AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0681100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681100 MtrunA17_Chr4g0027101 91.535 508 16 1 1 481 2 509 0.0 952
Msa0681100 MtrunA17_Chr2g0282181 38.776 245 145 1 10 249 21 265 7.17e-53 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681100 AT5G22620.1 67.727 440 115 4 60 474 44 481 0.0 614
Msa0681100 AT5G22620.5 67.727 440 115 4 60 474 44 481 0.0 614
Msa0681100 AT5G22620.2 67.727 440 115 4 60 474 44 481 0.0 614
Msa0681100 AT5G22620.6 67.202 436 115 5 60 474 44 472 0.0 596
Msa0681100 AT5G22620.4 66.284 436 106 4 60 474 44 459 0.0 587
Msa0681100 AT5G22620.3 66.284 436 106 4 60 474 44 459 0.0 587
Msa0681100 AT3G50520.1 29.630 162 109 5 66 223 16 176 3.83e-11 63.5

Find 137 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGAATGTAGAGTTAT+TGG 0.166217 4_4:+41046548 Msa0681100:CDS
TCCTCAGTTGGTCTTGTAAT+AGG 0.238461 4_4:-41052309 None:intergenic
TTAAGCGATTAAGGCAAATA+TGG 0.259672 4_4:-41049037 None:intergenic
ATACCTGATTTAAGCGATTA+AGG 0.266913 4_4:-41049046 None:intergenic
AAAAGCCTGGCAATCCCTTT+TGG 0.280013 4_4:+41052059 Msa0681100:intron
GAGAGCCACCATCCGGTCTT+GGG 0.283196 4_4:-41049013 None:intergenic
TCTTCTTTCATTTAGTCCTT+TGG 0.294396 4_4:+41047680 Msa0681100:intron
ACTCTCTTTGCCACTTTCAA+TGG 0.319254 4_4:-41046591 None:intergenic
CCTGTTGCCGGAGGGAAATC+TGG 0.327424 4_4:+41049397 Msa0681100:CDS
CTGATTACGCCTCTTCCCTT+AGG 0.332020 4_4:-41052246 None:intergenic
AGAAAACCGCTGAAATCATT+TGG 0.339933 4_4:+41047712 Msa0681100:CDS
CAAAGAGAGTGGTGCTTGTT+AGG 0.341702 4_4:+41046604 Msa0681100:CDS
GGAGAGCCACCATCCGGTCT+TGG 0.344266 4_4:-41049014 None:intergenic
TCCCTCCAAGCAGGACGATA+TGG 0.349241 4_4:+41046286 Msa0681100:five_prime_UTR
TATATTTAAACAATCCAAAA+AGG 0.354844 4_4:+41051376 Msa0681100:CDS
TGCTCACAATGCTGTTAATC+AGG 0.362385 4_4:+41048803 Msa0681100:CDS
TTGCCTTAATCGCTTAAATC+AGG 0.367710 4_4:+41049043 Msa0681100:CDS
GAAAACCGCTGAAATCATTT+GGG 0.370490 4_4:+41047713 Msa0681100:CDS
GAAGAGGGAAAAGCGAGATT+TGG 0.378423 4_4:+41048642 Msa0681100:CDS
AGTCTCAGGCTGAGACTTCT+AGG 0.383341 4_4:+41046703 Msa0681100:CDS
ACGCCTGGTTCACCTGTTGC+CGG 0.383600 4_4:+41049385 Msa0681100:CDS
CATCGGATATTTCATCCAAA+AGG 0.385034 4_4:-41052074 None:intergenic
CCTCAGTTGGTCTTGTAATA+GGG 0.385522 4_4:-41052308 None:intergenic
CCTCTTCCCTTAGGGCCATC+GGG 0.388137 4_4:-41052237 None:intergenic
GAAGAGAATGTAGAGTTATT+GGG 0.390847 4_4:+41046549 Msa0681100:CDS
AAGTGAGCTTACCTGGGATA+TGG 0.399580 4_4:-41050933 None:intergenic
GCCTCTTCCCTTAGGGCCAT+CGG 0.403434 4_4:-41052238 None:intergenic
ATGTACTCAGAGCAGTGTTC+AGG 0.406442 4_4:+41046521 Msa0681100:CDS
GCTCTTGTTGCCACAGCAAT+TGG 0.407190 4_4:+41048825 Msa0681100:CDS
GAACATGCTTGGTGTTATAC+AGG 0.408528 4_4:+41050750 Msa0681100:CDS
TTCATCCAAAAGGGATTGCC+AGG 0.409965 4_4:-41052064 None:intergenic
CCAGATTTCCCTCCGGCAAC+AGG 0.412487 4_4:-41049397 None:intergenic
CTAAGGGAAGAGGCGTAATC+AGG 0.416834 4_4:+41052247 Msa0681100:CDS
ACTCAGGAATAATTTGTTGT+TGG 0.422257 4_4:-41047743 None:intergenic
TGCGATTCACATAGGACTAA+TGG 0.424880 4_4:+41052137 Msa0681100:CDS
CATAAATTATACTGCACACT+TGG 0.431161 4_4:+41052272 Msa0681100:CDS
TTGAGTATGTCTTTGTAGAA+TGG 0.434150 4_4:-41046479 None:intergenic
TAAGCGATTAAGGCAAATAT+GGG 0.435727 4_4:-41049036 None:intergenic
ACAAGAGGCTGCAGATTGCT+TGG 0.435741 4_4:+41051292 Msa0681100:CDS
GCCATTCCTCGGTCAAGTTA+AGG 0.439985 4_4:-41052167 None:intergenic
TGCAACTGTCACTCACTACT+TGG 0.441566 4_4:-41046385 None:intergenic
TTCCATATCGTCCTGCTTGG+AGG 0.442054 4_4:-41046288 None:intergenic
TACATCGAACGATGATGAAT+CGG 0.444206 4_4:-41046503 None:intergenic
CGACTTCCCCGATGGCCCTA+AGG 0.448276 4_4:+41052230 Msa0681100:CDS
TGATTACGCCTCTTCCCTTA+GGG 0.450519 4_4:-41052245 None:intergenic
TGTAAAGAAGAGGAACAAAA+AGG 0.451047 4_4:-41046435 None:intergenic
TAGGGTTTGTTGAAGGAAGA+GGG 0.454048 4_4:+41048627 Msa0681100:intron
ACTTTGATGCTTGTTTCTCC+AGG 0.455076 4_4:+41046745 Msa0681100:CDS
GTCTCAATAGAAGATTTGTT+AGG 0.456589 4_4:-41050902 None:intergenic
CTTGTTTCCTCCATTGAAAG+TGG 0.458735 4_4:+41046581 Msa0681100:CDS
TACTAAGAAAGGTGAGTCTC+AGG 0.462085 4_4:+41046689 Msa0681100:CDS
GGGAAAAGCGAGATTTGGTT+CGG 0.464623 4_4:+41048647 Msa0681100:CDS
TAACTTGACCGAGGAATGGC+TGG 0.464673 4_4:+41052170 Msa0681100:CDS
GAATCATTTCATCTTGATGC+AGG 0.464848 4_4:+41052192 Msa0681100:CDS
TGCTTCCATATCGTCCTGCT+TGG 0.466434 4_4:-41046291 None:intergenic
GAATGGAAATGATGATCAAA+GGG 0.468568 4_4:-41046462 None:intergenic
ATCGGATATTTCATCCAAAA+GGG 0.480025 4_4:-41052073 None:intergenic
TTAGGGTTTGTTGAAGGAAG+AGG 0.483503 4_4:+41048626 Msa0681100:intron
GTCACTCACTACTTGGAGTT+GGG 0.484498 4_4:-41046378 None:intergenic
TTAGGCATGGGCAGAGTACA+TGG 0.485010 4_4:+41046622 Msa0681100:CDS
TTTGTTAGGACTGCTAATTA+CGG 0.487442 4_4:-41050888 None:intergenic
CCTCCGGCAACAGGTGAACC+AGG 0.488230 4_4:-41049388 None:intergenic
ATACTGCACACTTGGGAAGA+TGG 0.493742 4_4:+41052280 Msa0681100:CDS
AATGCTGAAGGGAGGATTCA+AGG 0.496684 4_4:+41046645 Msa0681100:CDS
CAAGAGGCTGCAGATTGCTT+GGG 0.497705 4_4:+41051293 Msa0681100:CDS
CTCTTTGCCACTTTCAATGG+AGG 0.501348 4_4:-41046588 None:intergenic
AACTCTTCAACATCCTCAGT+TGG 0.510224 4_4:-41052321 None:intergenic
TTCTAAACAACCAGGTTTGG+AGG 0.512778 4_4:+41048932 Msa0681100:intron
AGTACAAATCGATTTCCCTT+AGG 0.513537 4_4:-41047770 None:intergenic
CCCGATGGCCCTAAGGGAAG+AGG 0.514495 4_4:+41052237 Msa0681100:CDS
TGTCACTCACTACTTGGAGT+TGG 0.520132 4_4:-41046379 None:intergenic
AGAATGGAAATGATGATCAA+AGG 0.520970 4_4:-41046463 None:intergenic
TGATAGCAGGTCTGTTCTTG+TGG 0.523560 4_4:+41048779 Msa0681100:CDS
GGGATCGTGCTAGAAGCTGC+TGG 0.524848 4_4:+41048739 Msa0681100:CDS
TTGATATTCTCCCTCCAAGC+AGG 0.524945 4_4:+41046277 Msa0681100:five_prime_UTR
AAATCCTAGCTCATGATAGC+AGG 0.525513 4_4:+41048766 Msa0681100:CDS
GCTTGATTTCACCCCAAGAC+CGG 0.528207 4_4:+41049001 Msa0681100:CDS
TCCATATCGTCCTGCTTGGA+GGG 0.528645 4_4:-41046287 None:intergenic
CAAACTGAAACTTACTTGAA+AGG 0.530301 4_4:-41047793 None:intergenic
ACATCGAACGATGATGAATC+GGG 0.535001 4_4:-41046502 None:intergenic
GACTTCCCCGATGGCCCTAA+GGG 0.535234 4_4:+41052231 Msa0681100:CDS
AGAGCCACCATCCGGTCTTG+GGG 0.541029 4_4:-41049012 None:intergenic
GACAGTTGCACAGTAAGTAA+TGG 0.541525 4_4:+41046398 Msa0681100:exon
GACAGCCATGGCCATATCCC+AGG 0.542139 4_4:+41050922 Msa0681100:CDS
ATATCCGATGAATCTAGATC+AGG 0.548576 4_4:+41052087 Msa0681100:CDS
AGAGTGGTGCTTGTTAGGCA+TGG 0.549142 4_4:+41046609 Msa0681100:CDS
CAGACCTGCTATCATGAGCT+AGG 0.555413 4_4:-41048770 None:intergenic
GAGTGGTGCTTGTTAGGCAT+GGG 0.556816 4_4:+41046610 Msa0681100:CDS
TTATTCCTGAGTATGACCTA+AGG 0.560311 4_4:+41047754 Msa0681100:CDS
TGTCATCCTGCGATTCACAT+AGG 0.563323 4_4:+41052129 Msa0681100:CDS
TATTCCTGAGTATGACCTAA+GGG 0.563674 4_4:+41047755 Msa0681100:CDS
ATTAGTCCTATGTGAATCGC+AGG 0.564925 4_4:-41052135 None:intergenic
GTCTCCTGATCTAGATTCAT+CGG 0.565501 4_4:-41052091 None:intergenic
CCTGGTTCACCTGTTGCCGG+AGG 0.565582 4_4:+41049388 Msa0681100:CDS
ATATGGGGAGAGCCACCATC+CGG 0.566177 4_4:-41049020 None:intergenic
GCTTACCTGGGATATGGCCA+TGG 0.566287 4_4:-41050927 None:intergenic
CGGATTGTACTTGTTTGCAA+CGG 0.567474 4_4:+41049439 Msa0681100:CDS
CAGAGTACATGGAATGCTGA+AGG 0.569870 4_4:+41046633 Msa0681100:CDS
AAATGATTCCAGCCATTCCT+CGG 0.573841 4_4:-41052178 None:intergenic
ACTTTACTTCAGAGCAATTG+TGG 0.577088 4_4:+41048969 Msa0681100:CDS
TTATCCTGTGAGAGAGCTGT+GGG 0.579291 4_4:+41048719 Msa0681100:CDS
TCTACCTCCAGATTTCCCTC+CGG 0.583778 4_4:-41049404 None:intergenic
AGTTGGTCTTGTAATAGGGA+TGG 0.585922 4_4:-41052304 None:intergenic
CGATCCCACAGCTCTCTCAC+AGG 0.588043 4_4:-41048723 None:intergenic
ATTTCCCTTAGGTCATACTC+AGG 0.591208 4_4:-41047759 None:intergenic
TAGGGCCATCGGGGAAGTCG+AGG 0.592788 4_4:-41052227 None:intergenic
ATAACACCAAGCATGTTCAA+TGG 0.594462 4_4:-41050745 None:intergenic
GAACTATTAATGCAGACGCC+TGG 0.601208 4_4:+41049370 Msa0681100:intron
AGCGTCCTCGACTTCCCCGA+TGG 0.603515 4_4:+41052222 Msa0681100:CDS
GCCTTAACTTGACCGAGGAA+TGG 0.603835 4_4:+41052166 Msa0681100:CDS
GTTTGCAACGGATCTACTCA+AGG 0.603864 4_4:+41049451 Msa0681100:CDS
AAAGGGAACATGTAAAGAAG+AGG 0.605020 4_4:-41046445 None:intergenic
GATTTCACCCCAAGACCGGA+TGG 0.607167 4_4:+41049005 Msa0681100:CDS
ATTGAAAGTGGCAAAGAGAG+TGG 0.607739 4_4:+41046593 Msa0681100:CDS
GATCAACCATTGAACATGCT+TGG 0.608336 4_4:+41050739 Msa0681100:CDS
CTCTTCCCTTAGGGCCATCG+GGG 0.609582 4_4:-41052236 None:intergenic
AATCATTTCATCTTGATGCA+GGG 0.611035 4_4:+41052193 Msa0681100:CDS
ATAAATTATACTGCACACTT+GGG 0.614541 4_4:+41052273 Msa0681100:CDS
CCCTATTACAAGACCAACTG+AGG 0.616960 4_4:+41052308 Msa0681100:CDS
CTGGTTCACCTGTTGCCGGA+GGG 0.618360 4_4:+41049389 Msa0681100:CDS
AAAACCGCTGAAATCATTTG+GGG 0.626544 4_4:+41047714 Msa0681100:CDS
ATTATCCTGTGAGAGAGCTG+TGG 0.631732 4_4:+41048718 Msa0681100:CDS
AGATCCCCAAATGATTTCAG+CGG 0.632339 4_4:-41047718 None:intergenic
AGAGTACATGGAATGCTGAA+GGG 0.633308 4_4:+41046634 Msa0681100:CDS
AGCAGGACGATATGGAAGCA+AGG 0.635058 4_4:+41046294 Msa0681100:five_prime_UTR
CTATGTTGAGACGAAGCAGA+AGG 0.640264 4_4:+41051334 Msa0681100:CDS
GAGGTAGAGAAGCAAGTAAG+CGG 0.642011 4_4:+41049419 Msa0681100:CDS
ATCTTCTATTGAGACAGCCA+TGG 0.648332 4_4:+41050910 Msa0681100:CDS
TGCTTCGTCTCAACATAGCG+TGG 0.649383 4_4:-41051329 None:intergenic
TGTTGAGACGAAGCAGAAGG+AGG 0.653414 4_4:+41051337 Msa0681100:CDS
AAGCGATTAAGGCAAATATG+GGG 0.655265 4_4:-41049035 None:intergenic
GAAACAGGTACCAATTGCTG+TGG 0.666188 4_4:-41048835 None:intergenic
TTCACCCCAAGACCGGATGG+TGG 0.675447 4_4:+41049008 Msa0681100:CDS
GTACATGGAATGCTGAAGGG+AGG 0.686892 4_4:+41046637 Msa0681100:CDS
GTTGCCGGAGGGAAATCTGG+AGG 0.702980 4_4:+41049400 Msa0681100:CDS
ATCTACTCAAGGAAATACAG+AGG 0.718527 4_4:+41049462 Msa0681100:CDS
GCACTGCCTTAACTTGACCG+AGG 0.730620 4_4:+41052161 Msa0681100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATAAAATAATTTTACA+AGG - chr4_4:41047853-41047872 None:intergenic 10.0%
!! TCAATATGTATATATATATA+AGG - chr4_4:41047982-41048001 None:intergenic 10.0%
!! AAAATATTAATTAGAAGAAT+GGG - chr4_4:41049871-41049890 None:intergenic 10.0%
!! AAAAATATTAATTAGAAGAA+TGG - chr4_4:41049872-41049891 None:intergenic 10.0%
!!! AGTTTCTTTTATAGTTTTTA+TGG - chr4_4:41047227-41047246 None:intergenic 15.0%
!! AAATATTAATTAGAAGAATG+GGG - chr4_4:41049870-41049889 None:intergenic 15.0%
!!! ATAATTTATTCCATACTTTT+CGG - chr4_4:41050064-41050083 None:intergenic 15.0%
!!! ACAAATTTTGGTTAATATTT+GGG + chr4_4:41050531-41050550 Msa0681100:intron 15.0%
!! TATATTTAAACAATCCAAAA+AGG + chr4_4:41051376-41051395 Msa0681100:CDS 15.0%
!!! ATTTTGTTTGTATGTTTGTA+TGG - chr4_4:41046324-41046343 None:intergenic 20.0%
!! TAGAAGTTAAAAATGTTGTA+TGG + chr4_4:41046916-41046935 Msa0681100:intron 20.0%
!! GTAAATAAAGACAAAAGTAA+TGG - chr4_4:41047899-41047918 None:intergenic 20.0%
!! CATAACTTAAATATAAACAC+AGG + chr4_4:41047918-41047937 Msa0681100:intron 20.0%
!! CTTATATTCAATAAGCTATT+AGG + chr4_4:41047951-41047970 Msa0681100:intron 20.0%
!!! ACATCCATAGTTTTAAATTA+TGG - chr4_4:41049183-41049202 None:intergenic 20.0%
!!! AATTTAAAACTATGGATGTA+CGG + chr4_4:41049184-41049203 Msa0681100:intron 20.0%
!! CGATATTTATTTCAAAAAGA+GGG - chr4_4:41049296-41049315 None:intergenic 20.0%
!! ACGATATTTATTTCAAAAAG+AGG - chr4_4:41049297-41049316 None:intergenic 20.0%
!! TGGCTAAAATGTAATATATA+AGG + chr4_4:41049495-41049514 Msa0681100:intron 20.0%
!! GGCTAAAATGTAATATATAA+GGG + chr4_4:41049496-41049515 Msa0681100:intron 20.0%
!!! ATATTTTTATGTTTAGCACA+AGG + chr4_4:41049884-41049903 Msa0681100:intron 20.0%
!!! TAATTTATTCCATACTTTTC+GGG - chr4_4:41050063-41050082 None:intergenic 20.0%
!!! CACAAATTTTGGTTAATATT+TGG + chr4_4:41050530-41050549 Msa0681100:intron 20.0%
!! TGTAACTAGTATATTAACAT+AGG - chr4_4:41051026-41051045 None:intergenic 20.0%
!! GTTCAAGTATAAAGTTTAAT+AGG - chr4_4:41051197-41051216 None:intergenic 20.0%
!! ATAGTAGTGATTCATTAAAT+CGG - chr4_4:41051758-41051777 None:intergenic 20.0%
!! CTAAACAATAAACCTTTAAT+AGG - chr4_4:41051828-41051847 None:intergenic 20.0%
!! TTTTCTGTTCTTACTAAGAA+AGG + chr4_4:41046678-41046697 Msa0681100:CDS 25.0%
! AACATTTACATACAGATAGA+TGG - chr4_4:41046784-41046803 None:intergenic 25.0%
! TGATGAGTTAGATTGAAATA+TGG + chr4_4:41047267-41047286 Msa0681100:intron 25.0%
! TGGTATATGATAGAACATTA+TGG + chr4_4:41047287-41047306 Msa0681100:intron 25.0%
!! TTTAATCACGTGTTATTAGA+AGG - chr4_4:41047518-41047537 None:intergenic 25.0%
! CAGTATTCTTCATTGTTTAT+TGG + chr4_4:41047614-41047633 Msa0681100:intron 25.0%
! AATGGAAATTTGAACTTTCA+AGG - chr4_4:41047881-41047900 None:intergenic 25.0%
! TTTCAGTAGCTTATTGAAAT+AGG + chr4_4:41048114-41048133 Msa0681100:intron 25.0%
!!! AATGCTTTAAGGTTTTTGAT+CGG + chr4_4:41048364-41048383 Msa0681100:intron 25.0%
! CATTCCATTCTATTAGATAT+CGG - chr4_4:41048478-41048497 None:intergenic 25.0%
! ATCATAAATAGTCCCTAAAA+AGG - chr4_4:41048572-41048591 None:intergenic 25.0%
!!! TGTTATTGGTCTTGTATTTT+AGG + chr4_4:41048608-41048627 Msa0681100:intron 25.0%
!!! GTTATTGGTCTTGTATTTTA+GGG + chr4_4:41048609-41048628 Msa0681100:intron 25.0%
! ATCATCAAAATTTCCTTAGA+GGG - chr4_4:41048862-41048881 None:intergenic 25.0%
!!! AGGAAATTTTGATGATCAAA+AGG + chr4_4:41048866-41048885 Msa0681100:intron 25.0%
!!! AATTTTGATGATCAAAAGGT+TGG + chr4_4:41048870-41048889 Msa0681100:intron 25.0%
!! CAGACCATAATTTAAAACTA+TGG + chr4_4:41049176-41049195 Msa0681100:intron 25.0%
! AATAGTTCGACTCTATTTAA+AGG - chr4_4:41049358-41049377 None:intergenic 25.0%
! TTAATAAAGAAATACCTCAC+AGG - chr4_4:41049568-41049587 None:intergenic 25.0%
!!! GATGTTTACTCATTTTTATG+TGG + chr4_4:41049708-41049727 Msa0681100:intron 25.0%
!!! ATGACACTTATGTTTTTAGT+TGG - chr4_4:41050128-41050147 None:intergenic 25.0%
! GAAAGACTTTATTCTGATAT+TGG + chr4_4:41050226-41050245 Msa0681100:intron 25.0%
! ATCCATTTATCAGAAATAAG+TGG + chr4_4:41050778-41050797 Msa0681100:intron 25.0%
! TCCATTTATCAGAAATAAGT+GGG + chr4_4:41050779-41050798 Msa0681100:intron 25.0%
!! CCACAATTTAATGATTTTAG+AGG - chr4_4:41051100-41051119 None:intergenic 25.0%
!!! CCTCTAAAATCATTAAATTG+TGG + chr4_4:41051097-41051116 Msa0681100:intron 25.0%
! CTAAAATCATTAAATTGTGG+CGG + chr4_4:41051100-41051119 Msa0681100:intron 25.0%
!!! TACTTGCAAGTTTTAAATTG+CGG - chr4_4:41051136-41051155 None:intergenic 25.0%
! TATACTTGAACTAGTGAATT+TGG + chr4_4:41051206-41051225 Msa0681100:intron 25.0%
! ATACTTGAACTAGTGAATTT+GGG + chr4_4:41051207-41051226 Msa0681100:intron 25.0%
!! AAACTGTTAGACATGATTTT+AGG + chr4_4:41051268-41051287 Msa0681100:intron 25.0%
!!! CTCACAAACTATTTGATTTT+AGG + chr4_4:41051452-41051471 Msa0681100:intron 25.0%
! ACATGAAATACTCGATTAAT+TGG - chr4_4:41051495-41051514 None:intergenic 25.0%
! TAATCGAGTATTTCATGTAT+AGG + chr4_4:41051497-41051516 Msa0681100:intron 25.0%
! GTACTAAGAAACATAGTTAT+CGG + chr4_4:41051603-41051622 Msa0681100:intron 25.0%
!! ACTATAGATTCATATTGACT+TGG - chr4_4:41051666-41051685 None:intergenic 25.0%
!! AAACTTTTCTCATTTATTGC+AGG + chr4_4:41051851-41051870 Msa0681100:intron 25.0%
! NNNNNATTATGGGATCAATC+TGG + chr4_4:41052036-41052055 Msa0681100:intron 25.0%
! ATAAATTATACTGCACACTT+GGG + chr4_4:41052273-41052292 Msa0681100:CDS 25.0%
TGTAAAGAAGAGGAACAAAA+AGG - chr4_4:41046438-41046457 None:intergenic 30.0%
GAATGGAAATGATGATCAAA+GGG - chr4_4:41046465-41046484 None:intergenic 30.0%
AGAATGGAAATGATGATCAA+AGG - chr4_4:41046466-41046485 None:intergenic 30.0%
TTGAGTATGTCTTTGTAGAA+TGG - chr4_4:41046482-41046501 None:intergenic 30.0%
AGAAGAGAATGTAGAGTTAT+TGG + chr4_4:41046548-41046567 Msa0681100:CDS 30.0%
GAAGAGAATGTAGAGTTATT+GGG + chr4_4:41046549-41046568 Msa0681100:CDS 30.0%
TTTACATACAGATAGATGGA+TGG - chr4_4:41046780-41046799 None:intergenic 30.0%
CAAGAATAAGATAAGCGTAA+CGG + chr4_4:41046969-41046988 Msa0681100:intron 30.0%
ATACACCATAGTCGAAAATA+TGG + chr4_4:41047088-41047107 Msa0681100:intron 30.0%
ATTGTTCAGTTGTTATCTGT+TGG - chr4_4:41047493-41047512 None:intergenic 30.0%
CAATGAAGAATACTGAATGT+TGG - chr4_4:41047609-41047628 None:intergenic 30.0%
AAAACACGAAATCAATGACA+TGG - chr4_4:41047649-41047668 None:intergenic 30.0%
TCTTCTTTCATTTAGTCCTT+TGG + chr4_4:41047680-41047699 Msa0681100:intron 30.0%
!! ACTCAGGAATAATTTGTTGT+TGG - chr4_4:41047746-41047765 None:intergenic 30.0%
CAAACTGAAACTTACTTGAA+AGG - chr4_4:41047796-41047815 None:intergenic 30.0%
! TTACAGTGAAATAAGTGTTG+AGG - chr4_4:41048019-41048038 None:intergenic 30.0%
AAGCTGTAAAAGTTTCACAT+AGG + chr4_4:41048291-41048310 Msa0681100:intron 30.0%
GATCAAAAACCTTAAAGCAT+TGG - chr4_4:41048365-41048384 None:intergenic 30.0%
AATGCCGATATCTAATAGAA+TGG + chr4_4:41048471-41048490 Msa0681100:intron 30.0%
TTTAGGGACTATTTATGATG+TGG + chr4_4:41048573-41048592 Msa0681100:intron 30.0%
!!! TGTATTTTAGGGTTTGTTGA+AGG + chr4_4:41048620-41048639 Msa0681100:intron 30.0%
GATCATCAAAATTTCCTTAG+AGG - chr4_4:41048863-41048882 None:intergenic 30.0%
TCGTAAGCACATAATTCAAA+TGG - chr4_4:41048904-41048923 None:intergenic 30.0%
TAAGCGATTAAGGCAAATAT+GGG - chr4_4:41049039-41049058 None:intergenic 30.0%
TTAAGCGATTAAGGCAAATA+TGG - chr4_4:41049040-41049059 None:intergenic 30.0%
ATACCTGATTTAAGCGATTA+AGG - chr4_4:41049049-41049068 None:intergenic 30.0%
!! TGAATTCTGAAGCTATCAAA+GGG - chr4_4:41049224-41049243 None:intergenic 30.0%
AATACAGAGGTAAGAAGAAA+TGG + chr4_4:41049475-41049494 Msa0681100:intron 30.0%
ATGCCAACTAATATTGCTAA+GGG - chr4_4:41049616-41049635 None:intergenic 30.0%
AATGCCAACTAATATTGCTA+AGG - chr4_4:41049617-41049636 None:intergenic 30.0%
GAATGAGTCAAATGAAAACT+TGG - chr4_4:41049652-41049671 None:intergenic 30.0%
!! TTGTCATGTTTTAAGCATCT+AGG - chr4_4:41049981-41050000 None:intergenic 30.0%
!! AAGAAGTATCTGAGATGTAT+CGG - chr4_4:41050104-41050123 None:intergenic 30.0%
CTAAAAACATAAGTGTCATC+TGG + chr4_4:41050129-41050148 Msa0681100:intron 30.0%
AGACTTTATTCTGATATTGG+TGG + chr4_4:41050229-41050248 Msa0681100:intron 30.0%
GACTTTATTCTGATATTGGT+GGG + chr4_4:41050230-41050249 Msa0681100:intron 30.0%
ACTTTATTCTGATATTGGTG+GGG + chr4_4:41050231-41050250 Msa0681100:intron 30.0%
!!! TGCACATTTTAAAGTCCAAT+TGG - chr4_4:41050294-41050313 None:intergenic 30.0%
! GTGCATTTATGCACAAATTT+TGG + chr4_4:41050519-41050538 Msa0681100:intron 30.0%
TTCCAAAAGCTTAGATTGTT+GGG - chr4_4:41050635-41050654 None:intergenic 30.0%
ATTCCAAAAGCTTAGATTGT+TGG - chr4_4:41050636-41050655 None:intergenic 30.0%
ACGAACTACCTTATTATAAC+AGG + chr4_4:41050696-41050715 Msa0681100:intron 30.0%
ACTACCTTATTATAACAGGA+CGG + chr4_4:41050700-41050719 Msa0681100:intron 30.0%
!! TCCCACTTATTTCTGATAAA+TGG - chr4_4:41050783-41050802 None:intergenic 30.0%
TTATCAGAAATAAGTGGGAA+TGG + chr4_4:41050784-41050803 Msa0681100:intron 30.0%
TTTGTTAGGACTGCTAATTA+CGG - chr4_4:41050891-41050910 None:intergenic 30.0%
! GTCTCAATAGAAGATTTGTT+AGG - chr4_4:41050905-41050924 None:intergenic 30.0%
GGACTAATAATTTAGCATGA+TGG - chr4_4:41050979-41050998 None:intergenic 30.0%
! CATAGGAAATAGTAGTTTGT+CGG - chr4_4:41051009-41051028 None:intergenic 30.0%
CACTACGAACATATATATTG+CGG + chr4_4:41051044-41051063 Msa0681100:intron 30.0%
CATATATATTGCGGTAAATG+TGG + chr4_4:41051053-41051072 Msa0681100:intron 30.0%
! CTGTAAGTTACTTACCTTTT+TGG - chr4_4:41051393-41051412 None:intergenic 30.0%
AAAATTCTATGACCATTGCT+TGG - chr4_4:41051534-41051553 None:intergenic 30.0%
ACCAATTGAAGAAATGTAGA+AGG + chr4_4:41051560-41051579 Msa0681100:intron 30.0%
TCCTTCTACATTTCTTCAAT+TGG - chr4_4:41051564-41051583 None:intergenic 30.0%
ACTTGGATAGAATTGAGATA+CGG - chr4_4:41051649-41051668 None:intergenic 30.0%
ATGATTCATCATAGTGAATC+AGG - chr4_4:41051732-41051751 None:intergenic 30.0%
TTCTCTACTCTTCCTATTAA+AGG + chr4_4:41051813-41051832 Msa0681100:intron 30.0%
! TCAACTTTATTTAACCATCC+AGG - chr4_4:41051903-41051922 None:intergenic 30.0%
ATCGGATATTTCATCCAAAA+GGG - chr4_4:41052076-41052095 None:intergenic 30.0%
AATCATTTCATCTTGATGCA+GGG + chr4_4:41052193-41052212 Msa0681100:CDS 30.0%
CATAAATTATACTGCACACT+TGG + chr4_4:41052272-41052291 Msa0681100:CDS 30.0%
AAAGGGAACATGTAAAGAAG+AGG - chr4_4:41046448-41046467 None:intergenic 35.0%
TACATCGAACGATGATGAAT+CGG - chr4_4:41046506-41046525 None:intergenic 35.0%
TGTTGTATGGAATAGAGTGT+TGG + chr4_4:41046929-41046948 Msa0681100:intron 35.0%
ATGATGTTGTGATGAATGTG+TGG + chr4_4:41046994-41047013 Msa0681100:intron 35.0%
! TTCCACCATATTTTCGACTA+TGG - chr4_4:41047096-41047115 None:intergenic 35.0%
! TCGAAAATATGGTGGAAACT+AGG + chr4_4:41047099-41047118 Msa0681100:intron 35.0%
! CGAAAATATGGTGGAAACTA+GGG + chr4_4:41047100-41047119 Msa0681100:intron 35.0%
AAACTAGGGTTAATGTGGTT+TGG + chr4_4:41047114-41047133 Msa0681100:intron 35.0%
AACTAGGGTTAATGTGGTTT+GGG + chr4_4:41047115-41047134 Msa0681100:intron 35.0%
!! AGGATTAGTCAAATCACTAG+AGG + chr4_4:41047190-41047209 Msa0681100:intron 35.0%
AGACATGTGTGAAGCTATTT+GGG - chr4_4:41047467-41047486 None:intergenic 35.0%
TAGACATGTGTGAAGCTATT+TGG - chr4_4:41047468-41047487 None:intergenic 35.0%
ATTTGCAGAAAACAGTTGAG+CGG - chr4_4:41047543-41047562 None:intergenic 35.0%
AGAAAACCGCTGAAATCATT+TGG + chr4_4:41047712-41047731 Msa0681100:CDS 35.0%
GAAAACCGCTGAAATCATTT+GGG + chr4_4:41047713-41047732 Msa0681100:CDS 35.0%
AAAACCGCTGAAATCATTTG+GGG + chr4_4:41047714-41047733 Msa0681100:CDS 35.0%
TTATTCCTGAGTATGACCTA+AGG + chr4_4:41047754-41047773 Msa0681100:CDS 35.0%
TATTCCTGAGTATGACCTAA+GGG + chr4_4:41047755-41047774 Msa0681100:CDS 35.0%
! AGTACAAATCGATTTCCCTT+AGG - chr4_4:41047773-41047792 None:intergenic 35.0%
TCACTAAAGCTTCGTAAACT+CGG + chr4_4:41047823-41047842 Msa0681100:intron 35.0%
TTCACTGTAAGAATAGAACC+TGG + chr4_4:41048029-41048048 Msa0681100:intron 35.0%
TCACTGTAAGAATAGAACCT+GGG + chr4_4:41048030-41048049 Msa0681100:intron 35.0%
ATAATGTGTGAGCAAGACTT+GGG - chr4_4:41048235-41048254 None:intergenic 35.0%
AATAATGTGTGAGCAAGACT+TGG - chr4_4:41048236-41048255 None:intergenic 35.0%
! TTTTACAGCACATCTCATAG+AGG - chr4_4:41048261-41048280 None:intergenic 35.0%
AGATGTGCTGTAAAATGCAA+AGG + chr4_4:41048266-41048285 Msa0681100:intron 35.0%
! AGTTTCACATAGGTTGACAA+TGG + chr4_4:41048301-41048320 Msa0681100:intron 35.0%
! GTTTCACATAGGTTGACAAT+GGG + chr4_4:41048302-41048321 Msa0681100:intron 35.0%
!! CCTTAAAGCATTGGATACAT+GGG - chr4_4:41048356-41048375 None:intergenic 35.0%
!! ACCTTAAAGCATTGGATACA+TGG - chr4_4:41048357-41048376 None:intergenic 35.0%
! TAAGGTTTTTGATCGGAACT+TGG + chr4_4:41048371-41048390 Msa0681100:intron 35.0%
!!! TTGGTGTCAGTTAATTTTCG+TGG + chr4_4:41048390-41048409 Msa0681100:intron 35.0%
! TATTAGATATCGGCATTGAG+AGG - chr4_4:41048468-41048487 None:intergenic 35.0%
! AATCAGTGTGTGCCTTTTTA+GGG + chr4_4:41048557-41048576 Msa0681100:intron 35.0%
ACTTTACTTCAGAGCAATTG+TGG + chr4_4:41048969-41048988 Msa0681100:CDS 35.0%
AAGCGATTAAGGCAAATATG+GGG - chr4_4:41049038-41049057 None:intergenic 35.0%
TTGCCTTAATCGCTTAAATC+AGG + chr4_4:41049043-41049062 Msa0681100:CDS 35.0%
TACATTTACTGCGTAGAATG+CGG + chr4_4:41049073-41049092 Msa0681100:intron 35.0%
!! CTGAATTCTGAAGCTATCAA+AGG - chr4_4:41049225-41049244 None:intergenic 35.0%
GTTTAACTATCTTCGCAATG+TGG + chr4_4:41049315-41049334 Msa0681100:intron 35.0%
ATCTACTCAAGGAAATACAG+AGG + chr4_4:41049462-41049481 Msa0681100:CDS 35.0%
TTATTTATTCCCATCCTGTG+AGG + chr4_4:41049551-41049570 Msa0681100:intron 35.0%
AAAGAAATACCTCACAGGAT+GGG - chr4_4:41049563-41049582 None:intergenic 35.0%
TAAAGAAATACCTCACAGGA+TGG - chr4_4:41049564-41049583 None:intergenic 35.0%
TGCCAACTAATATTGCTAAG+GGG - chr4_4:41049615-41049634 None:intergenic 35.0%
!! TGCAACAAACAAGTATTGGA+TGG - chr4_4:41049685-41049704 None:intergenic 35.0%
CCATTGCAACAAACAAGTAT+TGG - chr4_4:41049689-41049708 None:intergenic 35.0%
! CCAATACTTGTTTGTTGCAA+TGG + chr4_4:41049686-41049705 Msa0681100:intron 35.0%
! TCTTACGTTGGATTAGAAAG+AGG + chr4_4:41049766-41049785 Msa0681100:intron 35.0%
ATTAGAAGAATGGGGTTGAA+GGG - chr4_4:41049862-41049881 None:intergenic 35.0%
AATTAGAAGAATGGGGTTGA+AGG - chr4_4:41049863-41049882 None:intergenic 35.0%
TGTTTAGCACAAGGTAATGT+AGG + chr4_4:41049893-41049912 Msa0681100:intron 35.0%
TCAAAGTGTGGATAATGCAT+AGG - chr4_4:41049922-41049941 None:intergenic 35.0%
ATCCACACTTTGAGCTAAAA+TGG + chr4_4:41049929-41049948 Msa0681100:intron 35.0%
TAAAATGGCTCTTGCATGAT+GGG + chr4_4:41049944-41049963 Msa0681100:intron 35.0%
TATCGATATTGGGTACATGT+CGG - chr4_4:41050015-41050034 None:intergenic 35.0%
CTTTATTCTGATATTGGTGG+GGG + chr4_4:41050232-41050251 Msa0681100:intron 35.0%
!!! TTTTAAAGTCCAATTGGCCA+TGG - chr4_4:41050288-41050307 None:intergenic 35.0%
!! ATTTGGGTTTTGTCGTATCT+TGG + chr4_4:41050547-41050566 Msa0681100:intron 35.0%
CAAATGCAGTTCTTCATGTT+AGG + chr4_4:41050666-41050685 Msa0681100:intron 35.0%
AACACCGTCCTGTTATAATA+AGG - chr4_4:41050707-41050726 None:intergenic 35.0%
ATAACACCAAGCATGTTCAA+TGG - chr4_4:41050748-41050767 None:intergenic 35.0%
GAGACTGTTACACATGAAAA+AGG - chr4_4:41050829-41050848 None:intergenic 35.0%
!! GACATGATTTTAGGTACAAG+AGG + chr4_4:41051277-41051296 Msa0681100:intron 35.0%
GAAATGTAGAAGGAAACATG+TGG + chr4_4:41051570-41051589 Msa0681100:intron 35.0%
ATAGGAAGAGTAGAGAAAAG+TGG - chr4_4:41051810-41051829 None:intergenic 35.0%
CATCGGATATTTCATCCAAA+AGG - chr4_4:41052077-41052096 None:intergenic 35.0%
ATATCCGATGAATCTAGATC+AGG + chr4_4:41052087-41052106 Msa0681100:CDS 35.0%
GAATCATTTCATCTTGATGC+AGG + chr4_4:41052192-41052211 Msa0681100:CDS 35.0%
GACAGTTGCACAGTAAGTAA+TGG + chr4_4:41046398-41046417 Msa0681100:exon 40.0%
ACATCGAACGATGATGAATC+GGG - chr4_4:41046505-41046524 None:intergenic 40.0%
CTTGTTTCCTCCATTGAAAG+TGG + chr4_4:41046581-41046600 Msa0681100:CDS 40.0%
!! ACTCTCTTTGCCACTTTCAA+TGG - chr4_4:41046594-41046613 None:intergenic 40.0%
ATTGAAAGTGGCAAAGAGAG+TGG + chr4_4:41046593-41046612 Msa0681100:CDS 40.0%
AGAGTACATGGAATGCTGAA+GGG + chr4_4:41046634-41046653 Msa0681100:CDS 40.0%
TACTAAGAAAGGTGAGTCTC+AGG + chr4_4:41046689-41046708 Msa0681100:CDS 40.0%
! ACTTTGATGCTTGTTTCTCC+AGG + chr4_4:41046745-41046764 Msa0681100:CDS 40.0%
!! GTATGGAATAGAGTGTTGGA+TGG + chr4_4:41046933-41046952 Msa0681100:intron 40.0%
CACCATAGTCGAAAATATGG+TGG + chr4_4:41047091-41047110 Msa0681100:intron 40.0%
TACCTGTAGATGCTGTTGTA+AGG + chr4_4:41047151-41047170 Msa0681100:intron 40.0%
AAGGAGAGTAGATCAGATGA+AGG + chr4_4:41047170-41047189 Msa0681100:intron 40.0%
CTGCAAATGTACAATCTTGC+AGG + chr4_4:41047555-41047574 Msa0681100:intron 40.0%
CAAATGTACAATCTTGCAGG+AGG + chr4_4:41047558-41047577 Msa0681100:intron 40.0%
! GTTTTCTTTGATCGTGCCAA+AGG - chr4_4:41047699-41047718 None:intergenic 40.0%
AGATCCCCAAATGATTTCAG+CGG - chr4_4:41047721-41047740 None:intergenic 40.0%
ATTTCCCTTAGGTCATACTC+AGG - chr4_4:41047762-41047781 None:intergenic 40.0%
!! AGCAAGACTTGGGAAGTATT+TGG - chr4_4:41048225-41048244 None:intergenic 40.0%
CCCATGTATCCAATGCTTTA+AGG + chr4_4:41048353-41048372 Msa0681100:intron 40.0%
! AGGCACACACTGATTGAATT+CGG - chr4_4:41048552-41048571 None:intergenic 40.0%
! CAATCAGTGTGTGCCTTTTT+AGG + chr4_4:41048556-41048575 Msa0681100:intron 40.0%
!! TTAGGGTTTGTTGAAGGAAG+AGG + chr4_4:41048626-41048645 Msa0681100:intron 40.0%
!! TAGGGTTTGTTGAAGGAAGA+GGG + chr4_4:41048627-41048646 Msa0681100:intron 40.0%
!!! TTGGTTCGGCTTTTCATCAA+TGG + chr4_4:41048661-41048680 Msa0681100:CDS 40.0%
AAATCCTAGCTCATGATAGC+AGG + chr4_4:41048766-41048785 Msa0681100:CDS 40.0%
TGCTCACAATGCTGTTAATC+AGG + chr4_4:41048803-41048822 Msa0681100:CDS 40.0%
ATTTCCTTAGAGGGAGAAAC+AGG - chr4_4:41048853-41048872 None:intergenic 40.0%
TCACTGCATTCTAAACAACC+AGG + chr4_4:41048924-41048943 Msa0681100:intron 40.0%
GCATTCTAAACAACCAGGTT+TGG + chr4_4:41048929-41048948 Msa0681100:intron 40.0%
TTCTAAACAACCAGGTTTGG+AGG + chr4_4:41048932-41048951 Msa0681100:intron 40.0%
ACATTTACTGCGTAGAATGC+GGG + chr4_4:41049074-41049093 Msa0681100:intron 40.0%
AAAACTATGGATGTACGGCT+TGG + chr4_4:41049189-41049208 Msa0681100:intron 40.0%
TATCTTCGCAATGTGGACAT+CGG + chr4_4:41049322-41049341 Msa0681100:intron 40.0%
CGGATTGTACTTGTTTGCAA+CGG + chr4_4:41049439-41049458 Msa0681100:CDS 40.0%
TAATATTGCTAAGGGGCTGT+AGG - chr4_4:41049608-41049627 None:intergenic 40.0%
AGCCCCTTAGCAATATTAGT+TGG + chr4_4:41049610-41049629 Msa0681100:intron 40.0%
ATTCTTTAACTGCTCCTCCA+TGG + chr4_4:41049736-41049755 Msa0681100:intron 40.0%
! ACGTTGGATTAGAAAGAGGA+CGG + chr4_4:41049770-41049789 Msa0681100:intron 40.0%
TTAGCACAAGGTAATGTAGG+AGG + chr4_4:41049896-41049915 Msa0681100:intron 40.0%
!!! AGCCATTTTAGCTCAAAGTG+TGG - chr4_4:41049934-41049953 None:intergenic 40.0%
CTAAAATGGCTCTTGCATGA+TGG + chr4_4:41049943-41049962 Msa0681100:intron 40.0%
AAAATGGCTCTTGCATGATG+GGG + chr4_4:41049945-41049964 Msa0681100:intron 40.0%
! AAGTATCTGAGATGTATCGG+TGG - chr4_4:41050101-41050120 None:intergenic 40.0%
TGTGTAACAATCAGCGTGTT+TGG + chr4_4:41050260-41050279 Msa0681100:intron 40.0%
TTGTGAGGATCACAACAAGA+AGG - chr4_4:41050396-41050415 None:intergenic 40.0%
! CACCCAACAATCTAAGCTTT+TGG + chr4_4:41050630-41050649 Msa0681100:intron 40.0%
GATCAACCATTGAACATGCT+TGG + chr4_4:41050739-41050758 Msa0681100:CDS 40.0%
!! GAACATGCTTGGTGTTATAC+AGG + chr4_4:41050750-41050769 Msa0681100:CDS 40.0%
ATCTTCTATTGAGACAGCCA+TGG + chr4_4:41050910-41050929 Msa0681100:CDS 40.0%
TAGCAAAAGTGAGCTTACCT+GGG - chr4_4:41050942-41050961 None:intergenic 40.0%
! ATAGTAGTTTGTCGGCATGA+CGG - chr4_4:41051001-41051020 None:intergenic 40.0%
TTAAATTGTGGCGGCAATTG+TGG + chr4_4:41051109-41051128 Msa0681100:intron 40.0%
GTGTGTTTGTATATGCCTTG+AGG + chr4_4:41051417-41051436 Msa0681100:intron 40.0%
GAATGATCTTGACCAAGCAA+TGG + chr4_4:41051519-41051538 Msa0681100:intron 40.0%
TTTAACCATCCAGGCTGAAA+TGG - chr4_4:41051894-41051913 None:intergenic 40.0%
GTCTCCTGATCTAGATTCAT+CGG - chr4_4:41052094-41052113 None:intergenic 40.0%
ATTAGTCCTATGTGAATCGC+AGG - chr4_4:41052138-41052157 None:intergenic 40.0%
TGCGATTCACATAGGACTAA+TGG + chr4_4:41052137-41052156 Msa0681100:CDS 40.0%
AAATGATTCCAGCCATTCCT+CGG - chr4_4:41052181-41052200 None:intergenic 40.0%
!! AGTTGGTCTTGTAATAGGGA+TGG - chr4_4:41052307-41052326 None:intergenic 40.0%
!! CCTCAGTTGGTCTTGTAATA+GGG - chr4_4:41052311-41052330 None:intergenic 40.0%
!! TCCTCAGTTGGTCTTGTAAT+AGG - chr4_4:41052312-41052331 None:intergenic 40.0%
AACTCTTCAACATCCTCAGT+TGG - chr4_4:41052324-41052343 None:intergenic 40.0%
TTGATATTCTCCCTCCAAGC+AGG + chr4_4:41046277-41046296 Msa0681100:five_prime_UTR 45.0%
GTCACTCACTACTTGGAGTT+GGG - chr4_4:41046381-41046400 None:intergenic 45.0%
TGTCACTCACTACTTGGAGT+TGG - chr4_4:41046382-41046401 None:intergenic 45.0%
TGCAACTGTCACTCACTACT+TGG - chr4_4:41046388-41046407 None:intergenic 45.0%
ATGTACTCAGAGCAGTGTTC+AGG + chr4_4:41046521-41046540 Msa0681100:CDS 45.0%
!! CTCTTTGCCACTTTCAATGG+AGG - chr4_4:41046591-41046610 None:intergenic 45.0%
CAAAGAGAGTGGTGCTTGTT+AGG + chr4_4:41046604-41046623 Msa0681100:CDS 45.0%
CAGAGTACATGGAATGCTGA+AGG + chr4_4:41046633-41046652 Msa0681100:CDS 45.0%
AATGCTGAAGGGAGGATTCA+AGG + chr4_4:41046645-41046664 Msa0681100:CDS 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG + chr4_4:41047058-41047077 Msa0681100:intron 45.0%
GGTGGAAACTAGGGTTAATG+TGG + chr4_4:41047109-41047128 Msa0681100:intron 45.0%
CTCCTTACAACAGCATCTAC+AGG - chr4_4:41047156-41047175 None:intergenic 45.0%
!! GACTTGGGAAGTATTTGGAC+TGG - chr4_4:41048220-41048239 None:intergenic 45.0%
GGTGTGACACACGTTGTTAT+TGG + chr4_4:41048594-41048613 Msa0681100:intron 45.0%
GAAGAGGGAAAAGCGAGATT+TGG + chr4_4:41048642-41048661 Msa0681100:CDS 45.0%
! GGGAAAAGCGAGATTTGGTT+CGG + chr4_4:41048647-41048666 Msa0681100:CDS 45.0%
! TTCGGCTTTTCATCAATGGC+AGG + chr4_4:41048665-41048684 Msa0681100:CDS 45.0%
ATTATCCTGTGAGAGAGCTG+TGG + chr4_4:41048718-41048737 Msa0681100:CDS 45.0%
TTATCCTGTGAGAGAGCTGT+GGG + chr4_4:41048719-41048738 Msa0681100:CDS 45.0%
TGATAGCAGGTCTGTTCTTG+TGG + chr4_4:41048779-41048798 Msa0681100:CDS 45.0%
GAAACAGGTACCAATTGCTG+TGG - chr4_4:41048838-41048857 None:intergenic 45.0%
AAGTAATCTGCCTCCAAACC+TGG - chr4_4:41048945-41048964 None:intergenic 45.0%
CAGCATCACAATCGCAATTG+CGG - chr4_4:41049109-41049128 None:intergenic 45.0%
!! CGAGACCTCTAAAACCGTTA+TGG + chr4_4:41049133-41049152 Msa0681100:intron 45.0%
!! CCTCTAAAACCGTTATGGTG+CGG + chr4_4:41049138-41049157 Msa0681100:intron 45.0%
CAATTGTGACCGCACCATAA+CGG - chr4_4:41049150-41049169 None:intergenic 45.0%
GAACTATTAATGCAGACGCC+TGG + chr4_4:41049370-41049389 Msa0681100:intron 45.0%
GAGGTAGAGAAGCAAGTAAG+CGG + chr4_4:41049419-41049438 Msa0681100:CDS 45.0%
GTTTGCAACGGATCTACTCA+AGG + chr4_4:41049451-41049470 Msa0681100:CDS 45.0%
CAACGTAAGACTGCTTTCCA+TGG - chr4_4:41049756-41049775 None:intergenic 45.0%
CATGGAAAGCAGTCTTACGT+TGG + chr4_4:41049754-41049773 Msa0681100:intron 45.0%
GTCGGACGCTTATCGATATT+GGG - chr4_4:41050025-41050044 None:intergenic 45.0%
TGTCGGACGCTTATCGATAT+TGG - chr4_4:41050026-41050045 None:intergenic 45.0%
TGATGCGTACCCGAAAAGTA+TGG + chr4_4:41050051-41050070 Msa0681100:intron 45.0%
! AATCAGCGTGTTTGGAACCA+TGG + chr4_4:41050268-41050287 Msa0681100:intron 45.0%
! TGTTTGGAACCATGGCCAAT+TGG + chr4_4:41050276-41050295 Msa0681100:intron 45.0%
! GTTGGGTGAAAGCACATGAA+AGG - chr4_4:41050618-41050637 None:intergenic 45.0%
!!! CAGGACGGTGTTCTTTTTTC+TGG + chr4_4:41050715-41050734 Msa0681100:intron 45.0%
AAGTGAGCTTACCTGGGATA+TGG - chr4_4:41050936-41050955 None:intergenic 45.0%
GTAGCAAAAGTGAGCTTACC+TGG - chr4_4:41050943-41050962 None:intergenic 45.0%
! TAGTAGTTTGTCGGCATGAC+GGG - chr4_4:41051000-41051019 None:intergenic 45.0%
GGTAAATGTGGCCACAATTG+TGG + chr4_4:41051065-41051084 Msa0681100:intron 45.0%
GGTCTTTGCAACCACAATTG+TGG - chr4_4:41051079-41051098 None:intergenic 45.0%
CTATGTTGAGACGAAGCAGA+AGG + chr4_4:41051334-41051353 Msa0681100:CDS 45.0%
GAGTGACAAATCATGCCTCA+AGG - chr4_4:41051435-41051454 None:intergenic 45.0%
AGGCTGAAATGGAGGAAAAC+TGG - chr4_4:41051883-41051902 None:intergenic 45.0%
! AGTTTTCCTCCATTTCAGCC+TGG + chr4_4:41051882-41051901 Msa0681100:intron 45.0%
! AAAAGCCTGGCAATCCCTTT+TGG + chr4_4:41052059-41052078 Msa0681100:intron 45.0%
TTCATCCAAAAGGGATTGCC+AGG - chr4_4:41052067-41052086 None:intergenic 45.0%
TGTCATCCTGCGATTCACAT+AGG + chr4_4:41052129-41052148 Msa0681100:CDS 45.0%
TGATTACGCCTCTTCCCTTA+GGG - chr4_4:41052248-41052267 None:intergenic 45.0%
ATACTGCACACTTGGGAAGA+TGG + chr4_4:41052280-41052299 Msa0681100:CDS 45.0%
CCCTATTACAAGACCAACTG+AGG + chr4_4:41052308-41052327 Msa0681100:CDS 45.0%
TCCATATCGTCCTGCTTGGA+GGG - chr4_4:41046290-41046309 None:intergenic 50.0%
TTCCATATCGTCCTGCTTGG+AGG - chr4_4:41046291-41046310 None:intergenic 50.0%
TGCTTCCATATCGTCCTGCT+TGG - chr4_4:41046294-41046313 None:intergenic 50.0%
AGCAGGACGATATGGAAGCA+AGG + chr4_4:41046294-41046313 Msa0681100:five_prime_UTR 50.0%
! AGAGTGGTGCTTGTTAGGCA+TGG + chr4_4:41046609-41046628 Msa0681100:CDS 50.0%
! GAGTGGTGCTTGTTAGGCAT+GGG + chr4_4:41046610-41046629 Msa0681100:CDS 50.0%
TTAGGCATGGGCAGAGTACA+TGG + chr4_4:41046622-41046641 Msa0681100:CDS 50.0%
GTACATGGAATGCTGAAGGG+AGG + chr4_4:41046637-41046656 Msa0681100:CDS 50.0%
AGTCTCAGGCTGAGACTTCT+AGG + chr4_4:41046703-41046722 Msa0681100:CDS 50.0%
GATGGATGGATAGACAGACC+TGG - chr4_4:41046766-41046785 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG + chr4_4:41047057-41047076 Msa0681100:intron 50.0%
GAGAGAGAGAGAGAGAGTTG+GGG + chr4_4:41047059-41047078 Msa0681100:intron 50.0%
CTTATCCCACGAAGTGGGAT+CGG - chr4_4:41047332-41047351 None:intergenic 50.0%
! CAAGCCTTATCCCACGAAGT+GGG - chr4_4:41047337-41047356 None:intergenic 50.0%
CCTCGATTCTGATCTAACCC+AGG - chr4_4:41048050-41048069 None:intergenic 50.0%
! CCTGGGTTAGATCAGAATCG+AGG + chr4_4:41048047-41048066 Msa0681100:intron 50.0%
AGAGGAAGCCTGAGAGAGAA+CGG - chr4_4:41048450-41048469 None:intergenic 50.0%
! GGCTTTTCATCAATGGCAGG+TGG + chr4_4:41048668-41048687 Msa0681100:CDS 50.0%
CAGACCTGCTATCATGAGCT+AGG - chr4_4:41048773-41048792 None:intergenic 50.0%
GCTCTTGTTGCCACAGCAAT+TGG + chr4_4:41048825-41048844 Msa0681100:CDS 50.0%
! GGTACCTGTTTCTCCCTCTA+AGG + chr4_4:41048846-41048865 Msa0681100:intron 50.0%
GCTTGATTTCACCCCAAGAC+CGG + chr4_4:41049001-41049020 Msa0681100:CDS 50.0%
!! CCGCACCATAACGGTTTTAG+AGG - chr4_4:41049141-41049160 None:intergenic 50.0%
!! CGCAATGTGGACATCGGTTT+AGG + chr4_4:41049328-41049347 Msa0681100:intron 50.0%
TCTACCTCCAGATTTCCCTC+CGG - chr4_4:41049407-41049426 None:intergenic 50.0%
CGTAAGACTGCTTTCCATGG+AGG - chr4_4:41049753-41049772 None:intergenic 50.0%
! TCTTGCATGATGGGGTGCTA+TGG + chr4_4:41049953-41049972 Msa0681100:intron 50.0%
! GGGTACGCATCAGAAAGTGT+CGG - chr4_4:41050043-41050062 None:intergenic 50.0%
! CTTGCGAGTTGTGACTTGTG+AGG - chr4_4:41050411-41050430 None:intergenic 50.0%
TAAGAAGCCCAGACACGACT+TGG - chr4_4:41050580-41050599 None:intergenic 50.0%
AAGTCGTGTCTGGGCTTCTT+AGG + chr4_4:41050579-41050598 Msa0681100:intron 50.0%
ACAAGAGGCTGCAGATTGCT+TGG + chr4_4:41051292-41051311 Msa0681100:CDS 50.0%
CAAGAGGCTGCAGATTGCTT+GGG + chr4_4:41051293-41051312 Msa0681100:CDS 50.0%
TGCTTCGTCTCAACATAGCG+TGG - chr4_4:41051332-41051351 None:intergenic 50.0%
TGTTGAGACGAAGCAGAAGG+AGG + chr4_4:41051337-41051356 Msa0681100:CDS 50.0%
TTCCTCCATTTCAGCCTGGA+TGG + chr4_4:41051886-41051905 Msa0681100:intron 50.0%
AACCATCCAGGCTGAAATGG+AGG - chr4_4:41051891-41051910 None:intergenic 50.0%
GGGATCAATCTGGAAAAGCC+TGG + chr4_4:41052046-41052065 Msa0681100:intron 50.0%
! GCCTTAACTTGACCGAGGAA+TGG + chr4_4:41052166-41052185 Msa0681100:CDS 50.0%
GCCATTCCTCGGTCAAGTTA+AGG - chr4_4:41052170-41052189 None:intergenic 50.0%
TAACTTGACCGAGGAATGGC+TGG + chr4_4:41052170-41052189 Msa0681100:CDS 50.0%
CTGATTACGCCTCTTCCCTT+AGG - chr4_4:41052249-41052268 None:intergenic 50.0%
! CTAAGGGAAGAGGCGTAATC+AGG + chr4_4:41052247-41052266 Msa0681100:CDS 50.0%
TCCCTCCAAGCAGGACGATA+TGG + chr4_4:41046286-41046305 Msa0681100:five_prime_UTR 55.0%
ACGAAGTGGGATCGGCTACA+TGG - chr4_4:41047324-41047343 None:intergenic 55.0%
ATGTAGCCGATCCCACTTCG+TGG + chr4_4:41047323-41047342 Msa0681100:intron 55.0%
TGTAGCCGATCCCACTTCGT+GGG + chr4_4:41047324-41047343 Msa0681100:intron 55.0%
CGATCCCACTTCGTGGGATA+AGG + chr4_4:41047330-41047349 Msa0681100:intron 55.0%
! CCAAGCCTTATCCCACGAAG+TGG - chr4_4:41047338-41047357 None:intergenic 55.0%
CCACTTCGTGGGATAAGGCT+TGG + chr4_4:41047335-41047354 Msa0681100:intron 55.0%
! CGGGGTGGAGCTCTAATCAA+TGG - chr4_4:41048430-41048449 None:intergenic 55.0%
AGGAAGCCTGAGAGAGAACG+GGG - chr4_4:41048448-41048467 None:intergenic 55.0%
GAGGAAGCCTGAGAGAGAAC+GGG - chr4_4:41048449-41048468 None:intergenic 55.0%
GATTTCACCCCAAGACCGGA+TGG + chr4_4:41049005-41049024 Msa0681100:CDS 55.0%
ATATGGGGAGAGCCACCATC+CGG - chr4_4:41049023-41049042 None:intergenic 55.0%
TCCCTGTCCAAGTCGTGTCT+GGG + chr4_4:41050570-41050589 Msa0681100:intron 55.0%
GCTTACCTGGGATATGGCCA+TGG - chr4_4:41050930-41050949 None:intergenic 55.0%
! GCACTGCCTTAACTTGACCG+AGG + chr4_4:41052161-41052180 Msa0681100:CDS 55.0%
AAGCCTGAGAGAGAACGGGG+TGG - chr4_4:41048445-41048464 None:intergenic 60.0%
CGATCCCACAGCTCTCTCAC+AGG - chr4_4:41048726-41048745 None:intergenic 60.0%
GGGATCGTGCTAGAAGCTGC+TGG + chr4_4:41048739-41048758 Msa0681100:CDS 60.0%
TTCACCCCAAGACCGGATGG+TGG + chr4_4:41049008-41049027 Msa0681100:CDS 60.0%
AGAGCCACCATCCGGTCTTG+GGG - chr4_4:41049015-41049034 None:intergenic 60.0%
GAGAGCCACCATCCGGTCTT+GGG - chr4_4:41049016-41049035 None:intergenic 60.0%
ACGCCTGGTTCACCTGTTGC+CGG + chr4_4:41049385-41049404 Msa0681100:CDS 60.0%
CTGGTTCACCTGTTGCCGGA+GGG + chr4_4:41049389-41049408 Msa0681100:CDS 60.0%
CCAGATTTCCCTCCGGCAAC+AGG - chr4_4:41049400-41049419 None:intergenic 60.0%
CCTGTTGCCGGAGGGAAATC+TGG + chr4_4:41049397-41049416 Msa0681100:CDS 60.0%
GTTGCCGGAGGGAAATCTGG+AGG + chr4_4:41049400-41049419 Msa0681100:CDS 60.0%
GTCCCTGTCCAAGTCGTGTC+TGG + chr4_4:41050569-41050588 Msa0681100:intron 60.0%
! GCCCAGACACGACTTGGACA+GGG - chr4_4:41050574-41050593 None:intergenic 60.0%
! AGCCCAGACACGACTTGGAC+AGG - chr4_4:41050575-41050594 None:intergenic 60.0%
GACAGCCATGGCCATATCCC+AGG + chr4_4:41050922-41050941 Msa0681100:CDS 60.0%
GACTTCCCCGATGGCCCTAA+GGG + chr4_4:41052231-41052250 Msa0681100:CDS 60.0%
CTCTTCCCTTAGGGCCATCG+GGG - chr4_4:41052239-41052258 None:intergenic 60.0%
CCTCTTCCCTTAGGGCCATC+GGG - chr4_4:41052240-41052259 None:intergenic 60.0%
GCCTCTTCCCTTAGGGCCAT+CGG - chr4_4:41052241-41052260 None:intergenic 60.0%
GCTCCACCCCGTTCTCTCTC+AGG + chr4_4:41048439-41048458 Msa0681100:intron 65.0%
GGAGAGCCACCATCCGGTCT+TGG - chr4_4:41049017-41049036 None:intergenic 65.0%
CCTCCGGCAACAGGTGAACC+AGG - chr4_4:41049391-41049410 None:intergenic 65.0%
CCTGGTTCACCTGTTGCCGG+AGG + chr4_4:41049388-41049407 Msa0681100:CDS 65.0%
AGCGTCCTCGACTTCCCCGA+TGG + chr4_4:41052222-41052241 Msa0681100:CDS 65.0%
TAGGGCCATCGGGGAAGTCG+AGG - chr4_4:41052230-41052249 None:intergenic 65.0%
CGACTTCCCCGATGGCCCTA+AGG + chr4_4:41052230-41052249 Msa0681100:CDS 65.0%
CCCGATGGCCCTAAGGGAAG+AGG + chr4_4:41052237-41052256 Msa0681100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 41046261 41052347 41046261 ID=Msa0681100;Name=Msa0681100
chr4_4 mRNA 41046261 41052347 41046261 ID=Msa0681100-mRNA-1;Parent=Msa0681100;Name=Msa0681100-mRNA-1;_AED=0.17;_eAED=0.18;_QI=156|0.88|0.8|1|1|1|10|0|481
chr4_4 exon 41046261 41046766 41046261 ID=Msa0681100-mRNA-1:exon:9736;Parent=Msa0681100-mRNA-1
chr4_4 exon 41047695 41047800 41047695 ID=Msa0681100-mRNA-1:exon:9737;Parent=Msa0681100-mRNA-1
chr4_4 exon 41048630 41048846 41048630 ID=Msa0681100-mRNA-1:exon:9738;Parent=Msa0681100-mRNA-1
chr4_4 exon 41048946 41049064 41048946 ID=Msa0681100-mRNA-1:exon:9739;Parent=Msa0681100-mRNA-1
chr4_4 exon 41049385 41049483 41049385 ID=Msa0681100-mRNA-1:exon:9740;Parent=Msa0681100-mRNA-1
chr4_4 exon 41050718 41050771 41050718 ID=Msa0681100-mRNA-1:exon:9741;Parent=Msa0681100-mRNA-1
chr4_4 exon 41050845 41050943 41050845 ID=Msa0681100-mRNA-1:exon:9742;Parent=Msa0681100-mRNA-1
chr4_4 exon 41051290 41051397 41051290 ID=Msa0681100-mRNA-1:exon:9743;Parent=Msa0681100-mRNA-1
chr4_4 exon 41051873 41051882 41051873 ID=Msa0681100-mRNA-1:exon:9744;Parent=Msa0681100-mRNA-1
chr4_4 exon 41052064 41052347 41052064 ID=Msa0681100-mRNA-1:exon:9745;Parent=Msa0681100-mRNA-1
chr4_4 five_prime_UTR 41046261 41046416 41046261 ID=Msa0681100-mRNA-1:five_prime_utr;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41046417 41046766 41046417 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41047695 41047800 41047695 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41048630 41048846 41048630 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41048946 41049064 41048946 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41049385 41049483 41049385 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41050718 41050771 41050718 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41050845 41050943 41050845 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41051290 41051397 41051290 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41051873 41051882 41051873 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
chr4_4 CDS 41052064 41052347 41052064 ID=Msa0681100-mRNA-1:cds;Parent=Msa0681100-mRNA-1
Gene Sequence

>Msa0681100

ATGGTTTTAGTAACAAGACCTTTTTGTTCCTCTTCTTTACATGTTCCCTTTGATCATCATTTCCATTCTACAAAGACATACTCAACCCGATTCATCATCGTTCGATGTACTCAGAGCAGTGTTCAGGAGATAGAAGAGAATGTAGAGTTATTGGGAAACTCAGTCTTGTTTCCTCCATTGAAAGTGGCAAAGAGAGTGGTGCTTGTTAGGCATGGGCAGAGTACATGGAATGCTGAAGGGAGGATTCAAGGTAGTTCTGATTTTTCTGTTCTTACTAAGAAAGGTGAGTCTCAGGCTGAGACTTCTAGGCAAATGCTTCTCGAAGACAACTTTGATGCTTGTTTCTCCAGTCCTTTGGCACGATCAAAGAAAACCGCTGAAATCATTTGGGGATCTCGCCAACAACAAATTATTCCTGAGTATGACCTAAGGGAAATCGATTTGTACTCCTTTCAAGGTTTGTTGAAGGAAGAGGGAAAAGCGAGATTTGGTTCGGCTTTTCATCAATGGCAGGTGGATGCTGTGAACTTCGTCATTGATGATCATTATCCTGTGAGAGAGCTGTGGGATCGTGCTAGAAGCTGCTGGACTAAAATCCTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTTTGGAGGCAGATTACTTTAGAACTTTACTTCAGAGCAATTGTGGTGTAAGTGTGCTTGATTTCACCCCAAGACCGGATGGTGGCTCTCCCCATATTTGCCTTAATCGCTTAAATCAGACGCCTGGTTCACCTGTTGCCGGAGGGAAATCTGGAGGTAGAGAAGCAAGTAAGCGGATTGTACTTGTTTGCAACGGATCTACTCAAGGAAATACAGAGGACGGTGTTCTTTTTTCTGGTGATCAACCATTGAACATGCTTGGTGTTATACAGTCTCAAAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAGTTCCGTAATTAGCAGTCCTAACAAATCTTCTATTGAGACAGCCATGGCCATATCCCAGGTACAAGAGGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCACGCTATGTTGAGACGAAGCAGAAGGAGGATCTTGATATTGAAACTATATTTAAACAATCCAAAAAGGATGTATCCACCTGGCAATCCCTTTTGGATGAAATATCCGATGAATCTAGATCAGGAGACGTCGTCGTTACAGTTTGTCATCCTGCGATTCACATAGGACTAATGGCGCACTGCCTTAACTTGACCGAGGAATGGCTGGAATCATTTCATCTTGATGCAGGGAGCATTAGCGTCCTCGACTTCCCCGATGGCCCTAAGGGAAGAGGCGTAATCAGGTGCATAAATTATACTGCACACTTGGGAAGATGGTCCATCCCTATTACAAGACCAACTGAGGATGTTGAAGAGTTTTAA

Protein sequence

>Msa0681100

MVLVTRPFCSSSLHVPFDHHFHSTKTYSTRFIIVRCTQSSVQEIEENVELLGNSVLFPPLKVAKRVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGESQAETSRQMLLEDNFDACFSSPLARSKKTAEIIWGSRQQQIIPEYDLREIDLYSFQGLLKEEGKARFGSAFHQWQVDAVNFVIDDHYPVRELWDRARSCWTKILAHDSRSVLVVAHNAVNQALVATAIGLEADYFRTLLQSNCGVSVLDFTPRPDGGSPHICLNRLNQTPGSPVAGGKSGGREASKRIVLVCNGSTQGNTEDGVLFSGDQPLNMLGVIQSQKSAELLLDLKVSSVISSPNKSSIETAMAISQVQEAADCLGADCVPRYVETKQKEDLDIETIFKQSKKDVSTWQSLLDEISDESRSGDVVVTVCHPAIHIGLMAHCLNLTEEWLESFHLDAGSISVLDFPDGPKGRGVIRCINYTAHLGRWSIPITRPTEDVEEF*