1 504 3.71e-85 273
Msa0070580 MtrunA17_Chr8g0351461 35.537 484 277 13 5 467 9 478 2.94e-84 271
Msa0070580 MtrunA17_Chr6g0449331 32.689 517 312 11 10 499 8 515 1.77e-83 269
Msa0070580 MtrunA17_Chr1g0163491 33.663 505 301 13 19 501 31 523 2.53e-83 269
Msa0070580 MtrunA17_Chr6g0449351 32.483 431 269 8 81 498 41 462 8.48e-83 266
Msa0070580 MtrunA17_Chr8g0351401 36.344 454 255 11 35 467 39 479 3.82e-82 266
Msa0070580 MtrunA17_Chr8g0351421 33.951 486 283 12 5 467 9 479 5.66e-82 265
Msa0070580 MtrunA17_Chr1g0163501 33.266 493 299 13 27 501 21 501 8.40e-82 265
Msa0070580 MtrunA17_Chr1g0163281 33.725 510 303 15 12 501 27 521 8.88e-82 265
Msa0070580 MtrunA17_Chr1g0163351 32.871 505 304 15 19 501 16 507 2.70e-80 261
Msa0070580 MtrunA17_Chr8g0351441 34.667 450 260 11 39 467 42 478 2.04e-79 258
Msa0070580 MtrunA17_Chr1g0163401 32.762 525 309 15 5 499 2 512 8.03e-79 257
Msa0070580 MtrunA17_Chr1g0164351 40.379 369 194 9 27 372 57 422 2.30e-78 253
Msa0070580 MtrunA17_Chr1g0163421 32.630 521 290 17 15 499 45 540 4.31e-78 256
Msa0070580 MtrunA17_Chr1g0163211 31.650 515 315 14 7 501 6 503 5.49e-78 254
Msa0070580 MtrunA17_Chr1g0163511 31.262 531 318 17 3 501 5 520 1.50e-77 254
Msa0070580 MtrunA17_Chr1g0163461 30.651 522 304 15 12 499 22 519 4.51e-76 250
Msa0070580 MtrunA17_Chr1g0163451 30.174 517 310 15 14 499 28 524 1.16e-73 244
Msa0070580 MtrunA17_Chr1g0183611 34.625 413 238 9 89 478 3 406 1.48e-73 240
Msa0070580 MtrunA17_Chr1g0163431 37.607 351 201 9 83 418 42 389 6.50e-67 223
Msa0070580 MtrunA17_Chr1g0163371 38.182 220 123 4 289 501 11 224 1.56e-46 162
Msa0070580 MtrunA17_Chr5g0403451 36.328 256 123 6 277 499 31 279 1.32e-45 162
Msa0070580 MtrunA17_Chr1g0204241 32.278 316 183 9 183 494 4 292 1.15e-42 154
Msa0070580 MtrunA17_Chr5g0403441 33.333 291 168 8 19 308 31 296 4.77e-41 150
Msa0070580 MtrunA17_Chr1g0184481 89.041 73 7 1 430 501 1 73 3.15e-39 137
Msa0070580 MtrunA17_Chr2g0309301 43.902 164 86 2 171 333 1 159 2.12e-38 139
Msa0070580 MtrunA17_Chr2g0308941 34.807 181 106 2 80 249 14 193 9.54e-31 119
Msa0070580 MtrunA17_Chr0c19g0493771 25.778 450 299 17 76 508 226 657 3.24e-30 125
Msa0070580 MtrunA17_Chr1g0163361 31.799 239 155 7 14 248 27 261 2.84e-29 117
Msa0070580 MtrunA17_Chr1g0179811 25.342 438 290 16 81 500 122 540 3.09e-27 115
Msa0070580 MtrunA17_Chr7g0215181 25.069 363 243 8 112 466 137 478 9.37e-26 110
Msa0070580 MtrunA17_Chr2g0313771 25.122 410 258 16 78 466 111 492 6.18e-24 105
Msa0070580 MtrunA17_Chr7g0248991 26.050 357 231 14 80 416 8 351 1.01e-23 103
Msa0070580 MtrunA17_Chr1g0174471 22.532 466 315 15 11 452 30 473 2.50e-23 103
Msa0070580 MtrunA17_Chr6g0457421 26.415 371 228 12 112 466 135 476 9.80e-23 101
Msa0070580 MtrunA17_Chr2g0313821 24.424 434 271 16 81 484 105 511 4.52e-22 99.8
Msa0070580 MtrunA17_Chr2g0313781 23.404 423 270 16 100 484 117 523 6.50e-22 99.4
Msa0070580 MtrunA17_Chr2g0307291 23.965 459 295 16 53 484 82 513 9.55e-22 99.0
Msa0070580 MtrunA17_Chr8g0354531 24.339 378 244 12 108 466 260 614 9.65e-22 99.4
Msa0070580 MtrunA17_Chr5g0396521 23.729 472 297 18 81 503 117 574 1.17e-21 99.0
Msa0070580 MtrunA17_Chr5g0443401 28.632 234 144 6 244 466 226 447 1.55e-21 97.8
Msa0070580 MtrunA17_Chr3g0128461 24.439 401 253 12 110 484 143 519 1.87e-21 97.8
Msa0070580 MtrunA17_Chr1g0174451 25.265 471 301 19 9 452 12 458 1.93e-21 97.8
Msa0070580 MtrunA17_Chr2g0313831 24.615 455 268 20 68 484 94 511 2.07e-21 97.8
Msa0070580 MtrunA17_Chr2g0307301 23.965 459 295 16 53 484 82 513 2.37e-21 97.8
Msa0070580 MtrunA17_Chr2g0309311 38.255 149 65 3 290 438 30 151 2.87e-21 92.0
Msa0070580 MtrunA17_Chr1g0203151 23.846 390 241 14 100 466 124 480 3.35e-21 97.1
Msa0070580 MtrunA17_Chr6g0479681 23.573 403 242 14 100 466 126 498 4.35e-21 97.1
Msa0070580 MtrunA17_Chr1g0203141 22.280 386 252 12 100 466 128 484 7.66e-21 95.9
Msa0070580 MtrunA17_Chr2g0313791 25.122 410 238 16 110 484 131 506 9.45e-21 95.9
Msa0070580 MtrunA17_Chr8g0354511 25.060 415 249 16 80 466 113 493 2.05e-20 94.7
Msa0070580 MtrunA17_Chr2g0313761 24.694 409 258 13 104 484 120 506 3.96e-20 94.0
Msa0070580 MtrunA17_Chr1g0174481 23.567 471 305 18 9 452 10 452 1.12e-19 92.4
Msa0070580 MtrunA17_Chr8g0388921 23.293 498 301 20 1 467 1 448 1.50e-19 91.7
Msa0070580 MtrunA17_Chr4g0004601 22.906 406 268 12 81 468 124 502 1.86e-19 92.0
Msa0070580 MtrunA17_Chr2g0310381 22.669 472 326 16 6 461 3 451 2.82e-19 91.3
Msa0070580 MtrunA17_Chr8g0362731 25.000 388 269 11 87 467 6 378 3.06e-19 90.1
Msa0070580 MtrunA17_Chr8g0357121 43.878 98 50 1 367 464 25 117 3.31e-19 84.3
Msa0070580 MtrunA17_Chr2g0308951 37.113 97 60 1 153 249 4 99 3.42e-19 83.2
Msa0070580 MtrunA17_Chr4g0058231 24.494 494 318 23 8 473 7 473 3.62e-19 90.9
Msa0070580 MtrunA17_Chr8g0390881 24.440 491 315 20 3 466 7 468 4.21e-19 90.5
Msa0070580 MtrunA17_Chr4g0030711 29.050 179 121 4 291 466 304 479 4.88e-19 90.5
Msa0070580 MtrunA17_Chr4g0006871 64.286 70 25 0 495 564 528 597 9.83e-19 90.5
Msa0070580 MtrunA17_Chr4g0030701 28.492 179 122 4 291 466 301 476 1.03e-18 89.4
Msa0070580 MtrunA17_Chr1g0207841 28.507 221 135 8 276 481 287 499 1.53e-18 89.0
Msa0070580 MtrunA17_Chr4g0014051 24.939 409 244 14 110 484 144 523 2.47e-18 88.2
Msa0070580 MtrunA17_Chr8g0354571 22.983 409 263 15 81 466 114 493 2.52e-18 88.2
Msa0070580 MtrunA17_Chr8g0387101 25.234 321 195 9 194 500 218 507 3.06e-18 87.8
Msa0070580 MtrunA17_Chr8g0372711 24.609 447 280 19 23 455 40 443 3.35e-18 87.8
Msa0070580 MtrunA17_Chr1g0164341 39.806 103 56 3 397 499 1 97 3.79e-18 80.1
Msa0070580 MtrunA17_Chr5g0446131 22.983 409 265 14 104 484 123 509 5.07e-18 87.4
Msa0070580 MtrunA17_Chr7g0218611 22.926 458 317 16 25 466 27 464 5.88e-18 87.0
Msa0070580 MtrunA17_Chr6g0484811 21.325 483 339 16 3 466 9 469 5.94e-18 87.0
Msa0070580 MtrunA17_Chr1g0164211 23.982 442 280 13 35 452 35 444 6.41e-18 87.0
Msa0070580 MtrunA17_Chr4g0046321 24.903 257 171 7 229 466 217 470 7.52e-18 86.7
Msa0070580 MtrunA17_Chr7g0224561 23.124 493 325 21 1 466 1 466 8.61e-18 86.7
Msa0070580 MtrunA17_Chr7g0235261 23.559 399 274 13 81 468 103 481 1.00e-17 86.3
Msa0070580 MtrunA17_Chr4g0046351 24.609 256 173 6 229 466 217 470 1.04e-17 86.3
Msa0070580 MtrunA17_Chr4g0046331 24.806 258 172 6 229 466 217 472 1.08e-17 86.3
Msa0070580 MtrunA17_Chr7g0224551 23.482 494 322 22 1 466 1 466 1.27e-17 86.3
Msa0070580 MtrunA17_Chr8g0357111 33.333 159 101 4 35 193 38 191 2.29e-17 80.9
Msa0070580 MtrunA17_Chr5g0395321 22.607 491 331 16 6 479 14 472 2.42e-17 85.1
Msa0070580 MtrunA17_Chr2g0310391 22.669 472 326 16 6 461 3 451 2.60e-17 85.1
Msa0070580 MtrunA17_Chr6g0472221 22.021 386 257 14 100 467 137 496 4.18e-17 84.3
Msa0070580 MtrunA17_Chr6g0451681 28.061 196 129 4 290 477 262 453 4.48e-17 84.3
Msa0070580 MtrunA17_Chr8g0380471 21.605 486 312 17 3 467 10 447 4.49e-17 84.3
Msa0070580 MtrunA17_Chr8g0339331 23.591 479 318 18 26 477 34 491 6.81e-17 84.0
Msa0070580 MtrunA17_Chr5g0419451 22.323 439 289 16 81 496 105 514 8.04e-17 83.6
Msa0070580 MtrunA17_Chr8g0377341 23.270 477 337 14 5 471 41 498 8.51e-17 83.6
Msa0070580 MtrunA17_Chr6g0466941 21.321 530 367 16 4 500 5 517 1.03e-16 83.2
Msa0070580 MtrunA17_Chr2g0280121 24.026 308 200 6 201 500 229 510 1.67e-16 82.4
Msa0070580 MtrunA17_Chr8g0374951 54.286 70 32 0 495 564 136 205 1.87e-16 80.9
Msa0070580 MtrunA17_Chr5g0430081 23.218 491 316 20 6 466 7 466 2.17e-16 82.0
Msa0070580 MtrunA17_Chr2g0313751 23.659 410 261 14 104 484 152 538 2.60e-16 82.0
Msa0070580 MtrunA17_Chr6g0458561 29.744 195 130 4 286 477 314 504 3.85e-16 81.6
Msa0070580 MtrunA17_Chr5g0395381 22.718 471 295 16 6 461 14 430 4.86e-16 80.9
Msa0070580 MtrunA17_Chr8g0364651 27.064 218 150 5 289 500 285 499 5.31e-16 80.9
Msa0070580 MtrunA17_Chr8g0344181 23.799 458 294 20 35 466 42 470 8.89e-16 80.1
Msa0070580 MtrunA17_Chr2g0280081 23.377 308 202 6 201 500 724 1005 1.79e-15 80.1
Msa0070580 MtrunA17_Chr2g0280081 29.189 185 119 3 290 466 290 470 1.03e-14 77.8
Msa0070580 MtrunA17_Chr1g0156101 21.684 475 316 17 25 466 24 475 3.14e-15 78.6
Msa0070580 MtrunA17_Chr7g0255531 22.736 497 306 19 19 478 15 470 3.15e-15 78.6
Msa0070580 MtrunA17_Chr7g0246221 20.635 504 349 14 1 479 1 478 3.27e-15 78.6
Msa0070580 MtrunA17_Chr7g0218601 22.774 483 330 20 17 479 15 474 3.35e-15 78.6
Msa0070580 MtrunA17_Chr4g0008101 21.915 543 365 19 3 509 13 532 6.22e-15 77.8
Msa0070580 MtrunA17_Chr5g0430131 22.086 489 319 19 8 466 11 467 7.44e-15 77.4
Msa0070580 MtrunA17_Chr4g0046681 28.641 206 138 4 299 500 30 230 7.46e-15 74.3
Msa0070580 MtrunA17_Chr5g0403351 22.105 475 295 16 9 447 13 448 8.67e-15 77.0
Msa0070580 MtrunA17_Chr8g0351801 28.649 185 118 5 290 466 304 482 9.13e-15 77.0
Msa0070580 MtrunA17_Chr8g0382901 23.044 473 307 17 5 461 2 433 1.11e-14 77.4
Msa0070580 MtrunA17_Chr8g0382901 21.304 460 326 17 15 461 476 912 3.74e-13 72.8
Msa0070580 MtrunA17_Chr3g0116681 23.348 454 304 13 10 445 19 446 1.92e-14 76.3
Msa0070580 MtrunA17_Chr1g0193811 21.088 441 292 12 81 497 106 514 2.06e-14 75.9
Msa0070580 MtrunA17_Chr6g0484841 22.105 475 305 18 18 461 22 462 2.12e-14 75.9
Msa0070580 MtrunA17_Chr1g0162811 20.378 476 305 16 25 466 29 464 2.37e-14 75.9
Msa0070580 MtrunA17_Chr8g0344151 22.678 463 293 17 35 466 40 468 2.46e-14 75.9
Msa0070580 MtrunA17_Chr8g0357281 50.000 70 35 0 495 564 146 215 3.31e-14 75.9
Msa0070580 MtrunA17_Chr5g0430071 25.000 204 134 6 276 466 124 321 3.63e-14 74.3
Msa0070580 MtrunA17_Chr4g0011901 22.993 461 323 18 20 466 18 460 3.73e-14 75.1
Msa0070580 MtrunA17_Chr8g0339311 24.309 362 242 11 123 461 135 487 6.64e-14 74.3
Msa0070580 MtrunA17_Chr5g0409051 26.667 210 143 6 266 467 270 476 6.78e-14 74.3
Msa0070580 MtrunA17_Chr5g0430101 21.951 492 321 18 5 466 7 465 7.31e-14 74.3
Msa0070580 MtrunA17_Chr5g0430091 23.061 490 320 20 5 466 8 468 7.97e-14 73.9
Msa0070580 MtrunA17_Chr1g0154731 22.749 422 259 18 81 475 102 483 9.64e-14 73.9
Msa0070580 MtrunA17_Chr4g0047661 21.834 458 307 17 17 447 29 462 1.08e-13 73.6
Msa0070580 MtrunA17_Chr5g0431641 24.313 473 296 20 11 452 7 448 1.31e-13 73.6
Msa0070580 MtrunA17_Chr5g0402981 25.773 194 136 4 311 500 3 192 1.41e-13 69.7
Msa0070580 MtrunA17_Chr5g0401681 21.245 466 307 15 11 451 12 442 1.43e-13 73.2
Msa0070580 MtrunA17_Chr8g0344191 24.898 490 304 23 5 466 49 502 1.50e-13 73.6
Msa0070580 MtrunA17_Chr6g0451641 25.862 232 151 8 259 477 270 493 1.67e-13 73.2
Msa0070580 MtrunA17_Chr7g0254641 21.368 468 308 17 25 458 33 474 1.86e-13 73.2
Msa0070580 MtrunA17_Chr8g0364081 21.266 395 259 10 104 466 136 510 2.72e-13 72.4
Msa0070580 MtrunA17_Chr6g0451781 23.507 268 184 8 223 477 274 533 2.91e-13 72.4
Msa0070580 MtrunA17_Chr2g0332521 51.429 70 34 0 495 564 97 166 4.03e-13 72.4
Msa0070580 MtrunA17_Chr3g0116741 21.231 471 316 18 5 452 25 463 4.37e-13 72.0
Msa0070580 MtrunA17_Chr8g0390871 23.757 181 129 4 289 466 16 190 5.68e-13 68.9
Msa0070580 MtrunA17_Chr5g0430031 22.065 494 320 21 5 466 8 468 5.87e-13 71.2
Msa0070580 MtrunA17_Chr8g0362481 22.750 400 259 16 81 452 11 388 5.88e-13 71.2
Msa0070580 MtrunA17_Chr4g0052861 21.895 475 309 16 6 452 3 443 5.93e-13 71.2
Msa0070580 MtrunA17_Chr3g0101691 23.819 487 294 24 1 447 1 450 6.21e-13 71.2
Msa0070580 MtrunA17_Chr3g0094231 21.032 504 329 21 22 494 27 492 6.84e-13 71.2
Msa0070580 MtrunA17_Chr4g0058211 26.804 194 129 6 291 477 7 194 1.08e-12 67.8
Msa0070580 MtrunA17_Chr4g0011851 26.554 177 121 4 293 466 9 179 1.17e-12 67.4
Msa0070580 MtrunA17_Chr4g0044851 23.150 419 240 17 76 467 78 441 1.18e-12 70.5
Msa0070580 MtrunA17_Chr4g0047631 23.077 494 315 23 5 466 16 476 3.76e-12 68.9
Msa0070580 MtrunA17_Chr5g0445531 22.384 411 283 14 71 466 74 463 4.38e-12 68.6
Msa0070580 MtrunA17_Chr5g0445461 21.477 447 312 16 35 466 42 464 5.01e-12 68.6
Msa0070580 MtrunA17_Chr3g0101701 24.008 479 303 19 1 447 1 450 5.27e-12 68.6
Msa0070580 MtrunA17_Chr5g0403331 29.167 192 118 7 264 447 268 449 6.63e-12 68.2
Msa0070580 MtrunA17_Chr5g0445441 21.065 432 289 17 45 451 86 490 8.05e-12 67.8
Msa0070580 MtrunA17_Chr2g0280041 25.664 226 142 7 290 500 322 536 8.60e-12 67.8
Msa0070580 MtrunA17_Chr3g0082701 24.739 287 188 10 209 477 225 501 9.48e-12 67.8
Msa0070580 MtrunA17_Chr1g0164331 35.955 89 53 1 375 463 3 87 1.02e-11 63.2
Msa0070580 MtrunA17_Chr3g0101611 20.287 488 344 14 1 466 3 467 1.04e-11 67.4
Msa0070580 MtrunA17_Chr2g0314721 26.512 215 143 6 260 466 264 471 1.05e-11 67.4
Msa0070580 MtrunA17_Chr4g0039901 25.000 232 156 5 240 459 235 460 1.21e-11 67.4
Msa0070580 MtrunA17_Chr4g0052881 21.174 477 323 18 8 463 10 454 1.30e-11 67.0
Msa0070580 MtrunA17_Chr3g0107511 23.142 471 293 18 7 451 5 432 1.35e-11 67.0
Msa0070580 MtrunA17_Chr5g0406651 22.870 446 312 18 35 466 34 461 1.41e-11 67.0
Msa0070580 MtrunA17_Chr5g0446151 22.993 461 295 20 17 451 24 450 2.07e-11 66.6
Msa0070580 MtrunA17_Chr8g0372251 25.532 235 139 8 240 449 229 452 2.09e-11 66.6
Msa0070580 MtrunA17_Chr6g0451771 24.468 188 135 4 293 477 15 198 2.16e-11 63.9
Msa0070580 MtrunA17_Chr4g0017411 21.267 442 315 10 20 455 20 434 3.87e-11 65.5
Msa0070580 MtrunA17_Chr3g0135841 24.303 251 166 7 244 480 279 519 3.93e-11 65.9
Msa0070580 MtrunA17_Chr2g0296651 21.586 227 159 6 242 463 241 453 4.61e-11 65.5
Msa0070580 MtrunA17_Chr3g0086651 24.713 174 126 3 296 466 299 470 4.84e-11 65.5
Msa0070580 MtrunA17_Chr5g0445381 21.577 482 330 17 5 466 42 495 5.89e-11 65.1
Msa0070580 MtrunA17_Chr3g0141801 22.963 270 166 10 247 496 234 481 7.36e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070580 AT5G63450.1 45.783 498 257 8 6 499 14 502 3.09e-145 429
Msa0070580 AT5G63450.2 45.783 498 257 8 6 499 72 560 2.13e-144 429
Msa0070580 AT3G48520.1 46.200 500 259 7 6 499 4 499 2.25e-144 426
Msa0070580 AT3G56630.1 45.359 474 240 8 37 499 33 498 1.36e-138 411
Msa0070580 AT1G34540.1 44.093 474 245 8 37 499 33 497 6.52e-135 402
Msa0070580 AT3G01900.1 43.129 473 253 8 32 499 29 490 5.95e-129 387
Msa0070580 AT2G27690.1 44.323 458 236 6 50 499 48 494 6.71e-129 386
Msa0070580 AT5G08250.2 40.074 539 268 17 4 504 24 545 4.01e-116 355
Msa0070580 AT4G00360.1 39.286 504 273 12 35 513 30 525 5.98e-116 355
Msa0070580 AT5G08250.1 40.927 496 248 14 38 504 4 483 2.83e-115 351
Msa0070580 AT2G45970.1 37.618 529 295 13 4 508 2 519 9.63e-113 346
Msa0070580 AT5G23190.1 39.648 512 271 15 19 504 46 545 1.06e-112 347
Msa0070580 AT1G24540.1 39.010 505 272 10 20 499 27 520 1.19e-111 343
Msa0070580 AT1G63710.1 37.624 505 280 12 35 515 30 523 1.91e-110 340
Msa0070580 AT1G01600.1 38.812 505 272 13 35 511 30 525 1.96e-110 341
Msa0070580 AT5G58860.1 38.306 496 259 12 33 499 31 508 3.49e-103 321
Msa0070580 AT1G13140.1 39.069 494 261 14 39 503 46 528 4.50e-101 316
Msa0070580 AT3G26125.1 38.735 506 266 12 35 507 46 540 1.94e-100 315
Msa0070580 AT1G13150.1 36.842 494 276 11 35 503 39 521 2.33e-98 309
Msa0070580 AT1G69500.1 37.378 511 253 14 10 470 5 498 1.36e-97 306
Msa0070580 AT1G13140.2 37.603 484 256 14 39 503 46 502 1.11e-93 296
Msa0070580 AT2G21910.1 33.603 494 296 12 29 501 26 508 4.32e-93 295
Msa0070580 AT1G65340.1 34.549 466 280 10 29 478 28 484 4.48e-90 286
Msa0070580 AT1G47620.1 34.483 522 302 13 4 499 8 515 4.66e-90 287
Msa0070580 AT4G39490.1 32.890 526 305 11 11 501 6 518 7.48e-90 286
Msa0070580 AT2G44890.1 37.684 475 258 14 39 491 42 500 1.98e-89 285
Msa0070580 AT2G45510.1 35.756 509 283 14 5 491 14 500 5.33e-89 284
Msa0070580 AT2G44890.2 36.842 475 246 14 39 492 42 483 3.86e-87 278
Msa0070580 AT4G39480.1 34.664 476 275 11 53 502 51 516 1.63e-86 278
Msa0070580 AT2G23180.1 32.824 524 305 16 4 499 8 512 2.22e-85 275
Msa0070580 AT1G57750.1 33.333 510 304 14 7 500 8 497 1.60e-84 272
Msa0070580 AT5G52320.1 32.298 483 305 9 29 498 28 501 4.14e-84 271
Msa0070580 AT5G52320.2 32.759 464 290 9 29 479 28 482 1.29e-83 270
Msa0070580 AT4G32170.1 33.074 514 315 12 7 502 4 506 3.18e-83 269
Msa0070580 AT4G39500.2 33.333 516 308 13 7 499 14 516 7.12e-83 268
Msa0070580 AT4G39510.1 32.364 516 318 12 7 502 4 508 1.16e-81 265
Msa0070580 AT4G39500.1 34.183 471 275 12 51 499 9 466 4.77e-79 256
Msa0070580 AT1G57750.2 33.178 428 264 9 7 422 8 425 8.86e-73 239
Msa0070580 AT5G02900.1 30.390 487 277 12 6 468 1 449 9.89e-68 227
Msa0070580 AT3G53130.1 26.343 391 255 13 81 454 122 496 3.77e-28 119
Msa0070580 AT2G46660.1 23.840 474 333 17 35 499 74 528 2.96e-25 110
Msa0070580 AT3G48300.1 26.782 463 286 19 26 466 19 450 2.91e-24 106
Msa0070580 AT3G48300.2 26.782 463 286 19 26 466 21 452 2.95e-24 106
Msa0070580 AT1G31800.1 25.490 408 270 16 76 466 147 537 7.26e-24 106
Msa0070580 AT5G24900.1 25.500 400 262 11 85 466 115 496 1.86e-22 101
Msa0070580 AT5G24900.2 25.441 397 260 11 88 466 1 379 4.20e-22 99.4
Msa0070580 AT3G14640.2 23.025 443 265 16 80 484 127 531 4.75e-22 100
Msa0070580 AT3G14640.1 23.025 443 265 16 80 484 105 509 4.83e-22 100
Msa0070580 AT4G13290.1 25.891 421 282 14 35 447 37 435 7.13e-22 99.4
Msa0070580 AT1G01190.1 23.028 469 322 14 19 473 61 504 2.02e-21 98.6
Msa0070580 AT1G01190.2 23.028 469 322 14 19 473 66 509 2.73e-21 98.2
Msa0070580 AT4G13310.1 26.196 439 288 19 23 447 26 442 4.39e-21 97.1
Msa0070580 AT3G14620.1 23.434 431 285 15 52 466 83 484 1.83e-20 95.5
Msa0070580 AT5G52400.1 23.421 380 256 11 100 468 135 490 2.51e-20 94.7
Msa0070580 AT2G26710.1 26.341 410 255 12 76 466 103 484 3.27e-20 94.7
Msa0070580 AT2G46950.1 22.887 485 307 13 35 497 129 568 3.61e-20 94.7
Msa0070580 AT3G48280.1 25.658 456 296 19 6 445 3 431 6.40e-20 93.6
Msa0070580 AT4G27710.1 23.899 477 308 17 35 494 74 512 6.45e-20 93.6
Msa0070580 AT3G48310.1 24.711 433 285 17 26 445 28 432 9.85e-20 92.8
Msa0070580 AT5G24910.1 23.704 405 264 11 85 466 119 501 1.17e-19 92.8
Msa0070580 AT3G14680.1 24.664 446 261 17 76 484 100 507 1.25e-19 92.8
Msa0070580 AT3G48270.1 22.944 462 300 18 25 466 27 452 2.68e-19 91.7
Msa0070580 AT3G61880.1 22.052 458 335 15 25 474 60 503 6.04e-19 90.9
Msa0070580 AT5G24950.1 25.164 457 285 18 35 466 36 460 7.15e-19 90.1
Msa0070580 AT3G61880.2 21.861 462 339 15 21 474 56 503 1.32e-18 89.7
Msa0070580 AT4G13770.1 23.062 529 356 22 4 511 3 501 2.58e-18 88.6
Msa0070580 AT3G14630.1 23.380 432 267 17 61 466 84 477 3.37e-18 88.2
Msa0070580 AT3G14630.2 23.380 432 267 17 61 466 139 532 4.69e-18 88.2
Msa0070580 AT3G61040.1 30.213 235 144 7 245 466 233 460 1.48e-17 86.3
Msa0070580 AT5G36110.1 27.706 231 149 5 244 467 227 446 1.75e-17 85.9
Msa0070580 AT3G14660.1 23.874 444 266 16 53 466 80 481 2.44e-17 85.5
Msa0070580 AT3G14690.2 26.303 422 240 17 76 466 135 516 2.77e-17 85.5
Msa0070580 AT3G14690.1 26.303 422 240 17 76 466 100 481 3.26e-17 85.1
Msa0070580 AT5G42590.1 25.364 481 313 16 1 459 1 457 6.18e-17 84.3
Msa0070580 AT5G05260.2 21.660 494 332 18 6 461 11 487 1.89e-16 82.8
Msa0070580 AT4G37330.1 23.026 456 315 17 6 451 8 437 1.91e-16 82.8
Msa0070580 AT4G37320.1 21.704 493 291 15 6 459 8 444 2.98e-16 82.0
Msa0070580 AT3G14660.2 27.917 240 143 9 243 466 110 335 6.88e-16 80.1
Msa0070580 AT3G28740.1 25.217 345 215 12 123 451 131 448 8.64e-16 80.9
Msa0070580 AT1G64930.1 26.776 183 127 3 289 467 297 476 1.04e-15 80.5
Msa0070580 AT2G42850.1 27.542 236 143 7 226 451 221 438 1.31e-15 80.1
Msa0070580 AT1G13710.1 22.682 507 327 20 7 489 31 496 2.03e-15 79.7
Msa0070580 AT5G38450.1 23.514 370 244 10 113 466 139 485 2.05e-15 79.7
Msa0070580 AT2G46960.2 21.839 435 297 14 81 497 106 515 2.41e-15 79.3
Msa0070580 AT3G25180.1 25.188 266 178 7 223 477 229 484 3.06e-15 79.0
Msa0070580 AT2G46960.1 23.058 399 264 14 117 497 26 399 3.27e-15 78.2
Msa0070580 AT3G26210.1 24.181 397 251 18 81 451 77 449 4.72e-15 78.6
Msa0070580 AT2G42250.1 29.891 184 115 6 290 466 301 477 5.04e-15 78.2
Msa0070580 AT1G64940.1 28.804 184 118 4 289 466 299 475 5.70e-15 78.2
Msa0070580 AT1G67110.1 22.251 391 266 9 88 466 115 479 2.02e-14 76.6
Msa0070580 AT2G30770.1 21.946 442 289 16 35 452 37 446 3.00e-14 75.9
Msa0070580 AT3G48290.1 21.822 472 292 19 26 466 29 454 3.19e-14 75.9
Msa0070580 AT3G26230.1 21.905 525 342 16 7 496 1 492 3.47e-14 75.5
Msa0070580 AT1G11600.1 23.853 218 162 2 285 499 293 509 3.85e-14 75.5
Msa0070580 AT5G05260.1 21.516 488 308 19 6 461 11 455 5.15e-14 75.1
Msa0070580 AT4G39950.1 22.462 463 298 18 35 461 60 497 1.14e-13 74.3
Msa0070580 AT1G64950.1 27.473 182 123 3 289 466 298 474 1.16e-13 73.9
Msa0070580 AT3G48320.1 25.214 468 291 21 1 445 1 432 1.18e-13 73.9
Msa0070580 AT4G39950.2 22.462 463 298 18 35 461 100 537 1.35e-13 73.9
Msa0070580 AT1G13080.1 22.062 485 330 16 6 466 5 465 1.76e-13 73.6
Msa0070580 AT5G57260.1 20.690 464 325 15 24 466 23 464 2.17e-13 73.2
Msa0070580 AT3G26280.1 22.737 453 313 16 19 451 17 452 2.72e-13 72.8
Msa0070580 AT3G26280.2 22.737 453 313 16 19 451 34 469 2.79e-13 72.8
Msa0070580 AT3G48290.2 29.878 164 107 4 306 466 322 480 4.14e-13 72.4
Msa0070580 AT2G25160.1 26.877 253 155 9 233 466 238 479 5.45e-13 72.0
Msa0070580 AT3G03470.1 22.936 218 159 3 290 499 293 509 1.43e-12 70.5
Msa0070580 AT1G75130.1 21.918 438 277 18 76 484 97 498 1.46e-12 70.5
Msa0070580 AT5G57220.1 21.909 461 316 15 16 459 14 447 2.43e-12 69.7
Msa0070580 AT2G45550.1 24.180 244 165 7 236 466 235 471 2.64e-12 69.7
Msa0070580 AT1G11680.1 23.841 302 208 9 212 502 198 488 2.83e-12 69.7
Msa0070580 AT5G36220.1 21.399 486 302 16 4 451 3 446 3.64e-12 69.3
Msa0070580 AT2G23190.1 23.173 479 309 18 7 463 54 495 3.69e-12 69.3
Msa0070580 AT4G31940.1 22.468 316 202 10 206 485 195 503 3.72e-12 69.3
Msa0070580 AT4G37430.1 23.142 471 318 18 10 459 9 456 5.24e-12 68.9
Msa0070580 AT2G12190.1 25.824 182 128 3 289 466 298 476 5.53e-12 68.9
Msa0070580 AT3G26300.1 21.538 455 315 15 10 445 9 440 6.09e-12 68.6
Msa0070580 AT3G10560.1 20.755 530 355 17 9 508 19 513 7.67e-12 68.2
Msa0070580 AT5G24960.1 24.229 454 293 19 24 455 28 452 9.21e-12 68.2
Msa0070580 AT3G26310.1 22.026 454 313 17 10 445 9 439 9.77e-12 67.8
Msa0070580 AT1G66540.2 25.112 223 146 6 242 459 66 272 1.22e-11 66.6
Msa0070580 AT2G45570.1 28.016 257 152 12 228 466 231 472 1.34e-11 67.4
Msa0070580 AT5G06905.1 22.555 501 320 19 5 466 4 475 1.34e-11 67.4
Msa0070580 AT2G22330.2 22.026 454 311 19 35 461 85 522 1.65e-11 67.4
Msa0070580 AT2G29090.3 28.947 190 115 5 285 467 182 358 1.66e-11 66.6
Msa0070580 AT2G22330.1 22.026 454 311 19 35 461 62 499 1.73e-11 67.4
Msa0070580 AT1G66540.1 25.112 223 146 6 242 459 125 331 1.99e-11 66.6
Msa0070580 AT2G14100.1 24.038 208 143 6 255 453 260 461 2.59e-11 66.6
Msa0070580 AT2G29090.2 28.571 217 125 6 285 494 277 470 2.98e-11 66.2
Msa0070580 AT2G29090.1 28.571 217 125 6 285 494 277 470 2.98e-11 66.2
Msa0070580 AT4G15360.1 21.304 460 327 15 9 451 16 457 3.05e-11 66.6
Msa0070580 AT4G37400.1 22.004 459 316 15 19 459 19 453 3.74e-11 66.2
Msa0070580 AT1G73340.1 20.086 463 309 17 12 455 20 440 3.93e-11 65.9
Msa0070580 AT4G31970.1 22.222 252 178 7 240 477 247 494 4.08e-11 65.9

Find 148 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGATTGTGGAGGGTGTTT+TGG 0.202962 1_2:+41211821 None:intergenic
TTGGCATTATGAGGGAGTTT+AGG 0.239922 1_2:-41210525 Msa0070580:CDS
CTTGTTACGCAACATGTTTA+TGG 0.248871 1_2:+41209506 None:intergenic
CCACGGTTTCCACGAATTTA+CGG 0.254826 1_2:+41211478 None:intergenic
TGGGAAGGTCTGAGAAAATA+TGG 0.259141 1_2:-41210714 Msa0070580:CDS
CTGCACTCACGTGGTTCTTT+TGG 0.262457 1_2:-41210975 Msa0070580:CDS
ACGCTGCTATTCCATTTCTA+TGG 0.266706 1_2:-41211233 Msa0070580:CDS
ATGCGCTTCTCGATCTTTAC+TGG 0.272119 1_2:+41210427 None:intergenic
TGGCATTATGAGGGAGTTTA+GGG 0.295858 1_2:-41210524 Msa0070580:CDS
GTGATAAGCTTTATTCTTGC+TGG 0.302739 1_2:-41211015 Msa0070580:CDS
AAGAAAGAAACCAATGTTTC+GGG 0.307188 1_2:+41211897 None:intergenic
TGGAGAATATCTTGAAAATC+AGG 0.314859 1_2:+41211387 None:intergenic
GGAAATCTAGCTATCGAAAT+TGG 0.320350 1_2:-41209474 Msa0070580:CDS
TTACGATGAGGTGAAGGATA+TGG 0.331983 1_2:-41210881 Msa0070580:CDS
AATATTTGCATAATCGCATT+TGG 0.332716 1_2:-41211348 Msa0070580:CDS
CTGGGCCGAGGGTGTGTTTA+GGG 0.335396 1_2:-41210585 Msa0070580:CDS
GTCGAGCTGACGATGGAAAA+TGG 0.339965 1_2:-41210651 Msa0070580:CDS
GCTGGGCCGAGGGTGTGTTT+AGG 0.340311 1_2:-41210586 Msa0070580:CDS
ATCAAAGAAGATTCATGAAA+TGG 0.349477 1_2:-41209566 Msa0070580:CDS
GGGATTTAGTGTTGAATTCA+TGG 0.351461 1_2:+41211502 None:intergenic
GCTTTCACAAAAGCGATTTC+CGG 0.352098 1_2:+41211294 None:intergenic
AGGTGGAGGAAGGGATAGTT+TGG 0.353372 1_2:+41211718 None:intergenic
TAAGAAAGAAACCAATGTTT+CGG 0.355306 1_2:+41211896 None:intergenic
CACCTTTCATTATTGAAGTA+AGG 0.357913 1_2:+41210455 None:intergenic
CGATCCCTCTTCGAGTTTCT+CGG 0.365393 1_2:-41211582 Msa0070580:CDS
GAAAATCAGGGAGGATCATT+TGG 0.367747 1_2:+41211400 None:intergenic
TCCTTGGCATCCACCGGAAC+TGG 0.375599 1_2:+41210814 None:intergenic
GGTTGGTTGTTGGCATTATG+AGG 0.376144 1_2:-41210534 Msa0070580:CDS
GTATCTCCTCCCTTCTCTTC+CGG 0.377236 1_2:-41211313 Msa0070580:CDS
AGGAGCCGAAGGGGCGGTGG+AGG 0.391442 1_2:+41211691 None:intergenic
AATGGATCCTTATACTTATC+CGG 0.392782 1_2:-41210617 Msa0070580:CDS
CCAATGATAGGGTACGAGTT+GGG 0.411746 1_2:+41211801 None:intergenic
GATGGAAAATGGAGCTTTGT+TGG 0.421609 1_2:-41210640 Msa0070580:CDS
ATGTTGCGTAACAAGTCTTA+TGG 0.421762 1_2:-41209498 Msa0070580:CDS
GTCGCTCGGTTCCAATGTTT+AGG 0.423710 1_2:+41211196 None:intergenic
AGCAGGAGCCGAAGGGGCGG+TGG 0.424339 1_2:+41211688 None:intergenic
TTCTTCACTAATGTTCCATC+TGG 0.425736 1_2:+41210769 None:intergenic
GGAAACACAGAACCAATGAT+AGG 0.426161 1_2:+41211789 None:intergenic
TTTGTCCTCCACCGCCCCTT+CGG 0.430781 1_2:-41211696 Msa0070580:CDS
TTGGAAGCTTCATGGAGAAT+AGG 0.435384 1_2:+41211426 None:intergenic
GGCTTCTTTCAACCGTCGCT+CGG 0.437548 1_2:+41211182 None:intergenic
GCGGTGGAAGTTGGCTGCAA+TGG 0.444537 1_2:+41211767 None:intergenic
GGGAAGGTCTGAGAAAATAT+GGG 0.449056 1_2:-41210713 Msa0070580:CDS
GAAAATATGGGGATCCGATT+GGG 0.454172 1_2:-41210701 Msa0070580:CDS
AGGGTACGAGTTGGGGATTG+TGG 0.461417 1_2:+41211809 None:intergenic
AGAAAATATGGGGATCCGAT+TGG 0.462705 1_2:-41210702 Msa0070580:CDS
ATCATCGTAGGCTGCTTCCT+TGG 0.463298 1_2:+41210798 None:intergenic
TGATAAGCTTTATTCTTGCT+GGG 0.466948 1_2:-41211014 Msa0070580:CDS
TGCGTATCATGTATATGCTA+TGG 0.467152 1_2:-41210734 Msa0070580:CDS
GGGGCGGTGGAGGACAAAGG+TGG 0.470072 1_2:+41211701 None:intergenic
CCCAACTCGTACCCTATCAT+TGG 0.471434 1_2:-41211801 Msa0070580:CDS
GAGATTGTATCCTCCAGTTC+CGG 0.471458 1_2:-41210827 Msa0070580:CDS
GCGGTGGAGGACAAAGGTGG+AGG 0.473309 1_2:+41211704 None:intergenic
CGGTGGAAGTTGGCTGCAAT+GGG 0.476303 1_2:+41211768 None:intergenic
GTGCTTCCAGCGATGGATGA+AGG 0.478116 1_2:-41210502 Msa0070580:CDS
TAAATCCCTCCGTAAATTCG+TGG 0.478521 1_2:-41211487 Msa0070580:CDS
GATGGAACATTAGTGAAGAA+AGG 0.482838 1_2:-41210766 Msa0070580:CDS
AGAATGTGTTGCACCACGGC+AGG 0.484109 1_2:+41211648 None:intergenic
CAGATGAAGAGGTTGGTTGT+TGG 0.484411 1_2:-41210544 Msa0070580:CDS
GTTTAGGGTGCTTCCAGCGA+TGG 0.488226 1_2:-41210509 Msa0070580:CDS
GAAGCCGTCGCTGAAGTAAG+AGG 0.493725 1_2:-41211165 Msa0070580:CDS
ACTTCCACCGCCTCATACAA+TGG 0.500524 1_2:-41211755 Msa0070580:CDS
GCTCGACTCAACCACCTCTC+AGG 0.503978 1_2:+41210667 None:intergenic
AGGTCGAAACTCAGCCCAAT+CGG 0.504301 1_2:+41210687 None:intergenic
AGAAAAGACAACCTTGGAAT+CGG 0.504350 1_2:-41211100 Msa0070580:CDS
AAAATGGAGCTTTGTTGGAA+TGG 0.504854 1_2:-41210635 Msa0070580:CDS
TGGAGGACAAAGGTGGAGGA+AGG 0.508548 1_2:+41211708 None:intergenic
GTACGAGTTGGGGATTGTGG+AGG 0.510859 1_2:+41211812 None:intergenic
CATGAAATGGAGACAAATCA+AGG 0.512836 1_2:-41209553 Msa0070580:CDS
TGCTTCCAGCGATGGATGAA+GGG 0.514603 1_2:-41210501 Msa0070580:CDS
TACGAGTTGGGGATTGTGGA+GGG 0.515609 1_2:+41211813 None:intergenic
AAGCATTTGATATTATTGAC+TGG 0.516709 1_2:-41209443 Msa0070580:CDS
TCAACACTGACGGTGAAAGT+TGG 0.517905 1_2:-41211548 Msa0070580:CDS
AAATCCATTGTATGAGGCGG+TGG 0.519389 1_2:+41211751 None:intergenic
TCTTTCCCTAAACACACCCT+CGG 0.519430 1_2:+41210580 None:intergenic
CAAAATATCCACCGATTCCA+AGG 0.519645 1_2:+41211089 None:intergenic
TTTGTTGTAGCAAGGGAAGT+TGG 0.522871 1_2:+41211620 None:intergenic
CTCTTCGAGTTTCTCGGTAA+CGG 0.523335 1_2:-41211576 Msa0070580:CDS
GTTGGTTGTTGGCATTATGA+GGG 0.525161 1_2:-41210533 Msa0070580:CDS
AAAGCGATTTCCGGAAGAGA+AGG 0.529810 1_2:+41211303 None:intergenic
ATGGAACATTAGTGAAGAAA+GGG 0.533849 1_2:-41210765 Msa0070580:CDS
CCAAATGGAACCCGAAACAT+TGG 0.536157 1_2:-41211907 None:intergenic
CACCTTACTTCAATAATGAA+AGG 0.538300 1_2:-41210457 Msa0070580:CDS
GATGACTGAGCAGGAGCCGA+AGG 0.540330 1_2:+41211680 None:intergenic
CAATGATAGGGTACGAGTTG+GGG 0.543231 1_2:+41211802 None:intergenic
AATCGCATTTGGATTCGATC+CGG 0.544330 1_2:-41211337 Msa0070580:CDS
GCGTATCATGTATATGCTAT+GGG 0.544791 1_2:-41210733 Msa0070580:CDS
GCTGCTTCCTTGGCATCCAC+CGG 0.546000 1_2:+41210808 None:intergenic
AAGAGGGATCGATGAAATGT+AGG 0.546407 1_2:+41211594 None:intergenic
GTAGGACCTTTGTTGTAGCA+AGG 0.550558 1_2:+41211612 None:intergenic
TCCAGTTCCGGTGGATGCCA+AGG 0.553592 1_2:-41210815 Msa0070580:CDS
TGTCAGAAATCCATTGTATG+AGG 0.557023 1_2:+41211745 None:intergenic
GCTTGAAGAAAAGACAACCT+TGG 0.560057 1_2:-41211106 Msa0070580:CDS
TAGGACCTTTGTTGTAGCAA+GGG 0.561102 1_2:+41211613 None:intergenic
GAAGGGGCGGTGGAGGACAA+AGG 0.561542 1_2:+41211698 None:intergenic
GTAAGGTGTGAATCAAACTC+TGG 0.564216 1_2:+41210472 None:intergenic
TCAACCCCTTCATCCATCGC+TGG 0.566996 1_2:+41210496 None:intergenic
ACCAATGATAGGGTACGAGT+TGG 0.567552 1_2:+41211800 None:intergenic
TTGTATGAGGCGGTGGAAGT+TGG 0.568583 1_2:+41211758 None:intergenic
GTTCTTACAGATGAAGAGGT+TGG 0.568740 1_2:-41210551 Msa0070580:CDS
AGTTAGTTACGATGAGGTGA+AGG 0.569800 1_2:-41210887 Msa0070580:CDS
AACTTCCCTTGCTACAACAA+AGG 0.571997 1_2:-41211618 Msa0070580:CDS
GGAGGACAAAGGTGGAGGAA+GGG 0.572045 1_2:+41211709 None:intergenic
TGGCGTTCTTACAGATGAAG+AGG 0.573982 1_2:-41210555 Msa0070580:CDS
GAACATTAGTGAAGAAAGGG+TGG 0.574370 1_2:-41210762 Msa0070580:CDS
GGAGAATATCTTGAAAATCA+GGG 0.581457 1_2:+41211388 None:intergenic
TATTATCAAACGTAAAACGT+TGG 0.585019 1_2:+41211367 None:intergenic
AAAGACAACCTTGGAATCGG+TGG 0.587007 1_2:-41211097 Msa0070580:CDS
GTTTGCCGTGATGACTGAGC+AGG 0.590226 1_2:+41211671 None:intergenic
CTGAGCAGGAGCCGAAGGGG+CGG 0.594123 1_2:+41211685 None:intergenic
GAATGTGTTGCACCACGGCA+GGG 0.595117 1_2:+41211649 None:intergenic
AGAGAAGGGAGGAGATACTC+CGG 0.603307 1_2:+41211318 None:intergenic
TAAACATTGGAACCGAGCGA+CGG 0.603550 1_2:-41211194 Msa0070580:CDS
CACTGACGGTGAAAGTTGGA+AGG 0.604210 1_2:-41211544 Msa0070580:CDS
GAAACACAGAACCAATGATA+GGG 0.605794 1_2:+41211790 None:intergenic
GGTGTGTTTAGGGAAAGAAA+TGG 0.608381 1_2:-41210575 Msa0070580:CDS
ATGACTGAGCAGGAGCCGAA+GGG 0.610143 1_2:+41211681 None:intergenic
ATCATGTATATGCTATGGGA+AGG 0.611232 1_2:-41210729 Msa0070580:CDS
TTGCGTAACAAGTCTTATGG+TGG 0.612309 1_2:-41209495 Msa0070580:CDS
CTTACTTCAATAATGAAAGG+TGG 0.615026 1_2:-41210454 Msa0070580:CDS
AACGGTATCTTCAACACTGA+CGG 0.618049 1_2:-41211558 Msa0070580:CDS
ATTGTATCCTCCAGTTCCGG+TGG 0.618690 1_2:-41210824 Msa0070580:CDS
CAACTTCAGCTGCACTCACG+TGG 0.619047 1_2:-41210984 Msa0070580:CDS
AAGCGATTTCCGGAAGAGAA+GGG 0.620086 1_2:+41211304 None:intergenic
AAGTCCTCTTACTTCAGCGA+CGG 0.623282 1_2:+41211161 None:intergenic
TTGGCATCCACCGGAACTGG+AGG 0.626326 1_2:+41210817 None:intergenic
CATCACGGCAAACCCTGCCG+TGG 0.626725 1_2:-41211661 Msa0070580:CDS
GCTTCCAGCGATGGATGAAG+GGG 0.630676 1_2:-41210500 Msa0070580:CDS
CGGCTCCTGCTCAGTCATCA+CGG 0.633141 1_2:-41211676 Msa0070580:CDS
TGGTTGAGTCGAGCTGACGA+TGG 0.638987 1_2:-41210658 Msa0070580:CDS
TAAATTCGTGGAAACCGTGG+TGG 0.640023 1_2:-41211475 Msa0070580:CDS
CCGTAAATTCGTGGAAACCG+TGG 0.640774 1_2:-41211478 Msa0070580:CDS
ATCTGGCAAAACATCATCGT+AGG 0.646289 1_2:+41210786 None:intergenic
TGACTGAGCAGGAGCCGAAG+GGG 0.648695 1_2:+41211682 None:intergenic
GGAAGGTCTGAGAAAATATG+GGG 0.648867 1_2:-41210712 Msa0070580:CDS
CTGAGTTTCGACCTGAGAGG+TGG 0.648894 1_2:-41210678 Msa0070580:CDS
CGGTTTCCACGAATTTACGG+AGG 0.653986 1_2:+41211481 None:intergenic
CAGAAATCCATTGTATGAGG+CGG 0.656815 1_2:+41211748 None:intergenic
GGGCTGAGTTTCGACCTGAG+AGG 0.665153 1_2:-41210681 Msa0070580:CDS
GTTACCGAGAAACTCGAAGA+GGG 0.669478 1_2:+41211578 None:intergenic
AATGATAGTTAGTTACGATG+AGG 0.669710 1_2:-41210893 Msa0070580:CDS
GGTTTCCACGAATTTACGGA+GGG 0.675089 1_2:+41211482 None:intergenic
CGATTTCCGGAAGAGAAGGG+AGG 0.683791 1_2:+41211307 None:intergenic
GTTAAGTTCAACATCCACCA+CGG 0.694385 1_2:+41211461 None:intergenic
GCACACGAATCAGCAGCGAG+AGG 0.705897 1_2:-41211260 Msa0070580:CDS
TTTGAGAATGTGTTGCACCA+CGG 0.713899 1_2:+41211644 None:intergenic
CGTTACCGAGAAACTCGAAG+AGG 0.714744 1_2:+41211577 None:intergenic
GAATATCTTGAAAATCAGGG+AGG 0.746007 1_2:+41211391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTACAATATAATGTA+AGG - chr1_2:41210943-41210962 Msa0070580:CDS 15.0%
!!! ATTCATTCATTCATTTTATA+GGG - chr1_2:41211195-41211214 Msa0070580:CDS 15.0%
!!! TTTTACAATATAATGTAAGG+TGG - chr1_2:41210946-41210965 Msa0070580:CDS 20.0%
!!! TTTTAATTTGAATCAGATGT+TGG - chr1_2:41211114-41211133 Msa0070580:CDS 20.0%
!!! CATTCATTCATTCATTTTAT+AGG - chr1_2:41211194-41211213 Msa0070580:CDS 20.0%
!!! TTCATTCATTCATTTTATAG+GGG - chr1_2:41211196-41211215 Msa0070580:CDS 20.0%
!!! AGAATAATGTGTTTTTCTTA+TGG + chr1_2:41211241-41211260 None:intergenic 20.0%
!!! ATTTTTCTTTCAGACATTAT+GGG - chr1_2:41211511-41211530 Msa0070580:CDS 20.0%
!! TTGAATTATTTACATCTAAC+TGG - chr1_2:41211571-41211590 Msa0070580:CDS 20.0%
!! ACAATATTTGCATTCATATT+TGG + chr1_2:41211603-41211622 None:intergenic 20.0%
!!! TTTACAAAATTGTTGCTTAT+AGG - chr1_2:41211705-41211724 Msa0070580:CDS 20.0%
!!! TGATCTTTTGATATAATATC+AGG + chr1_2:41211746-41211765 None:intergenic 20.0%
! TAAGAAAGAAACCAATGTTT+CGG + chr1_2:41209435-41209454 None:intergenic 25.0%
! TATTATCAAACGTAAAACGT+TGG + chr1_2:41209964-41209983 None:intergenic 25.0%
! AATATTTGCATAATCGCATT+TGG - chr1_2:41209980-41209999 Msa0070580:intron 25.0%
!! TTTTTCACTTTCCATAGAAA+TGG + chr1_2:41210109-41210128 None:intergenic 25.0%
! GTGAAAAAATTCCTAAACAT+TGG - chr1_2:41210121-41210140 Msa0070580:intron 25.0%
!! TTCTTTATTTCTTCTATGGA+AGG + chr1_2:41211442-41211461 None:intergenic 25.0%
!! TGCATTCTTTATTTCTTCTA+TGG + chr1_2:41211446-41211465 None:intergenic 25.0%
!! CATTTTTCTTTCAGACATTA+TGG - chr1_2:41211510-41211529 Msa0070580:CDS 25.0%
!!! AGTATCTGCATTTGAAATTT+TGG + chr1_2:41211636-41211655 None:intergenic 25.0%
!! TTGAAATTTTCCATAGCAAT+AGG + chr1_2:41211674-41211693 None:intergenic 25.0%
! ATCAAAGAAGATTCATGAAA+TGG - chr1_2:41211762-41211781 Msa0070580:CDS 25.0%
! AAGCATTTGATATTATTGAC+TGG - chr1_2:41211885-41211904 Msa0070580:CDS 25.0%
AAGAAAGAAACCAATGTTTC+GGG + chr1_2:41209434-41209453 None:intergenic 30.0%
!!! TGTTTTGGATCGTTTTTTTG+TGG + chr1_2:41209495-41209514 None:intergenic 30.0%
GGAGAATATCTTGAAAATCA+GGG + chr1_2:41209943-41209962 None:intergenic 30.0%
TGGAGAATATCTTGAAAATC+AGG + chr1_2:41209944-41209963 None:intergenic 30.0%
ACTTGCCACAAAAATTGTTA+GGG - chr1_2:41210186-41210205 Msa0070580:intron 30.0%
! CTTTTCCCTAACAATTTTTG+TGG + chr1_2:41210194-41210213 None:intergenic 30.0%
!! TGATAAGCTTTATTCTTGCT+GGG - chr1_2:41210314-41210333 Msa0070580:intron 30.0%
AATGATAGTTAGTTACGATG+AGG - chr1_2:41210435-41210454 Msa0070580:CDS 30.0%
ATGGAACATTAGTGAAGAAA+GGG - chr1_2:41210563-41210582 Msa0070580:CDS 30.0%
AATGGATCCTTATACTTATC+CGG - chr1_2:41210711-41210730 Msa0070580:CDS 30.0%
TGAAAAACCGGATAAGTATA+AGG + chr1_2:41210721-41210740 None:intergenic 30.0%
CACCTTACTTCAATAATGAA+AGG - chr1_2:41210871-41210890 Msa0070580:CDS 30.0%
CACCTTTCATTATTGAAGTA+AGG + chr1_2:41210876-41210895 None:intergenic 30.0%
CTTACTTCAATAATGAAAGG+TGG - chr1_2:41210874-41210893 Msa0070580:CDS 30.0%
! TCCTTTTCTTGTCTCAATTA+AGG - chr1_2:41211020-41211039 Msa0070580:CDS 30.0%
TCCTTAATTGAGACAAGAAA+AGG + chr1_2:41211024-41211043 None:intergenic 30.0%
AATGATGTGCATGACAATAT+GGG - chr1_2:41211353-41211372 Msa0070580:CDS 30.0%
GTCATTCCATCTTTAGTAAA+TGG - chr1_2:41211388-41211407 Msa0070580:CDS 30.0%
GTAGTACCATTTACTAAAGA+TGG + chr1_2:41211397-41211416 None:intergenic 30.0%
TCAGTTTATACCTATTGCTA+TGG - chr1_2:41211661-41211680 Msa0070580:CDS 30.0%
GAAACACAGAACCAATGATA+GGG + chr1_2:41209541-41209560 None:intergenic 35.0%
TGTCAGAAATCCATTGTATG+AGG + chr1_2:41209586-41209605 None:intergenic 35.0%
! GGGATTTAGTGTTGAATTCA+TGG + chr1_2:41209829-41209848 None:intergenic 35.0%
!!! TTTGGTTTTTGGAAGCTTCA+TGG + chr1_2:41209913-41209932 None:intergenic 35.0%
GAATATCTTGAAAATCAGGG+AGG + chr1_2:41209940-41209959 None:intergenic 35.0%
GACTTGCCACAAAAATTGTT+AGG - chr1_2:41210185-41210204 Msa0070580:intron 35.0%
AGAAAAGACAACCTTGGAAT+CGG - chr1_2:41210228-41210247 Msa0070580:intron 35.0%
!!! TTGTCGCGATTTTTAAGTTC+TGG - chr1_2:41210259-41210278 Msa0070580:intron 35.0%
!! GTGATAAGCTTTATTCTTGC+TGG - chr1_2:41210313-41210332 Msa0070580:intron 35.0%
TTCTTCACTAATGTTCCATC+TGG + chr1_2:41210562-41210581 None:intergenic 35.0%
GATGGAACATTAGTGAAGAA+AGG - chr1_2:41210562-41210581 Msa0070580:CDS 35.0%
TGCGTATCATGTATATGCTA+TGG - chr1_2:41210594-41210613 Msa0070580:CDS 35.0%
GCGTATCATGTATATGCTAT+GGG - chr1_2:41210595-41210614 Msa0070580:CDS 35.0%
ATCATGTATATGCTATGGGA+AGG - chr1_2:41210599-41210618 Msa0070580:CDS 35.0%
!! AAAATGGAGCTTTGTTGGAA+TGG - chr1_2:41210693-41210712 Msa0070580:CDS 35.0%
GGTACTAAATGATCGTAATG+AGG - chr1_2:41211143-41211162 Msa0070580:CDS 35.0%
TTCTTTGTCTCTTGTCTGTT+CGG - chr1_2:41211316-41211335 Msa0070580:CDS 35.0%
CAATGATGTGCATGACAATA+TGG - chr1_2:41211352-41211371 Msa0070580:CDS 35.0%
TGTTCTCAATGAGTAGAGAT+GGG - chr1_2:41211467-41211486 Msa0070580:CDS 35.0%
CATGAAATGGAGACAAATCA+AGG - chr1_2:41211775-41211794 Msa0070580:CDS 35.0%
CTTGTTACGCAACATGTTTA+TGG + chr1_2:41211825-41211844 None:intergenic 35.0%
ATGTTGCGTAACAAGTCTTA+TGG - chr1_2:41211830-41211849 Msa0070580:CDS 35.0%
GGAAATCTAGCTATCGAAAT+TGG - chr1_2:41211854-41211873 Msa0070580:CDS 35.0%
GGAAACACAGAACCAATGAT+AGG + chr1_2:41209542-41209561 None:intergenic 40.0%
CAGAAATCCATTGTATGAGG+CGG + chr1_2:41209583-41209602 None:intergenic 40.0%
TTTGAGAATGTGTTGCACCA+CGG + chr1_2:41209687-41209706 None:intergenic 40.0%
! TTTGTTGTAGCAAGGGAAGT+TGG + chr1_2:41209711-41209730 None:intergenic 40.0%
AACTTCCCTTGCTACAACAA+AGG - chr1_2:41209710-41209729 Msa0070580:intron 40.0%
! TAGGACCTTTGTTGTAGCAA+GGG + chr1_2:41209718-41209737 None:intergenic 40.0%
AAGAGGGATCGATGAAATGT+AGG + chr1_2:41209737-41209756 None:intergenic 40.0%
AACGGTATCTTCAACACTGA+CGG - chr1_2:41209770-41209789 Msa0070580:intron 40.0%
TAAATCCCTCCGTAAATTCG+TGG - chr1_2:41209841-41209860 Msa0070580:intron 40.0%
GTTAAGTTCAACATCCACCA+CGG + chr1_2:41209870-41209889 None:intergenic 40.0%
TTGGAAGCTTCATGGAGAAT+AGG + chr1_2:41209905-41209924 None:intergenic 40.0%
!!! AGGGAGGATCATTTGGTTTT+TGG + chr1_2:41209924-41209943 None:intergenic 40.0%
GAAAATCAGGGAGGATCATT+TGG + chr1_2:41209931-41209950 None:intergenic 40.0%
AATCGCATTTGGATTCGATC+CGG - chr1_2:41209991-41210010 Msa0070580:intron 40.0%
GCTTTCACAAAAGCGATTTC+CGG + chr1_2:41210037-41210056 None:intergenic 40.0%
ACGCTGCTATTCCATTTCTA+TGG - chr1_2:41210095-41210114 Msa0070580:intron 40.0%
GCTTGAAGAAAAGACAACCT+TGG - chr1_2:41210222-41210241 Msa0070580:intron 40.0%
!! CAAAATATCCACCGATTCCA+AGG + chr1_2:41210242-41210261 None:intergenic 40.0%
AGTTAGTTACGATGAGGTGA+AGG - chr1_2:41210441-41210460 Msa0070580:CDS 40.0%
TTACGATGAGGTGAAGGATA+TGG - chr1_2:41210447-41210466 Msa0070580:CDS 40.0%
ATCTGGCAAAACATCATCGT+AGG + chr1_2:41210545-41210564 None:intergenic 40.0%
! TACGATGATGTTTTGCCAGA+TGG - chr1_2:41210544-41210563 Msa0070580:CDS 40.0%
GAACATTAGTGAAGAAAGGG+TGG - chr1_2:41210566-41210585 Msa0070580:CDS 40.0%
TGGGAAGGTCTGAGAAAATA+TGG - chr1_2:41210614-41210633 Msa0070580:CDS 40.0%
GGGAAGGTCTGAGAAAATAT+GGG - chr1_2:41210615-41210634 Msa0070580:CDS 40.0%
GGAAGGTCTGAGAAAATATG+GGG - chr1_2:41210616-41210635 Msa0070580:CDS 40.0%
AGAAAATATGGGGATCCGAT+TGG - chr1_2:41210626-41210645 Msa0070580:CDS 40.0%
GAAAATATGGGGATCCGATT+GGG - chr1_2:41210627-41210646 Msa0070580:CDS 40.0%
! GATGGAAAATGGAGCTTTGT+TGG - chr1_2:41210688-41210707 Msa0070580:CDS 40.0%
!!! ACTTATCCGGTTTTTCAAGC+TGG - chr1_2:41210724-41210743 Msa0070580:CDS 40.0%
!!! CTTATCCGGTTTTTCAAGCT+GGG - chr1_2:41210725-41210744 Msa0070580:CDS 40.0%
GGTGTGTTTAGGGAAAGAAA+TGG - chr1_2:41210753-41210772 Msa0070580:CDS 40.0%
GTTCTTACAGATGAAGAGGT+TGG - chr1_2:41210777-41210796 Msa0070580:CDS 40.0%
GTTGGTTGTTGGCATTATGA+GGG - chr1_2:41210795-41210814 Msa0070580:CDS 40.0%
TTGGCATTATGAGGGAGTTT+AGG - chr1_2:41210803-41210822 Msa0070580:CDS 40.0%
TGGCATTATGAGGGAGTTTA+GGG - chr1_2:41210804-41210823 Msa0070580:CDS 40.0%
GTAAGGTGTGAATCAAACTC+TGG + chr1_2:41210859-41210878 None:intergenic 40.0%
TTGCACCCAAAAGAAATGCA+AGG - chr1_2:41210973-41210992 Msa0070580:CDS 40.0%
! CACGTCCTTGCATTTCTTTT+GGG + chr1_2:41210981-41211000 None:intergenic 40.0%
! ACACGTCCTTGCATTTCTTT+TGG + chr1_2:41210982-41211001 None:intergenic 40.0%
AAAGAAATGCAAGGACGTGT+AGG - chr1_2:41210982-41211001 Msa0070580:CDS 40.0%
TTGAATCAGATGTTGGTGTG+TGG - chr1_2:41211121-41211140 Msa0070580:CDS 40.0%
TGAATCAGATGTTGGTGTGT+GGG - chr1_2:41211122-41211141 Msa0070580:CDS 40.0%
ACAATATGGGCTCATTGAAG+AGG - chr1_2:41211366-41211385 Msa0070580:CDS 40.0%
GTGTTCTCAATGAGTAGAGA+TGG - chr1_2:41211466-41211485 Msa0070580:CDS 40.0%
GTTCTCAATGAGTAGAGATG+GGG - chr1_2:41211468-41211487 Msa0070580:CDS 40.0%
AAAATGCACCAAAACCATCC+AGG + chr1_2:41211496-41211515 None:intergenic 40.0%
! TTGCGTAACAAGTCTTATGG+TGG - chr1_2:41211833-41211852 Msa0070580:CDS 40.0%
CAATGATAGGGTACGAGTTG+GGG + chr1_2:41209529-41209548 None:intergenic 45.0%
CCAATGATAGGGTACGAGTT+GGG + chr1_2:41209530-41209549 None:intergenic 45.0%
ACCAATGATAGGGTACGAGT+TGG + chr1_2:41209531-41209550 None:intergenic 45.0%
AAATCCATTGTATGAGGCGG+TGG + chr1_2:41209580-41209599 None:intergenic 45.0%
! GTAGGACCTTTGTTGTAGCA+AGG + chr1_2:41209719-41209738 None:intergenic 45.0%
GTTACCGAGAAACTCGAAGA+GGG + chr1_2:41209753-41209772 None:intergenic 45.0%
! CTCTTCGAGTTTCTCGGTAA+CGG - chr1_2:41209752-41209771 Msa0070580:intron 45.0%
TCAACACTGACGGTGAAAGT+TGG - chr1_2:41209780-41209799 Msa0070580:intron 45.0%
GGTTTCCACGAATTTACGGA+GGG + chr1_2:41209849-41209868 None:intergenic 45.0%
CCACGGTTTCCACGAATTTA+CGG + chr1_2:41209853-41209872 None:intergenic 45.0%
TAAATTCGTGGAAACCGTGG+TGG - chr1_2:41209853-41209872 Msa0070580:intron 45.0%
AAGCGATTTCCGGAAGAGAA+GGG + chr1_2:41210027-41210046 None:intergenic 45.0%
AAAGCGATTTCCGGAAGAGA+AGG + chr1_2:41210028-41210047 None:intergenic 45.0%
TAAACATTGGAACCGAGCGA+CGG - chr1_2:41210134-41210153 Msa0070580:intron 45.0%
AAGTCCTCTTACTTCAGCGA+CGG + chr1_2:41210170-41210189 None:intergenic 45.0%
AAAGACAACCTTGGAATCGG+TGG - chr1_2:41210231-41210250 Msa0070580:intron 45.0%
GAGATTGTATCCTCCAGTTC+CGG - chr1_2:41210501-41210520 Msa0070580:CDS 45.0%
TCTTTCCCTAAACACACCCT+CGG + chr1_2:41210751-41210770 None:intergenic 45.0%
TGGCGTTCTTACAGATGAAG+AGG - chr1_2:41210773-41210792 Msa0070580:CDS 45.0%
! CAGATGAAGAGGTTGGTTGT+TGG - chr1_2:41210784-41210803 Msa0070580:CDS 45.0%
! GGTTGGTTGTTGGCATTATG+AGG - chr1_2:41210794-41210813 Msa0070580:CDS 45.0%
ATGCGCTTCTCGATCTTTAC+TGG + chr1_2:41210904-41210923 None:intergenic 45.0%
!! TAATGAAAATTAAAAAAATA+TGG - chr1_2:41211086-41211105 Msa0070580:CDS 5.0%
! TACGAGTTGGGGATTGTGGA+GGG + chr1_2:41209518-41209537 None:intergenic 50.0%
CCCAACTCGTACCCTATCAT+TGG - chr1_2:41209527-41209546 Msa0070580:CDS 50.0%
TTGTATGAGGCGGTGGAAGT+TGG + chr1_2:41209573-41209592 None:intergenic 50.0%
ACTTCCACCGCCTCATACAA+TGG - chr1_2:41209573-41209592 Msa0070580:CDS 50.0%
AGGTGGAGGAAGGGATAGTT+TGG + chr1_2:41209613-41209632 None:intergenic 50.0%
! CGATCCCTCTTCGAGTTTCT+CGG - chr1_2:41209746-41209765 Msa0070580:intron 50.0%
CGTTACCGAGAAACTCGAAG+AGG + chr1_2:41209754-41209773 None:intergenic 50.0%
CACTGACGGTGAAAGTTGGA+AGG - chr1_2:41209784-41209803 Msa0070580:intron 50.0%
CGGTTTCCACGAATTTACGG+AGG + chr1_2:41209850-41209869 None:intergenic 50.0%
CCGTAAATTCGTGGAAACCG+TGG - chr1_2:41209850-41209869 Msa0070580:intron 50.0%
AGAGAAGGGAGGAGATACTC+CGG + chr1_2:41210013-41210032 None:intergenic 50.0%
GTATCTCCTCCCTTCTCTTC+CGG - chr1_2:41210015-41210034 Msa0070580:intron 50.0%
GTCGCTCGGTTCCAATGTTT+AGG + chr1_2:41210135-41210154 None:intergenic 50.0%
! CTGCACTCACGTGGTTCTTT+TGG - chr1_2:41210353-41210372 Msa0070580:intron 50.0%
ATTGTATCCTCCAGTTCCGG+TGG - chr1_2:41210504-41210523 Msa0070580:CDS 50.0%
ATCATCGTAGGCTGCTTCCT+TGG + chr1_2:41210533-41210552 None:intergenic 50.0%
AGGTCGAAACTCAGCCCAAT+CGG + chr1_2:41210644-41210663 None:intergenic 50.0%
GTCGAGCTGACGATGGAAAA+TGG - chr1_2:41210677-41210696 Msa0070580:CDS 50.0%
TGCTTCCAGCGATGGATGAA+GGG - chr1_2:41210827-41210846 Msa0070580:CDS 50.0%
!!! GGGGATTGTGGAGGGTGTTT+TGG + chr1_2:41209510-41209529 None:intergenic 55.0%
! GTACGAGTTGGGGATTGTGG+AGG + chr1_2:41209519-41209538 None:intergenic 55.0%
! AGGGTACGAGTTGGGGATTG+TGG + chr1_2:41209522-41209541 None:intergenic 55.0%
CGGTGGAAGTTGGCTGCAAT+GGG + chr1_2:41209563-41209582 None:intergenic 55.0%
GGAGGACAAAGGTGGAGGAA+GGG + chr1_2:41209622-41209641 None:intergenic 55.0%
TGGAGGACAAAGGTGGAGGA+AGG + chr1_2:41209623-41209642 None:intergenic 55.0%
ATGACTGAGCAGGAGCCGAA+GGG + chr1_2:41209650-41209669 None:intergenic 55.0%
GTTTGCCGTGATGACTGAGC+AGG + chr1_2:41209660-41209679 None:intergenic 55.0%
GAATGTGTTGCACCACGGCA+GGG + chr1_2:41209682-41209701 None:intergenic 55.0%
AGAATGTGTTGCACCACGGC+AGG + chr1_2:41209683-41209702 None:intergenic 55.0%
CGATTTCCGGAAGAGAAGGG+AGG + chr1_2:41210024-41210043 None:intergenic 55.0%
GGCTTCTTTCAACCGTCGCT+CGG + chr1_2:41210149-41210168 None:intergenic 55.0%
GAAGCCGTCGCTGAAGTAAG+AGG - chr1_2:41210163-41210182 Msa0070580:intron 55.0%
CAACTTCAGCTGCACTCACG+TGG - chr1_2:41210344-41210363 Msa0070580:intron 55.0%
CTGAGTTTCGACCTGAGAGG+TGG - chr1_2:41210650-41210669 Msa0070580:CDS 55.0%
TGGTTGAGTCGAGCTGACGA+TGG - chr1_2:41210670-41210689 Msa0070580:CDS 55.0%
CTCGGCCCAGCTTGAAAAAC+CGG + chr1_2:41210733-41210752 None:intergenic 55.0%
!!! GGTTTTTCAAGCTGGGCCGA+GGG - chr1_2:41210732-41210751 Msa0070580:CDS 55.0%
! GTTTAGGGTGCTTCCAGCGA+TGG - chr1_2:41210819-41210838 Msa0070580:CDS 55.0%
GTGCTTCCAGCGATGGATGA+AGG - chr1_2:41210826-41210845 Msa0070580:CDS 55.0%
GCTTCCAGCGATGGATGAAG+GGG - chr1_2:41210828-41210847 Msa0070580:CDS 55.0%
TCAACCCCTTCATCCATCGC+TGG + chr1_2:41210835-41210854 None:intergenic 55.0%
ATGAGTAGAGATGGGGCTCC+TGG - chr1_2:41211475-41211494 Msa0070580:CDS 55.0%
! ATGGGGCTCCTGGATGGTTT+TGG - chr1_2:41211485-41211504 Msa0070580:CDS 55.0%
GCGGTGGAAGTTGGCTGCAA+TGG + chr1_2:41209564-41209583 None:intergenic 60.0%
TTTGTCCTCCACCGCCCCTT+CGG - chr1_2:41209632-41209651 Msa0070580:intron 60.0%
TGACTGAGCAGGAGCCGAAG+GGG + chr1_2:41209649-41209668 None:intergenic 60.0%
GATGACTGAGCAGGAGCCGA+AGG + chr1_2:41209651-41209670 None:intergenic 60.0%
CGGCTCCTGCTCAGTCATCA+CGG - chr1_2:41209652-41209671 Msa0070580:intron 60.0%
GCACACGAATCAGCAGCGAG+AGG - chr1_2:41210068-41210087 Msa0070580:intron 60.0%
TTGGCATCCACCGGAACTGG+AGG + chr1_2:41210514-41210533 None:intergenic 60.0%
TCCAGTTCCGGTGGATGCCA+AGG - chr1_2:41210513-41210532 Msa0070580:CDS 60.0%
TCCTTGGCATCCACCGGAAC+TGG + chr1_2:41210517-41210536 None:intergenic 60.0%
GCTGCTTCCTTGGCATCCAC+CGG + chr1_2:41210523-41210542 None:intergenic 60.0%
GGGCTGAGTTTCGACCTGAG+AGG - chr1_2:41210647-41210666 Msa0070580:CDS 60.0%
GCTCGACTCAACCACCTCTC+AGG + chr1_2:41210664-41210683 None:intergenic 60.0%
!!! CGGTTTTTCAAGCTGGGCCG+AGG - chr1_2:41210731-41210750 Msa0070580:CDS 60.0%
! CTGGGCCGAGGGTGTGTTTA+GGG - chr1_2:41210743-41210762 Msa0070580:CDS 60.0%
GTAGAGATGGGGCTCCTGGA+TGG - chr1_2:41211479-41211498 Msa0070580:CDS 60.0%
GCGGTGGAGGACAAAGGTGG+AGG + chr1_2:41209627-41209646 None:intergenic 65.0%
GAAGGGGCGGTGGAGGACAA+AGG + chr1_2:41209633-41209652 None:intergenic 65.0%
CATCACGGCAAACCCTGCCG+TGG - chr1_2:41209667-41209686 Msa0070580:intron 65.0%
! GCTGGGCCGAGGGTGTGTTT+AGG - chr1_2:41210742-41210761 Msa0070580:CDS 65.0%
GGGGCGGTGGAGGACAAAGG+TGG + chr1_2:41209630-41209649 None:intergenic 70.0%
CTGAGCAGGAGCCGAAGGGG+CGG + chr1_2:41209646-41209665 None:intergenic 70.0%
AGGAGCCGAAGGGGCGGTGG+AGG + chr1_2:41209640-41209659 None:intergenic 75.0%
AGCAGGAGCCGAAGGGGCGG+TGG + chr1_2:41209643-41209662 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 41209425 41211925 41209425 ID=Msa0070580;Name=Msa0070580
chr1_2 mRNA 41209425 41211925 41209425 ID=Msa0070580-mRNA-1;Parent=Msa0070580;Name=Msa0070580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.5|1|1|2|0|565
chr1_2 exon 41210427 41211925 41210427 ID=Msa0070580-mRNA-1:exon:12571;Parent=Msa0070580-mRNA-1
chr1_2 exon 41209425 41209623 41209425 ID=Msa0070580-mRNA-1:exon:12570;Parent=Msa0070580-mRNA-1
chr1_2 CDS 41210427 41211925 41210427 ID=Msa0070580-mRNA-1:cds;Parent=Msa0070580-mRNA-1
chr1_2 CDS 41209425 41209623 41209425 ID=Msa0070580-mRNA-1:cds;Parent=Msa0070580-mRNA-1
Gene Sequence

>Msa0070580

ATGGAACCCGAAACATTGGTTTCTTTCTTACTTTTCTCTGCAACTCTCGTTTCGTTCTTATTCTTAGCCACAAAAAAACGATCCAAAACACCCTCCACAATCCCCAACTCGTACCCTATCATTGGTTCTGTGTTTCCCATTGCAGCCAACTTCCACCGCCTCATACAATGGATTTCTGACATTCTCCAAACTATCCCTTCCTCCACCTTTGTCCTCCACCGCCCCTTCGGCTCCTGCTCAGTCATCACGGCAAACCCTGCCGTGGTGCAACACATTCTCAAAACCAACTTCCCTTGCTACAACAAAGGTCCTACATTTCATCGATCCCTCTTCGAGTTTCTCGGTAACGGTATCTTCAACACTGACGGTGAAAGTTGGAAGGTTCAACGACAAATCTCAAGCCATGAATTCAACACTAAATCCCTCCGTAAATTCGTGGAAACCGTGGTGGATGTTGAACTTAACGATCGTCTGCTTCCTATTCTCCATGAAGCTTCCAAAAACCAAATGATCCTCCCTGATTTTCAAGATATTCTCCAACGTTTTACGTTTGATAATATTTGCATAATCGCATTTGGATTCGATCCGGAGTATCTCCTCCCTTCTCTTCCGGAAATCGCTTTTGTGAAAGCTTTTGACGACAGCACACGAATCAGCAGCGAGAGGATAAACGCTGCTATTCCATTTCTATGGAAAGTGAAAAAATTCCTAAACATTGGAACCGAGCGACGGTTGAAAGAAGCCGTCGCTGAAGTAAGAGGACTTGCCACAAAAATTGTTAGGGAAAAGAAAAAAGAGCTTGAAGAAAAGACAACCTTGGAATCGGTGGATATTTTGTCGCGATTTTTAAGTTCTGGTCATTCAGATGAATCTTTTGTAGTTGATATTGTGATAAGCTTTATTCTTGCTGGGAGAGATACAACTTCAGCTGCACTCACGTGGTTCTTTTGGTTAATCTCTAAGCATAGTCATGTAGAGAATGAGATTCTTAAAGAGATTACTAGAAAATCAATGATAGTTAGTTACGATGAGGTGAAGGATATGGTTTACACTCATGCATCGTTATGCGAGAGTATGAGATTGTATCCTCCAGTTCCGGTGGATGCCAAGGAAGCAGCCTACGATGATGTTTTGCCAGATGGAACATTAGTGAAGAAAGGGTGGATAGTTGCGTATCATGTATATGCTATGGGAAGGTCTGAGAAAATATGGGGATCCGATTGGGCTGAGTTTCGACCTGAGAGGTGGTTGAGTCGAGCTGACGATGGAAAATGGAGCTTTGTTGGAATGGATCCTTATACTTATCCGGTTTTTCAAGCTGGGCCGAGGGTGTGTTTAGGGAAAGAAATGGCGTTCTTACAGATGAAGAGGTTGGTTGTTGGCATTATGAGGGAGTTTAGGGTGCTTCCAGCGATGGATGAAGGGGTTGAACCAGAGTTTGATTCACACCTTACTTCAATAATGAAAGGTGGCTTTCCAGTAAAGATCGAGAAGCGCATGTTAGCTCAAATCTTACCTGATATTATATCAAAAGATCAAAGAAGATTCATGAAATGGAGACAAATCAAGGATTACATTTGTCTTACTTCAGAAGCCATAAACATGTTGCGTAACAAGTCTTATGGTGGAAATCTAGCTATCGAAATTGGCATAGCAAAAGCATTTGATATTATTGACTGGAGCTTTTTGCTAATATAA
Protein sequence

>Msa0070580

MEPETLVSFLLFSATLVSFLFLATKKRSKTPSTIPNSYPIIGSVFPIAANFHRLIQWISDILQTIPSSTFVLHRPFGSCSVITANPAVVQHILKTNFPCYNKGPTFHRSLFEFLGNGIFNTDGESWKVQRQISSHEFNTKSLRKFVETVVDVELNDRLLPILHEASKNQMILPDFQDILQRFTFDNICIIAFGFDPEYLLPSLPEIAFVKAFDDSTRISSERINAAIPFLWKVKKFLNIGTERRLKEAVAEVRGLATKIVREKKKELEEKTTLESVDILSRFLSSGHSDESFVVDIVISFILAGRDTTSAALTWFFWLISKHSHVENEILKEITRKSMIVSYDEVKDMVYTHASLCESMRLYPPVPVDAKEAAYDDVLPDGTLVKKGWIVAYHVYAMGRSEKIWGSDWAEFRPERWLSRADDGKWSFVGMDPYTYPVFQAGPRVCLGKEMAFLQMKRLVVGIMREFRVLPAMDEGVEPEFDSHLTSIMKGGFPVKIEKRMLAQILPDIISKDQRRFMKWRQIKDYICLTSEAINMLRNKSYGGNLAIEIGIAKAFDIIDWSFLLI*