AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623350 MtrunA17_Chr4g0075101 99.017 407 4 0 1 407 1 407 0.0 832
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623350 AT1G11860.2 88.480 408 46 1 1 407 1 408 0.0 756
Msa0623350 AT1G11860.1 88.480 408 46 1 1 407 1 408 0.0 756
Msa0623350 AT1G11860.3 88.480 408 46 1 1 407 16 423 0.0 756

Find 132 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTCTGTCTACAGTTTA+AGG 0.095824 4_3:+545875 None:intergenic
CGTGTCGGTTTCATTTCTTC+TGG 0.292466 4_3:-543566 Msa0623350:CDS
ATTAAATAATTTAAATAAAG+AGG 0.307954 4_3:+546916 None:intergenic
GGATTGGGTATCACTCGATT+TGG 0.329004 4_3:-547004 Msa0623350:five_prime_UTR
CACAGAGATTGAATTTGAAT+TGG 0.329727 4_3:+546699 None:intergenic
GCTGCACTTGCACCTGGAAC+TGG 0.341915 4_3:-545762 Msa0623350:CDS
ACAGTCAATGTTCCAGTTCC+AGG 0.349953 4_3:+545750 None:intergenic
AACAGCCTTCTTATCTCCTT+TGG 0.351564 4_3:+546037 None:intergenic
CCTGGAGATAATGTGAATAT+CGG 0.352570 4_3:+542959 None:intergenic
TGTGTTGAAACAAGAGAGTT+AGG 0.356115 4_3:-542995 Msa0623350:three_prime_UTR
TTTGTCAGATGTTGAAGAAC+TGG 0.361087 4_3:+544782 None:intergenic
ATTTGAGCAAGCTATACTTT+GGG 0.366140 4_3:-544754 Msa0623350:CDS
CCACGACACATCGCCACCTT+TGG 0.366261 4_3:+545587 None:intergenic
CAGTGCTTTCTCACACGAAC+AGG 0.368706 4_3:-544701 Msa0623350:CDS
GGTAAGATGGTTCCATTTGC+TGG 0.374594 4_3:-545942 Msa0623350:CDS
CACGGATCATCACATTTACT+TGG 0.383116 4_3:-545676 Msa0623350:CDS
AATGAAACCGACACGCCTTA+TGG 0.386619 4_3:+543574 None:intergenic
ATTGAGTCCTTGTATTGAAT+AGG 0.387519 4_3:+545909 None:intergenic
GATTTGAGCAAGCTATACTT+TGG 0.389150 4_3:-544755 Msa0623350:CDS
GCTATGGGATATGTCAAATC+TGG 0.392835 4_3:-543443 Msa0623350:CDS
CATGTCAGTCCTGCCTCAAT+TGG 0.393243 4_3:+543677 None:intergenic
GATTGGGTATCACTCGATTT+GGG 0.396653 4_3:-547003 Msa0623350:five_prime_UTR
TCGAATAATGATCTTAACTT+TGG 0.398115 4_3:+543403 None:intergenic
TGAGGCTTAAACCACACATA+TGG 0.412409 4_3:+545835 None:intergenic
CGAGACGGCGAGTGATTGAT+TGG 0.422491 4_3:+546060 None:intergenic
GCAGGACTGACATGGGCTAT+AGG 0.434359 4_3:-543668 Msa0623350:CDS
GATGTTGCTGCACTTGCACC+TGG 0.440477 4_3:-545768 Msa0623350:CDS
GTTCCATGTCATTGCCATAC+AGG 0.440802 4_3:+543711 None:intergenic
GAATTTGAATTGGTTGTGTT+CGG 0.450256 4_3:+546709 None:intergenic
TTCAGGTACACTGGAGAAGA+TGG 0.451717 4_3:-543863 Msa0623350:intron
TTAAATAATTTAAATAAAGA+GGG 0.454758 4_3:+546917 None:intergenic
TAAAGATTTGGCTCATATTG+AGG 0.461019 4_3:-545631 Msa0623350:CDS
GATAGTCTACGCCTTGAAGC+TGG 0.463158 4_3:-543740 Msa0623350:CDS
GTTACCACTCACTAAGGATT+GGG 0.464842 4_3:-547019 Msa0623350:five_prime_UTR
CGGGTGCAGAGATAAAGATT+TGG 0.471255 4_3:-545643 Msa0623350:CDS
GGCATGCTCCATCCAGCAAA+TGG 0.472308 4_3:+545930 None:intergenic
ATTTACTTGGTTGTGAATGC+CGG 0.472947 4_3:-545663 Msa0623350:CDS
TATGACTTCCATGTTGCTCA+TGG 0.477864 4_3:-545966 Msa0623350:CDS
TCAAGTACAAGGCTTCATCT+TGG 0.483764 4_3:-543223 Msa0623350:three_prime_UTR
TGTTACCACTCACTAAGGAT+TGG 0.484601 4_3:-547020 Msa0623350:five_prime_UTR
GAAGCTGGATTGTGCCTGTA+TGG 0.487628 4_3:-543725 Msa0623350:CDS
AAAGTAAGATTGACAGGACT+TGG 0.489168 4_3:-543770 Msa0623350:CDS
CGATGATTCCGTCATTACTA+AGG 0.491345 4_3:-545700 Msa0623350:CDS
GGAGCATATGAAGGCATTCA+AGG 0.494274 4_3:-545610 Msa0623350:CDS
GAAGGGAAAGTAAGATTGAC+AGG 0.496499 4_3:-543776 Msa0623350:CDS
ACAGGCACAATCCAGCTTCA+AGG 0.498434 4_3:+543729 None:intergenic
CTGGAGATAATGTGAATATC+GGG 0.498898 4_3:+542960 None:intergenic
CACAGTGAGATTCAAGATGA+AGG 0.499277 4_3:-543527 Msa0623350:CDS
TCGCAGATGGTCCTTCCATA+AGG 0.504848 4_3:-543589 Msa0623350:CDS
AATTTAAATAAAGAGGGAGT+TGG 0.508542 4_3:+546923 None:intergenic
GAGAACTCTACTTGCTCTAC+AGG 0.511392 4_3:-545550 Msa0623350:intron
TCTCAAGAAGAACATAGCTA+TGG 0.511968 4_3:-543459 Msa0623350:CDS
TTGTCAGATGTTGAAGAACT+GGG 0.514475 4_3:+544783 None:intergenic
TCAATACAAGGACTCAATCA+TGG 0.514848 4_3:-545904 Msa0623350:CDS
TGTTTCTCACATCAAGTACA+AGG 0.516004 4_3:-543234 Msa0623350:three_prime_UTR
AAAGTTAAGATCATTATTCG+AGG 0.516211 4_3:-543401 Msa0623350:CDS
TTGAAGAACTGGGGCAGCAA+GGG 0.519281 4_3:+544793 None:intergenic
CTTTGGGGAGTTCCGTGTGT+TGG 0.519486 4_3:-544738 Msa0623350:CDS
AGATGGTTCCATTTGCTGGA+TGG 0.520570 4_3:-545938 Msa0623350:CDS
TCAAATCAGCACAGTGGAGG+AGG 0.521331 4_3:+546735 None:intergenic
GATGTTGTTACCACTCACTA+AGG 0.521611 4_3:-547025 Msa0623350:five_prime_UTR
GAGGCTTAAACCACACATAT+GGG 0.524691 4_3:+545836 None:intergenic
TTAAATAAAGAGGGAGTTGG+TGG 0.525956 4_3:+546926 None:intergenic
GGTAAGAGGAGAAGAGCAGA+AGG 0.526634 4_3:-543647 Msa0623350:CDS
TTCCGTGTGTTGGACATCAA+TGG 0.531417 4_3:-544728 Msa0623350:CDS
AAATCTGGATTGCACAAAGC+AGG 0.532141 4_3:-543428 Msa0623350:CDS
CAAATCTTTATCTCTGCACC+CGG 0.534279 4_3:+545644 None:intergenic
AGATCTACTGCATGCTCTGA+AGG 0.534907 4_3:+543824 None:intergenic
TGACATGGGCTATAGGTAAG+AGG 0.535235 4_3:-543661 Msa0623350:CDS
TATGTAATGTTACACTCTGT+AGG 0.541400 4_3:+543276 None:intergenic
AATGCTGAAGGGAATTATGT+AGG 0.550089 4_3:+543320 None:intergenic
ATCACTCGCCGTCTCGCCAA+AGG 0.550095 4_3:-546053 Msa0623350:CDS
TGTTGCTCATGGTGGTAAGA+TGG 0.550452 4_3:-545955 Msa0623350:CDS
ATCTCACTGTGACTTCTAGC+AGG 0.551600 4_3:+543539 None:intergenic
ATTCGAGGAAAAGCGAATGA+AGG 0.553509 4_3:-543386 Msa0623350:CDS
CAATTGAGGCAGGACTGACA+TGG 0.553672 4_3:-543676 Msa0623350:CDS
ACCTTAAACTGTAGACAGAA+TGG 0.555354 4_3:-545876 Msa0623350:CDS
ATCCGTGACCTTAGTAATGA+CGG 0.556090 4_3:+545692 None:intergenic
CACATTACACCAATTGAGGC+AGG 0.557962 4_3:-543686 Msa0623350:CDS
CTCAAGAAGAACATAGCTAT+GGG 0.560245 4_3:-543458 Msa0623350:CDS
CAGCAATGACTAACTTCTCA+AGG 0.560821 4_3:+545790 None:intergenic
TCTTATCTCCTTTGGCGAGA+CGG 0.561346 4_3:+546045 None:intergenic
AAGAGGAGAAGAGCAGAAGG+TGG 0.562050 4_3:-543644 Msa0623350:CDS
ATCTTGAAACAGCTCGCAGA+TGG 0.563167 4_3:-543602 Msa0623350:CDS
TTTACTTGGTTGTGAATGCC+GGG 0.565276 4_3:-545662 Msa0623350:CDS
TTTGAGCAAGCTATACTTTG+GGG 0.565692 4_3:-544753 Msa0623350:CDS
CCAAAGGTGGCGATGTGTCG+TGG 0.566131 4_3:-545587 Msa0623350:CDS
TTTCACTAACGAAAAGGGAG+GGG 0.570435 4_3:-545727 Msa0623350:CDS
TCATATTGAGGAGCATATGA+AGG 0.571587 4_3:-545619 Msa0623350:CDS
GGCTCAATTCAATTATACGT+TGG 0.572192 4_3:+546846 None:intergenic
ACAGCACATTACACCAATTG+AGG 0.576791 4_3:-543690 Msa0623350:CDS
GTTGAAGAACTGGGGCAGCA+AGG 0.578097 4_3:+544792 None:intergenic
TTCCGTCATTACTAAGGTCA+CGG 0.578576 4_3:-545694 Msa0623350:CDS
TCTCGCCAAAGGAGATAAGA+AGG 0.581288 4_3:-546042 Msa0623350:CDS
TGCTCGCAGATGTTTCGCTA+CGG 0.581316 4_3:-546015 Msa0623350:CDS
TATGTGTGGTTTAAGCCTCA+AGG 0.587234 4_3:-545832 Msa0623350:CDS
ATTGGTGAAGTCACCAGTGG+TGG 0.588887 4_3:-543494 Msa0623350:CDS
TTTGATGTTGCCCATATGTG+TGG 0.589064 4_3:-545846 Msa0623350:CDS
GAGCATGCCTATTCAATACA+AGG 0.590247 4_3:-545916 Msa0623350:CDS
GATGAAGGAGGCAACAACAT+TGG 0.591706 4_3:-543512 Msa0623350:CDS
ATGTGTGGTTTAAGCCTCAA+GGG 0.600077 4_3:-545831 Msa0623350:CDS
GTAGGAAAATTAGTCAACAA+AGG 0.606093 4_3:+543294 None:intergenic
CAACAAAGGAGAAATGCTGA+AGG 0.606389 4_3:+543308 None:intergenic
AATGGGACTTTCAGGTACAC+TGG 0.609040 4_3:-543872 Msa0623350:intron
TAAATAAAGAGGGAGTTGGT+GGG 0.611701 4_3:+546927 None:intergenic
AAACCGACACGCCTTATGGA+AGG 0.613652 4_3:+543578 None:intergenic
TGAAGAACTGGGGCAGCAAG+GGG 0.616239 4_3:+544794 None:intergenic
GCTATGTTCTTCTTGAGACA+AGG 0.620242 4_3:+543464 None:intergenic
ATGAAGGCATTCAAGGCCAA+AGG 0.623728 4_3:-545603 Msa0623350:CDS
GGTCCTTCCATAAGGCGTGT+CGG 0.628310 4_3:-543581 Msa0623350:CDS
AAATCAAATCAGCACAGTGG+AGG 0.633106 4_3:+546732 None:intergenic
TCTTACCACCATGAGCAACA+TGG 0.638546 4_3:+545958 None:intergenic
AAGGCATTCAAGGCCAAAGG+TGG 0.641633 4_3:-545600 Msa0623350:CDS
TTGCTTAAGAAAATGAGAGG+GGG 0.643458 4_3:-546098 Msa0623350:intron
ACAAGGACTGAATCCACCAC+TGG 0.645512 4_3:+543481 None:intergenic
GTGCCTGTATGGCAATGACA+TGG 0.646918 4_3:-543714 Msa0623350:CDS
TCACTGTGACTTCTAGCAGG+TGG 0.649253 4_3:+543542 None:intergenic
AACAAAGGAGAAATGCTGAA+GGG 0.655207 4_3:+543309 None:intergenic
TTTGCTTAAGAAAATGAGAG+GGG 0.657966 4_3:-546099 Msa0623350:intron
AATTGAGGCAGGACTGACAT+GGG 0.658168 4_3:-543675 Msa0623350:CDS
GATACCCAATCCTTAGTGAG+TGG 0.658296 4_3:+547015 None:intergenic
AGCCATTGATGTCCAACACA+CGG 0.669129 4_3:+544726 None:intergenic
GACTTCCATGTTGCTCATGG+TGG 0.670134 4_3:-545963 Msa0623350:CDS
GCATGCAGTAGATCTTGCCA+AGG 0.674997 4_3:-543816 Msa0623350:CDS
GCACATGTGATACATTGCAA+TGG 0.677827 4_3:+543070 None:intergenic
TGTCAGATGTTGAAGAACTG+GGG 0.678176 4_3:+544784 None:intergenic
ATATAAAATGAAACAAAGAG+AGG 0.683885 4_3:+546825 None:intergenic
AGTGCTTTCTCACACGAACA+GGG 0.685092 4_3:-544700 Msa0623350:intron
AGTGAGATTCAAGATGAAGG+AGG 0.687463 4_3:-543524 Msa0623350:CDS
AACATTGGTGAAGTCACCAG+TGG 0.698722 4_3:-543497 Msa0623350:CDS
AACAGAACAGAACAGAACAG+AGG 0.716840 4_3:-546766 Msa0623350:five_prime_UTR
CGGAAATCAAATCAGCACAG+TGG 0.739449 4_3:+546729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAAATGATTTTAATTAG+AGG - chr4_3:545470-545489 Msa0623350:intron 15.0%
!!! CACATTTTATAATTTAGATT+TGG + chr4_3:545713-545732 None:intergenic 15.0%
!!! TTGATAATTTTTGTTTTTAG+AGG + chr4_3:546953-546972 None:intergenic 15.0%
!! ATATAAAATGAAACAAAGAG+AGG + chr4_3:543170-543189 None:intergenic 20.0%
!! AAATATTGTAGATCATAAAG+AGG + chr4_3:543393-543412 None:intergenic 20.0%
!!! ACTAATATTACTTGCATTTT+AGG - chr4_3:543616-543635 Msa0623350:CDS 20.0%
!! TCTTAAAAATTGAAATGAAG+AGG + chr4_3:544612-544631 None:intergenic 20.0%
!!! TCTATTTTCAACATTAACAT+GGG + chr4_3:545095-545114 None:intergenic 20.0%
!!! ATCTATTTTCAACATTAACA+TGG + chr4_3:545096-545115 None:intergenic 20.0%
!! TTAATGTTGAAAATAGATTG+AGG - chr4_3:545098-545117 Msa0623350:intron 20.0%
!! TAATGTTGAAAATAGATTGA+GGG - chr4_3:545099-545118 Msa0623350:intron 20.0%
!! TTAGTGATTTAAATCAGATT+GGG + chr4_3:545510-545529 None:intergenic 20.0%
!! TTTAGTGATTTAAATCAGAT+TGG + chr4_3:545511-545530 None:intergenic 20.0%
!!! AAATCAAATGAACACATTTT+TGG + chr4_3:545555-545574 None:intergenic 20.0%
!!! AATGTGTTCATTTGATTTTT+TGG - chr4_3:545557-545576 Msa0623350:CDS 20.0%
!!! ATGTGTTCATTTGATTTTTT+GGG - chr4_3:545558-545577 Msa0623350:CDS 20.0%
!! TTAAAAAGTTCAGTTTGATT+TGG + chr4_3:545608-545627 None:intergenic 20.0%
!!! CATAGAATTTGTTTTAACTT+AGG - chr4_3:545631-545650 Msa0623350:CDS 20.0%
! AATTTAAATAAAGAGGGAGT+TGG + chr4_3:543072-543091 None:intergenic 25.0%
! ATCATAGCAGATAGTAAAAT+GGG + chr4_3:543334-543353 None:intergenic 25.0%
! TATCATAGCAGATAGTAAAA+TGG + chr4_3:543335-543354 None:intergenic 25.0%
! TTCGCATATCATATCATATT+TGG - chr4_3:543356-543375 Msa0623350:CDS 25.0%
! TTTAAGTAAGTAGATGTGAT+TGG + chr4_3:543590-543609 None:intergenic 25.0%
!! TTGAGTTTGAAATTTGAAGA+CGG + chr4_3:543719-543738 None:intergenic 25.0%
! AAATTGCGGCTAATTAAATT+CGG + chr4_3:543767-543786 None:intergenic 25.0%
!!! AATTGAAACAAGATAATGGA+TGG + chr4_3:543798-543817 None:intergenic 25.0%
! CCAAAATTGAAACAAGATAA+TGG + chr4_3:543802-543821 None:intergenic 25.0%
!!! CCATTATCTTGTTTCAATTT+TGG - chr4_3:543799-543818 Msa0623350:CDS 25.0%
!! ATTTTGCTTAAGAAAATGAG+AGG - chr4_3:543891-543910 Msa0623350:intron 25.0%
!! TTTTGCTTAAGAAAATGAGA+GGG - chr4_3:543892-543911 Msa0623350:intron 25.0%
!!! TTTTAAGATCTATAGCATAG+TGG - chr4_3:544624-544643 Msa0623350:intron 25.0%
! AAATGATTCCAATTTACTTC+AGG - chr4_3:545060-545079 Msa0623350:intron 25.0%
!! GAAGTTTTTCTTATTGTCTT+TGG - chr4_3:545166-545185 Msa0623350:intron 25.0%
! TAAGAATAAACTGCTAACTT+TGG + chr4_3:545356-545375 None:intergenic 25.0%
! CAAAAGAAAATTACAGTGAT+AGG + chr4_3:545448-545467 None:intergenic 25.0%
!!! TTACATTTTGAAGTCTGATT+TGG - chr4_3:545581-545600 Msa0623350:CDS 25.0%
! AACTGAATGATGCAATTTAA+AGG - chr4_3:545890-545909 Msa0623350:CDS 25.0%
! AGATATAGTTGGATATTTGT+TGG - chr4_3:545945-545964 Msa0623350:CDS 25.0%
!! TTGGATATTTGTTGGAAAAT+TGG - chr4_3:545953-545972 Msa0623350:CDS 25.0%
! CAATACTTGAAAAATCTGAA+GGG - chr4_3:546199-546218 Msa0623350:intron 25.0%
! TCGAATAATGATCTTAACTT+TGG + chr4_3:546592-546611 None:intergenic 25.0%
! AAAGTTAAGATCATTATTCG+AGG - chr4_3:546591-546610 Msa0623350:intron 25.0%
GAATTTGAATTGGTTGTGTT+CGG + chr4_3:543286-543305 None:intergenic 30.0%
CACAGAGATTGAATTTGAAT+TGG + chr4_3:543296-543315 None:intergenic 30.0%
AGCAATAAATGAATGATACG+AGG + chr4_3:543500-543519 None:intergenic 30.0%
TCAAATCTCATATTTCAGAG+TGG + chr4_3:543692-543711 None:intergenic 30.0%
! TGAGTTTGAAATTTGAAGAC+GGG + chr4_3:543718-543737 None:intergenic 30.0%
TTTGCTTAAGAAAATGAGAG+GGG - chr4_3:543893-543912 Msa0623350:intron 30.0%
ATTGAGTCCTTGTATTGAAT+AGG + chr4_3:544086-544105 None:intergenic 30.0%
! ACTGTTTTCACTAACGAAAA+GGG - chr4_3:544260-544279 Msa0623350:intron 30.0%
! TAAAGATTTGGCTCATATTG+AGG - chr4_3:544361-544380 Msa0623350:intron 30.0%
! AGTTGATTCAGTACAATCTA+AGG - chr4_3:544799-544818 Msa0623350:CDS 30.0%
ATTTGAGCAAGCTATACTTT+GGG - chr4_3:545238-545257 Msa0623350:intron 30.0%
TTGACACAACAAGGAATTTA+AGG + chr4_3:545407-545426 None:intergenic 30.0%
ATAGTCAAATTGACACAACA+AGG + chr4_3:545416-545435 None:intergenic 30.0%
!!! TTTTTGGTTTTCGATTTGTC+AGG + chr4_3:545539-545558 None:intergenic 30.0%
ATTGAAATGCACAGTATATC+AGG + chr4_3:545769-545788 None:intergenic 30.0%
TTATTTACGATCCAATCACT+AGG + chr4_3:545867-545886 None:intergenic 30.0%
TAGTGATTGGATCGTAAATA+AGG - chr4_3:545866-545885 Msa0623350:CDS 30.0%
! ACTATATCTAACAGAGGTAT+TGG + chr4_3:545934-545953 None:intergenic 30.0%
ATACCTCTGTTAGATATAGT+TGG - chr4_3:545934-545953 Msa0623350:CDS 30.0%
TATCCAACTATATCTAACAG+AGG + chr4_3:545940-545959 None:intergenic 30.0%
TGTTGGAAAATTGGTTACAA+TGG - chr4_3:545962-545981 Msa0623350:CDS 30.0%
! TGTTTGTGTTATTGAGTCAT+AGG - chr4_3:546042-546061 Msa0623350:CDS 30.0%
TACATAACAACACACTCTAA+TGG - chr4_3:546102-546121 Msa0623350:intron 30.0%
ACATAACAACACACTCTAAT+GGG - chr4_3:546103-546122 Msa0623350:intron 30.0%
!!! AGATTTTTCAAGTATTGCCT+TGG + chr4_3:546196-546215 None:intergenic 30.0%
GCAATACTTGAAAAATCTGA+AGG - chr4_3:546198-546217 Msa0623350:intron 30.0%
! TAGTATTTTGTGGGTACAAA+TGG + chr4_3:546648-546667 None:intergenic 30.0%
GTAGGAAAATTAGTCAACAA+AGG + chr4_3:546701-546720 None:intergenic 30.0%
TATGTAATGTTACACTCTGT+AGG + chr4_3:546719-546738 None:intergenic 30.0%
GTACGCATGATGAAAAATAT+GGG + chr4_3:546857-546876 None:intergenic 30.0%
TGTACGCATGATGAAAAATA+TGG + chr4_3:546858-546877 None:intergenic 30.0%
! TAAATAAAGAGGGAGTTGGT+GGG + chr4_3:543068-543087 None:intergenic 35.0%
TTAAATAAAGAGGGAGTTGG+TGG + chr4_3:543069-543088 None:intergenic 35.0%
GGCTCAATTCAATTATACGT+TGG + chr4_3:543149-543168 None:intergenic 35.0%
! AGTTTGAAATTTGAAGACGG+GGG + chr4_3:543716-543735 None:intergenic 35.0%
! GAGTTTGAAATTTGAAGACG+GGG + chr4_3:543717-543736 None:intergenic 35.0%
TTTGGCATACTTTGTGTTGT+TGG - chr4_3:543817-543836 Msa0623350:CDS 35.0%
TTGCTTAAGAAAATGAGAGG+GGG - chr4_3:543894-543913 Msa0623350:intron 35.0%
TCAATACAAGGACTCAATCA+TGG - chr4_3:544088-544107 Msa0623350:intron 35.0%
ACCTTAAACTGTAGACAGAA+TGG - chr4_3:544116-544135 Msa0623350:intron 35.0%
ACCATTCTGTCTACAGTTTA+AGG + chr4_3:544120-544139 None:intergenic 35.0%
! GACTGTTTTCACTAACGAAA+AGG - chr4_3:544259-544278 Msa0623350:intron 35.0%
! TTTTCACTAACGAAAAGGGA+GGG - chr4_3:544264-544283 Msa0623350:intron 35.0%
ATTTACTTGGTTGTGAATGC+CGG - chr4_3:544329-544348 Msa0623350:intron 35.0%
! TCATATTGAGGAGCATATGA+AGG - chr4_3:544373-544392 Msa0623350:intron 35.0%
! GAAATGAAGAGGTGCAAATA+GGG + chr4_3:544601-544620 None:intergenic 35.0%
! TGAAATGAAGAGGTGCAAAT+AGG + chr4_3:544602-544621 None:intergenic 35.0%
GTACGAAGTGTGTTATCAAA+TGG - chr4_3:544932-544951 Msa0623350:intron 35.0%
! GATACATACTTTGTTTCGTC+TGG - chr4_3:545032-545051 Msa0623350:intron 35.0%
TGATTCCAATTTACTTCAGG+TGG - chr4_3:545063-545082 Msa0623350:intron 35.0%
ACAAACCACCTGAAGTAAAT+TGG + chr4_3:545071-545090 None:intergenic 35.0%
! TTCTTATTGTCTTTGGAAGC+AGG - chr4_3:545173-545192 Msa0623350:intron 35.0%
! TCTTATTGTCTTTGGAAGCA+GGG - chr4_3:545174-545193 Msa0623350:intron 35.0%
TTGTCAGATGTTGAAGAACT+GGG + chr4_3:545212-545231 None:intergenic 35.0%
TTTGTCAGATGTTGAAGAAC+TGG + chr4_3:545213-545232 None:intergenic 35.0%
GATTTGAGCAAGCTATACTT+TGG - chr4_3:545237-545256 Msa0623350:intron 35.0%
TTTGAGCAAGCTATACTTTG+GGG - chr4_3:545239-545258 Msa0623350:intron 35.0%
CTAGGTAGTATAAAGCGATT+TGG + chr4_3:545849-545868 None:intergenic 35.0%
GCTTTATACTACCTAGTGAT+TGG - chr4_3:545853-545872 Msa0623350:CDS 35.0%
! AGTTGCGAGTTAGTTTAGTT+TGG - chr4_3:545993-546012 Msa0623350:CDS 35.0%
GTATGCATTGCACAAACAAT+GGG + chr4_3:546085-546104 None:intergenic 35.0%
TGTATGCATTGCACAAACAA+TGG + chr4_3:546086-546105 None:intergenic 35.0%
AAAGTAAGATTGACAGGACT+TGG - chr4_3:546222-546241 Msa0623350:intron 35.0%
TCTCAAGAAGAACATAGCTA+TGG - chr4_3:546533-546552 Msa0623350:intron 35.0%
CTCAAGAAGAACATAGCTAT+GGG - chr4_3:546534-546553 Msa0623350:intron 35.0%
! GTAGGCTTGTAGTATTTTGT+GGG + chr4_3:546657-546676 None:intergenic 35.0%
! TGTAGGCTTGTAGTATTTTG+TGG + chr4_3:546658-546677 None:intergenic 35.0%
AATGCTGAAGGGAATTATGT+AGG + chr4_3:546675-546694 None:intergenic 35.0%
AACAAAGGAGAAATGCTGAA+GGG + chr4_3:546686-546705 None:intergenic 35.0%
TGTTTCTCACATCAAGTACA+AGG - chr4_3:546758-546777 Msa0623350:five_prime_UTR 35.0%
TGTGTTGAAACAAGAGAGTT+AGG - chr4_3:546997-547016 Msa0623350:five_prime_UTR 35.0%
TGTTACCACTCACTAAGGAT+TGG - chr4_3:542972-542991 Msa0623350:three_prime_UTR 40.0%
GTTACCACTCACTAAGGATT+GGG - chr4_3:542973-542992 Msa0623350:three_prime_UTR 40.0%
GATTGGGTATCACTCGATTT+GGG - chr4_3:542989-543008 Msa0623350:three_prime_UTR 40.0%
GGACACTCACTAAAAAGATG+AGG - chr4_3:543010-543029 Msa0623350:three_prime_UTR 40.0%
AACAGAACAGAACAGAACAG+AGG - chr4_3:543221-543240 Msa0623350:three_prime_UTR 40.0%
AAATCAAATCAGCACAGTGG+AGG + chr4_3:543263-543282 None:intergenic 40.0%
CTTCTCTCTCTTTCTCATTC+TGG - chr4_3:543457-543476 Msa0623350:CDS 40.0%
GGATGGCATTCACAAAATTG+CGG + chr4_3:543781-543800 None:intergenic 40.0%
AACAGCCTTCTTATCTCCTT+TGG + chr4_3:543958-543977 None:intergenic 40.0%
TATGACTTCCATGTTGCTCA+TGG - chr4_3:544026-544045 Msa0623350:intron 40.0%
GAGCATGCCTATTCAATACA+AGG - chr4_3:544076-544095 Msa0623350:intron 40.0%
TTTGATGTTGCCCATATGTG+TGG - chr4_3:544146-544165 Msa0623350:intron 40.0%
GAGGCTTAAACCACACATAT+GGG + chr4_3:544159-544178 None:intergenic 40.0%
TGAGGCTTAAACCACACATA+TGG + chr4_3:544160-544179 None:intergenic 40.0%
TATGTGTGGTTTAAGCCTCA+AGG - chr4_3:544160-544179 Msa0623350:intron 40.0%
ATGTGTGGTTTAAGCCTCAA+GGG - chr4_3:544161-544180 Msa0623350:intron 40.0%
! AAACAGCATCTTTTCCCTTG+AGG + chr4_3:544178-544197 None:intergenic 40.0%
CAGCAATGACTAACTTCTCA+AGG + chr4_3:544205-544224 None:intergenic 40.0%
! GTTTTCACTAACGAAAAGGG+AGG - chr4_3:544263-544282 Msa0623350:intron 40.0%
TTTCACTAACGAAAAGGGAG+GGG - chr4_3:544265-544284 Msa0623350:intron 40.0%
CGATGATTCCGTCATTACTA+AGG - chr4_3:544292-544311 Msa0623350:intron 40.0%
TTCCGTCATTACTAAGGTCA+CGG - chr4_3:544298-544317 Msa0623350:intron 40.0%
ATCCGTGACCTTAGTAATGA+CGG + chr4_3:544303-544322 None:intergenic 40.0%
CACGGATCATCACATTTACT+TGG - chr4_3:544316-544335 Msa0623350:intron 40.0%
TTTACTTGGTTGTGAATGCC+GGG - chr4_3:544330-544349 Msa0623350:intron 40.0%
CAAATCTTTATCTCTGCACC+CGG + chr4_3:544351-544370 None:intergenic 40.0%
ACTCAAAAGCAGCAAGAGAT+AGG + chr4_3:544565-544584 None:intergenic 40.0%
ATTCTGAGTGAAACAGATGG+AGG + chr4_3:544731-544750 None:intergenic 40.0%
GCTATTCTGAGTGAAACAGA+TGG + chr4_3:544734-544753 None:intergenic 40.0%
ACCAAAAGAGACACAGGTTA+TGG + chr4_3:544834-544853 None:intergenic 40.0%
CGAAGTGTGTTATCAAATGG+CGG - chr4_3:544935-544954 Msa0623350:intron 40.0%
TGTCAGATGTTGAAGAACTG+GGG + chr4_3:545211-545230 None:intergenic 40.0%
! TTCCTTTTTGTGTGTGTGTG+TGG - chr4_3:545320-545339 Msa0623350:intron 40.0%
AACCACACACACACACAAAA+AGG + chr4_3:545325-545344 None:intergenic 40.0%
!! TAACAGAGGTATTGGAGAGT+TGG + chr4_3:545926-545945 None:intergenic 40.0%
GAAGGGAAAGTAAGATTGAC+AGG - chr4_3:546216-546235 Msa0623350:intron 40.0%
ACAGCACATTACACCAATTG+AGG - chr4_3:546302-546321 Msa0623350:intron 40.0%
CACAGTGAGATTCAAGATGA+AGG - chr4_3:546465-546484 Msa0623350:intron 40.0%
AGTGAGATTCAAGATGAAGG+AGG - chr4_3:546468-546487 Msa0623350:intron 40.0%
GCTATGTTCTTCTTGAGACA+AGG + chr4_3:546531-546550 None:intergenic 40.0%
GCTATGGGATATGTCAAATC+TGG - chr4_3:546549-546568 Msa0623350:intron 40.0%
AAATCTGGATTGCACAAAGC+AGG - chr4_3:546564-546583 Msa0623350:intron 40.0%
ATTCGAGGAAAAGCGAATGA+AGG - chr4_3:546606-546625 Msa0623350:intron 40.0%
CAACAAAGGAGAAATGCTGA+AGG + chr4_3:546687-546706 None:intergenic 40.0%
TCAAGTACAAGGCTTCATCT+TGG - chr4_3:546769-546788 Msa0623350:five_prime_UTR 40.0%
GCACATGTGATACATTGCAA+TGG + chr4_3:546925-546944 None:intergenic 40.0%
GATACCCAATCCTTAGTGAG+TGG + chr4_3:542980-542999 None:intergenic 45.0%
GGATTGGGTATCACTCGATT+TGG - chr4_3:542988-543007 Msa0623350:three_prime_UTR 45.0%
CGGAAATCAAATCAGCACAG+TGG + chr4_3:543266-543285 None:intergenic 45.0%
CTCTCTCTTTCTCATTCTGG+TGG - chr4_3:543460-543479 Msa0623350:CDS 45.0%
CTCTTTCTCATTCTGGTGGT+TGG - chr4_3:543464-543483 Msa0623350:CDS 45.0%
!! TAAATTCGGTGTCAGCTCAG+TGG + chr4_3:543753-543772 None:intergenic 45.0%
TCTTATCTCCTTTGGCGAGA+CGG + chr4_3:543950-543969 None:intergenic 45.0%
TCTCGCCAAAGGAGATAAGA+AGG - chr4_3:543950-543969 Msa0623350:intron 45.0%
TCTTACCACCATGAGCAACA+TGG + chr4_3:544037-544056 None:intergenic 45.0%
TGTTGCTCATGGTGGTAAGA+TGG - chr4_3:544037-544056 Msa0623350:intron 45.0%
GGTAAGATGGTTCCATTTGC+TGG - chr4_3:544050-544069 Msa0623350:intron 45.0%
! AGATGGTTCCATTTGCTGGA+TGG - chr4_3:544054-544073 Msa0623350:intron 45.0%
ACAGTCAATGTTCCAGTTCC+AGG + chr4_3:544245-544264 None:intergenic 45.0%
CGGGTGCAGAGATAAAGATT+TGG - chr4_3:544349-544368 Msa0623350:intron 45.0%
!! GGAGCATATGAAGGCATTCA+AGG - chr4_3:544382-544401 Msa0623350:intron 45.0%
!! ATGAAGGCATTCAAGGCCAA+AGG - chr4_3:544389-544408 Msa0623350:intron 45.0%
GAGAACTCTACTTGCTCTAC+AGG - chr4_3:544442-544461 Msa0623350:intron 45.0%
! GCCATAACCTGTGTCTCTTT+TGG - chr4_3:544830-544849 Msa0623350:intron 45.0%
ACACTCAATGCTGTCAATCG+CGG + chr4_3:545007-545026 None:intergenic 45.0%
CATTGACGTTCGTTACAGTG+AGG + chr4_3:545147-545166 None:intergenic 45.0%
TTCCGTGTGTTGGACATCAA+TGG - chr4_3:545264-545283 Msa0623350:intron 45.0%
AGCCATTGATGTCCAACACA+CGG + chr4_3:545269-545288 None:intergenic 45.0%
AGTGCTTTCTCACACGAACA+GGG - chr4_3:545292-545311 Msa0623350:intron 45.0%
CACACTCTAATGGGACTTTC+AGG - chr4_3:546112-546131 Msa0623350:intron 45.0%
! AATGGGACTTTCAGGTACAC+TGG - chr4_3:546120-546139 Msa0623350:intron 45.0%
TTCAGGTACACTGGAGAAGA+TGG - chr4_3:546129-546148 Msa0623350:intron 45.0%
AGATCTACTGCATGCTCTGA+AGG + chr4_3:546171-546190 None:intergenic 45.0%
GTTCCATGTCATTGCCATAC+AGG + chr4_3:546284-546303 None:intergenic 45.0%
CACATTACACCAATTGAGGC+AGG - chr4_3:546306-546325 Msa0623350:intron 45.0%
AATTGAGGCAGGACTGACAT+GGG - chr4_3:546317-546336 Msa0623350:intron 45.0%
! TGACATGGGCTATAGGTAAG+AGG - chr4_3:546331-546350 Msa0623350:intron 45.0%
! AGAGCAGAAGGTGGTTTTCT+AGG - chr4_3:546357-546376 Msa0623350:intron 45.0%
ATCTTGAAACAGCTCGCAGA+TGG - chr4_3:546390-546409 Msa0623350:intron 45.0%
AATGAAACCGACACGCCTTA+TGG + chr4_3:546421-546440 None:intergenic 45.0%
!! CGTGTCGGTTTCATTTCTTC+TGG - chr4_3:546426-546445 Msa0623350:intron 45.0%
ATCTCACTGTGACTTCTAGC+AGG + chr4_3:546456-546475 None:intergenic 45.0%
GATGAAGGAGGCAACAACAT+TGG - chr4_3:546480-546499 Msa0623350:intron 45.0%
AACATTGGTGAAGTCACCAG+TGG - chr4_3:546495-546514 Msa0623350:intron 45.0%
!! TTAAATAATTTAAATAAAGA+GGG + chr4_3:543078-543097 None:intergenic 5.0%
!! ATTAAATAATTTAAATAAAG+AGG + chr4_3:543079-543098 None:intergenic 5.0%
TCAAATCAGCACAGTGGAGG+AGG + chr4_3:543260-543279 None:intergenic 50.0%
AGAAAATGAGAGGGGGCTTG+TGG - chr4_3:543901-543920 Msa0623350:intron 50.0%
TGCTCGCAGATGTTTCGCTA+CGG - chr4_3:543977-543996 Msa0623350:intron 50.0%
GACTTCCATGTTGCTCATGG+TGG - chr4_3:544029-544048 Msa0623350:intron 50.0%
! AAGGCATTCAAGGCCAAAGG+TGG - chr4_3:544392-544411 Msa0623350:intron 50.0%
GACTGCACCAAAAGAGACAC+AGG + chr4_3:544840-544859 None:intergenic 50.0%
TTGAAGAACTGGGGCAGCAA+GGG + chr4_3:545202-545221 None:intergenic 50.0%
CAGTGCTTTCTCACACGAAC+AGG - chr4_3:545291-545310 Msa0623350:intron 50.0%
GCATGCAGTAGATCTTGCCA+AGG - chr4_3:546176-546195 Msa0623350:intron 50.0%
GATAGTCTACGCCTTGAAGC+TGG - chr4_3:546252-546271 Msa0623350:intron 50.0%
ACAGGCACAATCCAGCTTCA+AGG + chr4_3:546266-546285 None:intergenic 50.0%
GAAGCTGGATTGTGCCTGTA+TGG - chr4_3:546267-546286 Msa0623350:intron 50.0%
GTGCCTGTATGGCAATGACA+TGG - chr4_3:546278-546297 Msa0623350:intron 50.0%
CATGTCAGTCCTGCCTCAAT+TGG + chr4_3:546318-546337 None:intergenic 50.0%
CAATTGAGGCAGGACTGACA+TGG - chr4_3:546316-546335 Msa0623350:intron 50.0%
GGTAAGAGGAGAAGAGCAGA+AGG - chr4_3:546345-546364 Msa0623350:intron 50.0%
AAGAGGAGAAGAGCAGAAGG+TGG - chr4_3:546348-546367 Msa0623350:intron 50.0%
TCGCAGATGGTCCTTCCATA+AGG - chr4_3:546403-546422 Msa0623350:intron 50.0%
AAACCGACACGCCTTATGGA+AGG + chr4_3:546417-546436 None:intergenic 50.0%
TCACTGTGACTTCTAGCAGG+TGG + chr4_3:546453-546472 None:intergenic 50.0%
ATTGGTGAAGTCACCAGTGG+TGG - chr4_3:546498-546517 Msa0623350:intron 50.0%
ACAAGGACTGAATCCACCAC+TGG + chr4_3:546514-546533 None:intergenic 50.0%
CGAGACGGCGAGTGATTGAT+TGG + chr4_3:543935-543954 None:intergenic 55.0%
GGCATGCTCCATCCAGCAAA+TGG + chr4_3:544065-544084 None:intergenic 55.0%
GATGTTGCTGCACTTGCACC+TGG - chr4_3:544224-544243 Msa0623350:intron 55.0%
GAGACACAGGTTATGGCGCA+GGG + chr4_3:544827-544846 None:intergenic 55.0%
AGAGACACAGGTTATGGCGC+AGG + chr4_3:544828-544847 None:intergenic 55.0%
TGAAGAACTGGGGCAGCAAG+GGG + chr4_3:545201-545220 None:intergenic 55.0%
GTTGAAGAACTGGGGCAGCA+AGG + chr4_3:545203-545222 None:intergenic 55.0%
! CTTTGGGGAGTTCCGTGTGT+TGG - chr4_3:545254-545273 Msa0623350:intron 55.0%
! GCAGGACTGACATGGGCTAT+AGG - chr4_3:546324-546343 Msa0623350:intron 55.0%
GGTCCTTCCATAAGGCGTGT+CGG - chr4_3:546411-546430 Msa0623350:intron 55.0%
AGAGGGGGCTTGTGGCAACT+TGG - chr4_3:543909-543928 Msa0623350:intron 60.0%
ATCACTCGCCGTCTCGCCAA+AGG - chr4_3:543939-543958 Msa0623350:intron 60.0%
GCTGCACTTGCACCTGGAAC+TGG - chr4_3:544230-544249 Msa0623350:intron 60.0%
CCACGACACATCGCCACCTT+TGG + chr4_3:544408-544427 None:intergenic 60.0%
CCAAAGGTGGCGATGTGTCG+TGG - chr4_3:544405-544424 Msa0623350:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 542970 547044 542970 ID=Msa0623350;Name=Msa0623350
chr4_3 mRNA 542970 547044 542970 ID=Msa0623350-mRNA-1;Parent=Msa0623350;Name=Msa0623350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=346|1|1|1|0.66|0.5|4|364|407
chr4_3 exon 542970 543880 542970 ID=Msa0623350-mRNA-1:exon:196;Parent=Msa0623350-mRNA-1
chr4_3 exon 544701 544819 544701 ID=Msa0623350-mRNA-1:exon:195;Parent=Msa0623350-mRNA-1
chr4_3 exon 545551 546111 545551 ID=Msa0623350-mRNA-1:exon:194;Parent=Msa0623350-mRNA-1
chr4_3 exon 546702 547044 546702 ID=Msa0623350-mRNA-1:exon:193;Parent=Msa0623350-mRNA-1
chr4_3 five_prime_UTR 546702 547044 546702 ID=Msa0623350-mRNA-1:five_prime_utr;Parent=Msa0623350-mRNA-1
chr4_3 five_prime_UTR 546109 546111 546109 ID=Msa0623350-mRNA-1:five_prime_utr;Parent=Msa0623350-mRNA-1
chr4_3 CDS 545551 546108 545551 ID=Msa0623350-mRNA-1:cds;Parent=Msa0623350-mRNA-1
chr4_3 CDS 544701 544819 544701 ID=Msa0623350-mRNA-1:cds;Parent=Msa0623350-mRNA-1
chr4_3 CDS 543334 543880 543334 ID=Msa0623350-mRNA-1:cds;Parent=Msa0623350-mRNA-1
chr4_3 three_prime_UTR 542970 543333 542970 ID=Msa0623350-mRNA-1:three_prime_utr;Parent=Msa0623350-mRNA-1
Gene Sequence

>Msa0623350

ATGAGAGGGGGCTTGTGGCAACTTGGCCAATCAATCACTCGCCGTCTCGCCAAAGGAGATAAGAAGGCTGTTGCTCGCAGATGTTTCGCTACGGATTCTGACTTGAAAAAGACTGCTCTTTATGACTTCCATGTTGCTCATGGTGGTAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAATACAAGGACTCAATCATGGACTCAACCTTAAACTGTAGACAGAATGGTAGTCTTTTTGATGTTGCCCATATGTGTGGTTTAAGCCTCAAGGGAAAAGATGCTGTTTCTTTCCTTGAGAAGTTAGTCATTGCTGATGTTGCTGCACTTGCACCTGGAACTGGAACATTGACTGTTTTCACTAACGAAAAGGGAGGGGCTATCGATGATTCCGTCATTACTAAGGTCACGGATCATCACATTTACTTGGTTGTGAATGCCGGGTGCAGAGATAAAGATTTGGCTCATATTGAGGAGCATATGAAGGCATTCAAGGCCAAAGGTGGCGATGTGTCGTGGCACATTCATGACGAGAGAACTCTACTTGCTCTACAGGGTCCCCTTGCTGCCCCAGTTCTTCAACATCTGACAAAAGATGATTTGAGCAAGCTATACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTCACACGAACAGGGTACACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGCAGTAGATCTTGCCAAGGCAATACTTGAAAAATCTGAAGGGAAAGTAAGATTGACAGGACTTGGTGCTAGAGATAGTCTACGCCTTGAAGCTGGATTGTGCCTGTATGGCAATGACATGGAACAGCACATTACACCAATTGAGGCAGGACTGACATGGGCTATAGGTAAGAGGAGAAGAGCAGAAGGTGGTTTTCTAGGAGCTGATGTTATCTTGAAACAGCTCGCAGATGGTCCTTCCATAAGGCGTGTCGGTTTCATTTCTTCTGGTCCACCTGCTAGAAGTCACAGTGAGATTCAAGATGAAGGAGGCAACAACATTGGTGAAGTCACCAGTGGTGGATTCAGTCCTTGTCTCAAGAAGAACATAGCTATGGGATATGTCAAATCTGGATTGCACAAAGCAGGTACCAAAGTTAAGATCATTATTCGAGGAAAAGCGAATGAAGGAGTTGTCACAAAGATGCCATTTGTACCCACAAAATACTACAAGCCTACATAA

Protein sequence

>Msa0623350

MRGGLWQLGQSITRRLAKGDKKAVARRCFATDSDLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVAHMCGLSLKGKDAVSFLEKLVIADVAALAPGTGTLTVFTNEKGGAIDDSVITKVTDHHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERTLLALQGPLAAPVLQHLTKDDLSKLYFGEFRVLDINGSQCFLTRTGYTGEDGFEISVPSEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPARSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIIIRGKANEGVVTKMPFVPTKYYKPT*