AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076990 MtrunA17_Chr1g0186021 85.149 505 45 4 1 476 1 504 0.0 846
Msa0076990 MtrunA17_Chr1g0173891 36.890 328 186 5 129 439 1 324 5.52e-63 209
Msa0076990 MtrunA17_Chr8g0380251 35.795 352 201 6 106 439 98 442 9.42e-60 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076990 AT4G17740.1 76.276 392 77 2 99 476 126 515 0.0 617
Msa0076990 AT4G17740.2 76.276 392 77 2 99 476 116 505 0.0 617
Msa0076990 AT3G57680.1 37.183 355 196 7 107 439 121 470 3.46e-69 229
Msa0076990 AT3G57680.3 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0076990 AT3G57680.2 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0076990 AT5G46390.2 35.593 354 193 8 109 439 125 466 4.41e-53 186
Msa0076990 AT5G46390.1 31.760 233 138 7 109 332 125 345 2.25e-25 108

Find 122 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAAAACAAAATTATTT+TGG 0.166886 1_2:+53443604 Msa0076990:three_prime_UTR
GGAAGAGAATCTCCTCTTTC+TGG 0.228002 1_2:+53437812 Msa0076990:CDS
ACAACTTACGAGATGCATTT+TGG 0.229630 1_2:-53440640 None:intergenic
TTCTGGCAGGTTTATTTGTT+TGG 0.248338 1_2:-53443741 None:intergenic
TAATGTAAATGCATTTGTTT+TGG 0.265017 1_2:+53441545 Msa0076990:CDS
AAACAAACGTTGTTTACTTT+TGG 0.274441 1_2:-53436754 None:intergenic
CTGTTTGTGCGGTTGGTTGC+TGG 0.295497 1_2:+53436850 Msa0076990:CDS
TGTCTCTTCACGGTTGTTCA+TGG 0.323178 1_2:-53437928 None:intergenic
TTCTTTACTGTTTGTGCGGT+TGG 0.354326 1_2:+53436843 Msa0076990:CDS
ATTGTGAACAATCCCCATTC+TGG 0.356722 1_2:-53443758 None:intergenic
TAGTGAGTGGTTTGAGGCAG+AGG 0.361449 1_2:+53436462 Msa0076990:five_prime_UTR
GGAACTAAAGGCGCTCTAAC+TGG 0.372863 1_2:+53439188 Msa0076990:CDS
ACAAATAAACCTGCCAGAAT+GGG 0.376363 1_2:+53443745 Msa0076990:three_prime_UTR
CAAAATGCATCTTCATCCTT+AGG 0.378658 1_2:-53443478 None:intergenic
TGTTGGCTCTCCGTACAATA+TGG 0.382476 1_2:-53443148 None:intergenic
AACAAATAAACCTGCCAGAA+TGG 0.385953 1_2:+53443744 Msa0076990:three_prime_UTR
TTAATGGACAGAGTTGGTTT+AGG 0.396696 1_2:+53437877 Msa0076990:CDS
TCGTGGGGTTCGAGATATAC+TGG 0.396807 1_2:+53442089 Msa0076990:CDS
TCCTTCGCAGAAGGAGGAAA+TGG 0.400373 1_2:+53436794 Msa0076990:CDS
TTATGCTGCAGGTTTCAAAC+TGG 0.418269 1_2:+53436644 Msa0076990:intron
ATCGGATGGCATGTCTGCTT+TGG 0.427225 1_2:-53439237 None:intergenic
GCTCTATATGCAGGACCTCC+TGG 0.429225 1_2:-53439284 None:intergenic
TTGTACGGAGAGCCAACATT+TGG 0.429603 1_2:+53443153 Msa0076990:CDS
TTCTGAACCTCTGGCTGTGC+TGG 0.435964 1_2:+53442140 Msa0076990:CDS
CTGAGAGCTCAAATACTGAT+TGG 0.437609 1_2:-53443268 None:intergenic
GATGTTGGTAGAGGATGGTC+AGG 0.439793 1_2:-53443451 None:intergenic
TTCTGTGCTCATATCATCAA+TGG 0.441209 1_2:-53439336 None:intergenic
GTTGTCATTTCAGCTTCTCC+AGG 0.446510 1_2:+53439266 Msa0076990:CDS
CCTAGCAACTTCTGAACCTC+TGG 0.447872 1_2:+53442131 Msa0076990:CDS
ACTGGAGTGGGGATATCAAT+AGG 0.449955 1_2:+53439206 Msa0076990:CDS
AGAGGAGATTCTCTTCCGTC+AGG 0.456230 1_2:-53437806 None:intergenic
TTGCACAGTCTTGACTTCAC+TGG 0.459820 1_2:-53440557 None:intergenic
TGATATGAGCACAGAAAAGT+TGG 0.461597 1_2:+53439343 Msa0076990:CDS
GTCTCTTCACGGTTGTTCAT+GGG 0.462782 1_2:-53437927 None:intergenic
CTCAAACTTCTGAACTTCTC+AGG 0.466160 1_2:-53439053 None:intergenic
CCAGAGGTTCAGAAGTTGCT+AGG 0.467344 1_2:-53442131 None:intergenic
GGAGAGCCAACATTTGGAAA+AGG 0.469937 1_2:+53443159 Msa0076990:CDS
AAGAAGCAATCAATACGTTC+AGG 0.477783 1_2:+53441517 Msa0076990:CDS
TTCTCCACGCCTCCAGAAAG+AGG 0.478035 1_2:-53437824 None:intergenic
GGGGAATTATTTCCTGCAGC+AGG 0.481562 1_2:-53440584 None:intergenic
TGCTCATATCATCAATGGCC+AGG 0.482743 1_2:-53439331 None:intergenic
TGAGAAGTTCAGAAGTTTGA+GGG 0.485226 1_2:+53439055 Msa0076990:CDS
TGTATATTTGTGATAGTCGT+GGG 0.489052 1_2:+53442073 Msa0076990:CDS
CATATGTATCCAGAGGTTTG+TGG 0.494939 1_2:-53443657 None:intergenic
GATGGCATGTCTGCTTTGGT+AGG 0.496814 1_2:-53439233 None:intergenic
AAGTCATACATGTCTCTTCA+CGG 0.503051 1_2:-53437938 None:intergenic
AAGAAAGATGCTTGCCACAT+TGG 0.503483 1_2:+53439004 Msa0076990:CDS
CTTGTTATCTTTCAATGCAC+CGG 0.503714 1_2:-53443121 None:intergenic
TGAACAATCCCCATTCTGGC+AGG 0.504596 1_2:-53443754 None:intergenic
GTTCTGCCTTCACTCTTCCA+TGG 0.505286 1_2:+53436491 Msa0076990:exon
ACAATGTTGCCACAAACCTC+TGG 0.505687 1_2:+53443648 Msa0076990:three_prime_UTR
TGAGTGGTTTGAGGCAGAGG+TGG 0.512701 1_2:+53436465 Msa0076990:five_prime_UTR
TTTGTCTGGAGATGTTATCC+TGG 0.515590 1_2:+53439313 Msa0076990:CDS
GGAAATTACAGAGGACCTGA+TGG 0.515701 1_2:+53440142 Msa0076990:intron
CTGTGCAAGTTACCTGCTGC+AGG 0.516744 1_2:+53440572 Msa0076990:CDS
ACAAGATAGTGAGTGGTTTG+AGG 0.519579 1_2:+53436456 Msa0076990:five_prime_UTR
TGGAGTTATGTTGGTTGTGT+CGG 0.520837 1_2:+53436870 Msa0076990:CDS
AAAGGCGCTCTAACTGGAGT+GGG 0.521920 1_2:+53439194 Msa0076990:CDS
GAGAGCCAACATTTGGAAAA+GGG 0.523087 1_2:+53443160 Msa0076990:CDS
GGAAATAATTCCCCAACAGT+TGG 0.525940 1_2:+53440593 Msa0076990:CDS
GTTGGTTGCTGGAGTTATGT+TGG 0.526117 1_2:+53436861 Msa0076990:CDS
CAGAGGTTCAGAAGTTGCTA+GGG 0.526166 1_2:-53442130 None:intergenic
TGGTTTGAGGCAGAGGTGGT+AGG 0.527360 1_2:+53436469 Msa0076990:five_prime_UTR
AATGCAACAGAGCTTCCATC+AGG 0.527673 1_2:-53440157 None:intergenic
GTCCCTTGAAGGGGCCCTGA+CGG 0.534821 1_2:+53437791 Msa0076990:intron
CTGAGAAGTTCAGAAGTTTG+AGG 0.536007 1_2:+53439054 Msa0076990:CDS
TTATTATTACACGAAGAAGC+AGG 0.538054 1_2:-53443517 None:intergenic
GTGTATATTTGTGATAGTCG+TGG 0.539212 1_2:+53442072 Msa0076990:CDS
TGAAAACCTTGATTCTACTA+CGG 0.541823 1_2:-53436677 None:intergenic
ATCTCCTCTTTCTGGAGGCG+TGG 0.545789 1_2:+53437820 Msa0076990:CDS
TGAAGGCAGTCTGGAACTAA+AGG 0.547910 1_2:+53439176 Msa0076990:intron
GTTGGAGTTTCCTTCGCAGA+AGG 0.548560 1_2:+53436785 Msa0076990:intron
TTTGAGCTCTCAGATGGCTC+AGG 0.548752 1_2:+53443278 Msa0076990:CDS
ACGAAGAAGCAGGATCCTGC+AGG 0.552016 1_2:-53443507 None:intergenic
AGAGCTAGCAATGATCTCCA+TGG 0.553066 1_2:-53436508 None:intergenic
GAAATGATGTTGGTAGAGGA+TGG 0.553668 1_2:-53443456 None:intergenic
GGGTAACGAAGAGGGAAAGA+AGG 0.553709 1_2:-53436540 None:intergenic
TTAGGAAATGATGTTGGTAG+AGG 0.554141 1_2:-53443460 None:intergenic
TCCATTTCCTCCTTCTGCGA+AGG 0.555474 1_2:-53436795 None:intergenic
GTCATTTCAGCTTCTCCAGG+AGG 0.556960 1_2:+53439269 Msa0076990:CDS
AACAAGCGGGCCATATTGTA+CGG 0.558030 1_2:+53443138 Msa0076990:CDS
AATTCTTGTCGATATATGCT+CGG 0.570307 1_2:-53437854 None:intergenic
GGAGGTCCTGCATATAGAGC+TGG 0.574441 1_2:+53439287 Msa0076990:CDS
TACGTCAGAACCACTACGTA+TGG 0.575100 1_2:-53440182 None:intergenic
GGAGTTTCCTTCGCAGAAGG+AGG 0.575657 1_2:+53436788 Msa0076990:CDS
TCTACCAACATCATTTCCTA+AGG 0.576557 1_2:+53443462 Msa0076990:CDS
AAAACACCAGCTCTATATGC+AGG 0.578644 1_2:-53439293 None:intergenic
TCAGTATTTGAGCTCTCAGA+TGG 0.579199 1_2:+53443272 Msa0076990:CDS
TGAGCCTAATCAGGTAAACA+AGG 0.584513 1_2:+53443071 Msa0076990:intron
ATGGCATGTCTGCTTTGGTA+GGG 0.587538 1_2:-53439232 None:intergenic
CAGAAGGAGGAAATGGAACA+AGG 0.588765 1_2:+53436801 Msa0076990:CDS
AGTGCCAGCGAAATATTAGC+CGG 0.591253 1_2:+53443102 Msa0076990:CDS
TGCACCGGCTAATATTTCGC+TGG 0.596104 1_2:-53443106 None:intergenic
GATATGAGCACAGAAAAGTT+GGG 0.598281 1_2:+53439344 Msa0076990:CDS
CAAATAAACCTGCCAGAATG+GGG 0.598520 1_2:+53443746 Msa0076990:three_prime_UTR
GAGGAGATTCTCTTCCGTCA+GGG 0.599213 1_2:-53437805 None:intergenic
TGCATTGAAAGATAACAAGC+GGG 0.604470 1_2:+53443125 Msa0076990:CDS
CGAGATATACTGGATACAGA+TGG 0.605141 1_2:+53442099 Msa0076990:CDS
TCATCCTTAGGAAATGATGT+TGG 0.609434 1_2:-53443466 None:intergenic
TAAAGGCGCTCTAACTGGAG+TGG 0.610725 1_2:+53439193 Msa0076990:CDS
GTGCATTGAAAGATAACAAG+CGG 0.614192 1_2:+53443124 Msa0076990:CDS
ATGCTTCTTTACTGTTTGTG+CGG 0.614941 1_2:+53436839 Msa0076990:CDS
TACCAACTTACGTTAGAGCT+AGG 0.615400 1_2:-53440210 None:intergenic
AAAGCAGACATGCCATCCGA+TGG 0.615475 1_2:+53439239 Msa0076990:CDS
TGAAATGACAACAAGTCCAT+CGG 0.616320 1_2:-53439255 None:intergenic
TCCCGAAAATTGAACTAACT+AGG 0.617585 1_2:+53443708 Msa0076990:three_prime_UTR
AGATTGTTGGGTAACGAAGA+GGG 0.618034 1_2:-53436548 None:intergenic
TGATCTCCATGGAAGAGTGA+AGG 0.622114 1_2:-53436497 None:intergenic
TTGTCAATATCTGTGTGCGC+AGG 0.623787 1_2:-53443332 None:intergenic
AAAAGAAACAAGATAGTGAG+TGG 0.624117 1_2:+53436449 Msa0076990:five_prime_UTR
AGAGAATCTCCTCTTTCTGG+AGG 0.626964 1_2:+53437815 Msa0076990:CDS
GAGATTGTTGGGTAACGAAG+AGG 0.630735 1_2:-53436549 None:intergenic
TAAATCACCTATTATCTCTG+AGG 0.651600 1_2:-53441569 None:intergenic
ATGACAACAAGTCCATCGGA+TGG 0.653408 1_2:-53439251 None:intergenic
AAAATTACCAGCACAGCCAG+AGG 0.668041 1_2:-53442147 None:intergenic
GAGCCTAATCAGGTAAACAA+GGG 0.673106 1_2:+53443072 Msa0076990:intron
GTTGCATTGACCATACGTAG+TGG 0.683901 1_2:+53440172 Msa0076990:CDS
CTATCAATTAGGTTGGACAA+AGG 0.690063 1_2:+53442042 Msa0076990:intron
AAGGCGCTCTAACTGGAGTG+GGG 0.697650 1_2:+53439195 Msa0076990:CDS
GTATATTTGTGATAGTCGTG+GGG 0.714608 1_2:+53442074 Msa0076990:CDS
TGCGCACACAGATATTGACA+AGG 0.734805 1_2:+53443334 Msa0076990:CDS
AGTGAAGGGATCATCCAATG+TGG 0.753176 1_2:-53439018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATTAAATAAAAT+AGG - chr1_2:53436415-53436434 None:intergenic 0.0%
!!! TGAATGTTTTTAAATTTTTA+TGG + chr1_2:53440893-53440912 Msa0076990:intron 10.0%
!! AAAAAATACAAAAAATTAGT+TGG + chr1_2:53441231-53441250 Msa0076990:intron 10.0%
!! TAAAAACAAGAAAAAAAATA+AGG - chr1_2:53441982-53442001 None:intergenic 10.0%
!!! TATTTTCAAAATGATTTTTT+TGG + chr1_2:53443557-53443576 Msa0076990:exon 10.0%
!!! ATTTTCAAAATGATTTTTTT+GGG + chr1_2:53443558-53443577 Msa0076990:exon 10.0%
!!! TTAACAAAACAAAATTATTT+TGG + chr1_2:53443604-53443623 Msa0076990:three_prime_UTR 10.0%
!!! ATAAATATTGTTATTTTACG+CGG - chr1_2:53436628-53436647 None:intergenic 15.0%
!!! AAAGTTACTAAATTTTCAAT+TGG + chr1_2:53436724-53436743 Msa0076990:CDS 15.0%
!!! AAGTTACTAAATTTTCAATT+GGG + chr1_2:53436725-53436744 Msa0076990:CDS 15.0%
!!! AAAGTATTAACTATTGAATA+TGG + chr1_2:53437606-53437625 Msa0076990:intron 15.0%
!!! ACTCTTTATTTTCTTATTAA+TGG + chr1_2:53437642-53437661 Msa0076990:intron 15.0%
!! TTAAACTTTAAGTATCAAAA+TGG + chr1_2:53438789-53438808 Msa0076990:intron 15.0%
!!! TTCAACAAAATTTTAGTTTT+TGG - chr1_2:53439160-53439179 None:intergenic 15.0%
!!! AAAAACTAAAATTTTGTTGA+AGG + chr1_2:53439159-53439178 Msa0076990:intron 15.0%
!! TGATAACTTGATATAAATAT+TGG + chr1_2:53439572-53439591 Msa0076990:intron 15.0%
!!! ATAAAATTTGGTCTTTTAAA+TGG - chr1_2:53440067-53440086 None:intergenic 15.0%
!!! ATTTTCTTTGTAAAAGAAAA+AGG - chr1_2:53440439-53440458 None:intergenic 15.0%
!!! TCTTTAAAATATTCATTAAC+TGG - chr1_2:53440865-53440884 None:intergenic 15.0%
!!! AATTTTTTATCTTATCATTC+CGG + chr1_2:53441778-53441797 Msa0076990:intron 15.0%
!! AGAAATTAAATAATTGTAAC+CGG - chr1_2:53441800-53441819 None:intergenic 15.0%
!! AATCAATTTAATTGTGATTA+TGG + chr1_2:53442905-53442924 Msa0076990:intron 15.0%
!! ATCAATTTAATTGTGATTAT+GGG + chr1_2:53442906-53442925 Msa0076990:intron 15.0%
!! GTGTAATAATAATAATAACA+GGG + chr1_2:53443528-53443547 Msa0076990:CDS 15.0%
!!! AAAATCATTTTGAAAATAAC+TGG - chr1_2:53443555-53443574 None:intergenic 15.0%
!!! AGTTACTAAATTTTCAATTG+GGG + chr1_2:53436726-53436745 Msa0076990:CDS 20.0%
!! TCTTTATAATGAATTTGTGT+TGG + chr1_2:53436947-53436966 Msa0076990:intron 20.0%
!! CTGAATATTCAATACTAAAA+TGG + chr1_2:53437485-53437504 Msa0076990:intron 20.0%
!!! TATTTTCTTATTAATGGTTG+AGG + chr1_2:53437648-53437667 Msa0076990:intron 20.0%
!!! TATATCGACAAGAATTTTAA+TGG + chr1_2:53437861-53437880 Msa0076990:CDS 20.0%
!!! GTTGATAAAAAAAAAGTAAG+AGG - chr1_2:53437974-53437993 None:intergenic 20.0%
!! TAAAATGGTTTAACTGAAAT+CGG + chr1_2:53438134-53438153 Msa0076990:intron 20.0%
!! TTATCATTGTTAATTATGAG+AGG + chr1_2:53438642-53438661 Msa0076990:intron 20.0%
!! CTATATGTGAAATAAACTAA+GGG - chr1_2:53439107-53439126 None:intergenic 20.0%
!! ACTATATGTGAAATAAACTA+AGG - chr1_2:53439108-53439127 None:intergenic 20.0%
!! AAAAGAGACTTAGAATTAAA+TGG + chr1_2:53439842-53439861 Msa0076990:intron 20.0%
!! AATGGTCTATCTATTATATA+TGG + chr1_2:53439860-53439879 Msa0076990:intron 20.0%
!!! GAAAAAGGTATCAATTAATT+AGG - chr1_2:53440424-53440443 None:intergenic 20.0%
!!! ATTTTATATAACCAACTGTT+GGG - chr1_2:53440607-53440626 None:intergenic 20.0%
!!! AATTTTATATAACCAACTGT+TGG - chr1_2:53440608-53440627 None:intergenic 20.0%
!! TTCTATGTACTAACTAAAAA+AGG + chr1_2:53440693-53440712 Msa0076990:intron 20.0%
!! TCTATGTACTAACTAAAAAA+GGG + chr1_2:53440694-53440713 Msa0076990:intron 20.0%
!! ATTATAGCAAGTAAGAATTA+TGG - chr1_2:53440787-53440806 None:intergenic 20.0%
!!! GATTGTTTCTCTTTATATTT+AGG + chr1_2:53441004-53441023 Msa0076990:intron 20.0%
!! TGAAAAGTAAAATGTGATAT+TGG - chr1_2:53441100-53441119 None:intergenic 20.0%
!!! TAATGTAAATGCATTTGTTT+TGG + chr1_2:53441545-53441564 Msa0076990:CDS 20.0%
!! ATCTATTTCAAAATGGTAAA+AGG - chr1_2:53441892-53441911 None:intergenic 20.0%
!! ATGAGAAAATATGTTATCTA+CGG - chr1_2:53442544-53442563 None:intergenic 20.0%
!!! ATATTTTCTCATCTAATTCA+TGG + chr1_2:53442552-53442571 Msa0076990:intron 20.0%
!! CCAAATATACAAAGTATAAA+CGG - chr1_2:53442603-53442622 None:intergenic 20.0%
!!! ATCACAATTAAATTGATTCA+TGG - chr1_2:53442903-53442922 None:intergenic 20.0%
!! TCAATTTAATTGTGATTATG+GGG + chr1_2:53442907-53442926 Msa0076990:intron 20.0%
!! CGTGTAATAATAATAATAAC+AGG + chr1_2:53443527-53443546 Msa0076990:CDS 20.0%
! ATAATCAGAATGATGAAGAA+GGG - chr1_2:53436602-53436621 None:intergenic 25.0%
! AATAATCAGAATGATGAAGA+AGG - chr1_2:53436603-53436622 None:intergenic 25.0%
! AATAACAATATTTATGCTGC+AGG + chr1_2:53436633-53436652 Msa0076990:intron 25.0%
!! AAACAAACGTTGTTTACTTT+TGG - chr1_2:53436757-53436776 None:intergenic 25.0%
! AGAGATAAAACTTACAAGAA+GGG - chr1_2:53436915-53436934 None:intergenic 25.0%
! TAGAGATAAAACTTACAAGA+AGG - chr1_2:53436916-53436935 None:intergenic 25.0%
! AATGAATTTGTGTTGGAATT+TGG + chr1_2:53436954-53436973 Msa0076990:intron 25.0%
! ATGAATTTGTGTTGGAATTT+GGG + chr1_2:53436955-53436974 Msa0076990:intron 25.0%
! TCAGAATGAATTACAAAGAT+AGG - chr1_2:53437469-53437488 None:intergenic 25.0%
! CAAGAGTAAGAGATAAATTT+CGG - chr1_2:53437534-53437553 None:intergenic 25.0%
! ATATAGTACTAGGTAGATTT+GGG - chr1_2:53437691-53437710 None:intergenic 25.0%
! TATATAGTACTAGGTAGATT+TGG - chr1_2:53437692-53437711 None:intergenic 25.0%
!! GCTGAACAAAAACAATTTTA+TGG + chr1_2:53437996-53438015 Msa0076990:intron 25.0%
! TTAACTATATCAGATAGTTC+TGG - chr1_2:53438243-53438262 None:intergenic 25.0%
! TATCTGATATAGTTAAATGC+TGG + chr1_2:53438247-53438266 Msa0076990:intron 25.0%
! TAATCTACAACAAATTGCTT+TGG + chr1_2:53438285-53438304 Msa0076990:intron 25.0%
! TCAAATTTGTGAAGATAAGT+AGG + chr1_2:53438358-53438377 Msa0076990:intron 25.0%
!!! CAGGAAAGTTTTTTTTAAGT+AGG + chr1_2:53438902-53438921 Msa0076990:intron 25.0%
! TAGTAATACTTTCAACTTGT+TGG - chr1_2:53439543-53439562 None:intergenic 25.0%
! TTCCATTGTTGTAGATAAAA+AGG + chr1_2:53439732-53439751 Msa0076990:intron 25.0%
!! TACCTTTTTATCTACAACAA+TGG - chr1_2:53439737-53439756 None:intergenic 25.0%
!! CTAAGTCTCTTTTCATAATT+CGG - chr1_2:53439835-53439854 None:intergenic 25.0%
!! TATTGACTACATGGATTTAA+CGG - chr1_2:53439908-53439927 None:intergenic 25.0%
! GTAATTAAGAACCTCATAAA+TGG - chr1_2:53440024-53440043 None:intergenic 25.0%
!! ATGAGAAGTGCAATAAAATT+TGG - chr1_2:53440079-53440098 None:intergenic 25.0%
! TATTATTACCATTACTTGAG+AGG + chr1_2:53440398-53440417 Msa0076990:intron 25.0%
!! TTTTATATAACCAACTGTTG+GGG - chr1_2:53440606-53440625 None:intergenic 25.0%
! ATCACATGATTAATGCATAT+TGG - chr1_2:53440732-53440751 None:intergenic 25.0%
!!! ATGTATTGATGCCTTTTTTT+TGG + chr1_2:53441131-53441150 Msa0076990:intron 25.0%
! AACACTATTCACCAAAAAAA+AGG - chr1_2:53441145-53441164 None:intergenic 25.0%
! GAGGAATAGAAAATTGTTAT+CGG - chr1_2:53441197-53441216 None:intergenic 25.0%
! TATTAAATTCGGTCATTAGT+TGG + chr1_2:53441357-53441376 Msa0076990:intron 25.0%
!! TAGTGATTGAAAGTATATAG+AGG - chr1_2:53441609-53441628 None:intergenic 25.0%
!! ATTATTTAATTTCTGCAGCA+TGG + chr1_2:53441806-53441825 Msa0076990:intron 25.0%
! CAATGCAATCTATTTCAAAA+TGG - chr1_2:53441899-53441918 None:intergenic 25.0%
! AATAGATTGCATTGCAAAAT+TGG + chr1_2:53441905-53441924 Msa0076990:intron 25.0%
! ATAGATTGCATTGCAAAATT+GGG + chr1_2:53441906-53441925 Msa0076990:intron 25.0%
! GAAAAAAAATAAGGTATGAC+TGG - chr1_2:53441973-53441992 None:intergenic 25.0%
! TCTAACAGATACTATCAATT+AGG + chr1_2:53442031-53442050 Msa0076990:intron 25.0%
! CCGTTTATACTTTGTATATT+TGG + chr1_2:53442600-53442619 Msa0076990:intron 25.0%
! CATTTCTTAATAAACTGTCA+TGG + chr1_2:53442681-53442700 Msa0076990:intron 25.0%
! TTAATAAACTGTCATGGATT+TGG + chr1_2:53442687-53442706 Msa0076990:intron 25.0%
! CTCTCATTTCATAGTTATTT+AGG + chr1_2:53442746-53442765 Msa0076990:intron 25.0%
!!! TAAGTGAAACTACTAGTTTT+AGG + chr1_2:53442780-53442799 Msa0076990:intron 25.0%
! TTACCATACAATTGACAAAT+TGG - chr1_2:53443031-53443050 None:intergenic 25.0%
AAAAGAAACAAGATAGTGAG+TGG + chr1_2:53436449-53436468 Msa0076990:five_prime_UTR 30.0%
TAATCAGAATGATGAAGAAG+GGG - chr1_2:53436601-53436620 None:intergenic 30.0%
TGAAAACCTTGATTCTACTA+CGG - chr1_2:53436680-53436699 None:intergenic 30.0%
! TACTAAATTTTCAATTGGGG+TGG + chr1_2:53436729-53436748 Msa0076990:CDS 30.0%
TCATGTTTGTATCAGACTTT+CGG + chr1_2:53437083-53437102 Msa0076990:intron 30.0%
!! TTAGAAGTTTGTTATGCCAT+CGG + chr1_2:53437222-53437241 Msa0076990:intron 30.0%
TGAGTATCTCTATTTCATGT+GGG + chr1_2:53437354-53437373 Msa0076990:intron 30.0%
TCGATAAGTGAAATGAATGT+AGG - chr1_2:53437381-53437400 None:intergenic 30.0%
TAATCTACACAATCCATGAA+AGG - chr1_2:53437563-53437582 None:intergenic 30.0%
CACTACTAGTATATAGTACT+AGG - chr1_2:53437701-53437720 None:intergenic 30.0%
CTAGTACTATATACTAGTAG+TGG + chr1_2:53437699-53437718 Msa0076990:intron 30.0%
!!! ATTCTTTTTTGTCCCTTGAA+GGG + chr1_2:53437781-53437800 Msa0076990:intron 30.0%
AATTCTTGTCGATATATGCT+CGG - chr1_2:53437857-53437876 None:intergenic 30.0%
!! AGAATTTTAATGGACAGAGT+TGG + chr1_2:53437871-53437890 Msa0076990:CDS 30.0%
ATCATTTATGATTGCCTTCT+AGG + chr1_2:53438046-53438065 Msa0076990:intron 30.0%
TCATTTATGATTGCCTTCTA+GGG + chr1_2:53438047-53438066 Msa0076990:intron 30.0%
TAGAGAGAACTTATGTTTGA+TGG + chr1_2:53438175-53438194 Msa0076990:intron 30.0%
!! ACAAATTGCTTTGGATTAGT+TGG + chr1_2:53438294-53438313 Msa0076990:intron 30.0%
TATGCATGATAACATCTTCA+TGG + chr1_2:53438420-53438439 Msa0076990:intron 30.0%
ATGCATGATAACATCTTCAT+GGG + chr1_2:53438421-53438440 Msa0076990:intron 30.0%
TCCACAGAATAAAAATGGAA+TGG + chr1_2:53438526-53438545 Msa0076990:intron 30.0%
!! ACCATTCCATTTTTATTCTG+TGG - chr1_2:53438530-53438549 None:intergenic 30.0%
TCACATAGATCAGATATATG+TGG - chr1_2:53438678-53438697 None:intergenic 30.0%
CTTTAAGTATCAAAATGGAG+TGG + chr1_2:53438794-53438813 Msa0076990:intron 30.0%
!! TTGTAAACTTTTGACTGCAT+AGG - chr1_2:53438937-53438956 None:intergenic 30.0%
ATGCAACTTTACAGTTCTTA+AGG - chr1_2:53439614-53439633 None:intergenic 30.0%
! CTGAGATGAGAATTTTATGT+TGG + chr1_2:53439648-53439667 Msa0076990:intron 30.0%
! ATGAGAATTTTATGTTGGAC+AGG + chr1_2:53439653-53439672 Msa0076990:intron 30.0%
ACAGGTAGTCATACTAAAAT+AGG + chr1_2:53439671-53439690 Msa0076990:intron 30.0%
GAGAAATAGTTAGAGGAAAA+GGG + chr1_2:53439789-53439808 Msa0076990:intron 30.0%
GTAACAAAGCATATTCTCTA+AGG - chr1_2:53440270-53440289 None:intergenic 30.0%
AAGATGAATCAATGCATTTC+AGG + chr1_2:53440513-53440532 Msa0076990:intron 30.0%
!!! ACTTGCTATAATCCTCATTT+TGG + chr1_2:53440795-53440814 Msa0076990:intron 30.0%
CTCTTTACTATACCAAAATG+AGG - chr1_2:53440810-53440829 None:intergenic 30.0%
TTAACTGGTCAAACTTCATA+TGG - chr1_2:53440850-53440869 None:intergenic 30.0%
AATAAATAAGACAGCTGCAA+GGG - chr1_2:53441065-53441084 None:intergenic 30.0%
AAATAAATAAGACAGCTGCA+AGG - chr1_2:53441066-53441085 None:intergenic 30.0%
!! AATAGTGTTTTTCGATGTCT+AGG + chr1_2:53441156-53441175 Msa0076990:intron 30.0%
!! ATAGTGTTTTTCGATGTCTA+GGG + chr1_2:53441157-53441176 Msa0076990:intron 30.0%
! TTTTTGCAACTATCATTCAG+AGG - chr1_2:53441216-53441235 None:intergenic 30.0%
TTAGTTGGATTGATGCTTAA+TGG + chr1_2:53441246-53441265 Msa0076990:intron 30.0%
TAAATCACCTATTATCTCTG+AGG - chr1_2:53441572-53441591 None:intergenic 30.0%
! CATCCATTGCATATCAATTT+TGG + chr1_2:53441732-53441751 Msa0076990:intron 30.0%
AAAAAATAAGGTATGACTGG+AGG - chr1_2:53441970-53441989 None:intergenic 30.0%
ACAGATACTATCAATTAGGT+TGG + chr1_2:53442035-53442054 Msa0076990:intron 30.0%
TGTATATTTGTGATAGTCGT+GGG + chr1_2:53442073-53442092 Msa0076990:CDS 30.0%
! TGTTTTCTTCATGTACTAGT+TGG + chr1_2:53442265-53442284 Msa0076990:intron 30.0%
TTGGGTAGATAATAGATATG+TGG + chr1_2:53442388-53442407 Msa0076990:intron 30.0%
TGGGTAGATAATAGATATGT+GGG + chr1_2:53442389-53442408 Msa0076990:intron 30.0%
ATTGTGATTATGGGGAAAAT+AGG + chr1_2:53442915-53442934 Msa0076990:intron 30.0%
TTGTGATTATGGGGAAAATA+GGG + chr1_2:53442916-53442935 Msa0076990:intron 30.0%
ACAATTGACAAATTGGAACT+CGG - chr1_2:53443024-53443043 None:intergenic 30.0%
GTTCCAATTTGTCAATTGTA+TGG + chr1_2:53443025-53443044 Msa0076990:intron 30.0%
TAAATATCTTGAGCCTAATC+AGG + chr1_2:53443062-53443081 Msa0076990:intron 30.0%
! ATTTACCCTTTTCCAAATGT+TGG - chr1_2:53443168-53443187 None:intergenic 30.0%
! GGAAAAGGGTAAATTACTTT+TGG + chr1_2:53443174-53443193 Msa0076990:intron 30.0%
!! AGGGTAAATTACTTTTGGTT+TGG + chr1_2:53443179-53443198 Msa0076990:intron 30.0%
TTATTATTACACGAAGAAGC+AGG - chr1_2:53443520-53443539 None:intergenic 30.0%
! TAGTTTTCATATGTATCCAG+AGG - chr1_2:53443667-53443686 None:intergenic 30.0%
! TCCTAGTTAGTTCAATTTTC+GGG - chr1_2:53443712-53443731 None:intergenic 30.0%
! GTCCTAGTTAGTTCAATTTT+CGG - chr1_2:53443713-53443732 None:intergenic 30.0%
! GTTTTTCCGTAGTAGAATCA+AGG + chr1_2:53436671-53436690 Msa0076990:CDS 35.0%
! CATTTTCACTCACACATAAG+AGG + chr1_2:53436698-53436717 Msa0076990:CDS 35.0%
!! ACGTTTGTTTTCCTCAAAGT+TGG + chr1_2:53436767-53436786 Msa0076990:intron 35.0%
ATGCTTCTTTACTGTTTGTG+CGG + chr1_2:53436839-53436858 Msa0076990:CDS 35.0%
TCTGATACAAACATGAACAC+CGG - chr1_2:53437079-53437098 None:intergenic 35.0%
TGATTAAGTAACTAGACCGA+TGG - chr1_2:53437241-53437260 None:intergenic 35.0%
! CAGTTATGTCTCTCATTTTG+AGG + chr1_2:53437266-53437285 Msa0076990:intron 35.0%
GTGAGTATCTCTATTTCATG+TGG + chr1_2:53437353-53437372 Msa0076990:intron 35.0%
TACTTCTCCCATTGTAGATA+AGG + chr1_2:53437436-53437455 Msa0076990:intron 35.0%
TGAATTACAAAGATAGGCAC+TGG - chr1_2:53437463-53437482 None:intergenic 35.0%
! ACTCTTGCATTTTCCTTTCA+TGG + chr1_2:53437547-53437566 Msa0076990:intron 35.0%
! CATGGATTGTGTAGATTAAG+AGG + chr1_2:53437565-53437584 Msa0076990:intron 35.0%
ACTATATACTAGTAGTGGCT+TGG + chr1_2:53437704-53437723 Msa0076990:intron 35.0%
!!! GATTCTTTTTTGTCCCTTGA+AGG + chr1_2:53437780-53437799 Msa0076990:intron 35.0%
!!! TTCTTTTTTGTCCCTTGAAG+GGG + chr1_2:53437782-53437801 Msa0076990:intron 35.0%
! TTAATGGACAGAGTTGGTTT+AGG + chr1_2:53437877-53437896 Msa0076990:CDS 35.0%
AAGTCATACATGTCTCTTCA+CGG - chr1_2:53437941-53437960 None:intergenic 35.0%
TTGCTTGATGAGGAGTAAAA+TGG + chr1_2:53438119-53438138 Msa0076990:intron 35.0%
!! ATATCAGATAGTTCTGGTTC+TGG - chr1_2:53438237-53438256 None:intergenic 35.0%
AGCTCTCCACAGAATAAAAA+TGG + chr1_2:53438521-53438540 Msa0076990:intron 35.0%
AATGGTTGAAAGCTTGACTT+TGG + chr1_2:53438544-53438563 Msa0076990:intron 35.0%
ATGGTTGAAAGCTTGACTTT+GGG + chr1_2:53438545-53438564 Msa0076990:intron 35.0%
TGGAGTCTCGACATAATAAT+GGG + chr1_2:53438586-53438605 Msa0076990:intron 35.0%
TAGATCAGATATATGTGGTG+TGG - chr1_2:53438673-53438692 None:intergenic 35.0%
AAATTGCCAACTTATTCACC+AGG + chr1_2:53438850-53438869 Msa0076990:intron 35.0%
ATTTAGCCTGGTGAATAAGT+TGG - chr1_2:53438859-53438878 None:intergenic 35.0%
CTGAATCATAAAGTTCCATC+TGG - chr1_2:53438885-53438904 None:intergenic 35.0%
CAGATGGAACTTTATGATTC+AGG + chr1_2:53438883-53438902 Msa0076990:intron 35.0%
!! GGCTCTAAAAATCTAGTGAA+GGG - chr1_2:53439035-53439054 None:intergenic 35.0%
!! AGGCTCTAAAAATCTAGTGA+AGG - chr1_2:53439036-53439055 None:intergenic 35.0%
TGAGAAGTTCAGAAGTTTGA+GGG + chr1_2:53439055-53439074 Msa0076990:CDS 35.0%
! AAATTTTGTTGAAGGCAGTC+TGG + chr1_2:53439167-53439186 Msa0076990:intron 35.0%
TGAAATGACAACAAGTCCAT+CGG - chr1_2:53439258-53439277 None:intergenic 35.0%
TTCTGTGCTCATATCATCAA+TGG - chr1_2:53439339-53439358 None:intergenic 35.0%
TGATATGAGCACAGAAAAGT+TGG + chr1_2:53439343-53439362 Msa0076990:CDS 35.0%
GATATGAGCACAGAAAAGTT+GGG + chr1_2:53439344-53439363 Msa0076990:CDS 35.0%
!! TATTGATTCGAAAGCACAAG+TGG - chr1_2:53439421-53439440 None:intergenic 35.0%
ACTGTAAAGTTGCATACAAC+TGG + chr1_2:53439619-53439638 Msa0076990:intron 35.0%
ATACGTGGAGAAATAGTTAG+AGG + chr1_2:53439782-53439801 Msa0076990:intron 35.0%
GGAGAAATAGTTAGAGGAAA+AGG + chr1_2:53439788-53439807 Msa0076990:intron 35.0%
! ATTCGGCCTATAGTTTTCTA+TGG - chr1_2:53439818-53439837 None:intergenic 35.0%
GGCACAATAATACTTTGTCT+TGG - chr1_2:53439887-53439906 None:intergenic 35.0%
AATGGCTCATACTAGAGTAA+CGG - chr1_2:53440006-53440025 None:intergenic 35.0%
TCTAGTATGAGCCATTTATG+AGG + chr1_2:53440010-53440029 Msa0076990:intron 35.0%
! GTAATTTCCTTTAGAAGGTC+AGG - chr1_2:53440131-53440150 None:intergenic 35.0%
CCTCTGTAATTTCCTTTAGA+AGG - chr1_2:53440136-53440155 None:intergenic 35.0%
! CCTTCTAAAGGAAATTACAG+AGG + chr1_2:53440133-53440152 Msa0076990:intron 35.0%
! GAGAATATGCTTTGTTACCT+AGG + chr1_2:53440272-53440291 Msa0076990:intron 35.0%
GACTAAATCAGCAGAGTTAA+CGG - chr1_2:53440373-53440392 None:intergenic 35.0%
TAATTAGGCCTCTCAAGTAA+TGG - chr1_2:53440409-53440428 None:intergenic 35.0%
! ACAACTTACGAGATGCATTT+TGG - chr1_2:53440643-53440662 None:intergenic 35.0%
ATCTCGTAAGTTGTGATTGA+TGG + chr1_2:53440649-53440668 Msa0076990:intron 35.0%
TCTCGTAAGTTGTGATTGAT+GGG + chr1_2:53440650-53440669 Msa0076990:intron 35.0%
AGCAAGTAAGAATTATGGCT+TGG - chr1_2:53440782-53440801 None:intergenic 35.0%
TCAAACTTCATATGGTCATC+GGG - chr1_2:53440842-53440861 None:intergenic 35.0%
GTCAAACTTCATATGGTCAT+CGG - chr1_2:53440843-53440862 None:intergenic 35.0%
ATACTTAGTGTGGATGTATC+TGG - chr1_2:53440949-53440968 None:intergenic 35.0%
AAAGAGAAACAATCCCAACA+AGG - chr1_2:53440998-53441017 None:intergenic 35.0%
GATTGATGCTTAATGGAGAT+GGG + chr1_2:53441253-53441272 Msa0076990:intron 35.0%
CTTAATGGAGATGGGAATTT+GGG + chr1_2:53441261-53441280 Msa0076990:intron 35.0%
ATACTTCTTTATGAACCTCG+TGG + chr1_2:53441334-53441353 Msa0076990:intron 35.0%
GAACCTCGTGGTATTAAATT+CGG + chr1_2:53441346-53441365 Msa0076990:intron 35.0%
AAGAAGCAATCAATACGTTC+AGG + chr1_2:53441517-53441536 Msa0076990:CDS 35.0%
! TTTTGGACCTCAGAGATAAT+AGG + chr1_2:53441562-53441581 Msa0076990:CDS 35.0%
! GAAGCTTATATTTGTTGCAG+TGG + chr1_2:53441636-53441655 Msa0076990:intron 35.0%
AGACATATCTTACCAAAGCT+TGG - chr1_2:53441691-53441710 None:intergenic 35.0%
CAGCCAAAATTGATATGCAA+TGG - chr1_2:53441738-53441757 None:intergenic 35.0%
!! CATTGCATATCAATTTTGGC+TGG + chr1_2:53441736-53441755 Msa0076990:intron 35.0%
! ACCAGTATTCTCACCTTTTA+TGG + chr1_2:53441835-53441854 Msa0076990:intron 35.0%
TCCATAAAAGGTGAGAATAC+TGG - chr1_2:53441839-53441858 None:intergenic 35.0%
TAGCACTTGTGATCCATAAA+AGG - chr1_2:53441851-53441870 None:intergenic 35.0%
!! AAAAGGTGTTTCTGACTGTA+TGG - chr1_2:53441875-53441894 None:intergenic 35.0%
TATCTGTTAGAACTTGAAGC+TGG - chr1_2:53442022-53442041 None:intergenic 35.0%
!! CTATCAATTAGGTTGGACAA+AGG + chr1_2:53442042-53442061 Msa0076990:intron 35.0%
GTGTATATTTGTGATAGTCG+TGG + chr1_2:53442072-53442091 Msa0076990:CDS 35.0%
GTATATTTGTGATAGTCGTG+GGG + chr1_2:53442074-53442093 Msa0076990:CDS 35.0%
!! ATTGGTGTCATATATCGTGT+CGG + chr1_2:53442196-53442215 Msa0076990:intron 35.0%
! CTAGTTGGTTTCGCAAAAAT+AGG + chr1_2:53442280-53442299 Msa0076990:intron 35.0%
TTCGCAAAAATAGGATTTGC+AGG + chr1_2:53442289-53442308 Msa0076990:intron 35.0%
CATTGAGGGATACTTGTATT+GGG + chr1_2:53442321-53442340 Msa0076990:intron 35.0%
AGAATCGCAAACTCTGTATT+GGG + chr1_2:53442370-53442389 Msa0076990:intron 35.0%
GGGTAGATAATAGATATGTG+GGG + chr1_2:53442390-53442409 Msa0076990:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG + chr1_2:53442414-53442433 Msa0076990:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG + chr1_2:53442415-53442434 Msa0076990:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG + chr1_2:53442414-53442433 Msa0076990:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG + chr1_2:53442415-53442434 Msa0076990:intron 35.0%
TTGCAACATCTCAACTATTG+AGG - chr1_2:53442720-53442739 None:intergenic 35.0%
AGTAGTTTCACTTACATCAC+AGG - chr1_2:53442774-53442793 None:intergenic 35.0%
! CTTGTTATCTTTCAATGCAC+CGG - chr1_2:53443124-53443143 None:intergenic 35.0%
GTGCATTGAAAGATAACAAG+CGG + chr1_2:53443124-53443143 Msa0076990:CDS 35.0%
TGCATTGAAAGATAACAAGC+GGG + chr1_2:53443125-53443144 Msa0076990:CDS 35.0%
CAAGATGTGTAGCTCATATT+AGG - chr1_2:53443239-53443258 None:intergenic 35.0%
! CAAATGCAAGGTGTTAAAAG+GGG - chr1_2:53443412-53443431 None:intergenic 35.0%
! CCAAATGCAAGGTGTTAAAA+GGG - chr1_2:53443413-53443432 None:intergenic 35.0%
! TCCAAATGCAAGGTGTTAAA+AGG - chr1_2:53443414-53443433 None:intergenic 35.0%
! TTAGGAAATGATGTTGGTAG+AGG - chr1_2:53443463-53443482 None:intergenic 35.0%
TCTACCAACATCATTTCCTA+AGG + chr1_2:53443462-53443481 Msa0076990:CDS 35.0%
TCATCCTTAGGAAATGATGT+TGG - chr1_2:53443469-53443488 None:intergenic 35.0%
CAAAATGCATCTTCATCCTT+AGG - chr1_2:53443481-53443500 None:intergenic 35.0%
TCCCGAAAATTGAACTAACT+AGG + chr1_2:53443708-53443727 Msa0076990:three_prime_UTR 35.0%
TTCTGGCAGGTTTATTTGTT+TGG - chr1_2:53443744-53443763 None:intergenic 35.0%
AACAAATAAACCTGCCAGAA+TGG + chr1_2:53443744-53443763 Msa0076990:three_prime_UTR 35.0%
ACAAATAAACCTGCCAGAAT+GGG + chr1_2:53443745-53443764 Msa0076990:three_prime_UTR 35.0%
ACAAGATAGTGAGTGGTTTG+AGG + chr1_2:53436456-53436475 Msa0076990:five_prime_UTR 40.0%
AGATTGTTGGGTAACGAAGA+GGG - chr1_2:53436551-53436570 None:intergenic 40.0%
CCTGAAAAACGGAGATTGTT+GGG - chr1_2:53436563-53436582 None:intergenic 40.0%
ACCTGAAAAACGGAGATTGT+TGG - chr1_2:53436564-53436583 None:intergenic 40.0%
TGAGAAGGGAACCTGAAAAA+CGG - chr1_2:53436574-53436593 None:intergenic 40.0%
GAAGAAGGGGAAATTGAGAA+GGG - chr1_2:53436588-53436607 None:intergenic 40.0%
TGAAGAAGGGGAAATTGAGA+AGG - chr1_2:53436589-53436608 None:intergenic 40.0%
TTATGCTGCAGGTTTCAAAC+TGG + chr1_2:53436644-53436663 Msa0076990:intron 40.0%
TTCTTTACTGTTTGTGCGGT+TGG + chr1_2:53436843-53436862 Msa0076990:CDS 40.0%
! TGGAGTTATGTTGGTTGTGT+CGG + chr1_2:53436870-53436889 Msa0076990:CDS 40.0%
! GGAATTTGGGTTAGATTACG+TGG + chr1_2:53436968-53436987 Msa0076990:intron 40.0%
GTCTGTGTAAGTGTTATGTC+CGG + chr1_2:53437057-53437076 Msa0076990:intron 40.0%
CACTGGACCTTATCTACAAT+GGG - chr1_2:53437446-53437465 None:intergenic 40.0%
!! GTTGAGGTTGTTGACTTTAG+AGG + chr1_2:53437664-53437683 Msa0076990:intron 40.0%
TGTTTCATGCTTGCTTGATG+AGG + chr1_2:53438109-53438128 Msa0076990:intron 40.0%
! GTTGGTTTCAGATAGAAGTG+TGG + chr1_2:53438312-53438331 Msa0076990:intron 40.0%
AGAGTCAAGAGGACAGAAAA+AGG - chr1_2:53438397-53438416 None:intergenic 40.0%
! TTTTCTGTCCTCTTGACTCT+TGG + chr1_2:53438397-53438416 Msa0076990:intron 40.0%
CATGATAACATCTTCATGGG+TGG + chr1_2:53438424-53438443 Msa0076990:intron 40.0%
!!! ATGGGTGGTGGTTTTAAACA+TGG + chr1_2:53438439-53438458 Msa0076990:intron 40.0%
CTGGAGTCTCGACATAATAA+TGG + chr1_2:53438585-53438604 Msa0076990:intron 40.0%
ATAAATCAGCGAGAATGACC+TGG + chr1_2:53438718-53438737 Msa0076990:intron 40.0%
TAAATCAGCGAGAATGACCT+GGG + chr1_2:53438719-53438738 Msa0076990:intron 40.0%
AATCATTCTTCAATCTGCCC+AGG - chr1_2:53438739-53438758 None:intergenic 40.0%
GCTGCATTTGTTCTCAGATA+TGG + chr1_2:53438977-53438996 Msa0076990:intron 40.0%
AAGAAAGATGCTTGCCACAT+TGG + chr1_2:53439004-53439023 Msa0076990:CDS 40.0%
CTCAAACTTCTGAACTTCTC+AGG - chr1_2:53439056-53439075 None:intergenic 40.0%
CTGAGAAGTTCAGAAGTTTG+AGG + chr1_2:53439054-53439073 Msa0076990:CDS 40.0%
CCAATATGCATTACACAGTC+AGG - chr1_2:53439131-53439150 None:intergenic 40.0%
CCTGACTGTGTAATGCATAT+TGG + chr1_2:53439128-53439147 Msa0076990:intron 40.0%
AAAACACCAGCTCTATATGC+AGG - chr1_2:53439296-53439315 None:intergenic 40.0%
! TATAGAGCTGGTGTTTTGTC+TGG + chr1_2:53439299-53439318 Msa0076990:CDS 40.0%
TTTGTCTGGAGATGTTATCC+TGG + chr1_2:53439313-53439332 Msa0076990:CDS 40.0%
GATGAAGAAAAACCCACTGT+AGG - chr1_2:53439391-53439410 None:intergenic 40.0%
! TCAGTTGGTTCAAACATACG+TGG + chr1_2:53439767-53439786 Msa0076990:intron 40.0%
GGGAGACCATAGAAAACTAT+AGG + chr1_2:53439809-53439828 Msa0076990:intron 40.0%
! TATCAAAGTGTTCTTCCACC+AGG - chr1_2:53439934-53439953 None:intergenic 40.0%
TTGATTGCCTGACCTTCTAA+AGG + chr1_2:53440121-53440140 Msa0076990:intron 40.0%
TACCAACTTACGTTAGAGCT+AGG - chr1_2:53440213-53440232 None:intergenic 40.0%
! GCAAGTTTTTGCATCATCCT+AGG - chr1_2:53440292-53440311 None:intergenic 40.0%
TAAATCAGCAGAGTTAACGG+TGG - chr1_2:53440370-53440389 None:intergenic 40.0%
GGAAATAATTCCCCAACAGT+TGG + chr1_2:53440593-53440612 Msa0076990:CDS 40.0%
GAAGCAAGAAAAGTTCTGCT+TGG - chr1_2:53440676-53440695 None:intergenic 40.0%
! GAATTATGGCTTGGAGTACT+AGG - chr1_2:53440773-53440792 None:intergenic 40.0%
!! TTTTTCGATGTCTAGGGTTG+TGG + chr1_2:53441163-53441182 Msa0076990:intron 40.0%
GGATTGATGCTTAATGGAGA+TGG + chr1_2:53441252-53441271 Msa0076990:intron 40.0%
GCTTAATGGAGATGGGAATT+TGG + chr1_2:53441260-53441279 Msa0076990:intron 40.0%
TGACCGAATTTAATACCACG+AGG - chr1_2:53441352-53441371 None:intergenic 40.0%
! GCTTATATTTGTTGCAGTGG+TGG + chr1_2:53441639-53441658 Msa0076990:intron 40.0%
TGGCAATCTCAATTCCTTCT+GGG - chr1_2:53441671-53441690 None:intergenic 40.0%
TTGGCAATCTCAATTCCTTC+TGG - chr1_2:53441672-53441691 None:intergenic 40.0%
GAATTGAGATTGCCAAGCTT+TGG + chr1_2:53441676-53441695 Msa0076990:intron 40.0%
!!! TGCATATCAATTTTGGCTGG+TGG + chr1_2:53441739-53441758 Msa0076990:intron 40.0%
!!! GCATATCAATTTTGGCTGGT+GGG + chr1_2:53441740-53441759 Msa0076990:intron 40.0%
AAAAGGTGAGAATACTGGTG+TGG - chr1_2:53441834-53441853 None:intergenic 40.0%
! TGACTGGAGGAGTTCATTTT+TGG - chr1_2:53441957-53441976 None:intergenic 40.0%
CGAGATATACTGGATACAGA+TGG + chr1_2:53442099-53442118 Msa0076990:CDS 40.0%
TATGACACCAATGCAATGAG+AGG - chr1_2:53442188-53442207 None:intergenic 40.0%
!! TTGGTGTCATATATCGTGTC+GGG + chr1_2:53442197-53442216 Msa0076990:intron 40.0%
GCATTGAGGGATACTTGTAT+TGG + chr1_2:53442320-53442339 Msa0076990:intron 40.0%
AGGGATACTTGTATTGGGTT+TGG + chr1_2:53442326-53442345 Msa0076990:intron 40.0%
GGGATACTTGTATTGGGTTT+GGG + chr1_2:53442327-53442346 Msa0076990:intron 40.0%
GAGAATCGCAAACTCTGTAT+TGG + chr1_2:53442369-53442388 Msa0076990:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG + chr1_2:53442408-53442427 Msa0076990:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG + chr1_2:53442409-53442428 Msa0076990:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG + chr1_2:53442416-53442435 Msa0076990:intron 40.0%
!! AAGAGTTCTATTGACTCCTG+TGG + chr1_2:53442444-53442463 Msa0076990:intron 40.0%
!! AGAGTTCTATTGACTCCTGT+GGG + chr1_2:53442445-53442464 Msa0076990:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG + chr1_2:53442408-53442427 Msa0076990:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG + chr1_2:53442409-53442428 Msa0076990:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG + chr1_2:53442416-53442435 Msa0076990:intron 40.0%
TGTTTACCAGACACACCTTT+CGG + chr1_2:53442871-53442890 Msa0076990:intron 40.0%
TTGACAAATTGGAACTCGGA+AGG - chr1_2:53443020-53443039 None:intergenic 40.0%
TGAGCCTAATCAGGTAAACA+AGG + chr1_2:53443071-53443090 Msa0076990:intron 40.0%
GAGCCTAATCAGGTAAACAA+GGG + chr1_2:53443072-53443091 Msa0076990:intron 40.0%
! GTTCCCTTGTTTACCTGATT+AGG - chr1_2:53443078-53443097 None:intergenic 40.0%
GAGAGCCAACATTTGGAAAA+GGG + chr1_2:53443160-53443179 Msa0076990:CDS 40.0%
ATATGAGCTACACATCTTGC+AGG + chr1_2:53443240-53443259 Msa0076990:intron 40.0%
CTGAGAGCTCAAATACTGAT+TGG - chr1_2:53443271-53443290 None:intergenic 40.0%
TCAGTATTTGAGCTCTCAGA+TGG + chr1_2:53443272-53443291 Msa0076990:CDS 40.0%
! CCCTTTTAACACCTTGCATT+TGG + chr1_2:53443410-53443429 Msa0076990:intron 40.0%
AACACCTTGCATTTGGATGT+AGG + chr1_2:53443417-53443436 Msa0076990:intron 40.0%
! GAAATGATGTTGGTAGAGGA+TGG - chr1_2:53443459-53443478 None:intergenic 40.0%
CATATGTATCCAGAGGTTTG+TGG - chr1_2:53443660-53443679 None:intergenic 40.0%
!! AGTTCAATTTTCGGGAACAC+AGG - chr1_2:53443704-53443723 None:intergenic 40.0%
TGATCTCCATGGAAGAGTGA+AGG - chr1_2:53436500-53436519 None:intergenic 45.0%
AGAGCTAGCAATGATCTCCA+TGG - chr1_2:53436511-53436530 None:intergenic 45.0%
GAGATTGTTGGGTAACGAAG+AGG - chr1_2:53436552-53436571 None:intergenic 45.0%
!! CCCAACAATCTCCGTTTTTC+AGG + chr1_2:53436560-53436579 Msa0076990:CDS 45.0%
CGAAGGAAACTCCAACTTTG+AGG - chr1_2:53436781-53436800 None:intergenic 45.0%
CAGAAGGAGGAAATGGAACA+AGG + chr1_2:53436801-53436820 Msa0076990:CDS 45.0%
GTTGGTTGCTGGAGTTATGT+TGG + chr1_2:53436861-53436880 Msa0076990:CDS 45.0%
! GCACTGACACTTCAAATCGA+AGG + chr1_2:53436990-53437009 Msa0076990:intron 45.0%
GTGAGTGTCAAGGTGAATGT+TGG - chr1_2:53437311-53437330 None:intergenic 45.0%
TTGACACTCACTCACTCGAT+GGG + chr1_2:53437320-53437339 Msa0076990:intron 45.0%
CAATGGGAGAAGTAGTGCTA+GGG - chr1_2:53437430-53437449 None:intergenic 45.0%
ACAATGGGAGAAGTAGTGCT+AGG - chr1_2:53437431-53437450 None:intergenic 45.0%
GCACTGGACCTTATCTACAA+TGG - chr1_2:53437447-53437466 None:intergenic 45.0%
GGAAGAGAATCTCCTCTTTC+TGG + chr1_2:53437812-53437831 Msa0076990:CDS 45.0%
AGAGAATCTCCTCTTTCTGG+AGG + chr1_2:53437815-53437834 Msa0076990:CDS 45.0%
GTCTCTTCACGGTTGTTCAT+GGG - chr1_2:53437930-53437949 None:intergenic 45.0%
TGTCTCTTCACGGTTGTTCA+TGG - chr1_2:53437931-53437950 None:intergenic 45.0%
! TGATTGCCTTCTAGGGATTG+AGG + chr1_2:53438054-53438073 Msa0076990:intron 45.0%
CATGCATACCAAGAGTCAAG+AGG - chr1_2:53438408-53438427 None:intergenic 45.0%
GATAACATCTTCATGGGTGG+TGG + chr1_2:53438427-53438446 Msa0076990:intron 45.0%
!! GCTTGACTTTGGGTTGTCAT+CGG + chr1_2:53438555-53438574 Msa0076990:intron 45.0%
ACCAGGCTAAATTGTCCAGA+TGG + chr1_2:53438867-53438886 Msa0076990:intron 45.0%
TCCATCTGGACAATTTAGCC+TGG - chr1_2:53438871-53438890 None:intergenic 45.0%
AGTGAAGGGATCATCCAATG+TGG - chr1_2:53439021-53439040 None:intergenic 45.0%
! TGAAGGCAGTCTGGAACTAA+AGG + chr1_2:53439176-53439195 Msa0076990:intron 45.0%
ACTGGAGTGGGGATATCAAT+AGG + chr1_2:53439206-53439225 Msa0076990:CDS 45.0%
ATGGCATGTCTGCTTTGGTA+GGG - chr1_2:53439235-53439254 None:intergenic 45.0%
ATGACAACAAGTCCATCGGA+TGG - chr1_2:53439254-53439273 None:intergenic 45.0%
! GTTGTCATTTCAGCTTCTCC+AGG + chr1_2:53439266-53439285 Msa0076990:CDS 45.0%
TGCTCATATCATCAATGGCC+AGG - chr1_2:53439334-53439353 None:intergenic 45.0%
GGAAATTACAGAGGACCTGA+TGG + chr1_2:53440142-53440161 Msa0076990:intron 45.0%
AATGCAACAGAGCTTCCATC+AGG - chr1_2:53440160-53440179 None:intergenic 45.0%
! GTTGCATTGACCATACGTAG+TGG + chr1_2:53440172-53440191 Msa0076990:CDS 45.0%
TACGTCAGAACCACTACGTA+TGG - chr1_2:53440185-53440204 None:intergenic 45.0%
!! CACCTAGCTCTAACGTAAGT+TGG + chr1_2:53440208-53440227 Msa0076990:intron 45.0%
TTGCACAGTCTTGACTTCAC+TGG - chr1_2:53440560-53440579 None:intergenic 45.0%
GAAACAATCCCAACAAGGCA+GGG - chr1_2:53440993-53441012 None:intergenic 45.0%
AGAAACAATCCCAACAAGGC+AGG - chr1_2:53440994-53441013 None:intergenic 45.0%
CCTGCAAGGATGACAGATTA+CGG - chr1_2:53441489-53441508 None:intergenic 45.0%
! CTTCTTTGATAGCACCTGCA+AGG - chr1_2:53441503-53441522 None:intergenic 45.0%
CAGAGGTTCAGAAGTTGCTA+GGG - chr1_2:53442133-53442152 None:intergenic 45.0%
AAAATTACCAGCACAGCCAG+AGG - chr1_2:53442150-53442169 None:intergenic 45.0%
GCTTTCTCCTCTCATTGCAT+TGG + chr1_2:53442178-53442197 Msa0076990:intron 45.0%
!! GAGTTCTATTGACTCCTGTG+GGG + chr1_2:53442446-53442465 Msa0076990:intron 45.0%
TAACTGCTTACTATCCCCAC+AGG - chr1_2:53442407-53442426 None:intergenic 45.0%
AGTGCCAGCGAAATATTAGC+CGG + chr1_2:53443102-53443121 Msa0076990:CDS 45.0%
AACAAGCGGGCCATATTGTA+CGG + chr1_2:53443138-53443157 Msa0076990:CDS 45.0%
!! TGTTGGCTCTCCGTACAATA+TGG - chr1_2:53443151-53443170 None:intergenic 45.0%
TTGTACGGAGAGCCAACATT+TGG + chr1_2:53443153-53443172 Msa0076990:CDS 45.0%
GGAGAGCCAACATTTGGAAA+AGG + chr1_2:53443159-53443178 Msa0076990:CDS 45.0%
TTGTCAATATCTGTGTGCGC+AGG - chr1_2:53443335-53443354 None:intergenic 45.0%
TGCGCACACAGATATTGACA+AGG + chr1_2:53443334-53443353 Msa0076990:CDS 45.0%
CCAACCTACATCCAAATGCA+AGG - chr1_2:53443424-53443443 None:intergenic 45.0%
CCTTGCATTTGGATGTAGGT+TGG + chr1_2:53443421-53443440 Msa0076990:intron 45.0%
! TGCATTTTGCAATTGCCTGC+AGG + chr1_2:53443492-53443511 Msa0076990:CDS 45.0%
ACAATGTTGCCACAAACCTC+TGG + chr1_2:53443648-53443667 Msa0076990:three_prime_UTR 45.0%
!!! TTTTAAAAAAAAAAAAAAAC+TGG - chr1_2:53443375-53443394 None:intergenic 5.0%
! TAGTGAGTGGTTTGAGGCAG+AGG + chr1_2:53436462-53436481 Msa0076990:five_prime_UTR 50.0%
GTTCTGCCTTCACTCTTCCA+TGG + chr1_2:53436491-53436510 Msa0076990:exon 50.0%
GGGTAACGAAGAGGGAAAGA+AGG - chr1_2:53436543-53436562 None:intergenic 50.0%
GTTGGAGTTTCCTTCGCAGA+AGG + chr1_2:53436785-53436804 Msa0076990:intron 50.0%
TCCTTCGCAGAAGGAGGAAA+TGG + chr1_2:53436794-53436813 Msa0076990:CDS 50.0%
TCCATTTCCTCCTTCTGCGA+AGG - chr1_2:53436798-53436817 None:intergenic 50.0%
CATCGAGTGAGTGAGTGTCA+AGG - chr1_2:53437321-53437340 None:intergenic 50.0%
CTTGACACTCACTCACTCGA+TGG + chr1_2:53437319-53437338 Msa0076990:intron 50.0%
GAGGAGATTCTCTTCCGTCA+GGG - chr1_2:53437808-53437827 None:intergenic 50.0%
AGAGGAGATTCTCTTCCGTC+AGG - chr1_2:53437809-53437828 None:intergenic 50.0%
TCCACTCCTCAATCCCTAGA+AGG - chr1_2:53438063-53438082 None:intergenic 50.0%
GGTTGTCATCGGTGATTGTC+TGG + chr1_2:53438566-53438585 Msa0076990:intron 50.0%
!! GGAACTAAAGGCGCTCTAAC+TGG + chr1_2:53439188-53439207 Msa0076990:CDS 50.0%
!! TAAAGGCGCTCTAACTGGAG+TGG + chr1_2:53439193-53439212 Msa0076990:CDS 50.0%
!! AAAGGCGCTCTAACTGGAGT+GGG + chr1_2:53439194-53439213 Msa0076990:CDS 50.0%
GATGGCATGTCTGCTTTGGT+AGG - chr1_2:53439236-53439255 None:intergenic 50.0%
ATCGGATGGCATGTCTGCTT+TGG - chr1_2:53439240-53439259 None:intergenic 50.0%
AAAGCAGACATGCCATCCGA+TGG + chr1_2:53439239-53439258 Msa0076990:CDS 50.0%
GTCATTTCAGCTTCTCCAGG+AGG + chr1_2:53439269-53439288 Msa0076990:CDS 50.0%
! CGAAAGCACAAGTGGCATGT+AGG - chr1_2:53439413-53439432 None:intergenic 50.0%
AGGTAGAGTCTCGTCTCAGT+TGG + chr1_2:53439752-53439771 Msa0076990:intron 50.0%
TCCATGTAGTCAATACCGCC+TGG + chr1_2:53439913-53439932 Msa0076990:intron 50.0%
!! ACCAGGCGGTATTGACTACA+TGG - chr1_2:53439917-53439936 None:intergenic 50.0%
ATGTAGTCAATACCGCCTGG+TGG + chr1_2:53439916-53439935 Msa0076990:intron 50.0%
! CAAAGTGTTCTTCCACCAGG+CGG - chr1_2:53439931-53439950 None:intergenic 50.0%
GGGGAATTATTTCCTGCAGC+AGG - chr1_2:53440587-53440606 None:intergenic 50.0%
AGCGCGCTCAATACTTAGTG+TGG - chr1_2:53440959-53440978 None:intergenic 50.0%
ACATGACTTCCCTGCCTTGT+TGG + chr1_2:53440981-53441000 Msa0076990:intron 50.0%
! CATGACTTCCCTGCCTTGTT+GGG + chr1_2:53440982-53441001 Msa0076990:intron 50.0%
AGGAACCTGCTTACTGCAGA+CGG + chr1_2:53441024-53441043 Msa0076990:intron 50.0%
CTTACTGCAGACGGGCATTT+GGG + chr1_2:53441033-53441052 Msa0076990:intron 50.0%
! TTCGATGTCTAGGGTTGTGG+TGG + chr1_2:53441166-53441185 Msa0076990:intron 50.0%
CCGTAATCTGTCATCCTTGC+AGG + chr1_2:53441486-53441505 Msa0076990:intron 50.0%
! AGTGGTGGTCTTTTCCCAGA+AGG + chr1_2:53441654-53441673 Msa0076990:intron 50.0%
TCGTGGGGTTCGAGATATAC+TGG + chr1_2:53442089-53442108 Msa0076990:CDS 50.0%
CCAGAGGTTCAGAAGTTGCT+AGG - chr1_2:53442134-53442153 None:intergenic 50.0%
CCTAGCAACTTCTGAACCTC+TGG + chr1_2:53442131-53442150 Msa0076990:CDS 50.0%
TGCAGGACATGCATGCATTG+AGG + chr1_2:53442306-53442325 Msa0076990:intron 50.0%
GCAGGACATGCATGCATTGA+GGG + chr1_2:53442307-53442326 Msa0076990:intron 50.0%
TTGGGTTTGGGCAGTTCGTA+CGG + chr1_2:53442339-53442358 Msa0076990:intron 50.0%
GTTATCTACGGTACCGCTGT+GGG - chr1_2:53442532-53442551 None:intergenic 50.0%
TGTTATCTACGGTACCGCTG+TGG - chr1_2:53442533-53442552 None:intergenic 50.0%
TGCAGTCCAGCAAAAACTCG+AGG + chr1_2:53442843-53442862 Msa0076990:intron 50.0%
GCAGTCCAGCAAAAACTCGA+GGG + chr1_2:53442844-53442863 Msa0076990:intron 50.0%
! AACCACCCTCGAGTTTTTGC+TGG - chr1_2:53442852-53442871 None:intergenic 50.0%
GATTCATGGACCTGACCGAA+AGG - chr1_2:53442889-53442908 None:intergenic 50.0%
!! TGCACCGGCTAATATTTCGC+TGG - chr1_2:53443109-53443128 None:intergenic 50.0%
TTTGAGCTCTCAGATGGCTC+AGG + chr1_2:53443278-53443297 Msa0076990:CDS 50.0%
! GATGTTGGTAGAGGATGGTC+AGG - chr1_2:53443454-53443473 None:intergenic 50.0%
! TGAGTGGTTTGAGGCAGAGG+TGG + chr1_2:53436465-53436484 Msa0076990:five_prime_UTR 55.0%
! TGGTTTGAGGCAGAGGTGGT+AGG + chr1_2:53436469-53436488 Msa0076990:five_prime_UTR 55.0%
GGAGTTTCCTTCGCAGAAGG+AGG + chr1_2:53436788-53436807 Msa0076990:CDS 55.0%
! CTGTTTGTGCGGTTGGTTGC+TGG + chr1_2:53436850-53436869 Msa0076990:CDS 55.0%
ACACTCACTCACTCGATGGG+TGG + chr1_2:53437323-53437342 Msa0076990:intron 55.0%
! ATCTCCTCTTTCTGGAGGCG+TGG + chr1_2:53437820-53437839 Msa0076990:CDS 55.0%
TTCTCCACGCCTCCAGAAAG+AGG - chr1_2:53437827-53437846 None:intergenic 55.0%
! GCCTTCTAGGGATTGAGGAG+TGG + chr1_2:53438059-53438078 Msa0076990:intron 55.0%
! AAGGCGCTCTAACTGGAGTG+GGG + chr1_2:53439195-53439214 Msa0076990:CDS 55.0%
GCTCTATATGCAGGACCTCC+TGG - chr1_2:53439287-53439306 None:intergenic 55.0%
GGAGGTCCTGCATATAGAGC+TGG + chr1_2:53439287-53439306 Msa0076990:CDS 55.0%
ATGCAGCTGAACGCCTACAG+TGG + chr1_2:53439375-53439394 Msa0076990:intron 55.0%
TGCAGCTGAACGCCTACAGT+GGG + chr1_2:53439376-53439395 Msa0076990:intron 55.0%
CTGTGCAAGTTACCTGCTGC+AGG + chr1_2:53440572-53440591 Msa0076990:CDS 55.0%
GGAACCTGCTTACTGCAGAC+GGG + chr1_2:53441025-53441044 Msa0076990:intron 55.0%
AATGCCCGTCTGCAGTAAGC+AGG - chr1_2:53441032-53441051 None:intergenic 55.0%
GCTTACTGCAGACGGGCATT+TGG + chr1_2:53441032-53441051 Msa0076990:intron 55.0%
TTCTGAACCTCTGGCTGTGC+TGG + chr1_2:53442140-53442159 Msa0076990:CDS 55.0%
TGGGTTTGGGCAGTTCGTAC+GGG + chr1_2:53442340-53442359 Msa0076990:intron 55.0%
CCTTTCCTGTGATCCCACAG+CGG + chr1_2:53442516-53442535 Msa0076990:intron 55.0%
GTCCAGCAAAAACTCGAGGG+TGG + chr1_2:53442847-53442866 Msa0076990:intron 55.0%
ACCAGACACACCTTTCGGTC+AGG + chr1_2:53442876-53442895 Msa0076990:intron 55.0%
! ACCTGACCGAAAGGTGTGTC+TGG - chr1_2:53442880-53442899 None:intergenic 55.0%
ACGAAGAAGCAGGATCCTGC+AGG - chr1_2:53443510-53443529 None:intergenic 55.0%
TTCCGTCAGGGCCCCTTCAA+GGG - chr1_2:53437796-53437815 None:intergenic 60.0%
CCGCTGTGGGATCACAGGAA+AGG - chr1_2:53442519-53442538 None:intergenic 60.0%
GTCCCTTGAAGGGGCCCTGA+CGG + chr1_2:53437791-53437810 Msa0076990:intron 65.0%
CTTCCGTCAGGGCCCCTTCA+AGG - chr1_2:53437797-53437816 None:intergenic 65.0%
CGGTACCGCTGTGGGATCAC+AGG - chr1_2:53442524-53442543 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 53436385 53443768 53436385 ID=Msa0076990;Name=Msa0076990
chr1_2 mRNA 53436385 53443768 53436385 ID=Msa0076990-mRNA-1;Parent=Msa0076990;Name=Msa0076990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=125|0.75|0.84|1|0.83|0.76|13|198|476
chr1_2 exon 53436385 53436581 53436385 ID=Msa0076990-mRNA-1:exon:16536;Parent=Msa0076990-mRNA-1
chr1_2 exon 53436655 53436768 53436655 ID=Msa0076990-mRNA-1:exon:16537;Parent=Msa0076990-mRNA-1
chr1_2 exon 53436786 53436891 53436786 ID=Msa0076990-mRNA-1:exon:16538;Parent=Msa0076990-mRNA-1
chr1_2 exon 53437802 53437951 53437802 ID=Msa0076990-mRNA-1:exon:16539;Parent=Msa0076990-mRNA-1
chr1_2 exon 53438994 53439076 53438994 ID=Msa0076990-mRNA-1:exon:16540;Parent=Msa0076990-mRNA-1
chr1_2 exon 53439185 53439393 53439185 ID=Msa0076990-mRNA-1:exon:16541;Parent=Msa0076990-mRNA-1
chr1_2 exon 53440153 53440221 53440153 ID=Msa0076990-mRNA-1:exon:16542;Parent=Msa0076990-mRNA-1
chr1_2 exon 53440535 53440653 53440535 ID=Msa0076990-mRNA-1:exon:16543;Parent=Msa0076990-mRNA-1
chr1_2 exon 53441508 53441583 53441508 ID=Msa0076990-mRNA-1:exon:16544;Parent=Msa0076990-mRNA-1
chr1_2 exon 53442053 53442161 53442053 ID=Msa0076990-mRNA-1:exon:16545;Parent=Msa0076990-mRNA-1
chr1_2 exon 53443084 53443181 53443084 ID=Msa0076990-mRNA-1:exon:16546;Parent=Msa0076990-mRNA-1
chr1_2 exon 53443262 53443355 53443262 ID=Msa0076990-mRNA-1:exon:16547;Parent=Msa0076990-mRNA-1
chr1_2 exon 53443439 53443768 53443439 ID=Msa0076990-mRNA-1:exon:16548;Parent=Msa0076990-mRNA-1
chr1_2 five_prime_UTR 53436385 53436509 53436385 ID=Msa0076990-mRNA-1:five_prime_utr;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53436510 53436581 53436510 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53436655 53436768 53436655 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53436786 53436891 53436786 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53437802 53437951 53437802 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53438994 53439076 53438994 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53439185 53439393 53439185 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53440153 53440221 53440153 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53440535 53440653 53440535 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53441508 53441583 53441508 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53442053 53442161 53442053 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53443084 53443181 53443084 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53443262 53443355 53443262 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 CDS 53443439 53443570 53443439 ID=Msa0076990-mRNA-1:cds;Parent=Msa0076990-mRNA-1
chr1_2 three_prime_UTR 53443571 53443768 53443571 ID=Msa0076990-mRNA-1:three_prime_utr;Parent=Msa0076990-mRNA-1
Gene Sequence

>Msa0076990

ATGGAGATCATTGCTAGCTCTGTAATCAATCCTTCTTTCCCTCTTCGTTACCCAACAATCTCCGTTTTTCAGGTTTCAAACTGGAACTGTTTTTCCGTAGTAGAATCAAGGTTTTCATTTTCACTCACACATAAGAGGAAGAAAGTTACTAAATTTTCAATTGGGGTGGTGCCAAAAGTAAACAACTTGGAGTTTCCTTCGCAGAAGGAGGAAATGGAACAAGGATTCTTCTGTGAAGCATGCTTCTTTACTGTTTGTGCGGTTGGTTGCTGGAGTTATGTTGGTTGTGTCGGGGCCCTGACGGAAGAGAATCTCCTCTTTCTGGAGGCGTGGAGAACAATTGACCGAGCATATATCGACAAGAATTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAAATGCATTGCGCAACGAACCCATGAACAACCGTGAAGAGACATATATGGCGATAAGAAAGATGCTTGCCACATTGGATGATCCCTTCACTAGATTTTTAGAGCCTGAGAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGATATCAATAGGCTACCCTACCAAAGCAGACATGCCATCCGATGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTTGTCTGGAGATGTTATCCTGGCCATTGATGATATGAGCACAGAAAAGTTGGGTCTGTATGATGCAGCTGAACGCCTACAAGGACCTGATGGAAGCTCTGTTGCATTGACCATACGTAGTGGTTCTGACGTAAAGCACCTAGCTCTAACGCGAGAGAAAGTTACAGTCAATCCAGTGAAGTCAAGACTGTGCAAGTTACCTGCTGCAGGAAATAATTCCCCAACAGTTGGTTATATAAAATTAACATCGTTCAACCAAAATGCATCTCGTGCTATCAAAGAAGCAATCAATACGTTCAGGAGTAATAATGTAAATGCATTTGTTTTGGACCTCAGAGATAATAGGTTGGACAAAGGTGTGATTGTGTATATTTGTGATAGTCGTGGGGTTCGAGATATACTGGATACAGATGGAAGTAGTGCCCTAGCAACTTCTGAACCTCTGGCTGTGCTGGTAAACAAGGGAACTGCAAGTGCCAGCGAAATATTAGCCGGTGCATTGAAAGATAACAAGCGGGCCATATTGTACGGAGAGCCAACATTTGGAAAAGGGAAGATCCAATCAGTATTTGAGCTCTCAGATGGCTCAGGACTAGTTGTTACAGTTGCTCGCTACGAGACACCTGCGCACACAGATATTGACAAGGTTGGTGTCATTCCTGACCATCCTCTACCAACATCATTTCCTAAGGATGAAGATGCATTTTGCAATTGCCTGCAGGATCCTGCTTCTTCGTGTAATAATAATAATAACAGGGTCCAGTTATTTTCAAAATGA

Protein sequence

>Msa0076990

MEIIASSVINPSFPLRYPTISVFQVSNWNCFSVVESRFSFSLTHKRKKVTKFSIGVVPKVNNLEFPSQKEEMEQGFFCEACFFTVCAVGCWSYVGCVGALTEENLLFLEAWRTIDRAYIDKNFNGQSWFRYRENALRNEPMNNREETYMAIRKMLATLDDPFTRFLEPEKFRSLRSGTKGALTGVGISIGYPTKADMPSDGLVVISASPGGPAYRAGVLSGDVILAIDDMSTEKLGLYDAAERLQGPDGSSVALTIRSGSDVKHLALTREKVTVNPVKSRLCKLPAAGNNSPTVGYIKLTSFNQNASRAIKEAINTFRSNNVNAFVLDLRDNRLDKGVIVYICDSRGVRDILDTDGSSALATSEPLAVLVNKGTASASEILAGALKDNKRAILYGEPTFGKGKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPTSFPKDEDAFCNCLQDPASSCNNNNNRVQLFSK*