Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164490 | sp|F4KEV7|FHIT_ARATH | 56.647 | 173 | 52 | 1 | 6 | 178 | 28 | 177 | 1.78e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164490 | A0A072UY82 | 80.000 | 180 | 17 | 1 | 1 | 180 | 1 | 161 | 8.15e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009640 | Msa0164490 | 0.806210 | 9.188228e-50 | -8.615850e-47 |
| Msa0011450 | Msa0164490 | -0.817681 | 2.906845e-52 | -8.615850e-47 |
| Msa0030700 | Msa0164490 | 0.815116 | 1.090000e-51 | -8.615850e-47 |
| Msa0078120 | Msa0164490 | 0.807725 | 4.393034e-50 | -8.615850e-47 |
| Msa0126000 | Msa0164490 | -0.802871 | 4.567303e-49 | -8.615850e-47 |
| Msa0139680 | Msa0164490 | 0.810971 | 8.838151e-51 | -8.615850e-47 |
| Msa0164490 | Msa0170630 | 0.840658 | 7.617417e-58 | -8.615850e-47 |
| Msa0164490 | Msa0217060 | 0.810793 | 9.661390e-51 | -8.615850e-47 |
| Msa0164490 | Msa0225190 | -0.813458 | 2.533643e-51 | -8.615850e-47 |
| Msa0164490 | Msa0285890 | 0.800016 | 1.756024e-48 | -8.615850e-47 |
| Msa0164490 | Msa0334630 | 0.800073 | 1.709990e-48 | -8.615850e-47 |
| Msa0164490 | Msa0415100 | 0.968322 | 1.636938e-128 | -8.615850e-47 |
| Msa0164490 | Msa0457560 | 0.802453 | 5.570580e-49 | -8.615850e-47 |
| Msa0164490 | Msa0535400 | 0.804480 | 2.117406e-49 | -8.615850e-47 |
| Msa0164490 | Msa0577490 | 0.840535 | 8.202121e-58 | -8.615850e-47 |
| Msa0164490 | Msa0611060 | 0.804890 | 1.738290e-49 | -8.615850e-47 |
| Msa0164490 | Msa0657720 | 0.802434 | 5.619895e-49 | -8.615850e-47 |
| Msa0164490 | Msa0658190 | 0.809282 | 2.044075e-50 | -8.615850e-47 |
| Msa0164490 | Msa0709140 | 0.808992 | 2.358410e-50 | -8.615850e-47 |
| Msa0164490 | Msa0725580 | 0.813068 | 3.086208e-51 | -8.615850e-47 |
| Msa0164490 | Msa0744640 | 0.808990 | 2.360050e-50 | -8.615850e-47 |
| Msa0164490 | Msa0833270 | 0.811781 | 5.896682e-51 | -8.615850e-47 |
| Msa0164490 | Msa0841730 | 0.809221 | 2.105971e-50 | -8.615850e-47 |
| Msa0164490 | Msa0879930 | 0.816328 | 5.853210e-52 | -8.615850e-47 |
| Msa0164490 | Msa0882480 | -0.803606 | 3.216770e-49 | -8.615850e-47 |
| Msa0164490 | Msa0896930 | 0.822849 | 1.900462e-53 | -8.615850e-47 |
| Msa0164490 | Msa0905570 | 0.800796 | 1.218014e-48 | -8.615850e-47 |
| Msa0164490 | Msa0930270 | 0.817849 | 2.663200e-52 | -8.615850e-47 |
| Msa0164490 | Msa0966580 | 0.823090 | 1.669776e-53 | -8.615850e-47 |
| Msa0164490 | Msa1092310 | 0.853544 | 2.227768e-61 | -8.615850e-47 |
| Msa0164490 | Msa1114670 | 0.829309 | 5.531709e-55 | -8.615850e-47 |
| Msa0164490 | Msa1116840 | 0.844570 | 6.968510e-59 | -8.615850e-47 |
| Msa0164490 | Msa1126320 | -0.801371 | 9.293411e-49 | -8.615850e-47 |
| Msa0164490 | Msa1133700 | 0.803798 | 2.935525e-49 | -8.615850e-47 |
| Msa0164490 | Msa1136760 | 0.815374 | 9.550642e-52 | -8.615850e-47 |
| Msa0164490 | Msa1159170 | 0.845783 | 3.274250e-59 | -8.615850e-47 |
| Msa0164490 | Msa1255210 | 0.804677 | 1.925612e-49 | -8.615850e-47 |
| Msa0164490 | Msa1256060 | 0.809954 | 1.465800e-50 | -8.615850e-47 |
| Msa0164490 | Msa1281690 | 0.803851 | 2.861353e-49 | -8.615850e-47 |
| Msa0164490 | Msa1295650 | 0.802279 | 6.048725e-49 | -8.615850e-47 |
| Msa0164490 | Msa1306830 | 0.827409 | 1.589327e-54 | -8.615850e-47 |
| Msa0164490 | Msa1307530 | 0.812921 | 3.323387e-51 | -8.615850e-47 |
| Msa0164490 | Msa1362850 | 0.804674 | 1.928226e-49 | -8.615850e-47 |
| Msa0164490 | Msa1398140 | 0.806263 | 8.955785e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164490 | MtrunA17_Chr3g0108841 | 87.407 | 135 | 17 | 0 | 46 | 180 | 18 | 152 | 2.15e-84 | 245 |
| Msa0164490 | MtrunA17_Chr3g0108711 | 85.593 | 118 | 12 | 2 | 64 | 180 | 36 | 149 | 1.88e-68 | 205 |
| Msa0164490 | MtrunA17_Chr3g0108701 | 76.056 | 71 | 17 | 0 | 110 | 180 | 53 | 123 | 3.12e-26 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164490 | AT5G58240.1 | 56.647 | 173 | 52 | 1 | 6 | 178 | 28 | 177 | 1.81e-65 | 199 |
| Msa0164490 | AT5G58240.2 | 56.647 | 173 | 52 | 1 | 6 | 178 | 8 | 157 | 2.24e-65 | 198 |
| Msa0164490 | AT5G58240.3 | 64.000 | 125 | 45 | 0 | 54 | 178 | 1 | 125 | 1.67e-56 | 174 |
Find 38 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTGTTTATTTACCTTAA+TGG | 0.217298 | 1_4:+44001932 | None:intergenic |
| CTCCTCTACTCACTCCATTA+AGG | 0.247889 | 1_4:-44001946 | Msa0164490:intron |
| ATGATGAGAACATTGATTTA+TGG | 0.249450 | 1_4:-44000657 | Msa0164490:CDS |
| GGTTCCTATTATATGGAAAT+TGG | 0.256727 | 1_4:-44000012 | Msa0164490:three_prime_UTR |
| GTTACGAGGTTCCTATTATA+TGG | 0.260592 | 1_4:-44000019 | Msa0164490:three_prime_UTR |
| TTGTAGCCGTGATGATATTA+AGG | 0.266228 | 1_4:+44000822 | None:intergenic |
| CCTCTTGTGCCATTTCTTCA+AGG | 0.271826 | 1_4:+44000140 | None:intergenic |
| ACTTCCAATTTCCATATAAT+AGG | 0.283567 | 1_4:+44000008 | None:intergenic |
| GCTGTAGAATACTATGATTT+TGG | 0.298663 | 1_4:-44001823 | Msa0164490:CDS |
| CAATGATGACATTTATGATT+TGG | 0.306333 | 1_4:-44000330 | Msa0164490:intron |
| AATGAAAATATTGATAATAA+AGG | 0.348812 | 1_4:-44000068 | Msa0164490:three_prime_UTR |
| TGGATTTAGAGAGGAAAGAT+AGG | 0.366670 | 1_4:-44000165 | Msa0164490:CDS |
| AGATAGGAGCCTTGAAGAAA+TGG | 0.398545 | 1_4:-44000149 | Msa0164490:CDS |
| ATATTGATAATAAAGGAATA+AGG | 0.418866 | 1_4:-44000061 | Msa0164490:three_prime_UTR |
| ACACGCTTCACTTCGCGCTT+CGG | 0.426783 | 1_4:+44000694 | None:intergenic |
| TATGTTTCTTACGGTAGCTT+TGG | 0.426990 | 1_4:-43999985 | Msa0164490:three_prime_UTR |
| ATGTAAGTGATGATGCATTA+TGG | 0.441950 | 1_4:+44000596 | None:intergenic |
| ATTGGAAGTTATGTTTCTTA+CGG | 0.470193 | 1_4:-43999994 | Msa0164490:three_prime_UTR |
| TTGTATGAAACACTGAACTA+TGG | 0.490397 | 1_4:+44001785 | None:intergenic |
| AGAGATTTAGTAACTTTCAA+AGG | 0.503513 | 1_4:+44000095 | None:intergenic |
| AACCAGGATGGACCTCAAGC+TGG | 0.511868 | 1_4:-44000413 | Msa0164490:intron |
| AACCTGCGTCCTGCTGTCAC+TGG | 0.527066 | 1_4:-44001739 | Msa0164490:intron |
| TTGTTCTTGTATACACATCA+AGG | 0.538035 | 1_4:-44001980 | Msa0164490:five_prime_UTR |
| TTCATATCCATATACTTCCT+CGG | 0.540594 | 1_4:-44000373 | Msa0164490:CDS |
| CCTTGAAGAAATGGCACAAG+AGG | 0.544026 | 1_4:-44000140 | Msa0164490:CDS |
| TGGCGCATAGCACATAAACT+TGG | 0.555803 | 1_4:-44000637 | Msa0164490:CDS |
| GACAAAGGCAAAAGAAAGAT+CGG | 0.560339 | 1_4:+44001762 | None:intergenic |
| TACCTTAATGGAGTGAGTAG+AGG | 0.565031 | 1_4:+44001944 | None:intergenic |
| AGCAAGATACCAGTGACAGC+AGG | 0.566014 | 1_4:+44001730 | None:intergenic |
| TCAAAACCTTAATATCATCA+CGG | 0.607760 | 1_4:-44000828 | Msa0164490:CDS |
| GGAACTGATTGTCCAGCTTG+AGG | 0.613109 | 1_4:+44000401 | None:intergenic |
| GTTGAAAAGTAAGCTAGCTG+TGG | 0.621405 | 1_4:-44000185 | Msa0164490:CDS |
| AGCTAGCTGTGGATTTAGAG+AGG | 0.624532 | 1_4:-44000174 | Msa0164490:CDS |
| AGCAGGACGCAGGTTGACAA+AGG | 0.629553 | 1_4:+44001747 | None:intergenic |
| TACCAGTGACAGCAGGACGC+AGG | 0.636751 | 1_4:+44001737 | None:intergenic |
| AGTATATGGATATGAACATG+AGG | 0.648556 | 1_4:+44000380 | None:intergenic |
| TGAAAACTTGTATAGTTACG+AGG | 0.671860 | 1_4:-44000033 | Msa0164490:three_prime_UTR |
| TATGAAACACTGAACTATGG+TGG | 0.696537 | 1_4:+44001788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTCCTAAAATATTT+AGG | + | chr1_4:44000626-44000645 | None:intergenic | 10.0% |
| !!! | AATGAAAATATTGATAATAA+AGG | - | chr1_4:44001979-44001998 | Msa0164490:five_prime_UTR | 10.0% |
| !! | AAAAAATTCCTAAAATATTT+AGG | + | chr1_4:44000626-44000645 | None:intergenic | 10.0% |
| !!! | AATGAAAATATTGATAATAA+AGG | - | chr1_4:44001979-44001998 | Msa0164490:five_prime_UTR | 10.0% |
| !!! | AGATTAATGTTACTTTTATT+GGG | - | chr1_4:44000185-44000204 | Msa0164490:CDS | 15.0% |
| !!! | AAAAAATGCCTAAATATTTT+AGG | - | chr1_4:44000615-44000634 | Msa0164490:CDS | 15.0% |
| !! | AAAGAAAAAAATTATTGTGA+GGG | - | chr1_4:44000956-44000975 | Msa0164490:intron | 15.0% |
| !!! | TATTGTTATTTGAGTATATA+AGG | - | chr1_4:44001503-44001522 | Msa0164490:intron | 15.0% |
| !!! | CATTTGTGTTTTTAATAATT+TGG | - | chr1_4:44001750-44001769 | Msa0164490:CDS | 15.0% |
| !! | CTAAAAATCAAGTAAAAATT+TGG | - | chr1_4:44001790-44001809 | Msa0164490:CDS | 15.0% |
| !!! | ATATTGATAATAAAGGAATA+AGG | - | chr1_4:44001986-44002005 | Msa0164490:five_prime_UTR | 15.0% |
| !!! | AGATTAATGTTACTTTTATT+GGG | - | chr1_4:44000185-44000204 | Msa0164490:CDS | 15.0% |
| !!! | AAAAAATGCCTAAATATTTT+AGG | - | chr1_4:44000615-44000634 | Msa0164490:CDS | 15.0% |
| !! | AAAGAAAAAAATTATTGTGA+GGG | - | chr1_4:44000956-44000975 | Msa0164490:intron | 15.0% |
| !!! | TATTGTTATTTGAGTATATA+AGG | - | chr1_4:44001503-44001522 | Msa0164490:intron | 15.0% |
| !!! | CATTTGTGTTTTTAATAATT+TGG | - | chr1_4:44001750-44001769 | Msa0164490:CDS | 15.0% |
| !! | CTAAAAATCAAGTAAAAATT+TGG | - | chr1_4:44001790-44001809 | Msa0164490:CDS | 15.0% |
| !!! | ATATTGATAATAAAGGAATA+AGG | - | chr1_4:44001986-44002005 | Msa0164490:five_prime_UTR | 15.0% |
| !! | TAGTTGTTTATTTACCTTAA+TGG | + | chr1_4:44000118-44000137 | None:intergenic | 20.0% |
| !!! | AAGTTAACATTTGATGATTA+TGG | + | chr1_4:44000142-44000161 | None:intergenic | 20.0% |
| !! | AGTAACATTAATCTCATATA+TGG | + | chr1_4:44000179-44000198 | None:intergenic | 20.0% |
| !!! | GAGATTAATGTTACTTTTAT+TGG | - | chr1_4:44000184-44000203 | Msa0164490:CDS | 20.0% |
| !!! | GATTAATGTTACTTTTATTG+GGG | - | chr1_4:44000186-44000205 | Msa0164490:CDS | 20.0% |
| !!! | ATTAATGTTACTTTTATTGG+GGG | - | chr1_4:44000187-44000206 | Msa0164490:CDS | 20.0% |
| !! | TTATTAACATCACACTAATA+AGG | + | chr1_4:44000435-44000454 | None:intergenic | 20.0% |
| !! | GTTAATCTATCGTTATAATA+TGG | - | chr1_4:44000700-44000719 | Msa0164490:CDS | 20.0% |
| !! | TTTCTTTCTTTATAAACTAG+AGG | + | chr1_4:44000943-44000962 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAATTATTGTG+AGG | - | chr1_4:44000955-44000974 | Msa0164490:intron | 20.0% |
| !!! | ATTTTGTTAGAAATTTGTCT+GGG | - | chr1_4:44001122-44001141 | Msa0164490:intron | 20.0% |
| !!! | CTTTTAATGTAGAGTATATA+AGG | - | chr1_4:44001531-44001550 | Msa0164490:intron | 20.0% |
| !! | TAGTTGTTTATTTACCTTAA+TGG | + | chr1_4:44000118-44000137 | None:intergenic | 20.0% |
| !!! | AAGTTAACATTTGATGATTA+TGG | + | chr1_4:44000142-44000161 | None:intergenic | 20.0% |
| !! | AGTAACATTAATCTCATATA+TGG | + | chr1_4:44000179-44000198 | None:intergenic | 20.0% |
| !!! | GAGATTAATGTTACTTTTAT+TGG | - | chr1_4:44000184-44000203 | Msa0164490:CDS | 20.0% |
| !!! | GATTAATGTTACTTTTATTG+GGG | - | chr1_4:44000186-44000205 | Msa0164490:CDS | 20.0% |
| !!! | ATTAATGTTACTTTTATTGG+GGG | - | chr1_4:44000187-44000206 | Msa0164490:CDS | 20.0% |
| !! | TTATTAACATCACACTAATA+AGG | + | chr1_4:44000435-44000454 | None:intergenic | 20.0% |
| !! | GTTAATCTATCGTTATAATA+TGG | - | chr1_4:44000700-44000719 | Msa0164490:CDS | 20.0% |
| !! | TTTCTTTCTTTATAAACTAG+AGG | + | chr1_4:44000943-44000962 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAATTATTGTG+AGG | - | chr1_4:44000955-44000974 | Msa0164490:intron | 20.0% |
| !!! | ATTTTGTTAGAAATTTGTCT+GGG | - | chr1_4:44001122-44001141 | Msa0164490:intron | 20.0% |
| !!! | CTTTTAATGTAGAGTATATA+AGG | - | chr1_4:44001531-44001550 | Msa0164490:intron | 20.0% |
| !! | TTACAATTTGCATTTTGCTA+TGG | + | chr1_4:44000031-44000050 | None:intergenic | 25.0% |
| ! | GAGATTTAGATTTAGAGATA+TGG | - | chr1_4:44000650-44000669 | Msa0164490:CDS | 25.0% |
| ! | TATGGAACATAGTAATACAT+AGG | - | chr1_4:44000668-44000687 | Msa0164490:CDS | 25.0% |
| ! | ATGGAACATAGTAATACATA+GGG | - | chr1_4:44000669-44000688 | Msa0164490:CDS | 25.0% |
| ! | AAAAGATAGCATCTCAATAT+AGG | - | chr1_4:44001028-44001047 | Msa0164490:intron | 25.0% |
| !! | CATTTTGTTAGAAATTTGTC+TGG | - | chr1_4:44001121-44001140 | Msa0164490:intron | 25.0% |
| ! | TCAAAACCTTAATATCATCA+CGG | - | chr1_4:44001219-44001238 | Msa0164490:intron | 25.0% |
| ! | AATGTAAACATGAATCTACT+TGG | - | chr1_4:44001271-44001290 | Msa0164490:intron | 25.0% |
| !!! | ATGATGAGAACATTGATTTA+TGG | - | chr1_4:44001390-44001409 | Msa0164490:intron | 25.0% |
| ! | ATTCTTCAAATTGTCTTACT+TGG | + | chr1_4:44001484-44001503 | None:intergenic | 25.0% |
| ! | CAATGATGACATTTATGATT+TGG | - | chr1_4:44001717-44001736 | Msa0164490:intron | 25.0% |
| ! | AGAGATTTAGTAACTTTCAA+AGG | + | chr1_4:44001955-44001974 | None:intergenic | 25.0% |
| ! | ACTTCCAATTTCCATATAAT+AGG | + | chr1_4:44002042-44002061 | None:intergenic | 25.0% |
| ! | ATTGGAAGTTATGTTTCTTA+CGG | - | chr1_4:44002053-44002072 | Msa0164490:five_prime_UTR | 25.0% |
| !! | TTACAATTTGCATTTTGCTA+TGG | + | chr1_4:44000031-44000050 | None:intergenic | 25.0% |
| ! | GAGATTTAGATTTAGAGATA+TGG | - | chr1_4:44000650-44000669 | Msa0164490:CDS | 25.0% |
| ! | TATGGAACATAGTAATACAT+AGG | - | chr1_4:44000668-44000687 | Msa0164490:CDS | 25.0% |
| ! | ATGGAACATAGTAATACATA+GGG | - | chr1_4:44000669-44000688 | Msa0164490:CDS | 25.0% |
| ! | AAAAGATAGCATCTCAATAT+AGG | - | chr1_4:44001028-44001047 | Msa0164490:intron | 25.0% |
| !! | CATTTTGTTAGAAATTTGTC+TGG | - | chr1_4:44001121-44001140 | Msa0164490:intron | 25.0% |
| ! | TCAAAACCTTAATATCATCA+CGG | - | chr1_4:44001219-44001238 | Msa0164490:intron | 25.0% |
| ! | AATGTAAACATGAATCTACT+TGG | - | chr1_4:44001271-44001290 | Msa0164490:intron | 25.0% |
| !!! | ATGATGAGAACATTGATTTA+TGG | - | chr1_4:44001390-44001409 | Msa0164490:intron | 25.0% |
| ! | ATTCTTCAAATTGTCTTACT+TGG | + | chr1_4:44001484-44001503 | None:intergenic | 25.0% |
| ! | CAATGATGACATTTATGATT+TGG | - | chr1_4:44001717-44001736 | Msa0164490:intron | 25.0% |
| ! | AGAGATTTAGTAACTTTCAA+AGG | + | chr1_4:44001955-44001974 | None:intergenic | 25.0% |
| ! | ACTTCCAATTTCCATATAAT+AGG | + | chr1_4:44002042-44002061 | None:intergenic | 25.0% |
| ! | ATTGGAAGTTATGTTTCTTA+CGG | - | chr1_4:44002053-44002072 | Msa0164490:five_prime_UTR | 25.0% |
| TTGTTCTTGTATACACATCA+AGG | - | chr1_4:44000067-44000086 | Msa0164490:three_prime_UTR | 30.0% | |
| ! | GCTGTAGAATACTATGATTT+TGG | - | chr1_4:44000224-44000243 | Msa0164490:intron | 30.0% |
| TTGTATGAAACACTGAACTA+TGG | + | chr1_4:44000265-44000284 | None:intergenic | 30.0% | |
| ATATGAGCAATAGATCAAAG+AGG | + | chr1_4:44000349-44000368 | None:intergenic | 30.0% | |
| ! | CTTTCCTTTTTATCTTTTGC+AGG | - | chr1_4:44000403-44000422 | Msa0164490:CDS | 30.0% |
| ATGACCTGCAAAAGATAAAA+AGG | + | chr1_4:44000410-44000429 | None:intergenic | 30.0% | |
| AGTAATACATAGGGTAGTAA+TGG | - | chr1_4:44000678-44000697 | Msa0164490:CDS | 30.0% | |
| ACAACAACATTTGATATGTC+CGG | - | chr1_4:44000765-44000784 | Msa0164490:intron | 30.0% | |
| ACAAAACAAGTGCTTAAAAG+TGG | + | chr1_4:44000912-44000931 | None:intergenic | 30.0% | |
| !!! | TTTTAAGCACTTGTTTTGTG+AGG | - | chr1_4:44000913-44000932 | Msa0164490:intron | 30.0% |
| ! | AATTGACACACTCTTTTGTT+AGG | - | chr1_4:44000982-44001001 | Msa0164490:intron | 30.0% |
| !!! | AGATGCTATCTTTTGAGTTT+GGG | + | chr1_4:44001022-44001041 | None:intergenic | 30.0% |
| GCTGTATTTGTAATCACATA+AGG | - | chr1_4:44001184-44001203 | Msa0164490:intron | 30.0% | |
| TTTGTAATCACATAAGGCTA+TGG | - | chr1_4:44001190-44001209 | Msa0164490:intron | 30.0% | |
| ! | ATGTAAGTGATGATGCATTA+TGG | + | chr1_4:44001454-44001473 | None:intergenic | 30.0% |
| ATTGTATAGCCATATAGCAT+TGG | + | chr1_4:44001585-44001604 | None:intergenic | 30.0% | |
| AGTATATGGATATGAACATG+AGG | + | chr1_4:44001670-44001689 | None:intergenic | 30.0% | |
| TTCATATCCATATACTTCCT+CGG | - | chr1_4:44001674-44001693 | Msa0164490:intron | 30.0% | |
| !! | GATGACATTTATGATTTGGT+AGG | - | chr1_4:44001721-44001740 | Msa0164490:intron | 30.0% |
| !! | ACATTTATGATTTGGTAGGA+TGG | - | chr1_4:44001725-44001744 | Msa0164490:intron | 30.0% |
| GCAGATAAATGAAAAAGAGA+AGG | - | chr1_4:44001838-44001857 | Msa0164490:intron | 30.0% | |
| TGAAAACTTGTATAGTTACG+AGG | - | chr1_4:44002014-44002033 | Msa0164490:five_prime_UTR | 30.0% | |
| GGTTCCTATTATATGGAAAT+TGG | - | chr1_4:44002035-44002054 | Msa0164490:five_prime_UTR | 30.0% | |
| TTGTTCTTGTATACACATCA+AGG | - | chr1_4:44000067-44000086 | Msa0164490:three_prime_UTR | 30.0% | |
| ! | GCTGTAGAATACTATGATTT+TGG | - | chr1_4:44000224-44000243 | Msa0164490:intron | 30.0% |
| TTGTATGAAACACTGAACTA+TGG | + | chr1_4:44000265-44000284 | None:intergenic | 30.0% | |
| ATATGAGCAATAGATCAAAG+AGG | + | chr1_4:44000349-44000368 | None:intergenic | 30.0% | |
| ! | CTTTCCTTTTTATCTTTTGC+AGG | - | chr1_4:44000403-44000422 | Msa0164490:CDS | 30.0% |
| ATGACCTGCAAAAGATAAAA+AGG | + | chr1_4:44000410-44000429 | None:intergenic | 30.0% | |
| AGTAATACATAGGGTAGTAA+TGG | - | chr1_4:44000678-44000697 | Msa0164490:CDS | 30.0% | |
| ACAACAACATTTGATATGTC+CGG | - | chr1_4:44000765-44000784 | Msa0164490:intron | 30.0% | |
| ACAAAACAAGTGCTTAAAAG+TGG | + | chr1_4:44000912-44000931 | None:intergenic | 30.0% | |
| !!! | TTTTAAGCACTTGTTTTGTG+AGG | - | chr1_4:44000913-44000932 | Msa0164490:intron | 30.0% |
| ! | AATTGACACACTCTTTTGTT+AGG | - | chr1_4:44000982-44001001 | Msa0164490:intron | 30.0% |
| !!! | AGATGCTATCTTTTGAGTTT+GGG | + | chr1_4:44001022-44001041 | None:intergenic | 30.0% |
| GCTGTATTTGTAATCACATA+AGG | - | chr1_4:44001184-44001203 | Msa0164490:intron | 30.0% | |
| TTTGTAATCACATAAGGCTA+TGG | - | chr1_4:44001190-44001209 | Msa0164490:intron | 30.0% | |
| ! | ATGTAAGTGATGATGCATTA+TGG | + | chr1_4:44001454-44001473 | None:intergenic | 30.0% |
| ATTGTATAGCCATATAGCAT+TGG | + | chr1_4:44001585-44001604 | None:intergenic | 30.0% | |
| AGTATATGGATATGAACATG+AGG | + | chr1_4:44001670-44001689 | None:intergenic | 30.0% | |
| TTCATATCCATATACTTCCT+CGG | - | chr1_4:44001674-44001693 | Msa0164490:intron | 30.0% | |
| !! | GATGACATTTATGATTTGGT+AGG | - | chr1_4:44001721-44001740 | Msa0164490:intron | 30.0% |
| !! | ACATTTATGATTTGGTAGGA+TGG | - | chr1_4:44001725-44001744 | Msa0164490:intron | 30.0% |
| GCAGATAAATGAAAAAGAGA+AGG | - | chr1_4:44001838-44001857 | Msa0164490:intron | 30.0% | |
| TGAAAACTTGTATAGTTACG+AGG | - | chr1_4:44002014-44002033 | Msa0164490:five_prime_UTR | 30.0% | |
| GGTTCCTATTATATGGAAAT+TGG | - | chr1_4:44002035-44002054 | Msa0164490:five_prime_UTR | 30.0% | |
| ! | ATTGGGGGTGTAAATAAAGA+TGG | - | chr1_4:44000202-44000221 | Msa0164490:CDS | 35.0% |
| TATGAAACACTGAACTATGG+TGG | + | chr1_4:44000262-44000281 | None:intergenic | 35.0% | |
| GACAAAGGCAAAAGAAAGAT+CGG | + | chr1_4:44000288-44000307 | None:intergenic | 35.0% | |
| ATGGTAAATGTATGTCTCGT+AGG | - | chr1_4:44000719-44000738 | Msa0164490:intron | 35.0% | |
| AGCATGTTCAAATCAACAAC+CGG | + | chr1_4:44000787-44000806 | None:intergenic | 35.0% | |
| ACACAACAAGTGCTTAAAAG+AGG | + | chr1_4:44000815-44000834 | None:intergenic | 35.0% | |
| !!! | TTTTAAGCACTTGTTGTGTG+AGG | - | chr1_4:44000816-44000835 | Msa0164490:CDS | 35.0% |
| !!! | GAGATGCTATCTTTTGAGTT+TGG | + | chr1_4:44001023-44001042 | None:intergenic | 35.0% |
| GCTTCATCATATAACCACAT+TGG | - | chr1_4:44001081-44001100 | Msa0164490:intron | 35.0% | |
| ACAGTAATCACTAACCAATG+TGG | + | chr1_4:44001098-44001117 | None:intergenic | 35.0% | |
| TTGTAGCCGTGATGATATTA+AGG | + | chr1_4:44001228-44001247 | None:intergenic | 35.0% | |
| CTGGTTCAGAAAGATTGATT+TGG | + | chr1_4:44001620-44001639 | None:intergenic | 35.0% | |
| CAAATCAATCTTTCTGAACC+AGG | - | chr1_4:44001618-44001637 | Msa0164490:intron | 35.0% | |
| CATATACTTCCTCGGAAAAA+CGG | - | chr1_4:44001682-44001701 | Msa0164490:intron | 35.0% | |
| TGGATTTAGAGAGGAAAGAT+AGG | - | chr1_4:44001882-44001901 | Msa0164490:intron | 35.0% | |
| GTTACGAGGTTCCTATTATA+TGG | - | chr1_4:44002028-44002047 | Msa0164490:five_prime_UTR | 35.0% | |
| TATGTTTCTTACGGTAGCTT+TGG | - | chr1_4:44002062-44002081 | Msa0164490:five_prime_UTR | 35.0% | |
| ! | ATTGGGGGTGTAAATAAAGA+TGG | - | chr1_4:44000202-44000221 | Msa0164490:CDS | 35.0% |
| TATGAAACACTGAACTATGG+TGG | + | chr1_4:44000262-44000281 | None:intergenic | 35.0% | |
| GACAAAGGCAAAAGAAAGAT+CGG | + | chr1_4:44000288-44000307 | None:intergenic | 35.0% | |
| ATGGTAAATGTATGTCTCGT+AGG | - | chr1_4:44000719-44000738 | Msa0164490:intron | 35.0% | |
| AGCATGTTCAAATCAACAAC+CGG | + | chr1_4:44000787-44000806 | None:intergenic | 35.0% | |
| ACACAACAAGTGCTTAAAAG+AGG | + | chr1_4:44000815-44000834 | None:intergenic | 35.0% | |
| !!! | TTTTAAGCACTTGTTGTGTG+AGG | - | chr1_4:44000816-44000835 | Msa0164490:CDS | 35.0% |
| !!! | GAGATGCTATCTTTTGAGTT+TGG | + | chr1_4:44001023-44001042 | None:intergenic | 35.0% |
| GCTTCATCATATAACCACAT+TGG | - | chr1_4:44001081-44001100 | Msa0164490:intron | 35.0% | |
| ACAGTAATCACTAACCAATG+TGG | + | chr1_4:44001098-44001117 | None:intergenic | 35.0% | |
| TTGTAGCCGTGATGATATTA+AGG | + | chr1_4:44001228-44001247 | None:intergenic | 35.0% | |
| CTGGTTCAGAAAGATTGATT+TGG | + | chr1_4:44001620-44001639 | None:intergenic | 35.0% | |
| CAAATCAATCTTTCTGAACC+AGG | - | chr1_4:44001618-44001637 | Msa0164490:intron | 35.0% | |
| CATATACTTCCTCGGAAAAA+CGG | - | chr1_4:44001682-44001701 | Msa0164490:intron | 35.0% | |
| TGGATTTAGAGAGGAAAGAT+AGG | - | chr1_4:44001882-44001901 | Msa0164490:intron | 35.0% | |
| GTTACGAGGTTCCTATTATA+TGG | - | chr1_4:44002028-44002047 | Msa0164490:five_prime_UTR | 35.0% | |
| TATGTTTCTTACGGTAGCTT+TGG | - | chr1_4:44002062-44002081 | Msa0164490:five_prime_UTR | 35.0% | |
| TACCTTAATGGAGTGAGTAG+AGG | + | chr1_4:44000106-44000125 | None:intergenic | 40.0% | |
| GCAATAGATCAAAGAGGTGA+GGG | + | chr1_4:44000343-44000362 | None:intergenic | 40.0% | |
| AGCAATAGATCAAAGAGGTG+AGG | + | chr1_4:44000344-44000363 | None:intergenic | 40.0% | |
| GCTTAAAAGTGGAGAATAGC+AGG | + | chr1_4:44000901-44000920 | None:intergenic | 40.0% | |
| TGCCTAAGACCAATGCTATA+TGG | - | chr1_4:44001573-44001592 | Msa0164490:intron | 40.0% | |
| !! | AGCCATATAGCATTGGTCTT+AGG | + | chr1_4:44001578-44001597 | None:intergenic | 40.0% |
| TCAATCTTTCTGAACCAGGA+TGG | - | chr1_4:44001622-44001641 | Msa0164490:intron | 40.0% | |
| !! | CGTTTTTCCGAGGAAGTATA+TGG | + | chr1_4:44001684-44001703 | None:intergenic | 40.0% |
| GTTGAAAAGTAAGCTAGCTG+TGG | - | chr1_4:44001862-44001881 | Msa0164490:intron | 40.0% | |
| AGATAGGAGCCTTGAAGAAA+TGG | - | chr1_4:44001898-44001917 | Msa0164490:intron | 40.0% | |
| TACCTTAATGGAGTGAGTAG+AGG | + | chr1_4:44000106-44000125 | None:intergenic | 40.0% | |
| GCAATAGATCAAAGAGGTGA+GGG | + | chr1_4:44000343-44000362 | None:intergenic | 40.0% | |
| AGCAATAGATCAAAGAGGTG+AGG | + | chr1_4:44000344-44000363 | None:intergenic | 40.0% | |
| GCTTAAAAGTGGAGAATAGC+AGG | + | chr1_4:44000901-44000920 | None:intergenic | 40.0% | |
| TGCCTAAGACCAATGCTATA+TGG | - | chr1_4:44001573-44001592 | Msa0164490:intron | 40.0% | |
| !! | AGCCATATAGCATTGGTCTT+AGG | + | chr1_4:44001578-44001597 | None:intergenic | 40.0% |
| TCAATCTTTCTGAACCAGGA+TGG | - | chr1_4:44001622-44001641 | Msa0164490:intron | 40.0% | |
| !! | CGTTTTTCCGAGGAAGTATA+TGG | + | chr1_4:44001684-44001703 | None:intergenic | 40.0% |
| GTTGAAAAGTAAGCTAGCTG+TGG | - | chr1_4:44001862-44001881 | Msa0164490:intron | 40.0% | |
| AGATAGGAGCCTTGAAGAAA+TGG | - | chr1_4:44001898-44001917 | Msa0164490:intron | 40.0% | |
| CTCCTCTACTCACTCCATTA+AGG | - | chr1_4:44000101-44000120 | Msa0164490:exon | 45.0% | |
| TGGCGCATAGCACATAAACT+TGG | - | chr1_4:44001410-44001429 | Msa0164490:intron | 45.0% | |
| !! | TCGAAATCACCGTTTTTCCG+AGG | + | chr1_4:44001694-44001713 | None:intergenic | 45.0% |
| AGCTAGCTGTGGATTTAGAG+AGG | - | chr1_4:44001873-44001892 | Msa0164490:intron | 45.0% | |
| !! | CCTCTTGTGCCATTTCTTCA+AGG | + | chr1_4:44001910-44001929 | None:intergenic | 45.0% |
| CCTTGAAGAAATGGCACAAG+AGG | - | chr1_4:44001907-44001926 | Msa0164490:intron | 45.0% | |
| CTCCTCTACTCACTCCATTA+AGG | - | chr1_4:44000101-44000120 | Msa0164490:exon | 45.0% | |
| TGGCGCATAGCACATAAACT+TGG | - | chr1_4:44001410-44001429 | Msa0164490:intron | 45.0% | |
| !! | TCGAAATCACCGTTTTTCCG+AGG | + | chr1_4:44001694-44001713 | None:intergenic | 45.0% |
| AGCTAGCTGTGGATTTAGAG+AGG | - | chr1_4:44001873-44001892 | Msa0164490:intron | 45.0% | |
| !! | CCTCTTGTGCCATTTCTTCA+AGG | + | chr1_4:44001910-44001929 | None:intergenic | 45.0% |
| CCTTGAAGAAATGGCACAAG+AGG | - | chr1_4:44001907-44001926 | Msa0164490:intron | 45.0% | |
| AGCAAGATACCAGTGACAGC+AGG | + | chr1_4:44000320-44000339 | None:intergenic | 50.0% | |
| GGAACTGATTGTCCAGCTTG+AGG | + | chr1_4:44001649-44001668 | None:intergenic | 50.0% | |
| AGCAAGATACCAGTGACAGC+AGG | + | chr1_4:44000320-44000339 | None:intergenic | 50.0% | |
| GGAACTGATTGTCCAGCTTG+AGG | + | chr1_4:44001649-44001668 | None:intergenic | 50.0% | |
| ! | AGCAGGACGCAGGTTGACAA+AGG | + | chr1_4:44000303-44000322 | None:intergenic | 55.0% |
| ACACGCTTCACTTCGCGCTT+CGG | + | chr1_4:44001356-44001375 | None:intergenic | 55.0% | |
| AACCAGGATGGACCTCAAGC+TGG | - | chr1_4:44001634-44001653 | Msa0164490:intron | 55.0% | |
| ! | AGCAGGACGCAGGTTGACAA+AGG | + | chr1_4:44000303-44000322 | None:intergenic | 55.0% |
| ACACGCTTCACTTCGCGCTT+CGG | + | chr1_4:44001356-44001375 | None:intergenic | 55.0% | |
| AACCAGGATGGACCTCAAGC+TGG | - | chr1_4:44001634-44001653 | Msa0164490:intron | 55.0% | |
| AACCTGCGTCCTGCTGTCAC+TGG | - | chr1_4:44000308-44000327 | Msa0164490:intron | 60.0% | |
| TACCAGTGACAGCAGGACGC+AGG | + | chr1_4:44000313-44000332 | None:intergenic | 60.0% | |
| GTCCAGCTTGAGGTCCATCC+TGG | + | chr1_4:44001639-44001658 | None:intergenic | 60.0% | |
| AACCTGCGTCCTGCTGTCAC+TGG | - | chr1_4:44000308-44000327 | Msa0164490:intron | 60.0% | |
| TACCAGTGACAGCAGGACGC+AGG | + | chr1_4:44000313-44000332 | None:intergenic | 60.0% | |
| GTCCAGCTTGAGGTCCATCC+TGG | + | chr1_4:44001639-44001658 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43999960 | 44002109 | 43999960 | ID=Msa0164490;Name=Msa0164490 |
| chr1_4 | mRNA | 43999960 | 44002109 | 43999960 | ID=Msa0164490-mRNA-1;Parent=Msa0164490;Name=Msa0164490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=163|0.6|0.83|0.83|0.6|0.66|6|151|180 |
| chr1_4 | exon | 43999960 | 44000227 | 43999960 | ID=Msa0164490-mRNA-1:exon:12623;Parent=Msa0164490-mRNA-1 |
| chr1_4 | exon | 44000331 | 44000429 | 44000331 | ID=Msa0164490-mRNA-1:exon:12622;Parent=Msa0164490-mRNA-1 |
| chr1_4 | exon | 44000585 | 44000734 | 44000585 | ID=Msa0164490-mRNA-1:exon:12621;Parent=Msa0164490-mRNA-1 |
| chr1_4 | exon | 44000796 | 44000863 | 44000796 | ID=Msa0164490-mRNA-1:exon:12620;Parent=Msa0164490-mRNA-1 |
| chr1_4 | exon | 44001740 | 44001848 | 44001740 | ID=Msa0164490-mRNA-1:exon:12619;Parent=Msa0164490-mRNA-1 |
| chr1_4 | exon | 44001947 | 44002109 | 44001947 | ID=Msa0164490-mRNA-1:exon:12618;Parent=Msa0164490-mRNA-1 |
| chr1_4 | five_prime_UTR | 44001947 | 44002109 | 44001947 | ID=Msa0164490-mRNA-1:five_prime_utr;Parent=Msa0164490-mRNA-1 |
| chr1_4 | CDS | 44001740 | 44001848 | 44001740 | ID=Msa0164490-mRNA-1:cds;Parent=Msa0164490-mRNA-1 |
| chr1_4 | CDS | 44000796 | 44000863 | 44000796 | ID=Msa0164490-mRNA-1:cds;Parent=Msa0164490-mRNA-1 |
| chr1_4 | CDS | 44000585 | 44000734 | 44000585 | ID=Msa0164490-mRNA-1:cds;Parent=Msa0164490-mRNA-1 |
| chr1_4 | CDS | 44000331 | 44000429 | 44000331 | ID=Msa0164490-mRNA-1:cds;Parent=Msa0164490-mRNA-1 |
| chr1_4 | CDS | 44000111 | 44000227 | 44000111 | ID=Msa0164490-mRNA-1:cds;Parent=Msa0164490-mRNA-1 |
| chr1_4 | three_prime_UTR | 43999960 | 44000110 | 43999960 | ID=Msa0164490-mRNA-1:three_prime_utr;Parent=Msa0164490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
