AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297490 MtrunA17_Chr4g0054691 99.462 186 1 0 1 186 1 186 2.01e-139 386
Msa1297490 MtrunA17_Chr1g0210631 39.535 86 52 0 74 159 133 218 5.33e-18 78.2
Msa1297490 MtrunA17_Chr4g0026331 29.452 146 100 1 14 159 13 155 1.08e-17 75.9
Msa1297490 MtrunA17_Chr1g0210661 38.824 85 52 0 74 158 69 153 1.79e-17 75.5
Msa1297490 MtrunA17_Chr2g0277481 40.244 82 49 0 77 158 67 148 1.92e-17 75.1
Msa1297490 MtrunA17_Chr8g0380641 36.585 82 52 0 77 158 65 146 1.12e-16 73.2
Msa1297490 MtrunA17_Chr2g0321501 33.721 86 57 0 74 159 70 155 1.73e-15 70.1
Msa1297490 MtrunA17_Chr5g0394481 31.373 102 67 2 63 164 51 149 9.49e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297490 AT1G32550.1 67.403 181 57 1 6 186 3 181 1.55e-86 252
Msa1297490 AT1G32550.2 60.914 197 56 3 6 186 3 194 3.35e-79 234
Msa1297490 AT2G27510.1 40.244 82 49 0 78 159 74 155 3.63e-17 75.1
Msa1297490 AT1G10960.1 38.667 75 46 0 84 158 73 147 6.58e-15 68.9
Msa1297490 AT1G60950.1 30.702 114 67 2 54 158 37 147 2.63e-14 67.4

Find 74 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGGCTTTGTATTAATAAA+TGG 0.191613 8_3:-57854452 None:intergenic
CCCTTGACTCACAGGTATAT+TGG 0.273197 8_3:+57859804 Msa1297490:intron
TTTGCATAGTATAGAAGATT+TGG 0.283845 8_3:+57860334 Msa1297490:three_prime_UTR
TAGAAGATTTGGCATGCTTT+TGG 0.287361 8_3:+57860345 Msa1297490:three_prime_UTR
CAGGTATATTGGCTTCAATT+TGG 0.291335 8_3:+57859815 Msa1297490:intron
TCTACTTCAAGATCAGAGTA+TGG 0.311983 8_3:-57857021 None:intergenic
TTGTTACAATGTGGTTCAAT+AGG 0.320510 8_3:+57860371 Msa1297490:three_prime_UTR
CTTATCCATTACTGTGCGTT+TGG 0.350556 8_3:-57860441 None:intergenic
TAACGGAAGCAAACGATTAC+CGG 0.393000 8_3:+57854546 Msa1297490:CDS
ATAATGTGAGAAAATGAAAA+TGG 0.394552 8_3:-57860147 None:intergenic
AATCGAACAACAACTACTAC+TGG 0.397418 8_3:-57854429 None:intergenic
CTGACACGCACATAACTTAC+GGG 0.425566 8_3:-57854349 None:intergenic
CAGCAGTATGCAATATATAT+TGG 0.427410 8_3:-57854762 None:intergenic
TCTGTCATTGATGTACCTTT+TGG 0.447476 8_3:+57860402 Msa1297490:three_prime_UTR
GATACGTGTCAAGCAGCAAT+TGG 0.460437 8_3:+57854288 Msa1297490:five_prime_UTR
TCGTGTTCAGTGTTTGTGTT+TGG 0.462056 8_3:+57860196 Msa1297490:three_prime_UTR
TTACCCTTCCATTCGCCTGC+AGG 0.464055 8_3:+57854797 Msa1297490:CDS
TGCGCTGTTCGTATAAAGAA+TGG 0.468923 8_3:+57856068 Msa1297490:CDS
ACGTACCTGCTCTCTCAATT+CGG 0.472163 8_3:-57856126 None:intergenic
GCTGACACGCACATAACTTA+CGG 0.474547 8_3:-57854350 None:intergenic
CTTCCATTCGCCTGCAGGCA+TGG 0.476506 8_3:+57854802 Msa1297490:CDS
GTCGACGGTGGCAGCAGCGA+CGG 0.493828 8_3:+57854502 Msa1297490:CDS
CTATCGGTGCTACAGAGAAA+AGG 0.494887 8_3:-57860041 None:intergenic
CTGAACCAAACGCACAGTAA+TGG 0.497127 8_3:+57860436 Msa1297490:three_prime_UTR
TGGTGATGCTCCAACTCATA+AGG 0.497863 8_3:+57854577 Msa1297490:CDS
ATTAAACAGCCAGAGGCACT+TGG 0.500897 8_3:+57856095 Msa1297490:CDS
TACTACTGGGAATTCGAAGA+AGG 0.516293 8_3:-57854415 None:intergenic
TTTGCTTCCGTTAGTCTCAC+CGG 0.521493 8_3:-57854536 None:intergenic
CAAACGCACAGTAATGGATA+AGG 0.522361 8_3:+57860442 Msa1297490:three_prime_UTR
CTGCTGCCACCGTCGACTTG+CGG 0.523336 8_3:-57854496 None:intergenic
GCGCTGTTCGTATAAAGAAT+GGG 0.523958 8_3:+57856069 Msa1297490:CDS
AGATGATTACGCCTTGGAGT+TGG 0.525321 8_3:+57859965 Msa1297490:CDS
TGCCACCGTCGACTTGCGGA+GGG 0.528786 8_3:-57854492 None:intergenic
TTGGAAAAGAATCTAACGGT+TGG 0.533894 8_3:+57854307 Msa1297490:five_prime_UTR
TTACGCCTTGGAGTTGGCCA+TGG 0.537209 8_3:+57859971 Msa1297490:CDS
CTGCCACCGTCGACTTGCGG+AGG 0.539461 8_3:-57854493 None:intergenic
CATGCCTGCAGGCGAATGGA+AGG 0.545098 8_3:-57854801 None:intergenic
CTACTTCAAGATCAGAGTAT+GGG 0.545399 8_3:-57857020 None:intergenic
GAGCATCACCACTAGGATAC+CGG 0.547091 8_3:-57854565 None:intergenic
AAAGTAAGTACCATGCCTGC+AGG 0.550244 8_3:-57854812 None:intergenic
AAAGAAGTTAGAGTCCTTGG+AGG 0.553195 8_3:+57854256 Msa1297490:five_prime_UTR
TAATTCAAACCTCAGGTACA+AGG 0.558777 8_3:-57854640 None:intergenic
ATCTGCCGAATTGAGAGAGC+AGG 0.560872 8_3:+57856121 Msa1297490:CDS
GGAAAGAGATGATTACGCCT+TGG 0.577081 8_3:+57859959 Msa1297490:intron
ACGTCTTCAATATGAACTAT+CGG 0.579743 8_3:-57860057 None:intergenic
TCAGCATTGACTCAACCAAA+AGG 0.579919 8_3:-57860417 None:intergenic
GCCTGCTTACTCGTCACCCA+TGG 0.581117 8_3:-57859988 None:intergenic
TACGCCTTGGAGTTGGCCAT+GGG 0.581629 8_3:+57859972 Msa1297490:CDS
TCAAACGCCGGTGAGACTAA+CGG 0.587698 8_3:+57854529 Msa1297490:CDS
ATCGAACAACAACTACTACT+GGG 0.588470 8_3:-57854428 None:intergenic
GTCACCCATGGCCAACTCCA+AGG 0.593375 8_3:-57859976 None:intergenic
GCCATGGGTGACGAGTAAGC+AGG 0.593531 8_3:+57859987 Msa1297490:exon
ACTACTGGGAATTCGAAGAA+GGG 0.593926 8_3:-57854414 None:intergenic
TCACGAATTCCTTGTACCTG+AGG 0.597412 8_3:+57854631 Msa1297490:CDS
TAAAACCCTCCGCAAGTCGA+CGG 0.598675 8_3:+57854487 Msa1297490:CDS
AGAATACACATATAAACATG+AGG 0.606206 8_3:-57860276 None:intergenic
TTAAACAGCCAGAGGCACTT+GGG 0.610944 8_3:+57856096 Msa1297490:CDS
GTTTATATGTGTATTCTCTG+TGG 0.614176 8_3:+57860282 Msa1297490:three_prime_UTR
TGAGTTGGAGCATCACCACT+AGG 0.621541 8_3:-57854572 None:intergenic
GCAATTGGAAAAGAATCTAA+CGG 0.626783 8_3:+57854303 Msa1297490:five_prime_UTR
AGAAACTCAAGATGAAGATG+AGG 0.630393 8_3:+57857041 Msa1297490:CDS
CTACTGGGAATTCGAAGAAG+GGG 0.636238 8_3:-57854413 None:intergenic
AGCGACGGAGCTTCAAACGC+CGG 0.637539 8_3:+57854517 Msa1297490:CDS
AACCCTCCGCAAGTCGACGG+TGG 0.642319 8_3:+57854490 Msa1297490:CDS
ATGCCTGCAGGCGAATGGAA+GGG 0.644285 8_3:-57854800 None:intergenic
GGTGCTACAGAGAAAAGGAA+AGG 0.645678 8_3:-57860036 None:intergenic
ACTTAGCTAAAGTCCTTGTG+AGG 0.648824 8_3:+57854229 Msa1297490:five_prime_UTR
GTATCGTCAAAACTCCTCCA+AGG 0.652925 8_3:-57854270 None:intergenic
GAATACACATATAAACATGA+GGG 0.663094 8_3:-57860275 None:intergenic
AACGATTACCGGTATCCTAG+TGG 0.663180 8_3:+57854557 Msa1297490:CDS
TGGGAAAATTAAACAGCCAG+AGG 0.663643 8_3:+57856088 Msa1297490:CDS
TATGAGTATCTGACACGTGT+TGG 0.664513 8_3:+57860081 Msa1297490:three_prime_UTR
TGAACTGTGACCTTATGAGT+TGG 0.666810 8_3:-57854587 None:intergenic
ACAGTTCACGATAGACAACG+AGG 0.785544 8_3:+57854602 Msa1297490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTCAATTTTCATT+AGG + chr8_3:57855703-57855722 Msa1297490:intron 10.0%
!! AAATTGAATCTATATATAAT+TGG - chr8_3:57855804-57855823 None:intergenic 10.0%
!! AAATAGAAATAAAATGAATA+AGG - chr8_3:57857299-57857318 None:intergenic 10.0%
!! ATTATGATTTATTCAAATTT+AGG + chr8_3:57858975-57858994 Msa1297490:intron 10.0%
!! CAATTCAATAAAATAGTTTA+AGG - chr8_3:57855080-57855099 None:intergenic 15.0%
!!! TATATTGATGTTTTATTCTT+TGG - chr8_3:57855481-57855500 None:intergenic 15.0%
!! TATGTTAAAAATATCAAACT+TGG - chr8_3:57855667-57855686 None:intergenic 15.0%
!! ATAAAAAAAGTTCATAAACA+TGG - chr8_3:57856156-57856175 None:intergenic 15.0%
!!! ATGAACTTTTTTTATTGAAT+CGG + chr8_3:57856161-57856180 Msa1297490:intron 15.0%
!! ATAACATGTATAAAGTATAA+TGG - chr8_3:57856353-57856372 None:intergenic 15.0%
!!! TAATCATAACTTTCATTTTA+TGG + chr8_3:57857079-57857098 Msa1297490:intron 15.0%
!! AAATATTCAAGAATATTCAA+AGG - chr8_3:57857207-57857226 None:intergenic 15.0%
!!! ATATTCTTGAATATTTTACA+CGG + chr8_3:57857211-57857230 Msa1297490:intron 15.0%
!! ATACTAAAACTAATTAAACA+TGG - chr8_3:57857327-57857346 None:intergenic 15.0%
!!! TTTTTGTAATTTCAAATAGA+AGG - chr8_3:57858091-57858110 None:intergenic 15.0%
!!! AAAATTAAGTTGTTAGAAAA+GGG - chr8_3:57858213-57858232 None:intergenic 15.0%
!!! AAAAATTAAGTTGTTAGAAA+AGG - chr8_3:57858214-57858233 None:intergenic 15.0%
!!! TCATTTTATAATTAGTGTTT+AGG - chr8_3:57858442-57858461 None:intergenic 15.0%
!! TTCAAATTTAGGAATTATTT+AGG + chr8_3:57858986-57859005 Msa1297490:intron 15.0%
!!! ATATAATTTGTGTGTTAAAA+AGG - chr8_3:57859936-57859955 None:intergenic 15.0%
!! AAGAAAAAAGAAGAAGAAAA+TGG + chr8_3:57854385-57854404 Msa1297490:exon 20.0%
!! CACATTAACATTGATATATA+CGG - chr8_3:57854719-57854738 None:intergenic 20.0%
!!! TTTTTTTGAAGAAGCTAAAT+TGG - chr8_3:57855232-57855251 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+GGG + chr8_3:57855534-57855553 Msa1297490:intron 20.0%
!!! TTCAATTTTCATTAGGTTAT+TGG + chr8_3:57855710-57855729 Msa1297490:intron 20.0%
!!! TTTTATGAACCTATCATATT+TGG + chr8_3:57855738-57855757 Msa1297490:intron 20.0%
!!! TTTCCATATGTAATTTGTAA+TGG + chr8_3:57855768-57855787 Msa1297490:intron 20.0%
!! TATATATAATTGGTAGGTAA+GGG - chr8_3:57855794-57855813 None:intergenic 20.0%
!! TGAATCTATATATAATTGGT+AGG - chr8_3:57855800-57855819 None:intergenic 20.0%
!!! TGCTTATTTGATACTTTTTA+TGG + chr8_3:57856028-57856047 Msa1297490:intron 20.0%
!!! TATTTGATACTTTTTATGGT+AGG + chr8_3:57856032-57856051 Msa1297490:intron 20.0%
!!! AGTATATACGTGTTTTTTTT+TGG + chr8_3:57856583-57856602 Msa1297490:intron 20.0%
!! AATATACAAACAATCATAAG+AGG - chr8_3:57856704-57856723 None:intergenic 20.0%
!!! TTACATTTTGATTTCTTTGT+TGG + chr8_3:57856724-57856743 Msa1297490:intron 20.0%
!!! TAAGCAAAAAACTACTTTTT+AGG - chr8_3:57858364-57858383 None:intergenic 20.0%
!! TGGATAAAATTATACTTATC+CGG + chr8_3:57859144-57859163 Msa1297490:intron 20.0%
!!! TCGTATTATTTTCATATGTT+GGG - chr8_3:57859423-57859442 None:intergenic 20.0%
!!! TCATATTATTTTCTTTCTTC+TGG + chr8_3:57859533-57859552 Msa1297490:intron 20.0%
!! ACTATTCTAATCAAATATTG+TGG + chr8_3:57859559-57859578 Msa1297490:intron 20.0%
!! TTAACACACAAATTATATAC+AGG + chr8_3:57859938-57859957 Msa1297490:intron 20.0%
!! ATAATGTGAGAAAATGAAAA+TGG - chr8_3:57860150-57860169 None:intergenic 20.0%
! CCTAATTCAATAGTTATATG+AGG - chr8_3:57854886-57854905 None:intergenic 25.0%
! CCTCATATAACTATTGAATT+AGG + chr8_3:57854883-57854902 Msa1297490:intron 25.0%
!! AAGGATTCTACTTCATTTTA+AGG - chr8_3:57855061-57855080 None:intergenic 25.0%
! TTGAATGAGTACAATAAAGA+AGG + chr8_3:57855278-57855297 Msa1297490:intron 25.0%
! TTATAAATAAGAGAAGACCA+AGG - chr8_3:57855385-57855404 None:intergenic 25.0%
!!! GATGGATTTTCATATACTTT+AGG + chr8_3:57855533-57855552 Msa1297490:intron 25.0%
!! TGGATTTTCATATACTTTAG+GGG + chr8_3:57855535-57855554 Msa1297490:intron 25.0%
! AACTAGTTATTATGGCTTAT+GGG + chr8_3:57855588-57855607 Msa1297490:intron 25.0%
! AAAAATATCAAACTTGGTAC+TGG - chr8_3:57855661-57855680 None:intergenic 25.0%
! AAAACAGAACCAAATATGAT+AGG - chr8_3:57855750-57855769 None:intergenic 25.0%
! CTATATATAATTGGTAGGTA+AGG - chr8_3:57855795-57855814 None:intergenic 25.0%
! CAAACATATATCAATCTAGA+GGG - chr8_3:57855974-57855993 None:intergenic 25.0%
! ATCAAATAAGCAACCAAATA+AGG - chr8_3:57856020-57856039 None:intergenic 25.0%
! TTTCAAGATTAGAATGAGAA+TGG - chr8_3:57856302-57856321 None:intergenic 25.0%
! TACATGTTATTATAGAGTAG+AGG + chr8_3:57856363-57856382 Msa1297490:intron 25.0%
! AATGTGAACATGTTTAGTAT+TGG - chr8_3:57856445-57856464 None:intergenic 25.0%
! AATAAAGTAAACTTGTAGAC+AGG - chr8_3:57856479-57856498 None:intergenic 25.0%
! GTTTACTTTATTCATTTGAC+AGG + chr8_3:57856487-57856506 Msa1297490:intron 25.0%
!!! CGCATTCATATTTTAATAAC+TGG - chr8_3:57856615-57856634 None:intergenic 25.0%
!! TTTGTTGGTGTTTCAATTTA+AGG + chr8_3:57856739-57856758 Msa1297490:intron 25.0%
!! TTGTTGGTGTTTCAATTTAA+GGG + chr8_3:57856740-57856759 Msa1297490:intron 25.0%
!! TAACTACTATAGTGGAAAAA+GGG - chr8_3:57856859-57856878 None:intergenic 25.0%
!! TTAACTACTATAGTGGAAAA+AGG - chr8_3:57856860-57856879 None:intergenic 25.0%
!! TTTTGTTCCATTTCATTTTC+AGG + chr8_3:57856972-57856991 Msa1297490:intron 25.0%
!! TTTGTTCCATTTCATTTTCA+GGG + chr8_3:57856973-57856992 Msa1297490:intron 25.0%
! AAAATATCTCACATTACTTC+TGG + chr8_3:57857177-57857196 Msa1297490:intron 25.0%
!! TTGTTGATTAGATGACTAAT+TGG - chr8_3:57857258-57857277 None:intergenic 25.0%
! ATATGACTTTCAAAAAGCAA+GGG - chr8_3:57857368-57857387 None:intergenic 25.0%
! AATATGACTTTCAAAAAGCA+AGG - chr8_3:57857369-57857388 None:intergenic 25.0%
! TGTCAATGCAAAACAAAAAT+AGG - chr8_3:57857455-57857474 None:intergenic 25.0%
!! TAATTTGGAGATCTTGTTTA+AGG + chr8_3:57857481-57857500 Msa1297490:intron 25.0%
!! AATTTGGAGATCTTGTTTAA+GGG + chr8_3:57857482-57857501 Msa1297490:intron 25.0%
!!! ATGTTGGTAGTAATCTTAAT+AGG + chr8_3:57857536-57857555 Msa1297490:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - chr8_3:57857601-57857620 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + chr8_3:57857636-57857655 Msa1297490:intron 25.0%
! ATAAGCTCTTGATTTATGTT+AGG + chr8_3:57857839-57857858 Msa1297490:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - chr8_3:57857601-57857620 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + chr8_3:57857636-57857655 Msa1297490:intron 25.0%
! ATTTCAAATAGAAGGAGTTT+AGG - chr8_3:57858083-57858102 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_3:57858374-57858393 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+TGG + chr8_3:57858374-57858393 Msa1297490:intron 25.0%
!! TAATTAGTGTTTAGGATAGT+GGG - chr8_3:57858434-57858453 None:intergenic 25.0%
!! ATAATTAGTGTTTAGGATAG+TGG - chr8_3:57858435-57858454 None:intergenic 25.0%
!! TATGATGCTTTTCTATTTGT+TGG + chr8_3:57858495-57858514 Msa1297490:intron 25.0%
!!! ATCAATACTCTAGTTTTCTT+TGG + chr8_3:57858537-57858556 Msa1297490:intron 25.0%
! GTTATCACTGAAATTATTGT+TGG - chr8_3:57858762-57858781 None:intergenic 25.0%
! TAAACATGGAAATCAAATCA+AGG - chr8_3:57858843-57858862 None:intergenic 25.0%
!!! TGAAAGATCATTACTGATTT+TGG + chr8_3:57858929-57858948 Msa1297490:intron 25.0%
! AGCTAAACAAGGAAATAATT+AGG - chr8_3:57859014-57859033 None:intergenic 25.0%
! GGATAAAATTATACTTATCC+GGG + chr8_3:57859145-57859164 Msa1297490:intron 25.0%
!! GTCGTATTATTTTCATATGT+TGG - chr8_3:57859424-57859443 None:intergenic 25.0%
! ATTGTGGTTGATTATTTAAC+CGG + chr8_3:57859575-57859594 Msa1297490:intron 25.0%
!!! TAAACTATGTTGTGTTTTTG+AGG + chr8_3:57859724-57859743 Msa1297490:intron 25.0%
!!! ACATGTTTTCTTTGATAATG+TGG + chr8_3:57859910-57859929 Msa1297490:intron 25.0%
! GAATACACATATAAACATGA+GGG - chr8_3:57860278-57860297 None:intergenic 25.0%
! AGAATACACATATAAACATG+AGG - chr8_3:57860279-57860298 None:intergenic 25.0%
! TTTGCATAGTATAGAAGATT+TGG + chr8_3:57860334-57860353 Msa1297490:three_prime_UTR 25.0%
!!! AACTTCTTTTTTTCCTCACA+AGG - chr8_3:57854245-57854264 None:intergenic 30.0%
AAAAAAGAAGTTAGAGTCCT+TGG + chr8_3:57854253-57854272 Msa1297490:five_prime_UTR 30.0%
GCAATTGGAAAAGAATCTAA+CGG + chr8_3:57854303-57854322 Msa1297490:five_prime_UTR 30.0%
! TGCGGCTTTGTATTAATAAA+TGG - chr8_3:57854455-57854474 None:intergenic 30.0%
AGATGATTAATTCAAACCTC+AGG - chr8_3:57854650-57854669 None:intergenic 30.0%
CAGCAGTATGCAATATATAT+TGG - chr8_3:57854765-57854784 None:intergenic 30.0%
AGGCAGTAATTTGAAAAAGA+TGG + chr8_3:57854953-57854972 Msa1297490:intron 30.0%
TTGAAAAAGATGGAAGTGAT+TGG + chr8_3:57854963-57854982 Msa1297490:intron 30.0%
AATTAGAGAGAATCTAGAGA+AGG + chr8_3:57855304-57855323 Msa1297490:intron 30.0%
CAATATGGGAAATATGAATG+TGG - chr8_3:57855412-57855431 None:intergenic 30.0%
AATGAGTCAAAGAGCTTAAA+GGG - chr8_3:57855436-57855455 None:intergenic 30.0%
TAATGAGTCAAAGAGCTTAA+AGG - chr8_3:57855437-57855456 None:intergenic 30.0%
TTTGACTCATTATAGCTACA+TGG + chr8_3:57855445-57855464 Msa1297490:intron 30.0%
TCTCTGCTATTAAGATGTTA+GGG + chr8_3:57855502-57855521 Msa1297490:intron 30.0%
! GACAGATTTTCATATGCTTT+AGG + chr8_3:57855565-57855584 Msa1297490:intron 30.0%
!! GCTTTAGGAACTAGTTATTA+TGG + chr8_3:57855580-57855599 Msa1297490:intron 30.0%
GAACTAGTTATTATGGCTTA+TGG + chr8_3:57855587-57855606 Msa1297490:intron 30.0%
ATTGGAGGGAATAATAGTTT+AGG + chr8_3:57855615-57855634 Msa1297490:intron 30.0%
TTGGAGGGAATAATAGTTTA+GGG + chr8_3:57855616-57855635 Msa1297490:intron 30.0%
TAGTTTAGGGACTAAATTGA+TGG + chr8_3:57855629-57855648 Msa1297490:intron 30.0%
!! GATATTTTTAACATACCCGT+AGG + chr8_3:57855672-57855691 Msa1297490:intron 30.0%
AAAAAATATCCTCTCTCCTA+CGG - chr8_3:57855691-57855710 None:intergenic 30.0%
ATCCATGTATAGTTGAAGTA+CGG + chr8_3:57855825-57855844 Msa1297490:intron 30.0%
AAATTTATCTTCCCTCCTAT+TGG + chr8_3:57855870-57855889 Msa1297490:intron 30.0%
AATTTATCTTCCCTCCTATT+GGG + chr8_3:57855871-57855890 Msa1297490:intron 30.0%
TAGATCATGTAATGCATCAT+TGG + chr8_3:57855921-57855940 Msa1297490:intron 30.0%
CCAAACATATATCAATCTAG+AGG - chr8_3:57855975-57855994 None:intergenic 30.0%
CCTCTAGATTGATATATGTT+TGG + chr8_3:57855972-57855991 Msa1297490:intron 30.0%
!!! TTGGTTTTTTATGCTATTCC+TGG + chr8_3:57855991-57856010 Msa1297490:intron 30.0%
TTCTTTAGCATCATTGAAGA+TGG - chr8_3:57856260-57856279 None:intergenic 30.0%
ATGTTATTATAGAGTAGAGG+AGG + chr8_3:57856366-57856385 Msa1297490:intron 30.0%
CAGGAAATAAGACATTGAAT+TGG + chr8_3:57856506-57856525 Msa1297490:intron 30.0%
!! TCTACTCAAACTCATTTTTC+TGG + chr8_3:57856672-57856691 Msa1297490:intron 30.0%
CTTAACTACTTGTTTGTGTT+AGG - chr8_3:57856767-57856786 None:intergenic 30.0%
AATATCTTCGTTCTGTTGTA+GGG - chr8_3:57856796-57856815 None:intergenic 30.0%
AAATATCTTCGTTCTGTTGT+AGG - chr8_3:57856797-57856816 None:intergenic 30.0%
!! CGAAGATATTTTTCAGCTTA+TGG + chr8_3:57856806-57856825 Msa1297490:intron 30.0%
GTAGTTGTTAACTACTATAG+TGG - chr8_3:57856867-57856886 None:intergenic 30.0%
TATAGTAGTTAACAACTACG+AGG + chr8_3:57856868-57856887 Msa1297490:intron 30.0%
AACAGAGAAATAAGAGACAT+TGG - chr8_3:57856935-57856954 None:intergenic 30.0%
! AATGTCTCTTATTTCTCTGT+TGG + chr8_3:57856934-57856953 Msa1297490:intron 30.0%
! AGTAATGTGAGATATTTTGC+AGG - chr8_3:57857175-57857194 None:intergenic 30.0%
! GAATATTTTACACGGTCTTT+AGG + chr8_3:57857219-57857238 Msa1297490:intron 30.0%
CTAATCAACAAAGCAATCTT+AGG + chr8_3:57857267-57857286 Msa1297490:intron 30.0%
TTGAAAGTCATATTAGACTC+AGG + chr8_3:57857375-57857394 Msa1297490:intron 30.0%
TTCTATTAAATGTGTCCATC+CGG - chr8_3:57857416-57857435 None:intergenic 30.0%
! GCATTGACAAGACTTTAATT+TGG + chr8_3:57857466-57857485 Msa1297490:intron 30.0%
AGATTACTACCAACATCTAT+TGG - chr8_3:57857532-57857551 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + chr8_3:57857637-57857656 Msa1297490:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG - chr8_3:57857963-57857982 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + chr8_3:57857637-57857656 Msa1297490:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG + chr8_3:57857963-57857982 Msa1297490:intron 30.0%
! TGAGAGCATATTGAGAAAAA+AGG - chr8_3:57858613-57858632 None:intergenic 30.0%
! TCTTTGTTTGTATGCTATTG+TGG + chr8_3:57858660-57858679 Msa1297490:intron 30.0%
!!! TTGGTTTTGTAATGTTAGCA+TGG + chr8_3:57858683-57858702 Msa1297490:intron 30.0%
TTCCCACTAATGAATTGTAA+TGG + chr8_3:57858786-57858805 Msa1297490:intron 30.0%
CACCATTACAATTCATTAGT+GGG - chr8_3:57858791-57858810 None:intergenic 30.0%
TCACCATTACAATTCATTAG+TGG - chr8_3:57858792-57858811 None:intergenic 30.0%
AAGAGGAAAACTGATAAACA+TGG - chr8_3:57858857-57858876 None:intergenic 30.0%
ATTAGGAAGTTTCAAACAAG+AGG - chr8_3:57858874-57858893 None:intergenic 30.0%
TCAAGAAATTACACACAACA+AGG - chr8_3:57858912-57858931 None:intergenic 30.0%
!! ACTGATTTTGGTCAAATGAT+CGG + chr8_3:57858941-57858960 Msa1297490:intron 30.0%
GAAATTTCAGAGCAAGTTAA+AGG - chr8_3:57859493-57859512 None:intergenic 30.0%
ACGTCTTCAATATGAACTAT+CGG - chr8_3:57860060-57860079 None:intergenic 30.0%
GTTTATATGTGTATTCTCTG+TGG + chr8_3:57860282-57860301 Msa1297490:three_prime_UTR 30.0%
! TTTTGGATCTTGTTACAATG+TGG + chr8_3:57860362-57860381 Msa1297490:three_prime_UTR 30.0%
TTGTTACAATGTGGTTCAAT+AGG + chr8_3:57860371-57860390 Msa1297490:three_prime_UTR 30.0%
TTGGAAAAGAATCTAACGGT+TGG + chr8_3:57854307-57854326 Msa1297490:five_prime_UTR 35.0%
ATCGAACAACAACTACTACT+GGG - chr8_3:57854431-57854450 None:intergenic 35.0%
AATCGAACAACAACTACTAC+TGG - chr8_3:57854432-57854451 None:intergenic 35.0%
!!! GTTTTAGAAGGAAGAGATTG+CGG - chr8_3:57854473-57854492 None:intergenic 35.0%
TAATTCAAACCTCAGGTACA+AGG - chr8_3:57854643-57854662 None:intergenic 35.0%
! TTTTCTACACATGCAACATC+TGG - chr8_3:57854688-57854707 None:intergenic 35.0%
TAAACGTGTTTGTGTCGTAT+TGG + chr8_3:57854992-57855011 Msa1297490:intron 35.0%
! ATTTCCATGCGTTATTTCCT+TGG + chr8_3:57855365-57855384 Msa1297490:intron 35.0%
ATGAGTCAAAGAGCTTAAAG+GGG - chr8_3:57855435-57855454 None:intergenic 35.0%
GTCTCTGCTATTAAGATGTT+AGG + chr8_3:57855501-57855520 Msa1297490:intron 35.0%
!! GATGTTAGGGATTAAGTTGA+TGG + chr8_3:57855515-57855534 Msa1297490:intron 35.0%
! TTATGGCTTATGGGCTAAAT+TGG + chr8_3:57855597-57855616 Msa1297490:intron 35.0%
AAAAATATCCTCTCTCCTAC+GGG - chr8_3:57855690-57855709 None:intergenic 35.0%
GGGCCATTACAAATTACATA+TGG - chr8_3:57855774-57855793 None:intergenic 35.0%
ATCCGTACTTCAACTATACA+TGG - chr8_3:57855830-57855849 None:intergenic 35.0%
ATGCATTACATGATCTACAC+AGG - chr8_3:57855918-57855937 None:intergenic 35.0%
CTATTCCTGGTTTCCTTATT+TGG + chr8_3:57856004-57856023 Msa1297490:intron 35.0%
CATCATTGAAGATGGTTGAT+GGG - chr8_3:57856252-57856271 None:intergenic 35.0%
CTTCAATGATGCTAAAGAAG+AGG + chr8_3:57856261-57856280 Msa1297490:intron 35.0%
!! AAAAGGGTGTTCATAGCAAA+TGG - chr8_3:57856843-57856862 None:intergenic 35.0%
GCATAACCCTGAAAATGAAA+TGG - chr8_3:57856982-57857001 None:intergenic 35.0%
CTACTTCAAGATCAGAGTAT+GGG - chr8_3:57857023-57857042 None:intergenic 35.0%
TCTACTTCAAGATCAGAGTA+TGG - chr8_3:57857024-57857043 None:intergenic 35.0%
AGAAACTCAAGATGAAGATG+AGG + chr8_3:57857041-57857060 Msa1297490:CDS 35.0%
CTGCTTAGTGATGATTTGAT+TGG - chr8_3:57857123-57857142 None:intergenic 35.0%
!! ACGGTCTTTAGGATATATAC+TGG + chr8_3:57857230-57857249 Msa1297490:intron 35.0%
CAAGGGTTTCAAAAGGAAAA+AGG - chr8_3:57857351-57857370 None:intergenic 35.0%
CAAAAAGCAAGGGTTTCAAA+AGG - chr8_3:57857358-57857377 None:intergenic 35.0%
ACATAAATCAAGAGCTAGTC+AGG - chr8_3:57857573-57857592 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + chr8_3:57857638-57857657 Msa1297490:intron 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG + chr8_3:57857671-57857690 Msa1297490:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG + chr8_3:57857679-57857698 Msa1297490:intron 35.0%
AAGGGAGAAAAGGAAATACA+AGG + chr8_3:57857689-57857708 Msa1297490:intron 35.0%
AGGGAGAAAAGGAAATACAA+GGG + chr8_3:57857690-57857709 Msa1297490:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG - chr8_3:57857679-57857698 None:intergenic 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG - chr8_3:57857671-57857690 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + chr8_3:57857638-57857657 Msa1297490:intron 35.0%
!! CATTTCTCAATAGGTTGGTT+GGG - chr8_3:57858040-57858059 None:intergenic 35.0%
!! TCATTTCTCAATAGGTTGGT+TGG - chr8_3:57858041-57858060 None:intergenic 35.0%
TGGAACAGCAGTTATGAAAT+GGG - chr8_3:57858137-57858156 None:intergenic 35.0%
CTAGCATAATTTCTCACGAT+GGG + chr8_3:57858184-57858203 Msa1297490:intron 35.0%
ATAATACACTATACTCCCTC+CGG + chr8_3:57858279-57858298 Msa1297490:intron 35.0%
TTGCTTATAAATGTGACTGG+AGG + chr8_3:57858377-57858396 Msa1297490:intron 35.0%
TGCTTATAAATGTGACTGGA+GGG + chr8_3:57858378-57858397 Msa1297490:intron 35.0%
!! AGAGTATTGATTGTCACAGT+TGG - chr8_3:57858528-57858547 None:intergenic 35.0%
TGTTTGTATGCTATTGTGGT+TGG + chr8_3:57858664-57858683 Msa1297490:intron 35.0%
! TAATGTTAGCATGGCATTGA+GGG + chr8_3:57858692-57858711 Msa1297490:intron 35.0%
! TAGAGAGCATAAGCTAAACA+AGG - chr8_3:57859025-57859044 None:intergenic 35.0%
TGCTCTCTAGATATCAGATT+TGG + chr8_3:57859036-57859055 Msa1297490:intron 35.0%
GCTCTCTAGATATCAGATTT+GGG + chr8_3:57859037-57859056 Msa1297490:intron 35.0%
TGCAGTTCGTACATCTAAAT+CGG + chr8_3:57859078-57859097 Msa1297490:intron 35.0%
AAGCTGTGTTTCTTTGTACT+CGG + chr8_3:57859196-57859215 Msa1297490:intron 35.0%
ATCCAGAATGAATGGTGTAA+AGG + chr8_3:57859252-57859271 Msa1297490:intron 35.0%
TCCAGAATGAATGGTGTAAA+GGG + chr8_3:57859253-57859272 Msa1297490:intron 35.0%
!!! CAGGTGTTTTTTGTGTCTTA+TGG - chr8_3:57859317-57859336 None:intergenic 35.0%
! AGTATGTTGTGTTCAAGTTC+AGG - chr8_3:57859336-57859355 None:intergenic 35.0%
ACACAACATACTGTCTATAG+AGG + chr8_3:57859344-57859363 Msa1297490:intron 35.0%
ATAGGTCCTAAAACAAACCA+TGG + chr8_3:57859388-57859407 Msa1297490:intron 35.0%
!!! CTTCATCCATGGTTTGTTTT+AGG - chr8_3:57859397-57859416 None:intergenic 35.0%
ACACTAACTCCTTATTGCAA+GGG + chr8_3:57859442-57859461 Msa1297490:intron 35.0%
! CCAACAAATGAACACTTTTC+CGG - chr8_3:57859597-57859616 None:intergenic 35.0%
CTTAGTAAGAGTCAACTTGA+GGG + chr8_3:57859627-57859646 Msa1297490:intron 35.0%
TTAGTAAGAGTCAACTTGAG+GGG + chr8_3:57859628-57859647 Msa1297490:intron 35.0%
!! CAGGTATATTGGCTTCAATT+TGG + chr8_3:57859815-57859834 Msa1297490:intron 35.0%
!! TTTGGACGTTATTTTGCAAG+AGG + chr8_3:57859833-57859852 Msa1297490:CDS 35.0%
TATATAACAGAACCTACCAC+TGG - chr8_3:57859860-57859879 None:intergenic 35.0%
! ATTCTCTGTGGTCTTTTTGT+TGG + chr8_3:57860294-57860313 Msa1297490:three_prime_UTR 35.0%
! TAGAAGATTTGGCATGCTTT+TGG + chr8_3:57860345-57860364 Msa1297490:three_prime_UTR 35.0%
! TCTGTCATTGATGTACCTTT+TGG + chr8_3:57860402-57860421 Msa1297490:three_prime_UTR 35.0%
ACTTAGCTAAAGTCCTTGTG+AGG + chr8_3:57854229-57854248 Msa1297490:five_prime_UTR 40.0%
AAAGAAGTTAGAGTCCTTGG+AGG + chr8_3:57854256-57854275 Msa1297490:five_prime_UTR 40.0%
ACTACTGGGAATTCGAAGAA+GGG - chr8_3:57854417-57854436 None:intergenic 40.0%
TACTACTGGGAATTCGAAGA+AGG - chr8_3:57854418-57854437 None:intergenic 40.0%
TAACGGAAGCAAACGATTAC+CGG + chr8_3:57854546-57854565 Msa1297490:CDS 40.0%
TGAACTGTGACCTTATGAGT+TGG - chr8_3:57854590-57854609 None:intergenic 40.0%
! GAGTACTGTTTGTGAAATGC+AGG + chr8_3:57854738-57854757 Msa1297490:intron 40.0%
TACCTAACACGATCATGACA+CGG + chr8_3:57854918-57854937 Msa1297490:intron 40.0%
TTGGTCTAGACACCAATAGA+TGG + chr8_3:57855011-57855030 Msa1297490:intron 40.0%
! ACACCAATAGATGGAAGTGT+CGG + chr8_3:57855020-57855039 Msa1297490:intron 40.0%
! ATTCTCACCGGTGTCAATTT+AGG + chr8_3:57855202-57855221 Msa1297490:intron 40.0%
! AATCTAGAGAAGGAGAGTAC+AGG + chr8_3:57855314-57855333 Msa1297490:intron 40.0%
AAGACCAAGGAAATAACGCA+TGG - chr8_3:57855372-57855391 None:intergenic 40.0%
AGAGCTTAAAGGGGCAATAT+GGG - chr8_3:57855426-57855445 None:intergenic 40.0%
AAGAGCTTAAAGGGGCAATA+TGG - chr8_3:57855427-57855446 None:intergenic 40.0%
AATCTAGAGGGAAACAGAAG+CGG - chr8_3:57855962-57855981 None:intergenic 40.0%
AGCAACCAAATAAGGAAACC+AGG - chr8_3:57856012-57856031 None:intergenic 40.0%
TGCGCTGTTCGTATAAAGAA+TGG + chr8_3:57856068-57856087 Msa1297490:CDS 40.0%
GCGCTGTTCGTATAAAGAAT+GGG + chr8_3:57856069-57856088 Msa1297490:CDS 40.0%
TGGGAAAATTAAACAGCCAG+AGG + chr8_3:57856088-57856107 Msa1297490:CDS 40.0%
GCATCATTGAAGATGGTTGA+TGG - chr8_3:57856253-57856272 None:intergenic 40.0%
! CCAACATCTATTGGTCTAAG+CGG - chr8_3:57857523-57857542 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG - chr8_3:57857792-57857811 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG + chr8_3:57857670-57857689 Msa1297490:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG + chr8_3:57857718-57857737 Msa1297490:intron 40.0%
TGTAACTGCTAGTAACCACT+AGG - chr8_3:57857736-57857755 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG - chr8_3:57857670-57857689 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG + chr8_3:57857792-57857811 Msa1297490:intron 40.0%
GAGGAATTATCATCCAACAG+TGG - chr8_3:57857808-57857827 None:intergenic 40.0%
! CAACAGTGGTTAGTTGCAAA+GGG + chr8_3:57857936-57857955 Msa1297490:intron 40.0%
GTTAGTTGCAAAGGGAGAAA+AGG + chr8_3:57857944-57857963 Msa1297490:intron 40.0%
TGTAACAGCTAGTAACCACT+AGG + chr8_3:57857994-57858013 Msa1297490:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG - chr8_3:57857718-57857737 None:intergenic 40.0%
TGGGTCATTTCTCAATAGGT+TGG - chr8_3:57858045-57858064 None:intergenic 40.0%
GGATTGGGTCATTTCTCAAT+AGG - chr8_3:57858049-57858068 None:intergenic 40.0%
! ATAGAAGGAGTTTAGGACAG+AGG - chr8_3:57858076-57858095 None:intergenic 40.0%
ACAGCAGTTATGAAATGGGA+CGG - chr8_3:57858133-57858152 None:intergenic 40.0%
CTGGAACAGCAGTTATGAAA+TGG - chr8_3:57858138-57858157 None:intergenic 40.0%
CATTTCATAACTGCTGTTCC+AGG + chr8_3:57858136-57858155 Msa1297490:intron 40.0%
CCATCGTGAGAAATTATGCT+AGG - chr8_3:57858186-57858205 None:intergenic 40.0%
CCTAGCATAATTTCTCACGA+TGG + chr8_3:57858183-57858202 Msa1297490:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_3:57858297-57858316 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_3:57858298-57858317 None:intergenic 40.0%
GTAATGTTAGCATGGCATTG+AGG + chr8_3:57858691-57858710 Msa1297490:intron 40.0%
! AATGTTAGCATGGCATTGAG+GGG + chr8_3:57858693-57858712 Msa1297490:intron 40.0%
TGGTGATTTGATGTTAGCTG+TGG + chr8_3:57858806-57858825 Msa1297490:intron 40.0%
! GGAGAGTTCACTAAAGCATT+AGG - chr8_3:57858891-57858910 None:intergenic 40.0%
TAACTCGTCAAGTATAGACC+CGG - chr8_3:57859166-57859185 None:intergenic 40.0%
CTCCTACTATCCAGAATGAA+TGG + chr8_3:57859244-57859263 Msa1297490:intron 40.0%
CACCATTCATTCTGGATAGT+AGG - chr8_3:57859249-57859268 None:intergenic 40.0%
TCCCTTTACACCATTCATTC+TGG - chr8_3:57859257-57859276 None:intergenic 40.0%
AATGAATGGTGTAAAGGGAG+AGG + chr8_3:57859258-57859277 Msa1297490:intron 40.0%
ATGAATGGTGTAAAGGGAGA+GGG + chr8_3:57859259-57859278 Msa1297490:intron 40.0%
TGTGTCTTATGGTACAGAAG+CGG - chr8_3:57859306-57859325 None:intergenic 40.0%
!! GAGGTCTTTGAGATTCCTTT+CGG + chr8_3:57859363-57859382 Msa1297490:intron 40.0%
!! AGGTCTTTGAGATTCCTTTC+GGG + chr8_3:57859364-57859383 Msa1297490:intron 40.0%
TTGAGATTCCTTTCGGGAAT+AGG + chr8_3:57859370-57859389 Msa1297490:intron 40.0%
!!! TTTTAGGACCTATTCCCGAA+AGG - chr8_3:57859381-57859400 None:intergenic 40.0%
ATGTTGGGTAACTTCATCCA+TGG - chr8_3:57859408-57859427 None:intergenic 40.0%
GACACTAACTCCTTATTGCA+AGG + chr8_3:57859441-57859460 Msa1297490:intron 40.0%
CACTGATATCCCTTGCAATA+AGG - chr8_3:57859454-57859473 None:intergenic 40.0%
!! CCGGAAAAGTGTTCATTTGT+TGG + chr8_3:57859594-57859613 Msa1297490:intron 40.0%
GCTTAGTAAGAGTCAACTTG+AGG + chr8_3:57859626-57859645 Msa1297490:intron 40.0%
CCAATATACCTGTGAGTCAA+GGG - chr8_3:57859807-57859826 None:intergenic 40.0%
!! TTATTTTGCAAGAGGACCAG+TGG + chr8_3:57859841-57859860 Msa1297490:CDS 40.0%
TATGAGTATCTGACACGTGT+TGG + chr8_3:57860081-57860100 Msa1297490:three_prime_UTR 40.0%
TCGTGTTCAGTGTTTGTGTT+TGG + chr8_3:57860196-57860215 Msa1297490:three_prime_UTR 40.0%
!! TCAGCATTGACTCAACCAAA+AGG - chr8_3:57860420-57860439 None:intergenic 40.0%
CTTATCCATTACTGTGCGTT+TGG - chr8_3:57860444-57860463 None:intergenic 40.0%
!! CAAACGCACAGTAATGGATA+AGG + chr8_3:57860442-57860461 Msa1297490:three_prime_UTR 40.0%
GTATCGTCAAAACTCCTCCA+AGG - chr8_3:57854273-57854292 None:intergenic 45.0%
GATACGTGTCAAGCAGCAAT+TGG + chr8_3:57854288-57854307 Msa1297490:five_prime_UTR 45.0%
CTGACACGCACATAACTTAC+GGG - chr8_3:57854352-57854371 None:intergenic 45.0%
GCTGACACGCACATAACTTA+CGG - chr8_3:57854353-57854372 None:intergenic 45.0%
CTACTGGGAATTCGAAGAAG+GGG - chr8_3:57854416-57854435 None:intergenic 45.0%
! TTTGCTTCCGTTAGTCTCAC+CGG - chr8_3:57854539-57854558 None:intergenic 45.0%
AACGATTACCGGTATCCTAG+TGG + chr8_3:57854557-57854576 Msa1297490:CDS 45.0%
! TGGTGATGCTCCAACTCATA+AGG + chr8_3:57854577-57854596 Msa1297490:CDS 45.0%
ACAGTTCACGATAGACAACG+AGG + chr8_3:57854602-57854621 Msa1297490:CDS 45.0%
TCACGAATTCCTTGTACCTG+AGG + chr8_3:57854631-57854650 Msa1297490:CDS 45.0%
AAAGTAAGTACCATGCCTGC+AGG - chr8_3:57854815-57854834 None:intergenic 45.0%
TCACAGCTAATGAACCCACT+TGG + chr8_3:57855117-57855136 Msa1297490:intron 45.0%
CACAGCTAATGAACCCACTT+GGG + chr8_3:57855118-57855137 Msa1297490:intron 45.0%
! TCACCGGTGTCAATTTAGGT+GGG + chr8_3:57855206-57855225 Msa1297490:intron 45.0%
! TGGCTTATGGGCTAAATTGG+AGG + chr8_3:57855600-57855619 Msa1297490:intron 45.0%
! GGCTTATGGGCTAAATTGGA+GGG + chr8_3:57855601-57855620 Msa1297490:intron 45.0%
TTAACATACCCGTAGGAGAG+AGG + chr8_3:57855679-57855698 Msa1297490:intron 45.0%
TGATTGTCGACGTTCCCAAT+AGG - chr8_3:57855888-57855907 None:intergenic 45.0%
!! ATTAAACAGCCAGAGGCACT+TGG + chr8_3:57856095-57856114 Msa1297490:CDS 45.0%
!! TTAAACAGCCAGAGGCACTT+GGG + chr8_3:57856096-57856115 Msa1297490:CDS 45.0%
ACGTACCTGCTCTCTCAATT+CGG - chr8_3:57856129-57856148 None:intergenic 45.0%
AGTAGCAATGCATGATGCTC+TGG + chr8_3:57856200-57856219 Msa1297490:intron 45.0%
CAGGATAATCCAAGTCAAGC+CGG + chr8_3:57857394-57857413 Msa1297490:intron 45.0%
ATAATCCAAGTCAAGCCGGA+TGG + chr8_3:57857398-57857417 Msa1297490:intron 45.0%
CCGCTTAGACCAATAGATGT+TGG + chr8_3:57857520-57857539 Msa1297490:intron 45.0%
GGGGAATTATCATCCAACAG+TGG + chr8_3:57857657-57857676 Msa1297490:intron 45.0%
GAGCTTATTGAACAAACGCG+AGG - chr8_3:57857827-57857846 None:intergenic 45.0%
GGGGAATTATCATCCAACAG+TGG + chr8_3:57857657-57857676 Msa1297490:intron 45.0%
CCTTTGCAACTAACCACTGT+TGG - chr8_3:57857938-57857957 None:intergenic 45.0%
! CCAACAGTGGTTAGTTGCAA+AGG + chr8_3:57857935-57857954 Msa1297490:intron 45.0%
GCATAATTTCTCACGATGGG+AGG + chr8_3:57858187-57858206 Msa1297490:intron 45.0%
! TGATTGTCACAGTTGGTGCA+CGG - chr8_3:57858521-57858540 None:intergenic 45.0%
ATGAAGCGTACAACAACAGC+AGG - chr8_3:57858572-57858591 None:intergenic 45.0%
! ATGTTAGCATGGCATTGAGG+GGG + chr8_3:57858694-57858713 Msa1297490:intron 45.0%
!!! GCGGCTTAGTCTTTTTTCCT+TGG - chr8_3:57859287-57859306 None:intergenic 45.0%
GATGATGAGAAGATGCTCAG+AGG - chr8_3:57859515-57859534 None:intergenic 45.0%
TAAGAGTCAACTTGAGGGGA+TGG + chr8_3:57859632-57859651 Msa1297490:intron 45.0%
! ATTTGCTACCCTTGACTCAC+AGG + chr8_3:57859796-57859815 Msa1297490:intron 45.0%
CCCTTGACTCACAGGTATAT+TGG + chr8_3:57859804-57859823 Msa1297490:intron 45.0%
GCCAATATACCTGTGAGTCA+AGG - chr8_3:57859808-57859827 None:intergenic 45.0%
GGAAAGAGATGATTACGCCT+TGG + chr8_3:57859959-57859978 Msa1297490:intron 45.0%
AGATGATTACGCCTTGGAGT+TGG + chr8_3:57859965-57859984 Msa1297490:CDS 45.0%
! GGTGCTACAGAGAAAAGGAA+AGG - chr8_3:57860039-57860058 None:intergenic 45.0%
!! CTATCGGTGCTACAGAGAAA+AGG - chr8_3:57860044-57860063 None:intergenic 45.0%
CTGAACCAAACGCACAGTAA+TGG + chr8_3:57860436-57860455 Msa1297490:three_prime_UTR 45.0%
!!! GACTTGCGGAGGGTTTTAGA+AGG - chr8_3:57854485-57854504 None:intergenic 50.0%
TAAAACCCTCCGCAAGTCGA+CGG + chr8_3:57854487-57854506 Msa1297490:CDS 50.0%
TCAAACGCCGGTGAGACTAA+CGG + chr8_3:57854529-57854548 Msa1297490:CDS 50.0%
GAGCATCACCACTAGGATAC+CGG - chr8_3:57854568-57854587 None:intergenic 50.0%
! TGAGTTGGAGCATCACCACT+AGG - chr8_3:57854575-57854594 None:intergenic 50.0%
GTCCGTGTCATGATCGTGTT+AGG - chr8_3:57854923-57854942 None:intergenic 50.0%
ACGATCATGACACGGACACA+TGG + chr8_3:57854926-57854945 Msa1297490:intron 50.0%
! GCACCGACACTTCCATCTAT+TGG - chr8_3:57855026-57855045 None:intergenic 50.0%
GCTAATGAACCCACTTGGGT+TGG + chr8_3:57855122-57855141 Msa1297490:intron 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_3:57855136-57855155 Msa1297490:intron 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_3:57855141-57855160 Msa1297490:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_3:57855142-57855161 Msa1297490:intron 50.0%
GTCTCAGGTTCGATTCTCAC+CGG + chr8_3:57855190-57855209 Msa1297490:intron 50.0%
! CTCACCGGTGTCAATTTAGG+TGG + chr8_3:57855205-57855224 Msa1297490:intron 50.0%
TGGCCCACCTAAATTGACAC+CGG - chr8_3:57855212-57855231 None:intergenic 50.0%
TGTCGACGTTCCCAATAGGA+GGG - chr8_3:57855884-57855903 None:intergenic 50.0%
TTGTCGACGTTCCCAATAGG+AGG - chr8_3:57855885-57855904 None:intergenic 50.0%
ATCTGCCGAATTGAGAGAGC+AGG + chr8_3:57856121-57856140 Msa1297490:CDS 50.0%
AGCAATGCATGATGCTCTGG+AGG + chr8_3:57856203-57856222 Msa1297490:intron 50.0%
TAGAGTAGAGGAGGACGAAG+TGG + chr8_3:57856375-57856394 Msa1297490:intron 50.0%
TAGGACAGAGGCAGAGGATT+GGG - chr8_3:57858064-57858083 None:intergenic 50.0%
TTAGGACAGAGGCAGAGGAT+TGG - chr8_3:57858065-57858084 None:intergenic 50.0%
GTACAACAACAGCAGGTGGA+AGG - chr8_3:57858565-57858584 None:intergenic 50.0%
AAGCGTACAACAACAGCAGG+TGG - chr8_3:57858569-57858588 None:intergenic 50.0%
ATCCACAACCCTCAAGCATG+AGG - chr8_3:57859129-57859148 None:intergenic 50.0%
TCGGCTCATATCCTCGTACT+CGG + chr8_3:57859215-57859234 Msa1297490:intron 50.0%
TGTAAAGGGAGAGGGAACCA+AGG + chr8_3:57859267-57859286 Msa1297490:intron 50.0%
TTTGCAAGAGGACCAGTGGT+AGG + chr8_3:57859845-57859864 Msa1297490:intron 50.0%
TTACCCTTCCATTCGCCTGC+AGG + chr8_3:57854797-57854816 Msa1297490:CDS 55.0%
ATGCCTGCAGGCGAATGGAA+GGG - chr8_3:57854803-57854822 None:intergenic 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_3:57855134-57855153 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_3:57855135-57855154 None:intergenic 55.0%
GGTCCCAAGCCAATACCACT+AGG - chr8_3:57855148-57855167 None:intergenic 55.0%
!! AGTGGTATTGGCTTGGGACC+TGG + chr8_3:57855148-57855167 Msa1297490:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr8_3:57855149-57855168 Msa1297490:intron 55.0%
GAATCGAACCTGAGACCTCG+AGG - chr8_3:57855186-57855205 None:intergenic 55.0%
GCAGATATCCCAAGTGCCTC+TGG - chr8_3:57856107-57856126 None:intergenic 55.0%
AGTAGAGGAGGACGAAGTGG+TGG + chr8_3:57856378-57856397 Msa1297490:intron 55.0%
GGACGAAGTGGTGGTTGTAG+TGG + chr8_3:57856387-57856406 Msa1297490:intron 55.0%
! TGTGTCCATCCGGCTTGACT+TGG - chr8_3:57857406-57857425 None:intergenic 55.0%
! GGAGTTTAGGACAGAGGCAG+AGG - chr8_3:57858070-57858089 None:intergenic 55.0%
TCCAGGCCCTCTTGGACTAA+TGG + chr8_3:57858153-57858172 Msa1297490:intron 55.0%
ACCATTAGTCCAAGAGGGCC+TGG - chr8_3:57858157-57858176 None:intergenic 55.0%
ACGTGCAAGCCTCATGCTTG+AGG + chr8_3:57859117-57859136 Msa1297490:intron 55.0%
CGTGCAAGCCTCATGCTTGA+GGG + chr8_3:57859118-57859137 Msa1297490:intron 55.0%
AGCCTCATGCTTGAGGGTTG+TGG + chr8_3:57859124-57859143 Msa1297490:intron 55.0%
AGGAGAATGAGCCGAGTACG+AGG - chr8_3:57859229-57859248 None:intergenic 55.0%
TTACGCCTTGGAGTTGGCCA+TGG + chr8_3:57859971-57859990 Msa1297490:CDS 55.0%
TACGCCTTGGAGTTGGCCAT+GGG + chr8_3:57859972-57859991 Msa1297490:CDS 55.0%
AGCGACGGAGCTTCAAACGC+CGG + chr8_3:57854517-57854536 Msa1297490:CDS 60.0%
CATGCCTGCAGGCGAATGGA+AGG - chr8_3:57854804-57854823 None:intergenic 60.0%
CTTCCATTCGCCTGCAGGCA+TGG + chr8_3:57854802-57854821 Msa1297490:CDS 60.0%
GTACCATGCCTGCAGGCGAA+TGG - chr8_3:57854808-57854827 None:intergenic 60.0%
TGACACGGACACATGGACGC+AGG + chr8_3:57854933-57854952 Msa1297490:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_3:57855130-57855149 Msa1297490:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG - chr8_3:57855183-57855202 None:intergenic 60.0%
ACTGCTGTTCCAGGCCCTCT+TGG + chr8_3:57858145-57858164 Msa1297490:intron 60.0%
GTCACCCATGGCCAACTCCA+AGG - chr8_3:57859979-57859998 None:intergenic 60.0%
GCCATGGGTGACGAGTAAGC+AGG + chr8_3:57859987-57860006 Msa1297490:exon 60.0%
GCCTGCTTACTCGTCACCCA+TGG - chr8_3:57859991-57860010 None:intergenic 60.0%
AACCCTCCGCAAGTCGACGG+TGG + chr8_3:57854490-57854509 Msa1297490:CDS 65.0%
!! TGCCACCGTCGACTTGCGGA+GGG - chr8_3:57854495-57854514 None:intergenic 65.0%
!! CTGCTGCCACCGTCGACTTG+CGG - chr8_3:57854499-57854518 None:intergenic 65.0%
! TCGAGGAGGAGCACACTCCC+AGG - chr8_3:57855169-57855188 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG + chr8_3:57855168-57855187 Msa1297490:intron 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG + chr8_3:57855175-57855194 Msa1297490:intron 65.0%
!! CTGCCACCGTCGACTTGCGG+AGG - chr8_3:57854496-57854515 None:intergenic 70.0%
GTCGACGGTGGCAGCAGCGA+CGG + chr8_3:57854502-57854521 Msa1297490:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57854180 57860471 57854180 ID=Msa1297490;Name=Msa1297490
chr8_3 mRNA 57854180 57860471 57854180 ID=Msa1297490-mRNA-1;Parent=Msa1297490;Name=Msa1297490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=224|1|1|1|1|1|6|467|186
chr8_3 exon 57854180 57854652 57854180 ID=Msa1297490-mRNA-1:exon:16550;Parent=Msa1297490-mRNA-1
chr8_3 exon 57854760 57854823 57854760 ID=Msa1297490-mRNA-1:exon:16551;Parent=Msa1297490-mRNA-1
chr8_3 exon 57856054 57856142 57856054 ID=Msa1297490-mRNA-1:exon:16552;Parent=Msa1297490-mRNA-1
chr8_3 exon 57856994 57857062 57856994 ID=Msa1297490-mRNA-1:exon:16553;Parent=Msa1297490-mRNA-1
chr8_3 exon 57859818 57859862 57859818 ID=Msa1297490-mRNA-1:exon:16554;Parent=Msa1297490-mRNA-1
chr8_3 exon 57859960 57860471 57859960 ID=Msa1297490-mRNA-1:exon:16555;Parent=Msa1297490-mRNA-1
chr8_3 five_prime_UTR 57854180 57854403 57854180 ID=Msa1297490-mRNA-1:five_prime_utr;Parent=Msa1297490-mRNA-1
chr8_3 CDS 57854404 57854652 57854404 ID=Msa1297490-mRNA-1:cds;Parent=Msa1297490-mRNA-1
chr8_3 CDS 57854760 57854823 57854760 ID=Msa1297490-mRNA-1:cds;Parent=Msa1297490-mRNA-1
chr8_3 CDS 57856054 57856142 57856054 ID=Msa1297490-mRNA-1:cds;Parent=Msa1297490-mRNA-1
chr8_3 CDS 57856994 57857062 57856994 ID=Msa1297490-mRNA-1:cds;Parent=Msa1297490-mRNA-1
chr8_3 CDS 57859818 57859862 57859818 ID=Msa1297490-mRNA-1:cds;Parent=Msa1297490-mRNA-1
chr8_3 CDS 57859960 57860004 57859960 ID=Msa1297490-mRNA-1:cds;Parent=Msa1297490-mRNA-1
chr8_3 three_prime_UTR 57860005 57860471 57860005 ID=Msa1297490-mRNA-1:three_prime_utr;Parent=Msa1297490-mRNA-1
Gene Sequence

>Msa1297490

ATGGCGCTACCCCTTCTTCGAATTCCCAGTAGTAGTTGTTGTTCGATTCCATTTATTAATACAAAGCCGCAATCTCTTCCTTCTAAAACCCTCCGCAAGTCGACGGTGGCAGCAGCGACGGAGCTTCAAACGCCGGTGAGACTAACGGAAGCAAACGATTACCGGTATCCTAGTGGTGATGCTCCAACTCATAAGGTCACAGTTCACGATAGACAACGAGGAGTTGTTCACGAATTCCTTGTACCTGAGGACCAATATATATTGCATACTGCTGAGTCTCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGTTGCGCTGTTCGTATAAAGAATGGGAAAATTAAACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGAGCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTTGGACGTTATTTTGCAAGAGGACCAGTGGAAAGAGATGATTACGCCTTGGAGTTGGCCATGGGTGACGAGTAA

Protein sequence

>Msa1297490

MALPLLRIPSSSCCSIPFINTKPQSLPSKTLRKSTVAAATELQTPVRLTEANDYRYPSGDAPTHKVTVHDRQRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKNGKIKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMGDE*