AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872800 MtrunA17_Chr6g0454011 99.778 450 1 0 1 450 52 501 0.0 917
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872800 AT3G01060.1 77.143 455 93 5 3 450 4 454 0.0 695
Msa0872800 AT3G01060.2 75.385 455 93 6 3 450 4 446 0.0 671
Msa0872800 AT3G01060.3 77.247 356 70 5 3 351 4 355 0.0 535

Find 147 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACCTACTTGCGTTTAT+TGG 0.157234 6_1:-8380406 None:intergenic
TTGCAAAGTTGACAAGTAAT+TGG 0.202629 6_1:-8380662 None:intergenic
AACTCAAATCTGGTGGCTTA+TGG 0.204437 6_1:+8378015 Msa0872800:CDS
GAGAAGAGATTCAATCAATT+TGG 0.225429 6_1:+8376243 Msa0872800:CDS
TTATATTAACACACTATTTC+GGG 0.230043 6_1:-8380872 None:intergenic
GCTTCTGCCACAAGTTCTTC+TGG 0.237288 6_1:+8376271 Msa0872800:CDS
ATTATATTAACACACTATTT+CGG 0.244827 6_1:-8380873 None:intergenic
TCTTGGTCCAGCTAATCTTT+TGG 0.267629 6_1:+8379795 Msa0872800:CDS
AACTTACCTTTAGAATTCTT+TGG 0.273137 6_1:+8378966 Msa0872800:CDS
ACACGTGGAGTATTGGTCTT+AGG 0.275285 6_1:-8375967 None:intergenic
CAAGCCTTCAAGGACATTAT+TGG 0.280700 6_1:+8379452 Msa0872800:CDS
GTTCTACAAATCTTGTTTCT+TGG 0.290967 6_1:+8379778 Msa0872800:CDS
CTTGCAGCTTATCAAAGAAT+TGG 0.308243 6_1:+8378815 Msa0872800:intron
ACTCAAATCTGGTGGCTTAT+GGG 0.342220 6_1:+8378016 Msa0872800:CDS
TTGCAGCTTATCAAAGAATT+GGG 0.346242 6_1:+8378816 Msa0872800:intron
TAATGATCATTACCAACTTC+TGG 0.350183 6_1:-8379071 None:intergenic
TGCTTATTTCCTTAGGAATT+GGG 0.351457 6_1:+8379403 Msa0872800:intron
CTTTCTACCACAAGCCTTCA+AGG 0.353925 6_1:+8379442 Msa0872800:CDS
TTTGTTGGTGGTTCTTTAAA+GGG 0.354232 6_1:+8376190 Msa0872800:CDS
AACAAAAGAAACCTGCAAAA+AGG 0.354552 6_1:+8379615 Msa0872800:CDS
TCCTCAATAGACTCACTATT+AGG 0.356240 6_1:+8376362 Msa0872800:CDS
TCCAACTGATGAGTGTATTC+AGG 0.357974 6_1:+8378055 Msa0872800:CDS
AGAATATTTATTAAAATCCT+TGG 0.358759 6_1:-8381050 None:intergenic
TATGTTGTCCATTTCATATC+AGG 0.362059 6_1:+8380772 Msa0872800:three_prime_UTR
GCGCGCGCTTCTCTCGCAAT+GGG 0.362827 6_1:+8380983 Msa0872800:three_prime_UTR
ATACACACGGGTGGCTGTTT+CGG 0.365078 6_1:-8379498 None:intergenic
TTCTTCAAAAGTGTGGAATT+TGG 0.367618 6_1:-8376136 None:intergenic
ATTAAAATCCTTGGACCATT+GGG 0.372877 6_1:-8381041 None:intergenic
TTGACAGCATTTCACGAGAT+TGG 0.377190 6_1:+8380347 Msa0872800:CDS
CTCTGACATTTGTTCAAAGC+TGG 0.386422 6_1:-8379827 None:intergenic
CACTCATCAGTTGGAGCTAT+AGG 0.386652 6_1:-8378047 None:intergenic
ATGAAATGGACAACATATAT+AGG 0.390621 6_1:-8380766 None:intergenic
TACGAGCACAAAATATTTGT+TGG 0.393683 6_1:+8378876 Msa0872800:CDS
TATTAAAATCCTTGGACCAT+TGG 0.396698 6_1:-8381042 None:intergenic
TTGGAAATTGCAGGAGCAAT+TGG 0.399577 6_1:+8381148 Msa0872800:three_prime_UTR
AAGAAAATTTCCACGTGCTC+AGG 0.400275 6_1:+8378908 Msa0872800:CDS
AGGCCGTGAAGGGTTGTATA+TGG 0.406932 6_1:+8377925 Msa0872800:intron
ACAGTTATCAAACTCAAATC+TGG 0.418618 6_1:+8378005 Msa0872800:CDS
TTACTTGTCAACTTTGCAAA+TGG 0.423972 6_1:+8380666 Msa0872800:three_prime_UTR
GGAACAACAAGCAGTGCTAA+TGG 0.427525 6_1:+8376292 Msa0872800:CDS
AATTTCCACGTGCTCAGGTA+TGG 0.430756 6_1:+8378913 Msa0872800:CDS
TTGTCGATTACAGGTTCATC+AGG 0.430996 6_1:-8379594 None:intergenic
TGCGCGCGCTTCTCTCGCAA+TGG 0.438749 6_1:+8380982 Msa0872800:three_prime_UTR
TGGCCATTACGCGAGGGTGC+TGG 0.439148 6_1:+8381213 Msa0872800:three_prime_UTR
ATGAGGATTTATCCACTCCT+TGG 0.444928 6_1:+8379015 Msa0872800:CDS
CTGGTTATAAAGAACACTAT+TGG 0.446609 6_1:+8381129 Msa0872800:three_prime_UTR
GGGAGGACAATGTATTCAAC+TGG 0.449074 6_1:-8378843 None:intergenic
ATTTGTTCAAAGCTGGCATT+AGG 0.452992 6_1:-8379820 None:intergenic
GTCACCAATAATGTCCTTGA+AGG 0.454818 6_1:-8379456 None:intergenic
AGAACACTATTGGAAATTGC+AGG 0.456153 6_1:+8381139 Msa0872800:three_prime_UTR
CGATGATTCAGGTAAAAGAC+TGG 0.456397 6_1:+8380323 Msa0872800:intron
CTTAGGAATTGGGCCATATG+TGG 0.458324 6_1:+8379413 Msa0872800:intron
TTCGAACAAGAGCAGGCATT+AGG 0.461274 6_1:+8377951 Msa0872800:CDS
TGGACGACCGGTATGATGCT+TGG 0.463217 6_1:+8380464 Msa0872800:CDS
AGGAAAGGACCAAGTGGAAA+AGG 0.464210 6_1:-8376343 None:intergenic
TGAGGATTTATCCACTCCTT+GGG 0.466492 6_1:+8379016 Msa0872800:CDS
GTCTGACACATATGCAGGTT+TGG 0.466538 6_1:+8381077 Msa0872800:three_prime_UTR
GTCATCAGGAGGAAAGTAAC+TGG 0.467030 6_1:-8380530 None:intergenic
GCTGTGAAGAAAACTGTTGC+AGG 0.470318 6_1:+8380598 Msa0872800:CDS
TCATAAACTAACTAATGTAC+TGG 0.474013 6_1:-8376055 None:intergenic
TAGAAAGCAACCTCCACATA+TGG 0.476242 6_1:-8379426 None:intergenic
TTAGGCTCCAAAAGATTAGC+TGG 0.481627 6_1:-8379802 None:intergenic
AAACTCGTCAAGAGACGATA+AGG 0.481885 6_1:-8380560 None:intergenic
GGCTGTAAAGATTCTTAGCA+AGG 0.487404 6_1:+8379560 Msa0872800:CDS
GACTGTTGCGTCTTTCCCAA+TGG 0.487705 6_1:+8381026 Msa0872800:three_prime_UTR
AATTCTAAAGGTAAGTTCAA+TGG 0.489115 6_1:-8378960 None:intergenic
TTGTGCTCGTAAGCGAAAGT+AGG 0.491073 6_1:-8378864 None:intergenic
GGCCGGTGAAATAGAGCAAA+AGG 0.491840 6_1:+8379037 Msa0872800:CDS
TGGACTTGCCACAGGAGTAC+TGG 0.497188 6_1:+8381110 Msa0872800:three_prime_UTR
TGCTCTATTTCACCGGCCCA+AGG 0.499248 6_1:-8379032 None:intergenic
CCACCAGCACCCTCGCGTAA+TGG 0.499280 6_1:-8381216 None:intergenic
GCAACTCAGAAACGTACCTT+TGG 0.499786 6_1:+8381193 Msa0872800:three_prime_UTR
ATTGGTGCGGAGAAGTGAGC+TGG 0.500223 6_1:-8380388 None:intergenic
ACTCATAGAATCCACGATCA+AGG 0.500393 6_1:-8380937 None:intergenic
GATAAGGTTCTCATGTCATC+AGG 0.500570 6_1:-8380544 None:intergenic
TAGCCATATACAACCCTTCA+CGG 0.506857 6_1:-8377928 None:intergenic
TATGGGTGGCACCGAGGCAA+TGG 0.508704 6_1:+8378931 Msa0872800:CDS
GTTCTAAGCTCACCAGAAGT+TGG 0.509275 6_1:+8379059 Msa0872800:CDS
GCAGGTTTGGATACGACTAC+TGG 0.509425 6_1:+8381090 Msa0872800:three_prime_UTR
CTTCAGCAAAGTTCCTGAAA+AGG 0.514868 6_1:+8379885 Msa0872800:CDS
CTTTGATTGATGAAAACAGA+AGG 0.515942 6_1:-8380498 None:intergenic
CAACTGTGCCTGATATGAAA+TGG 0.517411 6_1:-8380780 None:intergenic
TGGGAAAGACGCAACAGTCC+CGG 0.517871 6_1:-8381022 None:intergenic
TTCACCTATCGTCAAGACTC+TGG 0.524890 6_1:+8379861 Msa0872800:CDS
TGGCACCGAGGCAATGGAGT+TGG 0.525912 6_1:+8378937 Msa0872800:CDS
ATCTGCAGGATGGGAAAGAA+TGG 0.526729 6_1:+8379756 Msa0872800:intron
AAAATGCCAAAGAATTCTAA+AGG 0.528304 6_1:-8378972 None:intergenic
TCAGCGTCTGACACATATGC+AGG 0.531235 6_1:+8381072 Msa0872800:three_prime_UTR
TGCAGCTTATCAAAGAATTG+GGG 0.531720 6_1:+8378817 Msa0872800:intron
GCGTCTTTCCCAATGGTCCA+AGG 0.537402 6_1:+8381033 Msa0872800:three_prime_UTR
ACCTGAATACACTCATCAGT+TGG 0.537948 6_1:-8378056 None:intergenic
GATTCTTAGCAAGGGAAAAG+AGG 0.539442 6_1:+8379569 Msa0872800:CDS
ATGGCTATTCGAACAAGAGC+AGG 0.541631 6_1:+8377944 Msa0872800:CDS
ATTTCCACGTGCTCAGGTAT+GGG 0.542777 6_1:+8378914 Msa0872800:CDS
TTAATCGATGTAGGCCGTGA+AGG 0.549348 6_1:+8377914 Msa0872800:intron
GATTTATCCACTCCTTGGGC+CGG 0.550233 6_1:+8379020 Msa0872800:CDS
TGTGCTCGTAAGCGAAAGTA+GGG 0.551144 6_1:-8378863 None:intergenic
GGGACTGTTAACTTGAAGCC+GGG 0.552126 6_1:+8381004 Msa0872800:three_prime_UTR
GGGGACTGTTAACTTGAAGC+CGG 0.552824 6_1:+8381003 Msa0872800:three_prime_UTR
AAAGGTACGTTTCTGAGTTG+CGG 0.553430 6_1:-8381191 None:intergenic
TCCTAATAGTGAGTCTATTG+AGG 0.554177 6_1:-8376363 None:intergenic
CTCATAGAATCCACGATCAA+GGG 0.555182 6_1:-8380936 None:intergenic
ACGACTACTGGACTTGCCAC+AGG 0.558396 6_1:+8381102 Msa0872800:three_prime_UTR
GCTGTAAAGATTCTTAGCAA+GGG 0.559862 6_1:+8379561 Msa0872800:CDS
CCATTACGCGAGGGTGCTGG+TGG 0.562831 6_1:+8381216 Msa0872800:three_prime_UTR
TTTGATTGATGAAAACAGAA+GGG 0.567871 6_1:-8380497 None:intergenic
GGATTCTTTGTTAATACACA+CGG 0.567921 6_1:-8379511 None:intergenic
TATTTCACCGGCCCAAGGAG+TGG 0.574665 6_1:-8379027 None:intergenic
GTGAAGGCCAAGCATCATAC+CGG 0.577363 6_1:-8380471 None:intergenic
GTACCTTTGGCCATTACGCG+AGG 0.580172 6_1:+8381206 Msa0872800:three_prime_UTR
TAATCGATGTAGGCCGTGAA+GGG 0.580253 6_1:+8377915 Msa0872800:intron
AATGGCCAACTCCATTGCCT+CGG 0.585261 6_1:-8378942 None:intergenic
CACCCTCGCGTAATGGCCAA+AGG 0.586993 6_1:-8381209 None:intergenic
TAGGTACATACATGAGATGG+AGG 0.587456 6_1:-8376024 None:intergenic
CCGCACCAATAAACGCAAGT+AGG 0.592444 6_1:+8380401 Msa0872800:CDS
AGCGCGCGCATCGTCATCTG+AGG 0.592777 6_1:-8380969 None:intergenic
CGCGCGCTTCTCTCGCAATG+GGG 0.602768 6_1:+8380984 Msa0872800:three_prime_UTR
AAGACCAGAGTCTTGACGAT+AGG 0.605351 6_1:-8379865 None:intergenic
CTTTATAACCAGTACTCCTG+TGG 0.610314 6_1:-8381118 None:intergenic
ATAATGTCCTTGAAGGCTTG+TGG 0.611563 6_1:-8379449 None:intergenic
TACCTTTGGCCATTACGCGA+GGG 0.615943 6_1:+8381207 Msa0872800:three_prime_UTR
ATAGTGAGTCTATTGAGGAA+AGG 0.617010 6_1:-8376358 None:intergenic
CATATGATCTCCCTTGATCG+TGG 0.618895 6_1:+8380926 Msa0872800:three_prime_UTR
AGGAATTGGGCCATATGTGG+AGG 0.619830 6_1:+8379416 Msa0872800:intron
CCTACTTGCGTTTATTGGTG+CGG 0.626930 6_1:-8380401 None:intergenic
GCCACCCATACCTGAGCACG+TGG 0.627953 6_1:-8378918 None:intergenic
GATTCTTTGTTAATACACAC+GGG 0.629086 6_1:-8379510 None:intergenic
GTTATCAAACTCAAATCTGG+TGG 0.631422 6_1:+8378008 Msa0872800:CDS
GATGATTCAGGTAAAAGACT+GGG 0.634111 6_1:+8380324 Msa0872800:intron
TTGGTGCGGAGAAGTGAGCT+GGG 0.636413 6_1:-8380387 None:intergenic
GTCTAGAGTTCTGACTTCGG+CGG 0.640001 6_1:-8380835 None:intergenic
ACTGTCTAGAGTTCTGACTT+CGG 0.641133 6_1:-8380838 None:intergenic
TGAAGAAAACTGTTGCAGGA+AGG 0.642462 6_1:+8380602 Msa0872800:CDS
TGTTGTTCCAGAAGAACTTG+TGG 0.643404 6_1:-8376278 None:intergenic
GCAGCTTATCAAAGAATTGG+GGG 0.644987 6_1:+8378818 Msa0872800:intron
TTATCTTCTTAAGAATCACA+TGG 0.648783 6_1:-8380803 None:intergenic
AGGTACATACATGAGATGGA+GGG 0.650398 6_1:-8376023 None:intergenic
GTTGCGGCGTCGATGATGAG+AGG 0.650888 6_1:-8381175 None:intergenic
TCCACGTGCTCAGGTATGGG+TGG 0.653736 6_1:+8378917 Msa0872800:CDS
CTCAGGTATGGGTGGCACCG+AGG 0.654459 6_1:+8378925 Msa0872800:CDS
GATGTGGTTCTTCAAAAGTG+TGG 0.655033 6_1:-8376143 None:intergenic
GAAAACAGAAGGGAAAGTGA+AGG 0.656206 6_1:-8380487 None:intergenic
AAGGTTCTCATGTCATCAGG+AGG 0.664702 6_1:-8380541 None:intergenic
TAGACTCACTATTAGGACTG+AGG 0.692333 6_1:+8376369 Msa0872800:CDS
TCTTTGTTAATACACACGGG+TGG 0.695600 6_1:-8379507 None:intergenic
GCTCGTAAGCGAAAGTAGGG+AGG 0.696592 6_1:-8378860 None:intergenic
CTATTGAGGAAAGGACCAAG+TGG 0.697181 6_1:-8376349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGCTTTTATTAATTAAT+TGG + chr6_1:8376426-8376445 Msa0872800:intron 10.0%
!! ATATAAAATCCATATTATTT+AGG + chr6_1:8378754-8378773 Msa0872800:intron 10.0%
!! TATAAAATCCATATTATTTA+GGG + chr6_1:8378755-8378774 Msa0872800:intron 10.0%
!! AAAAAAAACATTATTGGATA+TGG - chr6_1:8375998-8376017 None:intergenic 15.0%
!! GAAGAAAAAAAAAACATTAT+TGG - chr6_1:8376004-8376023 None:intergenic 15.0%
!!! CTTTTATTAATTAATTGGTT+TGG + chr6_1:8376431-8376450 Msa0872800:intron 15.0%
!! AAAGTAGAATATATTGAATT+GGG - chr6_1:8376641-8376660 None:intergenic 15.0%
!! TAAAGTAGAATATATTGAAT+TGG - chr6_1:8376642-8376661 None:intergenic 15.0%
!! CATGTAATAATTTGATAAAA+TGG + chr6_1:8376978-8376997 Msa0872800:intron 15.0%
!!! TTGATTTAGAATTTATTGAT+TGG + chr6_1:8378527-8378546 Msa0872800:intron 15.0%
!! TTATTTACTTACAAAGATTA+AGG - chr6_1:8379369-8379388 None:intergenic 15.0%
!!! AAAATGTAAATGTTTTACAA+TGG + chr6_1:8380737-8380756 Msa0872800:three_prime_UTR 15.0%
!! ATTATATTAACACACTATTT+CGG - chr6_1:8380876-8380895 None:intergenic 15.0%
!! AGAATATTTATTAAAATCCT+TGG - chr6_1:8381053-8381072 None:intergenic 15.0%
!! CAACAAAAAAGTAACAAAAA+TGG + chr6_1:8376090-8376109 Msa0872800:exon 20.0%
!!! TTGAATGTTTTAAATTGATG+TGG - chr6_1:8376162-8376181 None:intergenic 20.0%
!!! TAATTAATTGGTTTGGTTAT+TGG + chr6_1:8376438-8376457 Msa0872800:intron 20.0%
!! TATCATATTATGTCACAAAT+TGG - chr6_1:8376484-8376503 None:intergenic 20.0%
!!! GGACAATATTTTTTTACAAA+TGG - chr6_1:8376532-8376551 None:intergenic 20.0%
!! GATATCAAATTTATTAAGCA+TGG + chr6_1:8377194-8377213 Msa0872800:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr6_1:8377267-8377286 None:intergenic 20.0%
!!! TCAGTTATTTAGTTTAGTTT+TGG + chr6_1:8377810-8377829 Msa0872800:intron 20.0%
!! AAAACAGAATTTCATATACT+AGG - chr6_1:8377868-8377887 None:intergenic 20.0%
!! AAAGAATTCCAATAAAAAAG+AGG - chr6_1:8378423-8378442 None:intergenic 20.0%
!! TTCTAAATCAAATCTGAAAA+TGG - chr6_1:8378518-8378537 None:intergenic 20.0%
!! TAAAATCACCCTAAATAATA+TGG - chr6_1:8378766-8378785 None:intergenic 20.0%
!!! CTTATTTGCATAAGTTTTTT+AGG + chr6_1:8379222-8379241 Msa0872800:intron 20.0%
!! TTATACCTAATATAGTGTTA+GGG + chr6_1:8379961-8379980 Msa0872800:intron 20.0%
!!! GTCTATAGTTTTGTTAATTT+AGG + chr6_1:8380695-8380714 Msa0872800:three_prime_UTR 20.0%
!!! TATAGTTTTGTTAATTTAGG+AGG + chr6_1:8380698-8380717 Msa0872800:three_prime_UTR 20.0%
!!! TAAATGTTTTACAATGGAAT+AGG + chr6_1:8380743-8380762 Msa0872800:three_prime_UTR 20.0%
!! TTATATTAACACACTATTTC+GGG - chr6_1:8380875-8380894 None:intergenic 20.0%
!!! ATTCTAATTTTATGAGTTCA+TGG + chr6_1:8380903-8380922 Msa0872800:three_prime_UTR 20.0%
!!! TAATGTACTGGTTTTGTTTT+AGG - chr6_1:8376046-8376065 None:intergenic 25.0%
! TCATAAACTAACTAATGTAC+TGG - chr6_1:8376058-8376077 None:intergenic 25.0%
! CAAAAAAGTAACAAAAATGG+TGG + chr6_1:8376093-8376112 Msa0872800:exon 25.0%
!!! CATTCAAGTTCAAATTTTGT+TGG + chr6_1:8376175-8376194 Msa0872800:CDS 25.0%
! TTGTAAAAAAATATTGTCCC+AGG + chr6_1:8376533-8376552 Msa0872800:intron 25.0%
! GTTGTATTGAAAAGTGAAAT+GGG - chr6_1:8376567-8376586 None:intergenic 25.0%
! TGTTGTATTGAAAAGTGAAA+TGG - chr6_1:8376568-8376587 None:intergenic 25.0%
! ATGACACTTCATTAGATTAA+AGG - chr6_1:8377092-8377111 None:intergenic 25.0%
! ATAATCCACTCTATATAACA+AGG - chr6_1:8377514-8377533 None:intergenic 25.0%
!! TAAGAGATTGGTAATCATAA+TGG - chr6_1:8378086-8378105 None:intergenic 25.0%
!! TAACTTCGAATGATCTTTTA+TGG + chr6_1:8378109-8378128 Msa0872800:intron 25.0%
!! TTTCTTCTCTTTCACATTTT+TGG + chr6_1:8378165-8378184 Msa0872800:intron 25.0%
!! TCTATGAATTCCACATATTT+TGG + chr6_1:8378442-8378461 Msa0872800:intron 25.0%
!! ATTTTGGACCATTGTTTATT+TGG + chr6_1:8378458-8378477 Msa0872800:intron 25.0%
!! AATTCTAAAGGTAAGTTCAA+TGG - chr6_1:8378963-8378982 None:intergenic 25.0%
!!! AACTTACCTTTAGAATTCTT+TGG + chr6_1:8378966-8378985 Msa0872800:CDS 25.0%
! AAAATGCCAAAGAATTCTAA+AGG - chr6_1:8378975-8378994 None:intergenic 25.0%
!!! TGGTAATGATCATTAGTTTT+TGG + chr6_1:8379079-8379098 Msa0872800:intron 25.0%
! GGATATTATCATACTAAGTT+TGG + chr6_1:8379100-8379119 Msa0872800:intron 25.0%
! AATAAGCTAAAAGCAGTTTA+GGG - chr6_1:8379208-8379227 None:intergenic 25.0%
! AAATAAGCTAAAAGCAGTTT+AGG - chr6_1:8379209-8379228 None:intergenic 25.0%
!!! ATTTTTTGCTGATGCTAAAA+GGG - chr6_1:8379535-8379554 None:intergenic 25.0%
! CAAAATGAAATGAAACTTGA+TGG + chr6_1:8379728-8379747 Msa0872800:intron 25.0%
! GTTATACCTAATATAGTGTT+AGG + chr6_1:8379960-8379979 Msa0872800:intron 25.0%
! TAAAATTACTCAATCCAAAC+AGG - chr6_1:8379987-8380006 None:intergenic 25.0%
! TATGGAAATAAGCTAGAAAA+GGG - chr6_1:8380085-8380104 None:intergenic 25.0%
! TTATGGAAATAAGCTAGAAA+AGG - chr6_1:8380086-8380105 None:intergenic 25.0%
!! TTATGACTTTGAGAATCTTA+AGG - chr6_1:8380258-8380277 None:intergenic 25.0%
! TTCTCAAAGTCATAATATTG+AGG + chr6_1:8380263-8380282 Msa0872800:intron 25.0%
! TTTGATTGATGAAAACAGAA+GGG - chr6_1:8380500-8380519 None:intergenic 25.0%
! ATGAAATGGACAACATATAT+AGG - chr6_1:8380769-8380788 None:intergenic 25.0%
! TTATCTTCTTAAGAATCACA+TGG - chr6_1:8380806-8380825 None:intergenic 25.0%
!! TTTTAGGTACATACATGAGA+TGG - chr6_1:8376030-8376049 None:intergenic 30.0%
! TTCTTCAAAAGTGTGGAATT+TGG - chr6_1:8376139-8376158 None:intergenic 30.0%
! TCAAGTTCAAATTTTGTTGG+TGG + chr6_1:8376178-8376197 Msa0872800:CDS 30.0%
!!! TTTTGTTGGTGGTTCTTTAA+AGG + chr6_1:8376189-8376208 Msa0872800:CDS 30.0%
!! TTTGTTGGTGGTTCTTTAAA+GGG + chr6_1:8376190-8376209 Msa0872800:CDS 30.0%
GAGAAGAGATTCAATCAATT+TGG + chr6_1:8376243-8376262 Msa0872800:CDS 30.0%
! AGATTTTACTTCAACTTCAC+TGG + chr6_1:8376316-8376335 Msa0872800:CDS 30.0%
ACAAATGGCTCAGTTATTAA+GGG - chr6_1:8376517-8376536 None:intergenic 30.0%
TACAAATGGCTCAGTTATTA+AGG - chr6_1:8376518-8376537 None:intergenic 30.0%
AGTGTATAAATGAAAGAGAG+AGG - chr6_1:8376721-8376740 None:intergenic 30.0%
ACACATGTAATATGCGAAAA+TGG + chr6_1:8376853-8376872 Msa0872800:intron 30.0%
ACATGTAATATGCGAGAAAA+TGG + chr6_1:8376936-8376955 Msa0872800:intron 30.0%
! CATTAGATTAAAGGTGTGTT+TGG - chr6_1:8377083-8377102 None:intergenic 30.0%
!!! TTTTTTGAACAGCATTGCTA+AGG + chr6_1:8377146-8377165 Msa0872800:intron 30.0%
ATTCCGTGTAATTATTGTGT+CGG + chr6_1:8377291-8377310 Msa0872800:intron 30.0%
TGTAGGTGAGAAAGAATAAA+TGG - chr6_1:8377400-8377419 None:intergenic 30.0%
! CCAAAGATTGTGATTTTTGT+AGG - chr6_1:8377417-8377436 None:intergenic 30.0%
CCTACAAAAATCACAATCTT+TGG + chr6_1:8377414-8377433 Msa0872800:intron 30.0%
CAGAAAAGGAAATTGTTCTT+TGG - chr6_1:8377467-8377486 None:intergenic 30.0%
! ATTTCCTTTTCTGAATTCTG+TGG + chr6_1:8377474-8377493 Msa0872800:intron 30.0%
! TTTCCTTTTCTGAATTCTGT+GGG + chr6_1:8377475-8377494 Msa0872800:intron 30.0%
AATCTTCTCAACATGTGAAA+AGG - chr6_1:8377572-8377591 None:intergenic 30.0%
ACATGTTGAGAAGATTACAA+CGG + chr6_1:8377576-8377595 Msa0872800:intron 30.0%
!! ACAACGGTCTTTACTTTTAT+TGG + chr6_1:8377592-8377611 Msa0872800:intron 30.0%
! CTACATCGATTAACACAAAA+AGG - chr6_1:8377907-8377926 None:intergenic 30.0%
! CTTTTTGTGTTAATCGATGT+AGG + chr6_1:8377905-8377924 Msa0872800:intron 30.0%
ACAGTTATCAAACTCAAATC+TGG + chr6_1:8378005-8378024 Msa0872800:CDS 30.0%
ACAACTTGAATAGACTATTC+CGG - chr6_1:8378198-8378217 None:intergenic 30.0%
TCGAAGTCATTATAGATCTA+GGG - chr6_1:8378346-8378365 None:intergenic 30.0%
TTCGAAGTCATTATAGATCT+AGG - chr6_1:8378347-8378366 None:intergenic 30.0%
!!! CATGGTTTCCTCTTTTTTAT+TGG + chr6_1:8378412-8378431 Msa0872800:intron 30.0%
AAACAATGGTCCAAAATATG+TGG - chr6_1:8378455-8378474 None:intergenic 30.0%
AGATAGCTCCAAATAAACAA+TGG - chr6_1:8378469-8378488 None:intergenic 30.0%
!! ATCTGAGTTCTTTTGATTCA+AGG + chr6_1:8378485-8378504 Msa0872800:intron 30.0%
TTGCAGCTTATCAAAGAATT+GGG + chr6_1:8378816-8378835 Msa0872800:intron 30.0%
TACGAGCACAAAATATTTGT+TGG + chr6_1:8378876-8378895 Msa0872800:CDS 30.0%
! CGTGGAAATTTTCTTGAAAA+CGG - chr6_1:8378903-8378922 None:intergenic 30.0%
! CGCAAAAACTTTAAAAGATG+AGG + chr6_1:8378998-8379017 Msa0872800:CDS 30.0%
TAATGATCATTACCAACTTC+TGG - chr6_1:8379074-8379093 None:intergenic 30.0%
TTACGCTTATTTACTGACAT+AGG + chr6_1:8379133-8379152 Msa0872800:intron 30.0%
TCTCATTTGCTTATTTCCTT+AGG + chr6_1:8379396-8379415 Msa0872800:intron 30.0%
TTGCTTATTTCCTTAGGAAT+TGG + chr6_1:8379402-8379421 Msa0872800:intron 30.0%
TGCTTATTTCCTTAGGAATT+GGG + chr6_1:8379403-8379422 Msa0872800:intron 30.0%
GATTCTTTGTTAATACACAC+GGG - chr6_1:8379513-8379532 None:intergenic 30.0%
GGATTCTTTGTTAATACACA+CGG - chr6_1:8379514-8379533 None:intergenic 30.0%
!!! CATTTTTTGCTGATGCTAAA+AGG - chr6_1:8379536-8379555 None:intergenic 30.0%
! CTTTTAGCATCAGCAAAAAA+TGG + chr6_1:8379534-8379553 Msa0872800:CDS 30.0%
!! TTTCTTTTGTTGTCGATTAC+AGG - chr6_1:8379606-8379625 None:intergenic 30.0%
AACAAAAGAAACCTGCAAAA+AGG + chr6_1:8379615-8379634 Msa0872800:CDS 30.0%
! GTTCTACAAATCTTGTTTCT+TGG + chr6_1:8379778-8379797 Msa0872800:CDS 30.0%
! AGGAAGAATATTACCTTTTC+AGG - chr6_1:8379901-8379920 None:intergenic 30.0%
! TTTAGTTCATGTACTGACAT+AGG + chr6_1:8380003-8380022 Msa0872800:intron 30.0%
CACTATTTGCATAACTATCA+TGG - chr6_1:8380114-8380133 None:intergenic 30.0%
!! TGCATTTTTGGATGAGTTTT+TGG + chr6_1:8380444-8380463 Msa0872800:CDS 30.0%
CTTTGATTGATGAAAACAGA+AGG - chr6_1:8380501-8380520 None:intergenic 30.0%
! CTTCTGTTTTCATCAATCAA+AGG + chr6_1:8380499-8380518 Msa0872800:CDS 30.0%
TTGCAAAGTTGACAAGTAAT+TGG - chr6_1:8380665-8380684 None:intergenic 30.0%
TTACTTGTCAACTTTGCAAA+TGG + chr6_1:8380666-8380685 Msa0872800:three_prime_UTR 30.0%
TATGTTGTCCATTTCATATC+AGG + chr6_1:8380772-8380791 Msa0872800:three_prime_UTR 30.0%
ATTAAAATCCTTGGACCATT+GGG - chr6_1:8381044-8381063 None:intergenic 30.0%
TATTAAAATCCTTGGACCAT+TGG - chr6_1:8381045-8381064 None:intergenic 30.0%
CTGGTTATAAAGAACACTAT+TGG + chr6_1:8381129-8381148 Msa0872800:three_prime_UTR 30.0%
ATAGTGAGTCTATTGAGGAA+AGG - chr6_1:8376361-8376380 None:intergenic 35.0%
TCCTCAATAGACTCACTATT+AGG + chr6_1:8376362-8376381 Msa0872800:CDS 35.0%
TCCTAATAGTGAGTCTATTG+AGG - chr6_1:8376366-8376385 None:intergenic 35.0%
AATGCACCAATACTTGACAA+AGG + chr6_1:8376679-8376698 Msa0872800:intron 35.0%
AATCTGTGTGAACTGTGAAA+TGG + chr6_1:8376747-8376766 Msa0872800:intron 35.0%
TCTCAAATTATTAGCGGTGT+TGG - chr6_1:8377261-8377280 None:intergenic 35.0%
ACACCGACACAATAATTACA+CGG - chr6_1:8377297-8377316 None:intergenic 35.0%
TCCACTCTATATAACAAGGA+AGG - chr6_1:8377510-8377529 None:intergenic 35.0%
!! TTGGCATTGACAATGCTTAA+TGG + chr6_1:8377829-8377848 Msa0872800:intron 35.0%
GTTATCAAACTCAAATCTGG+TGG + chr6_1:8378008-8378027 Msa0872800:CDS 35.0%
! TCGAAGTTAGCTTAAGAGAT+TGG - chr6_1:8378098-8378117 None:intergenic 35.0%
!!! TCACATTTTTGGTAGTCAAC+CGG + chr6_1:8378176-8378195 Msa0872800:intron 35.0%
AACATAATGCGGTCTACAAT+AGG + chr6_1:8378240-8378259 Msa0872800:intron 35.0%
ACATAATGCGGTCTACAATA+GGG + chr6_1:8378241-8378260 Msa0872800:intron 35.0%
!!! AATAGGGCTCTTTTGGTTTT+GGG + chr6_1:8378257-8378276 Msa0872800:intron 35.0%
TAATGACTTCGAATCTTTCC+TGG + chr6_1:8378354-8378373 Msa0872800:intron 35.0%
TAAGGGAATGAAAGTTTGCA+TGG - chr6_1:8378562-8378581 None:intergenic 35.0%
CTTGCAGCTTATCAAAGAAT+TGG + chr6_1:8378815-8378834 Msa0872800:intron 35.0%
TGCAGCTTATCAAAGAATTG+GGG + chr6_1:8378817-8378836 Msa0872800:intron 35.0%
! AACCTTTTGCTCTATTTCAC+CGG - chr6_1:8379042-8379061 None:intergenic 35.0%
GCTTATTTACTGACATAGGT+GGG + chr6_1:8379137-8379156 Msa0872800:intron 35.0%
ACAAAGATTAAGGCTCTGTT+TGG - chr6_1:8379359-8379378 None:intergenic 35.0%
AGCATCAGCAAAAAATGGTT+TGG + chr6_1:8379539-8379558 Msa0872800:CDS 35.0%
GCTGTAAAGATTCTTAGCAA+GGG + chr6_1:8379561-8379580 Msa0872800:CDS 35.0%
AAGAAACCTGCAAAAAGGTT+AGG + chr6_1:8379620-8379639 Msa0872800:intron 35.0%
AGAAACCTGCAAAAAGGTTA+GGG + chr6_1:8379621-8379640 Msa0872800:intron 35.0%
ATTTGTTCAAAGCTGGCATT+AGG - chr6_1:8379823-8379842 None:intergenic 35.0%
CTAGATTGCAACTTGATTAG+TGG - chr6_1:8379941-8379960 None:intergenic 35.0%
ATAAGCTAGAAAAGGGCTTA+TGG - chr6_1:8380078-8380097 None:intergenic 35.0%
TAACTATCATGGAGAGCTTA+TGG - chr6_1:8380103-8380122 None:intergenic 35.0%
!! GCATTGTTTTACGATGATTC+AGG + chr6_1:8380312-8380331 Msa0872800:intron 35.0%
GATGATTCAGGTAAAAGACT+GGG + chr6_1:8380324-8380343 Msa0872800:intron 35.0%
CTCATCCAAAAATGCAAATG+CGG - chr6_1:8380440-8380459 None:intergenic 35.0%
AGAACACTATTGGAAATTGC+AGG + chr6_1:8381139-8381158 Msa0872800:three_prime_UTR 35.0%
!!! TTGGATATGGTTTTGACACG+TGG - chr6_1:8375985-8376004 None:intergenic 40.0%
AGGTACATACATGAGATGGA+GGG - chr6_1:8376026-8376045 None:intergenic 40.0%
TAGGTACATACATGAGATGG+AGG - chr6_1:8376027-8376046 None:intergenic 40.0%
GATGTGGTTCTTCAAAAGTG+TGG - chr6_1:8376146-8376165 None:intergenic 40.0%
TGTTGTTCCAGAAGAACTTG+TGG - chr6_1:8376281-8376300 None:intergenic 40.0%
!!! ACTGGTTTTCCTTTTCCACT+TGG + chr6_1:8376334-8376353 Msa0872800:CDS 40.0%
TAGACTCACTATTAGGACTG+AGG + chr6_1:8376369-8376388 Msa0872800:CDS 40.0%
ATGGCTCAGTTATTAAGGGA+CGG - chr6_1:8376513-8376532 None:intergenic 40.0%
TGAAATGGGTCAAGATTCCT+GGG - chr6_1:8376553-8376572 None:intergenic 40.0%
TGAGTGCCTTTGTCAAGTAT+TGG - chr6_1:8376688-8376707 None:intergenic 40.0%
TGAACTGTGAAATGGTCTGT+TGG + chr6_1:8376755-8376774 Msa0872800:intron 40.0%
!! TCTGTTGGCTCAGTTAAACT+GGG + chr6_1:8376770-8376789 Msa0872800:intron 40.0%
GAACAGCATTGCTAAGGAAT+AGG + chr6_1:8377152-8377171 Msa0872800:intron 40.0%
GTTCCCACAGAATTCAGAAA+AGG - chr6_1:8377481-8377500 None:intergenic 40.0%
! GCCTTCCTTGTTATATAGAG+TGG + chr6_1:8377506-8377525 Msa0872800:intron 40.0%
GACAATGCTTAATGGCATGT+TGG + chr6_1:8377837-8377856 Msa0872800:intron 40.0%
TAGCCATATACAACCCTTCA+CGG - chr6_1:8377931-8377950 None:intergenic 40.0%
AACTCAAATCTGGTGGCTTA+TGG + chr6_1:8378015-8378034 Msa0872800:CDS 40.0%
ACTCAAATCTGGTGGCTTAT+GGG + chr6_1:8378016-8378035 Msa0872800:CDS 40.0%
TCCAACTGATGAGTGTATTC+AGG + chr6_1:8378055-8378074 Msa0872800:CDS 40.0%
ACCTGAATACACTCATCAGT+TGG - chr6_1:8378059-8378078 None:intergenic 40.0%
!!! CAATAGGGCTCTTTTGGTTT+TGG + chr6_1:8378256-8378275 Msa0872800:intron 40.0%
ATTCCCTTAGTAATGCTGCA+AGG + chr6_1:8378573-8378592 Msa0872800:intron 40.0%
! GCACTGACACTTCATATTGA+AGG + chr6_1:8378627-8378646 Msa0872800:intron 40.0%
! CTTCATATTGAAGGTGTGTC+CGG + chr6_1:8378636-8378655 Msa0872800:intron 40.0%
ACATGATACTGACACGTAGA+CGG - chr6_1:8378690-8378709 None:intergenic 40.0%
!!! ACTGTTAGTTTTGTGAGCAC+AGG + chr6_1:8378730-8378749 Msa0872800:intron 40.0%
GCAGCTTATCAAAGAATTGG+GGG + chr6_1:8378818-8378837 Msa0872800:intron 40.0%
AAGAAAATTTCCACGTGCTC+AGG + chr6_1:8378908-8378927 Msa0872800:CDS 40.0%
ATGAGGATTTATCCACTCCT+TGG + chr6_1:8379015-8379034 Msa0872800:CDS 40.0%
TGAGGATTTATCCACTCCTT+GGG + chr6_1:8379016-8379035 Msa0872800:CDS 40.0%
CGCTTATTTACTGACATAGG+TGG + chr6_1:8379136-8379155 Msa0872800:intron 40.0%
TAGAAAGCAACCTCCACATA+TGG - chr6_1:8379429-8379448 None:intergenic 40.0%
TCTTTGTTAATACACACGGG+TGG - chr6_1:8379510-8379529 None:intergenic 40.0%
GGCTGTAAAGATTCTTAGCA+AGG + chr6_1:8379560-8379579 Msa0872800:CDS 40.0%
GATTCTTAGCAAGGGAAAAG+AGG + chr6_1:8379569-8379588 Msa0872800:CDS 40.0%
! TTGTCGATTACAGGTTCATC+AGG - chr6_1:8379597-8379616 None:intergenic 40.0%
AAGTGAGTTGCGTACTTTAG+AGG + chr6_1:8379681-8379700 Msa0872800:intron 40.0%
! CATTTTGAACTCGAGCGAAA+AGG - chr6_1:8379715-8379734 None:intergenic 40.0%
! ACTTGATGGTTGTAATCTGC+AGG + chr6_1:8379742-8379761 Msa0872800:intron 40.0%
ATGGTTGTAATCTGCAGGAT+GGG + chr6_1:8379747-8379766 Msa0872800:intron 40.0%
! TCTTGGTCCAGCTAATCTTT+TGG + chr6_1:8379795-8379814 Msa0872800:CDS 40.0%
TTAGGCTCCAAAAGATTAGC+TGG - chr6_1:8379805-8379824 None:intergenic 40.0%
CTCTGACATTTGTTCAAAGC+TGG - chr6_1:8379830-8379849 None:intergenic 40.0%
CTTCAGCAAAGTTCCTGAAA+AGG + chr6_1:8379885-8379904 Msa0872800:CDS 40.0%
TGGAAATGCAGTGATACAAC+AGG - chr6_1:8379921-8379940 None:intergenic 40.0%
ACAGGCCCTAACACTATATT+AGG - chr6_1:8379969-8379988 None:intergenic 40.0%
ATATAGTGTTAGGGCCTGTT+TGG + chr6_1:8379970-8379989 Msa0872800:intron 40.0%
TAGGCACTTGTGAGACTATT+TGG + chr6_1:8380022-8380041 Msa0872800:intron 40.0%
AGGCACTTGTGAGACTATTT+GGG + chr6_1:8380023-8380042 Msa0872800:intron 40.0%
AGACTATTTGGGAGAGCTTA+GGG + chr6_1:8380034-8380053 Msa0872800:intron 40.0%
ATCTTAAGGATGAACAGTGC+AGG - chr6_1:8380244-8380263 None:intergenic 40.0%
CGATGATTCAGGTAAAAGAC+TGG + chr6_1:8380323-8380342 Msa0872800:intron 40.0%
TTGACAGCATTTCACGAGAT+TGG + chr6_1:8380347-8380366 Msa0872800:CDS 40.0%
TCAGACCTACTTGCGTTTAT+TGG - chr6_1:8380409-8380428 None:intergenic 40.0%
GAAAACAGAAGGGAAAGTGA+AGG - chr6_1:8380490-8380509 None:intergenic 40.0%
GATAAGGTTCTCATGTCATC+AGG - chr6_1:8380547-8380566 None:intergenic 40.0%
AAACTCGTCAAGAGACGATA+AGG - chr6_1:8380563-8380582 None:intergenic 40.0%
! ATCGTCTCTTGACGAGTTTT+TGG + chr6_1:8380564-8380583 Msa0872800:CDS 40.0%
!!! TCTTGACGAGTTTTTGGTCT+CGG + chr6_1:8380570-8380589 Msa0872800:CDS 40.0%
TGAAGAAAACTGTTGCAGGA+AGG + chr6_1:8380602-8380621 Msa0872800:CDS 40.0%
CAACTGTGCCTGATATGAAA+TGG - chr6_1:8380783-8380802 None:intergenic 40.0%
! ACTGTCTAGAGTTCTGACTT+CGG - chr6_1:8380841-8380860 None:intergenic 40.0%
CTCATAGAATCCACGATCAA+GGG - chr6_1:8380939-8380958 None:intergenic 40.0%
ACTCATAGAATCCACGATCA+AGG - chr6_1:8380940-8380959 None:intergenic 40.0%
CTTTATAACCAGTACTCCTG+TGG - chr6_1:8381121-8381140 None:intergenic 40.0%
TTGGAAATTGCAGGAGCAAT+TGG + chr6_1:8381148-8381167 Msa0872800:three_prime_UTR 40.0%
! AAAGGTACGTTTCTGAGTTG+CGG - chr6_1:8381194-8381213 None:intergenic 40.0%
!! ACACGTGGAGTATTGGTCTT+AGG - chr6_1:8375970-8375989 None:intergenic 45.0%
!! GGTTTTGACACGTGGAGTAT+TGG - chr6_1:8375977-8375996 None:intergenic 45.0%
GGAACAACAAGCAGTGCTAA+TGG + chr6_1:8376292-8376311 Msa0872800:CDS 45.0%
AGGAAAGGACCAAGTGGAAA+AGG - chr6_1:8376346-8376365 None:intergenic 45.0%
CTATTGAGGAAAGGACCAAG+TGG - chr6_1:8376352-8376371 None:intergenic 45.0%
CTCAGTTATTAAGGGACGGA+GGG - chr6_1:8376509-8376528 None:intergenic 45.0%
GTGAAATGGGTCAAGATTCC+TGG - chr6_1:8376554-8376573 None:intergenic 45.0%
!! GTCTGTTGGCTCAGTTAAAC+TGG + chr6_1:8376769-8376788 Msa0872800:intron 45.0%
TTGGCTCAGTTAAACTGGGA+CGG + chr6_1:8376774-8376793 Msa0872800:intron 45.0%
TTGTATAGACCCTAAGCCCA+CGG - chr6_1:8377359-8377378 None:intergenic 45.0%
TACATGTGTCAGTGTCGCAT+TGG + chr6_1:8377728-8377747 Msa0872800:intron 45.0%
TTAATCGATGTAGGCCGTGA+AGG + chr6_1:8377914-8377933 Msa0872800:intron 45.0%
TAATCGATGTAGGCCGTGAA+GGG + chr6_1:8377915-8377934 Msa0872800:intron 45.0%
ATGGCTATTCGAACAAGAGC+AGG + chr6_1:8377944-8377963 Msa0872800:CDS 45.0%
TTCGAACAAGAGCAGGCATT+AGG + chr6_1:8377951-8377970 Msa0872800:CDS 45.0%
CACTCATCAGTTGGAGCTAT+AGG - chr6_1:8378050-8378069 None:intergenic 45.0%
CGTGTGAGCGTAACATAATG+CGG + chr6_1:8378229-8378248 Msa0872800:intron 45.0%
! GGTCTACAATAGGGCTCTTT+TGG + chr6_1:8378250-8378269 Msa0872800:intron 45.0%
ATCTTTCCTGGACACTTCCA+TGG + chr6_1:8378366-8378385 Msa0872800:intron 45.0%
ATGTGATGTAAAGCTCCTGC+CGG - chr6_1:8378395-8378414 None:intergenic 45.0%
CTGCCTTGCAGCATTACTAA+GGG - chr6_1:8378579-8378598 None:intergenic 45.0%
GTGCAACAAAGCTCTTGATC+AGG - chr6_1:8378611-8378630 None:intergenic 45.0%
GGGAGGACAATGTATTCAAC+TGG - chr6_1:8378846-8378865 None:intergenic 45.0%
TGTGCTCGTAAGCGAAAGTA+GGG - chr6_1:8378866-8378885 None:intergenic 45.0%
TTGTGCTCGTAAGCGAAAGT+AGG - chr6_1:8378867-8378886 None:intergenic 45.0%
AATTTCCACGTGCTCAGGTA+TGG + chr6_1:8378913-8378932 Msa0872800:CDS 45.0%
ATTTCCACGTGCTCAGGTAT+GGG + chr6_1:8378914-8378933 Msa0872800:CDS 45.0%
! GTTCTAAGCTCACCAGAAGT+TGG + chr6_1:8379059-8379078 Msa0872800:CDS 45.0%
CACATATGGCCCAATTCCTA+AGG - chr6_1:8379415-8379434 None:intergenic 45.0%
CTTAGGAATTGGGCCATATG+TGG + chr6_1:8379413-8379432 Msa0872800:intron 45.0%
GATGGTTGTAATCTGCAGGA+TGG + chr6_1:8379746-8379765 Msa0872800:intron 45.0%
ATCTGCAGGATGGGAAAGAA+TGG + chr6_1:8379756-8379775 Msa0872800:intron 45.0%
TTCACCTATCGTCAAGACTC+TGG + chr6_1:8379861-8379880 Msa0872800:CDS 45.0%
AAGACCAGAGTCTTGACGAT+AGG - chr6_1:8379868-8379887 None:intergenic 45.0%
GAGACTATTTGGGAGAGCTT+AGG + chr6_1:8380033-8380052 Msa0872800:intron 45.0%
CCTACTTGCGTTTATTGGTG+CGG - chr6_1:8380404-8380423 None:intergenic 45.0%
! TCGTGCCGCATTTGCATTTT+TGG + chr6_1:8380432-8380451 Msa0872800:CDS 45.0%
!! TGGATGAGTTTTTGGACGAC+CGG + chr6_1:8380452-8380471 Msa0872800:CDS 45.0%
GTCATCAGGAGGAAAGTAAC+TGG - chr6_1:8380533-8380552 None:intergenic 45.0%
AAGGTTCTCATGTCATCAGG+AGG - chr6_1:8380544-8380563 None:intergenic 45.0%
GCTGTGAAGAAAACTGTTGC+AGG + chr6_1:8380598-8380617 Msa0872800:CDS 45.0%
CATATGATCTCCCTTGATCG+TGG + chr6_1:8380926-8380945 Msa0872800:three_prime_UTR 45.0%
GTCTGACACATATGCAGGTT+TGG + chr6_1:8381077-8381096 Msa0872800:three_prime_UTR 45.0%
GCAACTCAGAAACGTACCTT+TGG + chr6_1:8381193-8381212 Msa0872800:three_prime_UTR 45.0%
GCTTCTGCCACAAGTTCTTC+TGG + chr6_1:8376271-8376290 Msa0872800:CDS 50.0%
GCTCAGTTATTAAGGGACGG+AGG - chr6_1:8376510-8376529 None:intergenic 50.0%
CTCAGTTAAACTGGGACGGA+GGG + chr6_1:8376778-8376797 Msa0872800:intron 50.0%
TCTACCTGTCAGTGTCTGTC+TGG - chr6_1:8377666-8377685 None:intergenic 50.0%
TGTCAGTGTCGCATTGGAGT+CGG + chr6_1:8377734-8377753 Msa0872800:intron 50.0%
AGTCGGACACTGACACATGT+TGG + chr6_1:8377751-8377770 Msa0872800:intron 50.0%
ACACATGTTGGACTCCAGAC+AGG + chr6_1:8377763-8377782 Msa0872800:intron 50.0%
AGGCCGTGAAGGGTTGTATA+TGG + chr6_1:8377925-8377944 Msa0872800:intron 50.0%
GGCAGGAGCTTTACATCACA+TGG + chr6_1:8378394-8378413 Msa0872800:intron 50.0%
CCTGCCTTGCAGCATTACTA+AGG - chr6_1:8378580-8378599 None:intergenic 50.0%
CCTTAGTAATGCTGCAAGGC+AGG + chr6_1:8378577-8378596 Msa0872800:intron 50.0%
!! AGTGTCGGTCTGTCAAACAC+CGG - chr6_1:8378658-8378677 None:intergenic 50.0%
TACTGACACGTAGACGGTGT+CGG - chr6_1:8378684-8378703 None:intergenic 50.0%
AATGGCCAACTCCATTGCCT+CGG - chr6_1:8378945-8378964 None:intergenic 50.0%
GATTTATCCACTCCTTGGGC+CGG + chr6_1:8379020-8379039 Msa0872800:CDS 50.0%
GGCCGGTGAAATAGAGCAAA+AGG + chr6_1:8379037-8379056 Msa0872800:CDS 50.0%
AGGAATTGGGCCATATGTGG+AGG + chr6_1:8379416-8379435 Msa0872800:intron 50.0%
ATACACACGGGTGGCTGTTT+CGG - chr6_1:8379501-8379520 None:intergenic 50.0%
! ACGAGCCCTAACCTTTTTGC+AGG - chr6_1:8379629-8379648 None:intergenic 50.0%
CCGCACCAATAAACGCAAGT+AGG + chr6_1:8380401-8380420 Msa0872800:CDS 50.0%
GTGAAGGCCAAGCATCATAC+CGG - chr6_1:8380474-8380493 None:intergenic 50.0%
!!! GACGAGTTTTTGGTCTCGGT+TGG + chr6_1:8380574-8380593 Msa0872800:CDS 50.0%
! GTCTAGAGTTCTGACTTCGG+CGG - chr6_1:8380838-8380857 None:intergenic 50.0%
! GGGGACTGTTAACTTGAAGC+CGG + chr6_1:8381003-8381022 Msa0872800:three_prime_UTR 50.0%
! GGGACTGTTAACTTGAAGCC+GGG + chr6_1:8381004-8381023 Msa0872800:three_prime_UTR 50.0%
GACTGTTGCGTCTTTCCCAA+TGG + chr6_1:8381026-8381045 Msa0872800:three_prime_UTR 50.0%
TCAGCGTCTGACACATATGC+AGG + chr6_1:8381072-8381091 Msa0872800:three_prime_UTR 50.0%
GCAGGTTTGGATACGACTAC+TGG + chr6_1:8381090-8381109 Msa0872800:three_prime_UTR 50.0%
TACCTTTGGCCATTACGCGA+GGG + chr6_1:8381207-8381226 Msa0872800:three_prime_UTR 50.0%
GCTCAGTTAAACTGGGACGG+AGG + chr6_1:8376777-8376796 Msa0872800:intron 55.0%
GTCTGTGGCTGTGTCGTGTT+AGG - chr6_1:8377229-8377248 None:intergenic 55.0%
TGTTGGCGTGTCAGTGTCTG+TGG - chr6_1:8377244-8377263 None:intergenic 55.0%
!! TGTCGGTGTCGTGTTGACAC+CGG + chr6_1:8377308-8377327 Msa0872800:intron 55.0%
!! CTCGGATTAGTGGTGTGTCC+CGG - chr6_1:8377330-8377349 None:intergenic 55.0%
! ACGGACACTCCTCGGATTAG+TGG - chr6_1:8377340-8377359 None:intergenic 55.0%
!! ACTAATCCGAGGAGTGTCCG+TGG + chr6_1:8377339-8377358 Msa0872800:intron 55.0%
!! CTAATCCGAGGAGTGTCCGT+GGG + chr6_1:8377340-8377359 Msa0872800:intron 55.0%
TGCACCAGACAGACACTGAC+AGG + chr6_1:8377659-8377678 Msa0872800:intron 55.0%
ATGTTGGACTCCAGACAGGC+AGG + chr6_1:8377767-8377786 Msa0872800:intron 55.0%
TCAAGATGTGCCTGCCTGTC+TGG - chr6_1:8377780-8377799 None:intergenic 55.0%
GCTCGTAAGCGAAAGTAGGG+AGG - chr6_1:8378863-8378882 None:intergenic 55.0%
TATTTCACCGGCCCAAGGAG+TGG - chr6_1:8379030-8379049 None:intergenic 55.0%
TGCTCTATTTCACCGGCCCA+AGG - chr6_1:8379035-8379054 None:intergenic 55.0%
TTGGTGCGGAGAAGTGAGCT+GGG - chr6_1:8380390-8380409 None:intergenic 55.0%
ATTGGTGCGGAGAAGTGAGC+TGG - chr6_1:8380391-8380410 None:intergenic 55.0%
TGGACGACCGGTATGATGCT+TGG + chr6_1:8380464-8380483 Msa0872800:CDS 55.0%
TGGGAAAGACGCAACAGTCC+CGG - chr6_1:8381025-8381044 None:intergenic 55.0%
GCGTCTTTCCCAATGGTCCA+AGG + chr6_1:8381033-8381052 Msa0872800:three_prime_UTR 55.0%
ACGACTACTGGACTTGCCAC+AGG + chr6_1:8381102-8381121 Msa0872800:three_prime_UTR 55.0%
! TGGACTTGCCACAGGAGTAC+TGG + chr6_1:8381110-8381129 Msa0872800:three_prime_UTR 55.0%
GTACCTTTGGCCATTACGCG+AGG + chr6_1:8381206-8381225 Msa0872800:three_prime_UTR 55.0%
!! GTCGGTGTCGTGTTGACACC+GGG + chr6_1:8377309-8377328 Msa0872800:intron 60.0%
CGGGACACACCACTAATCCG+AGG + chr6_1:8377328-8377347 Msa0872800:intron 60.0%
CTAAGCCCACGGACACTCCT+CGG - chr6_1:8377348-8377367 None:intergenic 60.0%
!! GAGGAGTGTCCGTGGGCTTA+GGG + chr6_1:8377347-8377366 Msa0872800:intron 60.0%
CTGGACACTTCCATGGCAGC+CGG + chr6_1:8378373-8378392 Msa0872800:intron 60.0%
!! AGACGGTGTCGGTGCAGTGT+CGG - chr6_1:8378673-8378692 None:intergenic 60.0%
TCCACGTGCTCAGGTATGGG+TGG + chr6_1:8378917-8378936 Msa0872800:CDS 60.0%
! TATGGGTGGCACCGAGGCAA+TGG + chr6_1:8378931-8378950 Msa0872800:CDS 60.0%
! TGGCACCGAGGCAATGGAGT+TGG + chr6_1:8378937-8378956 Msa0872800:CDS 60.0%
!! GTTGCGGCGTCGATGATGAG+AGG - chr6_1:8381178-8381197 None:intergenic 60.0%
CACCCTCGCGTAATGGCCAA+AGG - chr6_1:8381212-8381231 None:intergenic 60.0%
!! CGAGGAGTGTCCGTGGGCTT+AGG + chr6_1:8377346-8377365 Msa0872800:intron 65.0%
!! CGGCTGCCATGGAAGTGTCC+AGG - chr6_1:8378375-8378394 None:intergenic 65.0%
ACACTTCCATGGCAGCCGGC+AGG + chr6_1:8378377-8378396 Msa0872800:intron 65.0%
! AAAGCTCCTGCCGGCTGCCA+TGG - chr6_1:8378386-8378405 None:intergenic 65.0%
GCCACCCATACCTGAGCACG+TGG - chr6_1:8378921-8378940 None:intergenic 65.0%
CTCAGGTATGGGTGGCACCG+AGG + chr6_1:8378925-8378944 Msa0872800:CDS 65.0%
AGCGCGCGCATCGTCATCTG+AGG - chr6_1:8380972-8380991 None:intergenic 65.0%
TGCGCGCGCTTCTCTCGCAA+TGG + chr6_1:8380982-8381001 Msa0872800:three_prime_UTR 65.0%
GCGCGCGCTTCTCTCGCAAT+GGG + chr6_1:8380983-8381002 Msa0872800:three_prime_UTR 65.0%
CGCGCGCTTCTCTCGCAATG+GGG + chr6_1:8380984-8381003 Msa0872800:three_prime_UTR 65.0%
! TGGCCATTACGCGAGGGTGC+TGG + chr6_1:8381213-8381232 Msa0872800:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 8375962 8381237 8375962 ID=Msa0872800;Name=Msa0872800
chr6_1 mRNA 8375962 8381237 8375962 ID=Msa0872800-mRNA-1;Parent=Msa0872800;Name=Msa0872800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=147|1|1|1|1|1|6|604|450
chr6_1 exon 8375962 8376390 8375962 ID=Msa0872800-mRNA-1:exon:2520;Parent=Msa0872800-mRNA-1
chr6_1 exon 8377927 8378076 8377927 ID=Msa0872800-mRNA-1:exon:2521;Parent=Msa0872800-mRNA-1
chr6_1 exon 8378822 8379080 8378822 ID=Msa0872800-mRNA-1:exon:2522;Parent=Msa0872800-mRNA-1
chr6_1 exon 8379418 8379636 8379418 ID=Msa0872800-mRNA-1:exon:2523;Parent=Msa0872800-mRNA-1
chr6_1 exon 8379764 8379906 8379764 ID=Msa0872800-mRNA-1:exon:2524;Parent=Msa0872800-mRNA-1
chr6_1 exon 8380334 8381237 8380334 ID=Msa0872800-mRNA-1:exon:2525;Parent=Msa0872800-mRNA-1
chr6_1 five_prime_UTR 8375962 8376108 8375962 ID=Msa0872800-mRNA-1:five_prime_utr;Parent=Msa0872800-mRNA-1
chr6_1 CDS 8376109 8376390 8376109 ID=Msa0872800-mRNA-1:cds;Parent=Msa0872800-mRNA-1
chr6_1 CDS 8377927 8378076 8377927 ID=Msa0872800-mRNA-1:cds;Parent=Msa0872800-mRNA-1
chr6_1 CDS 8378822 8379080 8378822 ID=Msa0872800-mRNA-1:cds;Parent=Msa0872800-mRNA-1
chr6_1 CDS 8379418 8379636 8379418 ID=Msa0872800-mRNA-1:cds;Parent=Msa0872800-mRNA-1
chr6_1 CDS 8379764 8379906 8379764 ID=Msa0872800-mRNA-1:cds;Parent=Msa0872800-mRNA-1
chr6_1 CDS 8380334 8380633 8380334 ID=Msa0872800-mRNA-1:cds;Parent=Msa0872800-mRNA-1
chr6_1 three_prime_UTR 8380634 8381237 8380634 ID=Msa0872800-mRNA-1:three_prime_utr;Parent=Msa0872800-mRNA-1
Gene Sequence

>Msa0872800

ATGGTGGCAGCAATTGCTGTTTCTTCACCAAATTCCACACTTTTGAAGAACCACATCAATTTAAAACATTCAAGTTCAAATTTTGTTGGTGGTTCTTTAAAGGGTCTTTGCTTGCATGTGAAACAAAGACAACAGAGAAGAGATTCAATCAATTTGGTTGTTGCTTCTGCCACAAGTTCTTCTGGAACAACAAGCAGTGCTAATGGAAGATTTTACTTCAACTTCACTGGTTTTCCTTTTCCACTTGGTCCTTTCCTCAATAGACTCACTATTAGGACTGAGGCCGTGAAGGGTTGTATATGGCTATTCGAACAAGAGCAGGCATTAGGCTTCAGCAGTGTTTCGACAAACATTAGAATGACAGTTATCAAACTCAAATCTGGTGGCTTATGGGTTCATGCACCTATAGCTCCAACTGATGAGTGTATTCAGCTTATCAAAGAATTGGGGGCTCCAGTTGAATACATTGTCCTCCCTACTTTCGCTTACGAGCACAAAATATTTGTTGGTCCGTTTTCAAGAAAATTTCCACGTGCTCAGGTATGGGTGGCACCGAGGCAATGGAGTTGGCCATTGAACTTACCTTTAGAATTCTTTGGCATTTTTCGCGCAAAAACTTTAAAAGATGAGGATTTATCCACTCCTTGGGCCGGTGAAATAGAGCAAAAGGTTCTAAGCTCACCAGAAGTTGGAATTGGGCCATATGTGGAGGTTGCTTTCTACCACAAGCCTTCAAGGACATTATTGGTGACAGACGCTGTTATTCTTGTACCGAAACAGCCACCCGTGTGTATTAACAAAGAATCCCTTTTAGCATCAGCAAAAAATGGTTTGGCTGTAAAGATTCTTAGCAAGGGAAAAGAGGTGCCTGATGAACCTGTAATCGACAACAAAAGAAACCTGCAAAAAGGATGGGAAAGAATGGTTCTACAAATCTTGTTTCTTGGTCCAGCTAATCTTTTGGAGCCTAATGCCAGCTTTGAACAAATGTCAGAGAAGTTGATTGTTTCACCTATCGTCAAGACTCTGGTCTTCAGCAAAGTTCCTGAAAAGGTAAAAGACTGGGTTGACAGCATTTCACGAGATTGGAAGTTTAGAAGAATTATCCCAGCTCACTTCTCCGCACCAATAAACGCAAGTAGGTCTGATTTTCGTGCCGCATTTGCATTTTTGGATGAGTTTTTGGACGACCGGTATGATGCTTGGCCTTCACTTTCCCTTCTGTTTTCATCAATCAAAGGAAAAGCAGCCAGTTACTTTCCTCCTGATGACATGAGAACCTTATCGTCTCTTGACGAGTTTTTGGTCTCGGTTGGAGCTGTGAAGAAAACTGTTGCAGGAAGGAAGAGATGA

Protein sequence

>Msa0872800

MVAAIAVSSPNSTLLKNHINLKHSSSNFVGGSLKGLCLHVKQRQQRRDSINLVVASATSSSGTTSSANGRFYFNFTGFPFPLGPFLNRLTIRTEAVKGCIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTDECIQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPRAQVWVAPRQWSWPLNLPLEFFGIFRAKTLKDEDLSTPWAGEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVILVPKQPPVCINKESLLASAKNGLAVKILSKGKEVPDEPVIDNKRNLQKGWERMVLQILFLGPANLLEPNASFEQMSEKLIVSPIVKTLVFSKVPEKVKDWVDSISRDWKFRRIIPAHFSAPINASRSDFRAAFAFLDEFLDDRYDAWPSLSLLFSSIKGKAASYFPPDDMRTLSSLDEFLVSVGAVKKTVAGRKR*