AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410360 MtrunA17_Chr4g0071071 95.679 324 14 0 1 324 26 349 0.0 621
Msa1410360 MtrunA17_Chr2g0299421 72.325 271 70 3 59 324 1 271 3.06e-142 402
Msa1410360 MtrunA17_Chr4g0071091 66.538 260 86 1 59 317 1 260 5.48e-133 379
Msa1410360 MtrunA17_Chr2g0299401 67.045 264 82 3 66 324 4 267 1.50e-126 362
Msa1410360 MtrunA17_Chr2g0299461 57.468 308 77 3 71 324 8 315 9.71e-120 347
Msa1410360 MtrunA17_Chr1g0151361 63.137 255 91 2 70 323 7 259 2.17e-113 330
Msa1410360 MtrunA17_Chr2g0299391 61.417 254 96 2 71 322 15 268 2.34e-108 317
Msa1410360 MtrunA17_Chr1g0151381 45.070 142 58 2 175 315 5 127 4.20e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410360 AT3G47590.1 60.584 274 106 2 45 318 34 305 3.69e-121 351
Msa1410360 AT1G29840.1 55.016 309 128 4 12 318 9 308 3.22e-119 346
Msa1410360 AT3G47560.4 59.857 279 111 1 45 323 20 297 2.39e-118 343
Msa1410360 AT3G47560.1 63.424 257 93 1 67 323 6 261 5.41e-118 341
Msa1410360 AT3G47560.3 57.801 282 94 1 67 323 6 287 5.49e-114 332
Msa1410360 AT5G11910.4 60.474 253 99 1 64 315 33 285 9.10e-112 327
Msa1410360 AT3G47560.5 57.394 284 93 2 67 323 6 288 9.39e-112 326
Msa1410360 AT5G11910.1 60.474 253 99 1 64 315 15 267 1.48e-111 326
Msa1410360 AT3G47560.2 52.751 309 94 2 67 323 6 314 1.05e-107 317
Msa1410360 AT2G19550.1 61.905 252 88 5 72 318 5 253 1.81e-105 311
Msa1410360 AT3G47590.2 59.116 181 73 1 45 225 34 213 1.37e-75 232
Msa1410360 AT5G11910.3 60.959 146 57 0 64 209 33 178 3.21e-61 193
Msa1410360 AT5G11910.2 60.959 146 57 0 64 209 15 160 4.10e-61 192

Find 87 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCGTTGTTTATGAATA+TGG 0.091245 tig0023654:-8891 Msa1410360:exon
CTGATTCTTCTTCTGGTTAA+TGG 0.115295 tig0023654:+8746 None:intergenic
TGCAAGTGTAAGTGAATAAT+TGG 0.215219 tig0023654:-8919 Msa1410360:five_prime_UTR
GGTGCTTCTGATTCTTCTTC+TGG 0.236849 tig0023654:+8739 None:intergenic
CTTCATGCATATTTGTATTT+AGG 0.242010 tig0023654:+5299 None:intergenic
TCACCAAACGGTTTGATTCT+AGG 0.249439 tig0023654:+6825 None:intergenic
AAGTTCATACAATTAATTAA+AGG 0.263972 tig0023654:+4108 None:intergenic
TATGATGTACCGTGTTATTT+TGG 0.266060 tig0023654:-4248 Msa1410360:three_prime_UTR
GTGGGTATATTGCAAGATTC+TGG 0.270892 tig0023654:-8531 Msa1410360:CDS
TTGTTTAAGGTCGATTAAAA+AGG 0.307143 tig0023654:+9074 None:intergenic
ATAACACGGTACATCATATC+AGG 0.319431 tig0023654:+4253 None:intergenic
AACTCGTTGTTTATGAATAT+GGG 0.323656 tig0023654:-8890 Msa1410360:exon
AAGCTTTGTTGAGTAATAGA+TGG 0.333006 tig0023654:+4074 None:intergenic
AAGAAACCATACACCAAGAT+AGG 0.333809 tig0023654:-4407 Msa1410360:CDS
AGGTTATATGGAAAGAATTA+AGG 0.342347 tig0023654:-6001 Msa1410360:CDS
GCGCCTTGGAAAAGGTTATA+TGG 0.368501 tig0023654:-6013 Msa1410360:CDS
CTGGTTAATGGTTTGTGATT+GGG 0.378977 tig0023654:+8758 None:intergenic
TGTGACTCTGGAAAGTTTGC+TGG 0.387742 tig0023654:-5326 Msa1410360:CDS
TCTGGTTAATGGTTTGTGAT+TGG 0.404418 tig0023654:+8757 None:intergenic
GTAAATGCTGAGTGGGAACT+AGG 0.424158 tig0023654:+4160 None:intergenic
GTGAGTGGTTTGGTAAAATC+TGG 0.429615 tig0023654:+4508 None:intergenic
TTTCCTAGAATCAAACCGTT+TGG 0.430134 tig0023654:-6828 Msa1410360:CDS
GGTGAACCTTGCTGCTGCAT+TGG 0.431520 tig0023654:-8368 Msa1410360:CDS
AGTGATGGTTCGTTTCAGTA+TGG 0.432436 tig0023654:-6896 Msa1410360:CDS
GATGGTGCACACCACCAGTA+TGG 0.438952 tig0023654:-4207 Msa1410360:three_prime_UTR
AGTATCCCTATCTTGGTGTA+TGG 0.442733 tig0023654:+4401 None:intergenic
TCAGACACCGTTATATCTGT+TGG 0.445284 tig0023654:-4549 Msa1410360:CDS
CGTTTCAGTATGGCAACTAC+TGG 0.448611 tig0023654:-6886 Msa1410360:CDS
ATTGCAAGATTCTGGAACTA+AGG 0.452028 tig0023654:-8523 Msa1410360:CDS
AAAGCAGTCGTCAATCTCTC+TGG 0.452378 tig0023654:-6066 Msa1410360:CDS
AAATTGAATGACTGATCAAT+TGG 0.456670 tig0023654:-9044 Msa1410360:five_prime_UTR
AGAGAGACATGTTGAAGTTG+AGG 0.459065 tig0023654:+8717 None:intergenic
ATTGAAGAGCGCCTTGGAAA+AGG 0.461660 tig0023654:-6021 Msa1410360:CDS
CACTCACTACATATCATAGA+AGG 0.462333 tig0023654:-4492 Msa1410360:CDS
TTCTAGGAAATGTTGAGTTA+CGG 0.463130 tig0023654:+6841 None:intergenic
TTCATTGACGTGAAGAGGCC+AGG 0.465444 tig0023654:-5970 Msa1410360:intron
GAGAGACATGTTGAAGTTGA+GGG 0.475518 tig0023654:+8718 None:intergenic
ATGCAGCAGCAAGGTTCACC+AGG 0.479335 tig0023654:+8371 None:intergenic
GTTTGGTGACTGCAATTGTT+GGG 0.480710 tig0023654:-6811 Msa1410360:CDS
TTACCTAAGTATCCCTATCT+TGG 0.483862 tig0023654:+4394 None:intergenic
TTCCGACTACCGTGTGACTC+TGG 0.484923 tig0023654:-5338 Msa1410360:CDS
CGTTTGGTGACTGCAATTGT+TGG 0.486539 tig0023654:-6812 Msa1410360:CDS
ATGGAAAGAATTAAGGAGGA+TGG 0.490882 tig0023654:-5994 Msa1410360:CDS
GATGATGAATTTGATAATAG+TGG 0.496054 tig0023654:+8836 None:intergenic
ACTGATCAATTGGTTGGTCT+TGG 0.498258 tig0023654:-9034 Msa1410360:five_prime_UTR
ACACCAAGATAGGGATACTT+AGG 0.498887 tig0023654:-4397 Msa1410360:intron
GCAATTGTTGGGCACAGTAA+AGG 0.505246 tig0023654:-6800 Msa1410360:intron
CTAACGAAGCTAGCTCATCT+TGG 0.510470 tig0023654:+4445 None:intergenic
CAACTACTGGAGAGAGGCTG+AGG 0.515668 tig0023654:-6873 Msa1410360:CDS
GACAGGGTCCTTACAGTTCA+CGG 0.517524 tig0023654:-4576 Msa1410360:intron
TGCATTCTTTATCAATCTGA+AGG 0.518096 tig0023654:+5272 None:intergenic
TGCATCTCCAACAGATATAA+CGG 0.525489 tig0023654:+4542 None:intergenic
CATTATTGATTATGAGCTGA+TGG 0.525637 tig0023654:-4225 Msa1410360:three_prime_UTR
CTGAAGAACCGTGAACTGTA+AGG 0.530377 tig0023654:+4568 None:intergenic
TCATCTTGGTGATTAGTGTA+GGG 0.532866 tig0023654:+4459 None:intergenic
AGCTTTGTTGAGTAATAGAT+GGG 0.534458 tig0023654:+4075 None:intergenic
CAACAATTGCAGTCACCAAA+CGG 0.535341 tig0023654:+6813 None:intergenic
CTCATCTTGGTGATTAGTGT+AGG 0.538424 tig0023654:+4458 None:intergenic
TTCATTCTTTCAATATCACC+AGG 0.541481 tig0023654:-8798 Msa1410360:CDS
GGTCTTGGTGAGATATTCGC+TGG 0.543294 tig0023654:-9019 Msa1410360:five_prime_UTR
AGAAACCATACACCAAGATA+GGG 0.545738 tig0023654:-4406 Msa1410360:CDS
ATGGTTTCATTGACGTGAAG+AGG 0.545822 tig0023654:-5975 Msa1410360:CDS
CTCTGGACGCTATGATCTGA+AGG 0.547034 tig0023654:-6049 Msa1410360:CDS
CTTCTATGATATGTAGTGAG+TGG 0.547715 tig0023654:+4493 None:intergenic
AACGGCAGAACAATATTGTC+CGG 0.547958 tig0023654:-4287 Msa1410360:three_prime_UTR
ATGATATGTAGTGAGTGGTT+TGG 0.561435 tig0023654:+4498 None:intergenic
TTCCAGAGTCACACGGTAGT+CGG 0.565937 tig0023654:+5336 None:intergenic
TGGTGATATTGAAAGAATGA+AGG 0.566758 tig0023654:+8800 None:intergenic
GATGGAATTGAAGAGCGCCT+TGG 0.568111 tig0023654:-6027 Msa1410360:CDS
TTCAGATTGATAAAGAATGC+AGG 0.571124 tig0023654:-5270 Msa1410360:intron
TGAATGACTGATCAATTGGT+TGG 0.577242 tig0023654:-9040 Msa1410360:five_prime_UTR
GAGATTGTAATCTTGTGCCA+TGG 0.584009 tig0023654:-8501 Msa1410360:CDS
TGAGTGGTTTGGTAAAATCT+GGG 0.584588 tig0023654:+4509 None:intergenic
GGACGCTATGATCTGAAGGA+TGG 0.595304 tig0023654:-6045 Msa1410360:CDS
TAACACGGTACATCATATCA+GGG 0.595994 tig0023654:+4254 None:intergenic
TAAACTTGTAACTAATACAG+TGG 0.600177 tig0023654:-3995 Msa1410360:three_prime_UTR
GTCATAATACCCAATAAGCA+TGG 0.602475 tig0023654:-8564 Msa1410360:CDS
TTATATGGAAAGAATTAAGG+AGG 0.617189 tig0023654:-5998 Msa1410360:CDS
AAACTTGTAACTAATACAGT+GGG 0.624796 tig0023654:-3994 Msa1410360:three_prime_UTR
GTATGGCAACTACTGGAGAG+AGG 0.653608 tig0023654:-6879 Msa1410360:CDS
TCTTGATGTAGGTGGTGGTG+TGG 0.654415 tig0023654:-6121 Msa1410360:intron
ATATCAGGGGCAAATAACAC+CGG 0.664302 tig0023654:+4268 None:intergenic
TCAATAATGCCAAAATAACA+CGG 0.678115 tig0023654:+4239 None:intergenic
TGCAGCAGCAAGGTTCACCA+GGG 0.686910 tig0023654:+8372 None:intergenic
GCAAACTTTCCAGAGTCACA+CGG 0.699981 tig0023654:+5329 None:intergenic
GAGAGCTGCTATATATCACG+AGG 0.701468 tig0023654:+8990 None:intergenic
AACACGGTACATCATATCAG+GGG 0.705482 tig0023654:+4255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAACAGTTTAAATT+TGG + tig0023654:4828-4847 None:intergenic 10.0%
!!! TAATATCTTTTTTATACTAA+AGG + tig0023654:6000-6019 None:intergenic 10.0%
!! TGAATAATTAAACTATTATT+AGG - tig0023654:6901-6920 Msa1410360:CDS 10.0%
!!! TATTAATTTAATCTCAATTT+TGG - tig0023654:8360-8379 Msa1410360:CDS 10.0%
!!! CAATTTATTTTGTTTGTTTA+AGG + tig0023654:3997-4016 None:intergenic 15.0%
!! AGATATTATAACATATAAGT+TGG - tig0023654:6012-6031 Msa1410360:CDS 15.0%
!! GATATTATAACATATAAGTT+GGG - tig0023654:6013-6032 Msa1410360:CDS 15.0%
!!! GATATTTAAAGATTGTATTT+TGG - tig0023654:6338-6357 Msa1410360:intron 15.0%
!! TACTAAATATAATGCAATAA+TGG + tig0023654:6403-6422 None:intergenic 15.0%
!!! ATGTTCTTTTTATTTGTAAT+TGG - tig0023654:6801-6820 Msa1410360:CDS 15.0%
!!! TGTTCTTTTTATTTGTAATT+GGG - tig0023654:6802-6821 Msa1410360:CDS 15.0%
!!! ATGGTCTAAAATTTAAAATT+TGG - tig0023654:7273-7292 Msa1410360:intron 15.0%
!!! TGGTCTAAAATTTAAAATTT+GGG - tig0023654:7274-7293 Msa1410360:intron 15.0%
!! AATGTAATTTGACAAAATTA+GGG + tig0023654:7338-7357 None:intergenic 15.0%
!! TTTAAACTCTACATAAATAA+AGG - tig0023654:7960-7979 Msa1410360:intron 15.0%
!! TTTGAACAAATAAAAATCAT+TGG + tig0023654:7988-8007 None:intergenic 15.0%
!! TACATTCATAAAATTGAATA+AGG - tig0023654:8249-8268 Msa1410360:intron 15.0%
!! AAGTTCATACAATTAATTAA+AGG + tig0023654:8950-8969 None:intergenic 15.0%
!!! ATAAAAGAAACAAACTTTTG+AGG + tig0023654:4588-4607 None:intergenic 20.0%
!!! AAAACATAATGGATGAAATT+AGG + tig0023654:4642-4661 None:intergenic 20.0%
!! ATACCAATGTTATATAACAT+TGG - tig0023654:5251-5270 Msa1410360:intron 20.0%
!! ATACCAATGTTATATAACAT+TGG + tig0023654:5251-5270 None:intergenic 20.0%
!! ATTATGACATGTTTATTGTT+TGG + tig0023654:5599-5618 None:intergenic 20.0%
!!! AAAGATTGTATTTTGGATTT+AGG - tig0023654:6345-6364 Msa1410360:intron 20.0%
!!! ATTTCAATATTGACTAAGTT+AGG + tig0023654:6557-6576 None:intergenic 20.0%
!! TTAGTCAATATTGAAATAGA+AGG - tig0023654:6560-6579 Msa1410360:intron 20.0%
!! TTACTATTATTCAAACATAC+AGG - tig0023654:6671-6690 Msa1410360:intron 20.0%
!!! GTTCTTTTTATTTGTAATTG+GGG - tig0023654:6803-6822 Msa1410360:CDS 20.0%
!! GAATGTAATTTGACAAAATT+AGG + tig0023654:7339-7358 None:intergenic 20.0%
!! TTACATTCTATTAAATGATC+TGG - tig0023654:7351-7370 Msa1410360:intron 20.0%
!! TATACTTTCTCAACAAAAAA+GGG + tig0023654:7865-7884 None:intergenic 20.0%
!! TTCATAAAATTGAATAAGGT+TGG - tig0023654:8253-8272 Msa1410360:intron 20.0%
!! TCATAAAATTGAATAAGGTT+GGG - tig0023654:8254-8273 Msa1410360:intron 20.0%
!! TTAAAATATCAAGAGTGATT+AGG + tig0023654:8332-8351 None:intergenic 20.0%
! AAATTGAATGACTGATCAAT+TGG - tig0023654:4011-4030 Msa1410360:three_prime_UTR 25.0%
! AACTCGTTGTTTATGAATAT+GGG - tig0023654:4165-4184 Msa1410360:three_prime_UTR 25.0%
!! GATGATGAATTTGATAATAG+TGG + tig0023654:4222-4241 None:intergenic 25.0%
!! AATTTTTCACCATGCTTATT+GGG + tig0023654:4503-4522 None:intergenic 25.0%
!! TAATTTTTCACCATGCTTAT+TGG + tig0023654:4504-4523 None:intergenic 25.0%
! GAAATTAGGTACAAATACAA+AGG + tig0023654:4628-4647 None:intergenic 25.0%
! CTGAAGATAAGAAAACATAA+TGG + tig0023654:4653-4672 None:intergenic 25.0%
!! CATTATGTTTTCTTATCTTC+AGG - tig0023654:4651-4670 Msa1410360:intron 25.0%
!! TATGTTTAAGATTTGAGACT+TGG - tig0023654:5122-5141 Msa1410360:intron 25.0%
!!! TGGTTGTTTTATGTTTGTTT+AGG - tig0023654:5142-5161 Msa1410360:intron 25.0%
! TAAAACATAAAATTGCAACC+AGG + tig0023654:5182-5201 None:intergenic 25.0%
!!! TGAGTAGAATTCTTTGATTT+TGG - tig0023654:5429-5448 Msa1410360:intron 25.0%
!! ATTGCTCTAGATTTGAAAAA+AGG - tig0023654:5728-5747 Msa1410360:intron 25.0%
!! TTGCTCTAGATTTGAAAAAA+GGG - tig0023654:5729-5748 Msa1410360:intron 25.0%
!! GATTTTGAATGAAATGCTAT+AGG - tig0023654:5971-5990 Msa1410360:CDS 25.0%
!! ATTATAACATATAAGTTGGG+TGG - tig0023654:6016-6035 Msa1410360:CDS 25.0%
! AAAAAATTGACACCGTAAAA+TGG + tig0023654:6050-6069 None:intergenic 25.0%
! GAGAAAAAACAGCTATATTA+AGG + tig0023654:6129-6148 None:intergenic 25.0%
!!! ATAGCTGTTTTTTCTCTTTT+AGG - tig0023654:6133-6152 Msa1410360:intron 25.0%
!!! TAGCTGTTTTTTCTCTTTTA+GGG - tig0023654:6134-6153 Msa1410360:intron 25.0%
!!! AACAGGAAATTATTTTGACA+AGG + tig0023654:6439-6458 None:intergenic 25.0%
! TTGTCAAAATAATTTCCTGT+TGG - tig0023654:6438-6457 Msa1410360:intron 25.0%
!! AAAATAATTTCCTGTTGGTT+GGG - tig0023654:6443-6462 Msa1410360:intron 25.0%
! TGTTTCATCTAATATGTACT+TGG - tig0023654:6511-6530 Msa1410360:intron 25.0%
!! TCTAATATGTACTTGGTAAT+TGG - tig0023654:6518-6537 Msa1410360:intron 25.0%
! TTGAAATAGAAGGAAAATCT+AGG - tig0023654:6570-6589 Msa1410360:intron 25.0%
! TATAACTCTGTATTTCATGT+CGG - tig0023654:6719-6738 Msa1410360:intron 25.0%
! AGGTTATATGGAAAGAATTA+AGG - tig0023654:7054-7073 Msa1410360:intron 25.0%
! TTATATGGAAAGAATTAAGG+AGG - tig0023654:7057-7076 Msa1410360:intron 25.0%
! CTTTAACAATAAGTTAGAAG+AGG + tig0023654:7215-7234 None:intergenic 25.0%
!!! TAAACATTCCTACTCTTTTT+TGG - tig0023654:7545-7564 Msa1410360:intron 25.0%
! CTTCATGCATATTTGTATTT+AGG + tig0023654:7759-7778 None:intergenic 25.0%
! GTATACTTTCTCAACAAAAA+AGG + tig0023654:7866-7885 None:intergenic 25.0%
! GTTCTATGAAAAGTAAAAGA+AGG - tig0023654:8046-8065 Msa1410360:intron 25.0%
! ATTGAAAAGCTTCAGAAATT+TGG - tig0023654:8217-8236 Msa1410360:intron 25.0%
! TTGAAAAGCTTCAGAAATTT+GGG - tig0023654:8218-8237 Msa1410360:intron 25.0%
!! TTAGGCATTTTATACATGAA+GGG + tig0023654:8314-8333 None:intergenic 25.0%
!! ATTAGGCATTTTATACATGA+AGG + tig0023654:8315-8334 None:intergenic 25.0%
!! TTTTATAGGCAAGAAATCAA+CGG - tig0023654:8750-8769 Msa1410360:CDS 25.0%
! TCAATAATGCCAAAATAACA+CGG + tig0023654:8819-8838 None:intergenic 25.0%
! TAAACTTGTAACTAATACAG+TGG - tig0023654:9060-9079 Msa1410360:five_prime_UTR 25.0%
! AAACTTGTAACTAATACAGT+GGG - tig0023654:9061-9080 Msa1410360:five_prime_UTR 25.0%
!! AGAGCACATATTTTTGTCTT+GGG + tig0023654:4108-4127 None:intergenic 30.0%
TGCAAGTGTAAGTGAATAAT+TGG - tig0023654:4136-4155 Msa1410360:three_prime_UTR 30.0%
CAACTCGTTGTTTATGAATA+TGG - tig0023654:4164-4183 Msa1410360:three_prime_UTR 30.0%
TGGTGATATTGAAAGAATGA+AGG + tig0023654:4258-4277 None:intergenic 30.0%
TTCATTCTTTCAATATCACC+AGG - tig0023654:4257-4276 Msa1410360:three_prime_UTR 30.0%
GAAGATTAGAAAAATGAACC+TGG + tig0023654:4278-4297 None:intergenic 30.0%
AACACAAATTATACATCACC+TGG + tig0023654:4375-4394 None:intergenic 30.0%
! CTGTTAATAACTACCTTTTC+AGG - tig0023654:4452-4471 Msa1410360:CDS 30.0%
! CTTTTGTTCAAAACCTGAAA+AGG + tig0023654:4468-4487 None:intergenic 30.0%
TAAGCATGGTGAAAAATTAG+TGG - tig0023654:4505-4524 Msa1410360:CDS 30.0%
AAGCATGGTGAAAAATTAGT+GGG - tig0023654:4506-4525 Msa1410360:CDS 30.0%
!! ATTTTACTCACGATTTGGAT+CGG + tig0023654:4954-4973 None:intergenic 30.0%
ATATAACATTGGTATCCCAA+TGG + tig0023654:5368-5387 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG + tig0023654:5357-5376 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG - tig0023654:5261-5280 Msa1410360:intron 30.0%
ATATGAAGGTCTAAAGAAGA+AGG + tig0023654:5322-5341 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG + tig0023654:5261-5280 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG - tig0023654:5357-5376 Msa1410360:intron 30.0%
TTCTACTCAATTAAGTCTGT+AGG + tig0023654:5418-5437 None:intergenic 30.0%
AAGCACTTGTGAAATTGTTT+GGG + tig0023654:5546-5565 None:intergenic 30.0%
TAAGCACTTGTGAAATTGTT+TGG + tig0023654:5547-5566 None:intergenic 30.0%
! ACTTATTTGAGTTCGTATAC+TGG + tig0023654:5572-5591 None:intergenic 30.0%
TAAAATCGCCATTAAGTTTG+TGG - tig0023654:5634-5653 Msa1410360:intron 30.0%
! TGCTCTAGATTTGAAAAAAG+GGG - tig0023654:5730-5749 Msa1410360:intron 30.0%
! TTGATTATTTTCACAAGGGT+AGG - tig0023654:5753-5772 Msa1410360:intron 30.0%
! CAATACATCACCAAATTTTG+TGG + tig0023654:5786-5805 None:intergenic 30.0%
! ACTCTCGTGTTTAGTTTAAT+AGG - tig0023654:5843-5862 Msa1410360:intron 30.0%
AGGTACATTGGTGAAAATAT+TGG + tig0023654:5934-5953 None:intergenic 30.0%
GTTAATACATGTAGGTACAT+TGG + tig0023654:5946-5965 None:intergenic 30.0%
ATCAAGTGGTTAATACATGT+AGG + tig0023654:5954-5973 None:intergenic 30.0%
GCATTTCATTCAAAATCAAG+TGG + tig0023654:5968-5987 None:intergenic 30.0%
TGTACTAGATTTCTGTTATC+TGG - tig0023654:6070-6089 Msa1410360:CDS 30.0%
! TTCTAGGAAATGTTGAGTTA+CGG + tig0023654:6217-6236 None:intergenic 30.0%
CAAAATAATTTCCTGTTGGT+TGG - tig0023654:6442-6461 Msa1410360:intron 30.0%
TTAAATGATGCAGTACTAAG+AGG - tig0023654:6484-6503 Msa1410360:intron 30.0%
TAAATGATGCAGTACTAAGA+GGG - tig0023654:6485-6504 Msa1410360:intron 30.0%
! TTTCCATATAACCTTTTCCA+AGG + tig0023654:7048-7067 None:intergenic 30.0%
CTTATGTGTGACTAAAAGAT+AGG + tig0023654:7114-7133 None:intergenic 30.0%
AACAATAAGTTAGAAGAGGA+GGG + tig0023654:7211-7230 None:intergenic 30.0%
TAACAATAAGTTAGAAGAGG+AGG + tig0023654:7212-7231 None:intergenic 30.0%
GAACTATAGCTTATAGGATA+GGG + tig0023654:7304-7323 None:intergenic 30.0%
AGAACTATAGCTTATAGGAT+AGG + tig0023654:7305-7324 None:intergenic 30.0%
CAGTAAGAACTATAGCTTAT+AGG + tig0023654:7310-7329 None:intergenic 30.0%
TATATGATCATTACTCTTGC+AGG - tig0023654:7432-7451 Msa1410360:intron 30.0%
!! CTTTAGAACCAAAAAAGAGT+AGG + tig0023654:7556-7575 None:intergenic 30.0%
AGTATAGTTCAGATGGTAAA+AGG + tig0023654:7670-7689 None:intergenic 30.0%
TGCATTCTTTATCAATCTGA+AGG + tig0023654:7786-7805 None:intergenic 30.0%
TTCAGATTGATAAAGAATGC+AGG - tig0023654:7785-7804 Msa1410360:intron 30.0%
TATACCTGCAGAATTTATGA+AGG - tig0023654:7881-7900 Msa1410360:intron 30.0%
TTTAAGAGTTCCATGATTGT+TGG - tig0023654:8024-8043 Msa1410360:intron 30.0%
TTTCATAGAACCAACAATCA+TGG + tig0023654:8037-8056 None:intergenic 30.0%
CTAATGTTCGACTTCTATTA+AGG - tig0023654:8088-8107 Msa1410360:intron 30.0%
!!! ATTAAGGAGGTTTTAGATGT+TGG - tig0023654:8104-8123 Msa1410360:intron 30.0%
!!! TTAAGGAGGTTTTAGATGTT+GGG - tig0023654:8105-8124 Msa1410360:intron 30.0%
! CTTTTCAATAACCAGACAAA+TGG + tig0023654:8206-8225 None:intergenic 30.0%
TGAAAAGCTTCAGAAATTTG+GGG - tig0023654:8219-8238 Msa1410360:intron 30.0%
AAATTGAATAAGGTTGGGTT+TGG - tig0023654:8259-8278 Msa1410360:intron 30.0%
! TAGGCATTTTATACATGAAG+GGG + tig0023654:8313-8332 None:intergenic 30.0%
!! TTAGCGAATCTTGCTTTTAT+AGG - tig0023654:8736-8755 Msa1410360:CDS 30.0%
!!! TATGATGTACCGTGTTATTT+TGG - tig0023654:8807-8826 Msa1410360:CDS 30.0%
! CATTATTGATTATGAGCTGA+TGG - tig0023654:8830-8849 Msa1410360:CDS 30.0%
! GAATTTTGTAAATGCTGAGT+GGG + tig0023654:8905-8924 None:intergenic 30.0%
! TGAATTTTGTAAATGCTGAG+TGG + tig0023654:8906-8925 None:intergenic 30.0%
!! AGCTTTGTTGAGTAATAGAT+GGG + tig0023654:8983-9002 None:intergenic 30.0%
!! AAGCTTTGTTGAGTAATAGA+TGG + tig0023654:8984-9003 None:intergenic 30.0%
TGAATGACTGATCAATTGGT+TGG - tig0023654:4015-4034 Msa1410360:three_prime_UTR 35.0%
!! GAGAGCACATATTTTTGTCT+TGG + tig0023654:4109-4128 None:intergenic 35.0%
! CTGGTTAATGGTTTGTGATT+GGG + tig0023654:4300-4319 None:intergenic 35.0%
! TCTGGTTAATGGTTTGTGAT+TGG + tig0023654:4301-4320 None:intergenic 35.0%
! CTGATTCTTCTTCTGGTTAA+TGG + tig0023654:4312-4331 None:intergenic 35.0%
GTCATAATACCCAATAAGCA+TGG - tig0023654:4491-4510 Msa1410360:CDS 35.0%
!! ATTGCAAGATTCTGGAACTA+AGG - tig0023654:4532-4551 Msa1410360:CDS 35.0%
!! TCTTTTCGCTTTGACTTTTC+TGG - tig0023654:4727-4746 Msa1410360:intron 35.0%
!! GCTTTGACTTTTCTGGAAAT+GGG - tig0023654:4734-4753 Msa1410360:intron 35.0%
! AGTGTTTTCGTAAGCTATCA+TGG - tig0023654:4861-4880 Msa1410360:intron 35.0%
TATGTTGAAGCTTTCTGACT+AGG - tig0023654:5048-5067 Msa1410360:intron 35.0%
AAAATTGCAACCAGGATTGA+AGG + tig0023654:5174-5193 None:intergenic 35.0%
CTTCTTTAGACCTTCATATG+TGG - tig0023654:5323-5342 Msa1410360:CDS 35.0%
TTAAGTCTGTAGGATCGAAA+GGG + tig0023654:5408-5427 None:intergenic 35.0%
ATTAAGTCTGTAGGATCGAA+AGG + tig0023654:5409-5428 None:intergenic 35.0%
ATCTTGCATCAGATCAAAAC+TGG + tig0023654:5485-5504 None:intergenic 35.0%
GGAAATAGCTTAAGGTTGTT+TGG + tig0023654:5514-5533 None:intergenic 35.0%
GAGCTTATGGAAATAGCTTA+AGG + tig0023654:5522-5541 None:intergenic 35.0%
AAATTGTTTGGGAGAGCTTA+TGG + tig0023654:5535-5554 None:intergenic 35.0%
CCATTAAGTTTGTGGATACA+GGG - tig0023654:5642-5661 Msa1410360:intron 35.0%
!! AGGGGTTGATTATTTTCACA+AGG - tig0023654:5748-5767 Msa1410360:intron 35.0%
!! GGGGTTGATTATTTTCACAA+GGG - tig0023654:5749-5768 Msa1410360:intron 35.0%
TAATAGGAAACAACCGAATG+AGG - tig0023654:5859-5878 Msa1410360:intron 35.0%
! GTGGTAGTTTCTCCATTTTA+CGG - tig0023654:6035-6054 Msa1410360:CDS 35.0%
!! TTCTCTTTTAGGGAAAGTGA+TGG - tig0023654:6144-6163 Msa1410360:intron 35.0%
TTTCCTAGAATCAAACCGTT+TGG - tig0023654:6227-6246 Msa1410360:intron 35.0%
!! GGTTATATTTTTGAGCTGCT+TGG - tig0023654:6591-6610 Msa1410360:intron 35.0%
TCTGTATTTCATGTCGGAAT+AGG - tig0023654:6725-6744 Msa1410360:intron 35.0%
GTGTATCTGTATCTTGATGT+AGG - tig0023654:6923-6942 Msa1410360:intron 35.0%
TATCTGTATCTTGATGTAGG+TGG - tig0023654:6926-6945 Msa1410360:intron 35.0%
ATGGAAAGAATTAAGGAGGA+TGG - tig0023654:7061-7080 Msa1410360:intron 35.0%
TGACTAAAAGATAGGTTACC+TGG + tig0023654:7106-7125 None:intergenic 35.0%
TGTGAAAGAAAAACAAGCCA+TGG + tig0023654:7254-7273 None:intergenic 35.0%
!!! TGGCTTGTTTTTCTTTCACA+TGG - tig0023654:7254-7273 Msa1410360:intron 35.0%
!! TTTGGTTCTAAAGAGTCTAG+AGG - tig0023654:7563-7582 Msa1410360:intron 35.0%
TCTCGTAAGTATAGTTCAGA+TGG + tig0023654:7677-7696 None:intergenic 35.0%
AAGACCTTCATAAATTCTGC+AGG + tig0023654:7888-7907 None:intergenic 35.0%
ATGTTCGACTTCTATTAAGG+AGG - tig0023654:8091-8110 Msa1410360:intron 35.0%
! TGATTTTCCTTCCATTTGTC+TGG - tig0023654:8192-8211 Msa1410360:intron 35.0%
TCAATAACCAGACAAATGGA+AGG + tig0023654:8202-8221 None:intergenic 35.0%
TGATATCATCCACTTGACTA+GGG + tig0023654:8392-8411 None:intergenic 35.0%
TGCATCTCCAACAGATATAA+CGG + tig0023654:8516-8535 None:intergenic 35.0%
!! TGAGTGGTTTGGTAAAATCT+GGG + tig0023654:8549-8568 None:intergenic 35.0%
ATGATATGTAGTGAGTGGTT+TGG + tig0023654:8560-8579 None:intergenic 35.0%
CTTCTATGATATGTAGTGAG+TGG + tig0023654:8565-8584 None:intergenic 35.0%
CACTCACTACATATCATAGA+AGG - tig0023654:8563-8582 Msa1410360:CDS 35.0%
! TCATCTTGGTGATTAGTGTA+GGG + tig0023654:8599-8618 None:intergenic 35.0%
AAGAAACCATACACCAAGAT+AGG - tig0023654:8648-8667 Msa1410360:intron 35.0%
AGAAACCATACACCAAGATA+GGG - tig0023654:8649-8668 Msa1410360:intron 35.0%
TTACCTAAGTATCCCTATCT+TGG + tig0023654:8664-8683 None:intergenic 35.0%
TAACACGGTACATCATATCA+GGG + tig0023654:8804-8823 None:intergenic 35.0%
ATAACACGGTACATCATATC+AGG + tig0023654:8805-8824 None:intergenic 35.0%
! TGTCTTCTTTTTCTCCATAC+TGG + tig0023654:8865-8884 None:intergenic 35.0%
ATGGAGAAAAAGAAGACATG+CGG - tig0023654:8867-8886 Msa1410360:CDS 35.0%
!! ACTGATCAATTGGTTGGTCT+TGG - tig0023654:4021-4040 Msa1410360:three_prime_UTR 40.0%
GAGAGACATGTTGAAGTTGA+GGG + tig0023654:4340-4359 None:intergenic 40.0%
AGAGAGACATGTTGAAGTTG+AGG + tig0023654:4341-4360 None:intergenic 40.0%
TCTCTCTCTTCAGAAAAACC+AGG - tig0023654:4354-4373 Msa1410360:intron 40.0%
GTGGGTATATTGCAAGATTC+TGG - tig0023654:4524-4543 Msa1410360:CDS 40.0%
GAGATTGTAATCTTGTGCCA+TGG - tig0023654:4554-4573 Msa1410360:CDS 40.0%
TCTTCAGGAATCAAAAACCC+TGG - tig0023654:4666-4685 Msa1410360:intron 40.0%
!! CGCTTTGACTTTTCTGGAAA+TGG - tig0023654:4733-4752 Msa1410360:intron 40.0%
! CAGGGATTTTACTCACGATT+TGG + tig0023654:4959-4978 None:intergenic 40.0%
! CATTTTCATGCGATTTCGCA+GGG + tig0023654:4977-4996 None:intergenic 40.0%
! ACATTTTCATGCGATTTCGC+AGG + tig0023654:4978-4997 None:intergenic 40.0%
ACATAAACCACTCAAAGCCA+GGG + tig0023654:5033-5052 None:intergenic 40.0%
AACATAAACCACTCAAAGCC+AGG + tig0023654:5034-5053 None:intergenic 40.0%
! TATGCATGTGAAGTGCTATG+CGG + tig0023654:5291-5310 None:intergenic 40.0%
GTATCCCAATGATACACAAG+TGG - tig0023654:5379-5398 Msa1410360:intron 40.0%
GACACCACTTGTGTATCATT+GGG + tig0023654:5386-5405 None:intergenic 40.0%
GCCATTAAGTTTGTGGATAC+AGG - tig0023654:5641-5660 Msa1410360:intron 40.0%
CCCTGTATCCACAAACTTAA+TGG + tig0023654:5645-5664 None:intergenic 40.0%
TCTCATTCATGCTCTCCATT+GGG - tig0023654:5676-5695 Msa1410360:intron 40.0%
GTTGCAATTCATGAACCCAA+TGG + tig0023654:5694-5713 None:intergenic 40.0%
TTGGAGCTAGCTATAGATGT+GGG + tig0023654:5915-5934 None:intergenic 40.0%
ATTGGAGCTAGCTATAGATG+TGG + tig0023654:5916-5935 None:intergenic 40.0%
AGTGATGGTTCGTTTCAGTA+TGG - tig0023654:6159-6178 Msa1410360:intron 40.0%
TCACCAAACGGTTTGATTCT+AGG + tig0023654:6233-6252 None:intergenic 40.0%
CAACAATTGCAGTCACCAAA+CGG + tig0023654:6245-6264 None:intergenic 40.0%
! GTTTGGTGACTGCAATTGTT+GGG - tig0023654:6244-6263 Msa1410360:intron 40.0%
TGGGCACAGTAAAGGTAAAT+TGG - tig0023654:6263-6282 Msa1410360:intron 40.0%
CTGTCTCAAACTTGTCTTGT+TGG + tig0023654:6319-6338 None:intergenic 40.0%
TTGGCAAAAACCTGCTACAA+AGG - tig0023654:6610-6629 Msa1410360:intron 40.0%
AAACCTGCTACAAAGGAACT+CGG - tig0023654:6617-6636 Msa1410360:intron 40.0%
! CCACATAATGCAAGAGCATA+GGG + tig0023654:6767-6786 None:intergenic 40.0%
! TCCACATAATGCAAGAGCAT+AGG + tig0023654:6768-6787 None:intergenic 40.0%
TCTTGCATTATGTGGATGAC+TGG - tig0023654:6772-6791 Msa1410360:intron 40.0%
ATGGTTTCATTGACGTGAAG+AGG - tig0023654:7080-7099 Msa1410360:intron 40.0%
AGTTTCAATTCGTCTTTGCG+TGG - tig0023654:7132-7151 Msa1410360:intron 40.0%
GTTTCAATTCGTCTTTGCGT+GGG - tig0023654:7133-7152 Msa1410360:intron 40.0%
TTTCAATTCGTCTTTGCGTG+GGG - tig0023654:7134-7153 Msa1410360:intron 40.0%
AAATGATCTGGCACTTGACA+TGG - tig0023654:7363-7382 Msa1410360:intron 40.0%
!! ACACACTAAGTGTTGAGAAG+TGG - tig0023654:7594-7613 Msa1410360:intron 40.0%
!! CACACTAAGTGTTGAGAAGT+GGG - tig0023654:7595-7614 Msa1410360:intron 40.0%
!! ACACTAAGTGTTGAGAAGTG+GGG - tig0023654:7596-7615 Msa1410360:intron 40.0%
!!! AGGTTTTAGATGTTGGGAGA+AGG - tig0023654:8111-8130 Msa1410360:intron 40.0%
AAGGAATGAGGAGAAACGAA+AGG - tig0023654:8130-8149 Msa1410360:intron 40.0%
AGGAATGAGGAGAAACGAAA+GGG - tig0023654:8131-8150 Msa1410360:intron 40.0%
GAGAGAAGGGAAGAAAATGA+GGG - tig0023654:8160-8179 Msa1410360:intron 40.0%
AGAGAAGGGAAGAAAATGAG+GGG - tig0023654:8161-8180 Msa1410360:intron 40.0%
GTGATATCATCCACTTGACT+AGG + tig0023654:8393-8412 None:intergenic 40.0%
TCAGACACCGTTATATCTGT+TGG - tig0023654:8506-8525 Msa1410360:CDS 40.0%
!! GTGAGTGGTTTGGTAAAATC+TGG + tig0023654:8550-8569 None:intergenic 40.0%
! CTCATCTTGGTGATTAGTGT+AGG + tig0023654:8600-8619 None:intergenic 40.0%
! AGTATCCCTATCTTGGTGTA+TGG + tig0023654:8657-8676 None:intergenic 40.0%
ACACCAAGATAGGGATACTT+AGG - tig0023654:8658-8677 Msa1410360:intron 40.0%
AACGGCAGAACAATATTGTC+CGG - tig0023654:8768-8787 Msa1410360:CDS 40.0%
ATATCAGGGGCAAATAACAC+CGG + tig0023654:8790-8809 None:intergenic 40.0%
AACACGGTACATCATATCAG+GGG + tig0023654:8803-8822 None:intergenic 40.0%
! CTTCTTTTTCTCCATACTGG+TGG + tig0023654:8862-8881 None:intergenic 40.0%
TGGAGAAAAAGAAGACATGC+GGG - tig0023654:8868-8887 Msa1410360:CDS 40.0%
GAGAGCTGCTATATATCACG+AGG + tig0023654:4068-4087 None:intergenic 45.0%
GGTGCTTCTGATTCTTCTTC+TGG + tig0023654:4319-4338 None:intergenic 45.0%
!! CTTTTGAGGAGCGAAAACCA+TGG + tig0023654:4574-4593 None:intergenic 45.0%
! CTTTTTCCAATGCAGCAGCA+AGG + tig0023654:4696-4715 None:intergenic 45.0%
! ACTCACGATTTGGATCGGTA+GGG + tig0023654:4949-4968 None:intergenic 45.0%
! TACTCACGATTTGGATCGGT+AGG + tig0023654:4950-4969 None:intergenic 45.0%
TAGGTACGATCCTTCAATCC+TGG - tig0023654:5161-5180 Msa1410360:intron 45.0%
AATGGTACACAAGTGGTGTC+CGG + tig0023654:5228-5247 None:intergenic 45.0%
GACACCACTTGTGTACCATT+GGG - tig0023654:5228-5247 Msa1410360:intron 45.0%
GTATCCCAATGGTACACAAG+TGG + tig0023654:5235-5254 None:intergenic 45.0%
! TGAAGGTGTGCCACATATGA+AGG + tig0023654:5336-5355 None:intergenic 45.0%
CATATGTGGCACACCTTCAT+TGG - tig0023654:5337-5356 Msa1410360:CDS 45.0%
GGACACCACTTGTGTATCAT+TGG + tig0023654:5387-5406 None:intergenic 45.0%
GTCTCATTCATGCTCTCCAT+TGG - tig0023654:5675-5694 Msa1410360:intron 45.0%
AGGAGCGATGCCACAAAATT+TGG - tig0023654:5773-5792 Msa1410360:intron 45.0%
AGAGCATGAGCTACCTCATT+CGG + tig0023654:5875-5894 None:intergenic 45.0%
TCATGCTCTTGCAAGTTGCA+AGG - tig0023654:5886-5905 Msa1410360:intron 45.0%
CATGCTCTTGCAAGTTGCAA+GGG - tig0023654:5887-5906 Msa1410360:intron 45.0%
CGTTTCAGTATGGCAACTAC+TGG - tig0023654:6169-6188 Msa1410360:intron 45.0%
! CGTTTGGTGACTGCAATTGT+TGG - tig0023654:6243-6262 Msa1410360:intron 45.0%
GCAATTGTTGGGCACAGTAA+AGG - tig0023654:6255-6274 Msa1410360:intron 45.0%
! CTCAAACTTGTCTTGTTGGC+AGG + tig0023654:6315-6334 None:intergenic 45.0%
ATCTTTACAGCCCAACCAAC+AGG + tig0023654:6456-6475 None:intergenic 45.0%
CCCTATGCTCTTGCATTATG+TGG - tig0023654:6764-6783 Msa1410360:intron 45.0%
GCATTATGTGGATGACTGGA+TGG - tig0023654:6776-6795 Msa1410360:intron 45.0%
CTGTATCTTGATGTAGGTGG+TGG - tig0023654:6929-6948 Msa1410360:intron 45.0%
AAAGCAGTCGTCAATCTCTC+TGG - tig0023654:6989-7008 Msa1410360:intron 45.0%
!! ATTGAAGAGCGCCTTGGAAA+AGG - tig0023654:7034-7053 Msa1410360:intron 45.0%
GCGCCTTGGAAAAGGTTATA+TGG - tig0023654:7042-7061 Msa1410360:intron 45.0%
TTCAATTCGTCTTTGCGTGG+GGG - tig0023654:7135-7154 Msa1410360:intron 45.0%
TGGAACCACCATAGATGATC+TGG - tig0023654:7478-7497 Msa1410360:intron 45.0%
ATGTGCCAGATCATCTATGG+TGG + tig0023654:7486-7505 None:intergenic 45.0%
CTCATGTGCCAGATCATCTA+TGG + tig0023654:7489-7508 None:intergenic 45.0%
!! CACTAAGTGTTGAGAAGTGG+GGG - tig0023654:7597-7616 Msa1410360:intron 45.0%
CATTTGATATGCTGTGGTGC+GGG + tig0023654:7638-7657 None:intergenic 45.0%
GCATTTGATATGCTGTGGTG+CGG + tig0023654:7639-7658 None:intergenic 45.0%
!! CAGGAGCATTTGATATGCTG+TGG + tig0023654:7644-7663 None:intergenic 45.0%
TTCAGATGGTAAAAGGCTGC+AGG + tig0023654:7663-7682 None:intergenic 45.0%
GCAAACTTTCCAGAGTCACA+CGG + tig0023654:7729-7748 None:intergenic 45.0%
! TGTGACTCTGGAAAGTTTGC+TGG - tig0023654:7729-7748 Msa1410360:intron 45.0%
AGATGTTGGGAGAAGGAATG+AGG - tig0023654:8118-8137 Msa1410360:intron 45.0%
GGAATGAGGAGAAACGAAAG+GGG - tig0023654:8132-8151 Msa1410360:intron 45.0%
AGGAGAAACGAAAGGGGAAT+GGG - tig0023654:8138-8157 Msa1410360:intron 45.0%
GGAGAGAAGGGAAGAAAATG+AGG - tig0023654:8159-8178 Msa1410360:intron 45.0%
TGGTTTACTCCCTAGTCAAG+TGG - tig0023654:8380-8399 Msa1410360:CDS 45.0%
CTGAAGAACCGTGAACTGTA+AGG + tig0023654:8490-8509 None:intergenic 45.0%
CTAACGAAGCTAGCTCATCT+TGG + tig0023654:8613-8632 None:intergenic 45.0%
GTAAATGCTGAGTGGGAACT+AGG + tig0023654:8898-8917 None:intergenic 45.0%
GGTCTTGGTGAGATATTCGC+TGG - tig0023654:4036-4055 Msa1410360:three_prime_UTR 50.0%
GCTGCTGCATTGGAAAAAGC+TGG - tig0023654:4697-4716 Msa1410360:intron 50.0%
! CTCACGATTTGGATCGGTAG+GGG + tig0023654:4948-4967 None:intergenic 50.0%
TCGTGCGATTCTAACAACCC+TGG - tig0023654:5013-5032 Msa1410360:intron 50.0%
!! CTAACAACCCTGGCTTTGAG+TGG - tig0023654:5023-5042 Msa1410360:intron 50.0%
! CTTGCTATCCCCTTTCGATC+CGG - tig0023654:5206-5225 Msa1410360:intron 50.0%
AAGTGGTGTCCGGATCGAAA+GGG + tig0023654:5218-5237 None:intergenic 50.0%
GGACACCACTTGTGTACCAT+TGG - tig0023654:5227-5246 Msa1410360:intron 50.0%
GTATGGCAACTACTGGAGAG+AGG - tig0023654:6176-6195 Msa1410360:intron 50.0%
TGACCGAGTTCCTTTGTAGC+AGG + tig0023654:6623-6642 None:intergenic 50.0%
! TCTTGATGTAGGTGGTGGTG+TGG - tig0023654:6934-6953 Msa1410360:intron 50.0%
CTCTGGACGCTATGATCTGA+AGG - tig0023654:7006-7025 Msa1410360:intron 50.0%
GGACGCTATGATCTGAAGGA+TGG - tig0023654:7010-7029 Msa1410360:intron 50.0%
!! GATGGAATTGAAGAGCGCCT+TGG - tig0023654:7028-7047 Msa1410360:intron 50.0%
TTCATTGACGTGAAGAGGCC+AGG - tig0023654:7085-7104 Msa1410360:intron 50.0%
! GCGTGGGGGCATGTTATATT+AGG - tig0023654:7149-7168 Msa1410360:intron 50.0%
! GTGTATTTGCTGCGAGACCA+TGG - tig0023654:7234-7253 Msa1410360:intron 50.0%
! TTCTGAGTACCGTGTGACTC+TGG - tig0023654:7458-7477 Msa1410360:intron 50.0%
ATGGTGGTTCCAGAGTCACA+CGG + tig0023654:7470-7489 None:intergenic 50.0%
GTTGAGAAGTGGGGGAATTG+CGG - tig0023654:7605-7624 Msa1410360:intron 50.0%
TTGAGAAGTGGGGGAATTGC+GGG - tig0023654:7606-7625 Msa1410360:intron 50.0%
ACGAGACTAAGCACACTTGC+AGG - tig0023654:7691-7710 Msa1410360:intron 50.0%
TTCCAGAGTCACACGGTAGT+CGG + tig0023654:7722-7741 None:intergenic 50.0%
GAGGAGAAACGAAAGGGGAA+TGG - tig0023654:8137-8156 Msa1410360:intron 50.0%
GAAAGGGGAATGGGAGAGAA+GGG - tig0023654:8147-8166 Msa1410360:intron 50.0%
TGCAGCAGCAAGGTTCACCA+GGG + tig0023654:4686-4705 None:intergenic 55.0%
ATGCAGCAGCAAGGTTCACC+AGG + tig0023654:4687-4706 None:intergenic 55.0%
GGTGAACCTTGCTGCTGCAT+TGG - tig0023654:4687-4706 Msa1410360:intron 55.0%
AGTGGTGTCCGGATCGAAAG+GGG + tig0023654:5217-5236 None:intergenic 55.0%
CAAGTGGTGTCCGGATCGAA+AGG + tig0023654:5219-5238 None:intergenic 55.0%
GCTATGCGGCACACCTTCAT+TGG + tig0023654:5277-5296 None:intergenic 55.0%
CAACTACTGGAGAGAGGCTG+AGG - tig0023654:6182-6201 Msa1410360:intron 55.0%
TGATATGCTGTGGTGCGGGT+TGG + tig0023654:7634-7653 None:intergenic 55.0%
TTCCGACTACCGTGTGACTC+TGG - tig0023654:7717-7736 Msa1410360:intron 55.0%
CGAAAGGGGAATGGGAGAGA+AGG - tig0023654:8146-8165 Msa1410360:intron 55.0%
GATGGTGCACACCACCAGTA+TGG - tig0023654:8848-8867 Msa1410360:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0023654 gene 3984 9093 3984 ID=Msa1410360;Name=Msa1410360
tig0023654 mRNA 3984 9093 3984 ID=Msa1410360-mRNA-1;Parent=Msa1410360;Name=Msa1410360-mRNA-1;_AED=0.17;_eAED=0.17;_QI=193|1|1|1|0.85|0.87|8|336|324
tig0023654 exon 3984 4319 3984 ID=Msa1410360-mRNA-1:exon:26560;Parent=Msa1410360-mRNA-1
tig0023654 exon 4398 4593 4398 ID=Msa1410360-mRNA-1:exon:26559;Parent=Msa1410360-mRNA-1
tig0023654 exon 5271 5364 5271 ID=Msa1410360-mRNA-1:exon:26558;Parent=Msa1410360-mRNA-1
tig0023654 exon 5971 6132 5971 ID=Msa1410360-mRNA-1:exon:26557;Parent=Msa1410360-mRNA-1
tig0023654 exon 6801 6922 6801 ID=Msa1410360-mRNA-1:exon:26556;Parent=Msa1410360-mRNA-1
tig0023654 exon 8322 8404 8322 ID=Msa1410360-mRNA-1:exon:26555;Parent=Msa1410360-mRNA-1
tig0023654 exon 8485 8603 8485 ID=Msa1410360-mRNA-1:exon:26554;Parent=Msa1410360-mRNA-1
tig0023654 exon 8702 9093 8702 ID=Msa1410360-mRNA-1:exon:26553;Parent=Msa1410360-mRNA-1
tig0023654 five_prime_UTR 8901 9093 8901 ID=Msa1410360-mRNA-1:five_prime_utr;Parent=Msa1410360-mRNA-1
tig0023654 CDS 8702 8900 8702 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 CDS 8485 8603 8485 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 CDS 8322 8404 8322 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 CDS 6801 6922 6801 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 CDS 5971 6132 5971 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 CDS 5271 5364 5271 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 CDS 4398 4593 4398 ID=Msa1410360-mRNA-1:cds;Parent=Msa1410360-mRNA-1
tig0023654 three_prime_UTR 3984 4319 3984 ID=Msa1410360-mRNA-1:three_prime_utr;Parent=Msa1410360-mRNA-1
Gene Sequence

>Msa1410360

ATGAATATGGGTATCTTTGTAGTACAAAATGCTCACTCACTTCCACTATTATCAAATTCATCATCACTTTCTATAACTCCTTCATTCTTTCAATATCACCAGGTTCATTTTTCTAATCTTCCCAATCACAAACCATTAACCAGAAGAAGAATCAGAAGCACCCTCAACTTCAACATGTCTCTCTCTTCAGAAAAACCAGGTTTTGAACAAAAGAGAGTCATAATACCCAATAAGCATGGTGAAAAATTAGTGGGTATATTGCAAGATTCTGGAACTAAGGAGATTGTAATCTTGTGCCATGGTTTTCGCTCCTCAAAAGAATCAAAAACCCTGGTGAACCTTGCTGCTGCATTGGAAAAAGCTGGAATCAGTTCTTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGATGGTTCGTTTCAGTATGGCAACTACTGGAGAGAGGCTGAGGATTTACATGCCGTAACTCAACATTTCCTAGAATCAAACCGTTTGGTGACTGCAATTGTTGGGCACAGTAAAGGTGGTGGTGTGGTGCTTCTATATGCTTCAAAATATCATGACATCAAAGCAGTCGTCAATCTCTCTGGACGCTATGATCTGAAGGATGGAATTGAAGAGCGCCTTGGAAAAGGTTATATGGAAAGAATTAAGGAGGATGGTTTCATTGACGTGAAGAGGCCAGGAAGTTCCGACTACCGTGTGACTCTGGAAAGTTTGCTGGATCGCCTAAATACAAATATGCATGAAGCATGCCTTCAGATTGATAAAGAATGCAGGGTCCTTACAGTTCACGGTTCTTCAGACACCGTTATATCTGTTGGAGATGCATCTAAGTTTGCCCAGATTTTACCAAACCACTCACTACATATCATAGAAGGAGCTGATCATCCCTACACTAATCACCAAGATGAGCTAGCTTCGTTAGTTGTTAACTTCATAAAAGAAACCATACACCAAGATAGGGATACTTAG

Protein sequence

>Msa1410360

MNMGIFVVQNAHSLPLLSNSSSLSITPSFFQYHQVHFSNLPNHKPLTRRRIRSTLNFNMSLSSEKPGFEQKRVIIPNKHGEKLVGILQDSGTKEIVILCHGFRSSKESKTLVNLAAALEKAGISSFRFDFSGNGESDGSFQYGNYWREAEDLHAVTQHFLESNRLVTAIVGHSKGGGVVLLYASKYHDIKAVVNLSGRYDLKDGIEERLGKGYMERIKEDGFIDVKRPGSSDYRVTLESLLDRLNTNMHEACLQIDKECRVLTVHGSSDTVISVGDASKFAQILPNHSLHIIEGADHPYTNHQDELASLVVNFIKETIHQDRDT*