AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170630 MtrunA17_Chr1g0188211 98.827 341 3 1 1 341 1 340 0.0 679
Msa0170630 MtrunA17_Chr6g0476061 53.779 344 114 13 1 326 1 317 1.96e-91 276
Msa0170630 MtrunA17_Chr7g0245841 54.035 285 99 8 1 272 1 266 3.10e-75 235
Msa0170630 MtrunA17_Chr4g0056761 45.690 348 126 9 17 337 17 328 2.31e-63 204
Msa0170630 MtrunA17_Chr8g0351761 43.243 333 120 8 1 291 1 306 1.11e-59 196
Msa0170630 MtrunA17_Chr1g0179461 39.550 311 147 10 49 341 69 356 1.76e-50 172
Msa0170630 MtrunA17_Chr5g0398621 44.151 265 98 9 14 264 3 231 6.16e-48 162
Msa0170630 MtrunA17_Chr8g0349091 42.412 257 121 8 49 302 89 321 1.52e-43 153
Msa0170630 MtrunA17_Chr7g0247431 41.026 234 116 4 48 278 88 302 1.61e-42 150
Msa0170630 MtrunA17_Chr5g0397551 43.363 226 104 7 37 261 59 261 1.71e-42 150
Msa0170630 MtrunA17_Chr4g0054661 45.413 218 83 6 42 249 66 257 1.03e-41 148
Msa0170630 MtrunA17_Chr6g0476241 42.534 221 95 5 46 266 117 305 5.43e-40 142
Msa0170630 MtrunA17_Chr8g0386741 39.035 228 121 5 48 274 96 306 4.51e-36 133
Msa0170630 MtrunA17_Chr1g0190011 50.427 117 53 3 134 248 109 222 1.19e-27 110
Msa0170630 MtrunA17_Chr7g0274821 53.719 121 52 2 130 249 139 256 1.32e-27 111
Msa0170630 MtrunA17_Chr4g0027371 47.287 129 64 2 124 248 9 137 2.09e-26 105
Msa0170630 MtrunA17_Chr4g0027351 50.382 131 57 3 115 243 4 128 3.92e-26 101
Msa0170630 MtrunA17_Chr4g0027331 49.242 132 59 3 115 242 4 131 7.29e-26 100
Msa0170630 MtrunA17_Chr1g0165101 37.443 219 97 6 47 248 83 278 5.93e-24 100
Msa0170630 MtrunA17_Chr3g0133051 41.463 123 69 3 134 253 101 223 1.13e-23 99.0
Msa0170630 MtrunA17_Chr4g0027301 44.355 124 65 2 124 243 16 139 6.94e-20 84.7
Msa0170630 MtrunA17_Chr5g0417581 41.912 136 62 4 129 248 14 148 1.32e-19 85.5
Msa0170630 MtrunA17_Chr5g0443311 38.172 186 89 6 69 249 27 191 9.61e-19 84.3
Msa0170630 MtrunA17_Chr3g0112131 43.966 116 61 2 134 248 106 218 1.24e-17 82.4
Msa0170630 MtrunA17_Chr5g0427311 36.552 145 83 6 126 263 72 214 1.64e-17 80.5
Msa0170630 MtrunA17_Chr5g0398531 37.654 162 81 4 88 248 97 239 2.40e-16 79.0
Msa0170630 MtrunA17_Chr1g0168121 40.171 117 66 2 133 248 68 181 2.53e-16 78.2
Msa0170630 MtrunA17_Chr7g0250031 46.610 118 55 3 134 248 84 196 2.67e-16 77.8
Msa0170630 MtrunA17_Chr4g0054651 44.068 118 58 3 134 248 103 215 9.88e-16 76.6
Msa0170630 MtrunA17_Chr8g0351651 37.736 159 79 4 91 248 86 225 1.18e-15 76.6
Msa0170630 MtrunA17_Chr5g0435681 42.241 116 63 2 134 248 116 228 9.59e-15 73.9
Msa0170630 MtrunA17_Chr3g0086021 39.252 107 58 2 146 248 118 221 9.28e-14 70.9
Msa0170630 MtrunA17_Chr1g0190051 40.517 116 65 2 134 248 101 213 2.92e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170630 AT4G25320.1 67.925 212 58 5 48 256 85 289 1.66e-84 261
Msa0170630 AT5G62260.1 64.545 220 64 7 49 261 76 288 1.83e-83 258
Msa0170630 AT5G62260.3 64.545 220 64 7 49 261 76 288 1.83e-83 258
Msa0170630 AT5G62260.2 62.150 214 67 7 49 255 76 282 5.46e-77 238
Msa0170630 AT4G12080.1 58.051 236 73 7 48 271 88 309 2.12e-75 236
Msa0170630 AT5G51590.1 59.016 244 63 6 34 251 64 296 3.36e-71 228
Msa0170630 AT4G22770.2 56.195 226 80 7 48 267 71 283 1.57e-58 192
Msa0170630 AT4G22770.1 56.195 226 80 7 48 267 71 283 1.57e-58 192
Msa0170630 AT4G00200.2 53.435 262 92 8 15 265 14 256 1.86e-56 186
Msa0170630 AT4G00200.1 53.435 262 92 8 15 265 14 256 1.86e-56 186
Msa0170630 AT2G33620.1 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0170630 AT2G33620.4 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0170630 AT2G33620.2 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0170630 AT2G33620.3 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0170630 AT2G45850.1 37.544 285 149 5 7 288 56 314 7.04e-45 157
Msa0170630 AT2G45850.2 37.544 285 149 5 7 288 56 314 7.04e-45 157
Msa0170630 AT1G63470.1 45.933 209 90 5 48 251 104 294 5.34e-44 155
Msa0170630 AT2G45850.3 40.000 240 118 4 7 243 56 272 1.13e-40 144
Msa0170630 AT4G17950.1 37.868 272 112 9 48 292 130 371 2.26e-39 144
Msa0170630 AT3G61310.1 46.377 207 86 6 45 249 97 280 3.37e-39 142
Msa0170630 AT5G46640.1 43.119 218 92 5 45 249 98 296 2.28e-37 138
Msa0170630 AT1G63480.2 40.385 208 92 6 48 251 98 277 9.13e-35 130
Msa0170630 AT1G63480.1 40.385 208 92 6 48 251 98 277 9.13e-35 130
Msa0170630 AT1G63480.5 40.385 208 92 6 48 251 92 271 9.42e-35 130
Msa0170630 AT1G63480.7 40.385 208 92 6 48 251 92 271 9.42e-35 130
Msa0170630 AT1G63480.4 40.385 208 92 6 48 251 92 271 9.42e-35 130
Msa0170630 AT1G63480.3 40.385 208 92 6 48 251 92 271 9.42e-35 130
Msa0170630 AT1G63480.6 40.385 208 92 6 48 251 92 271 9.42e-35 130
Msa0170630 AT3G04590.1 39.207 227 108 6 30 248 79 283 1.08e-32 124
Msa0170630 AT3G04590.2 39.207 227 108 6 30 248 79 283 6.01e-32 124
Msa0170630 AT2G36560.1 43.704 135 70 4 131 262 102 233 6.85e-24 102
Msa0170630 AT5G49700.1 37.778 135 78 4 134 262 83 217 2.73e-20 89.7
Msa0170630 AT2G42940.1 38.983 177 79 7 76 249 43 193 1.05e-18 84.7
Msa0170630 AT1G14490.2 37.500 144 83 5 126 262 41 184 1.51e-17 80.9
Msa0170630 AT1G14490.1 37.500 144 83 5 126 262 22 165 1.56e-17 80.5
Msa0170630 AT3G60870.1 40.517 116 63 3 134 248 86 196 3.77e-17 80.5
Msa0170630 AT4G14465.1 43.103 116 62 2 134 248 94 206 4.71e-16 77.8
Msa0170630 AT2G35270.1 39.130 161 74 5 91 248 78 217 8.17e-16 77.0
Msa0170630 AT3G55560.1 41.026 117 66 2 134 249 115 229 1.75e-14 73.6
Msa0170630 AT1G76500.1 35.200 125 68 3 134 248 99 220 1.48e-13 70.9
Msa0170630 AT4G17800.1 41.228 114 63 2 136 248 111 221 1.80e-13 70.5
Msa0170630 AT3G04570.1 38.710 124 64 3 134 248 107 227 2.30e-12 67.4
Msa0170630 AT5G28590.1 37.398 123 46 3 130 248 26 121 2.94e-12 65.9
Msa0170630 AT4G12050.1 40.171 117 65 3 134 248 145 258 9.52e-12 65.9
Msa0170630 AT4G22810.1 32.716 162 86 5 91 248 105 247 1.20e-11 65.5
Msa0170630 AT2G45430.1 34.969 163 82 5 91 248 89 232 1.66e-11 64.7
Msa0170630 AT4G35390.1 41.176 119 62 4 134 248 90 204 1.78e-11 64.7

Find 116 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTACCACAGAAATTT+TGG 0.113361 1_4:-54886395 None:intergenic
AAAATTGAAAGTATAAATTT+TGG 0.212639 1_4:-54886174 None:intergenic
ACTGTTCCAATTCAATTTCT+AGG 0.268350 1_4:+54886490 Msa0170630:five_prime_UTR
AAATAAAGTAATTAAATATT+CGG 0.279604 1_4:-54886227 None:intergenic
ATGTGTGATTTGTGAATTTA+GGG 0.286667 1_4:-54886318 None:intergenic
ATGGAAGAAAGAGAGAATTT+TGG 0.289936 1_4:+54886756 Msa0170630:CDS
CTTCGTCAATCGACTTCTTC+AGG 0.300773 1_4:+54889820 Msa0170630:CDS
CATGTGTGATTTGTGAATTT+AGG 0.300996 1_4:-54886319 None:intergenic
AATTCTATTCTCTATATATA+TGG 0.303409 1_4:+54890894 Msa0170630:three_prime_UTR
CCACCCAATACTCGGCCATC+TGG 0.308208 1_4:-54890221 None:intergenic
GATTTGTGAATTTAGGGTTT+TGG 0.311501 1_4:-54886312 None:intergenic
TCCATTCTCAGTTGGCATAA+AGG 0.318075 1_4:-54890153 None:intergenic
AGGGGAAGACCAAGGAAGTA+TGG 0.321600 1_4:+54886909 Msa0170630:CDS
AACGGTGCCGGTGTCGTTGC+CGG 0.338330 1_4:+54886866 Msa0170630:CDS
GGCCCAGATGGCCGAGTATT+GGG 0.346491 1_4:+54890218 Msa0170630:CDS
TTTGAGATTCTTTCCTTGTC+TGG 0.357599 1_4:+54890128 Msa0170630:CDS
AATGCAGCAGGTGTCATAAA+AGG 0.358990 1_4:-54890530 None:intergenic
TATGTGCTTACAGTGAATTC+TGG 0.363275 1_4:+54889579 Msa0170630:CDS
TCCTTTATGCCAACTGAGAA+TGG 0.367271 1_4:+54890152 Msa0170630:CDS
TGAAGACCTAGAAATTGAAT+TGG 0.368969 1_4:-54886496 None:intergenic
TGGTGGGATGAGTGTCTCTT+TGG 0.369450 1_4:+54890193 Msa0170630:CDS
TAACTTCAGAAAACAGAGTT+TGG 0.376776 1_4:-54886589 None:intergenic
AGGCCCAGATGGCCGAGTAT+TGG 0.385737 1_4:+54890217 Msa0170630:CDS
CTTGTAATTCCATTCTCAGT+TGG 0.403549 1_4:-54890161 None:intergenic
CCATCTGGCCCATACTTCCT+TGG 0.404209 1_4:-54886918 None:intergenic
TCAAGTTATTCTGTTGTGAA+TGG 0.409214 1_4:+54890965 Msa0170630:three_prime_UTR
GAGAGTTCTCAGCTTGGAAA+AGG 0.409824 1_4:+54887009 Msa0170630:CDS
GTCTCTTTGGCAGGCCCAGA+TGG 0.415568 1_4:+54890206 Msa0170630:CDS
GAAAGCGCAGTCACAGCTCC+AGG 0.416976 1_4:-54886951 None:intergenic
GCTGGTTTGCTTATAGCTTC+CGG 0.419761 1_4:+54890251 Msa0170630:CDS
CAGAGATCCTTTACCTGAAA+AGG 0.423451 1_4:+54890625 Msa0170630:CDS
GAAAACGTTTGAATCTTCAA+TGG 0.426164 1_4:+54886672 Msa0170630:five_prime_UTR
TCCAAGTTGTTATCAATCCT+TGG 0.429223 1_4:-54886831 None:intergenic
TTCTTCTTCAACGCTGTCTC+CGG 0.430286 1_4:-54886885 None:intergenic
GTTTAGTGTTAGATGTTAGT+TGG 0.439419 1_4:+54890764 Msa0170630:three_prime_UTR
AACGGAATCGACGATGAAAT+CGG 0.441018 1_4:-54886981 None:intergenic
GATTTCTTCATAGATTCAAC+AGG 0.446009 1_4:-54887044 None:intergenic
TTCGTCAATCGACTTCTTCA+GGG 0.447507 1_4:+54889821 Msa0170630:CDS
ATGCTATAATTAAGTGTGAT+TGG 0.454428 1_4:+54890917 Msa0170630:three_prime_UTR
TGCATTCATTAGGTCGTTGT+GGG 0.460179 1_4:+54890365 Msa0170630:intron
GGAATTACAAGAAGCAGATC+TGG 0.463594 1_4:+54890173 Msa0170630:CDS
CCAGGAGCAGGCTTACCATC+TGG 0.464856 1_4:-54886933 None:intergenic
CCAGATGGTAAGCCTGCTCC+TGG 0.466966 1_4:+54886933 Msa0170630:CDS
CACCCAATACTCGGCCATCT+GGG 0.474541 1_4:-54890220 None:intergenic
AAAACGTTTGAATCTTCAAT+GGG 0.476944 1_4:+54886673 Msa0170630:five_prime_UTR
GCAGTCACAGCTCCAGGAGC+AGG 0.477303 1_4:-54886945 None:intergenic
GTGTCTAATGAAGTAAGTTT+TGG 0.480216 1_4:+54890497 Msa0170630:CDS
GTATTGGGTGGTGGACTCGC+TGG 0.482204 1_4:+54890233 Msa0170630:CDS
GTTTGAATCTTCAATGGGTA+GGG 0.483701 1_4:+54886678 Msa0170630:five_prime_UTR
TATTGCACGTGATCCTTGTT+GGG 0.485487 1_4:-54889758 None:intergenic
CGACACCGGCACCGTTGCCA+TGG 0.488569 1_4:-54886859 None:intergenic
GGGATGAGTGTCTCTTTGGC+AGG 0.488739 1_4:+54890197 Msa0170630:CDS
TAAACTCACCTCATACGTTA+AGG 0.491146 1_4:-54889848 None:intergenic
TCATCGTCGATTCCGTTGAC+TGG 0.493414 1_4:+54886987 Msa0170630:CDS
CGTTTGAATCTTCAATGGGT+AGG 0.496496 1_4:+54886677 Msa0170630:five_prime_UTR
TCATTGTAGCAAATAGATGT+AGG 0.498893 1_4:+54890839 Msa0170630:three_prime_UTR
TTTGGTGCTGTGAATGTAGT+GGG 0.499641 1_4:+54886774 Msa0170630:CDS
AAAATGGTTCACGTCCGTCT+TGG 0.503428 1_4:-54886146 None:intergenic
CGAGTCCACCACCCAATACT+CGG 0.505760 1_4:-54890229 None:intergenic
TCTTCTTGATGAAATGCAGC+AGG 0.509824 1_4:-54890542 None:intergenic
AGCAAAACAGCAAGAAGCAG+AGG 0.510263 1_4:+54890414 Msa0170630:CDS
ACAACAATGCTCAAGACTCT+AGG 0.534120 1_4:+54890582 Msa0170630:CDS
AGAGTTCTCAGCTTGGAAAA+GGG 0.534719 1_4:+54887010 Msa0170630:CDS
ATATTGCACGTGATCCTTGT+TGG 0.537010 1_4:-54889759 None:intergenic
TATAGCTTCCGGTCCCGTGC+AGG 0.538508 1_4:+54890262 Msa0170630:CDS
ATATGCATTCTCTCTGCCAC+TGG 0.540565 1_4:+54889778 Msa0170630:CDS
ATCTCTGTCATCAGCAGATG+AGG 0.549628 1_4:-54890609 None:intergenic
GATGGCCGAGTATTGGGTGG+TGG 0.550417 1_4:+54890224 Msa0170630:CDS
GTGCATTCATTAGGTCGTTG+TGG 0.552620 1_4:+54890364 Msa0170630:intron
TCAGCTTGGAAAAGGGGTAG+AGG 0.552867 1_4:+54887017 Msa0170630:CDS
GAGTTCTCAGCTTGGAAAAG+GGG 0.553297 1_4:+54887011 Msa0170630:CDS
CCAAGGAAGTATGGGCCAGA+TGG 0.554974 1_4:+54886918 Msa0170630:CDS
AGACAGCGTTGAAGAAGAAG+AGG 0.556951 1_4:+54886889 Msa0170630:CDS
TCCAAGGATTGATAACAACT+TGG 0.557972 1_4:+54886830 Msa0170630:CDS
AGACAACCACAATTCTGTCC+TGG 0.562239 1_4:-54890723 None:intergenic
GCTGTCTCCGGCAACGACAC+CGG 0.564966 1_4:-54886873 None:intergenic
TGATGATTAACGTGTGGAGG+AGG 0.565380 1_4:-54890473 None:intergenic
GGGGAAGACCAAGGAAGTAT+GGG 0.568941 1_4:+54886910 Msa0170630:CDS
TGAGCTTTCAAGCTGCTCCA+AGG 0.570496 1_4:+54886814 Msa0170630:CDS
AAGCACATAAGCTGTGAAGT+TGG 0.573504 1_4:-54889565 None:intergenic
GAGGGAATTGCATACTCAGT+AGG 0.575333 1_4:+54889540 Msa0170630:CDS
CATTGTAGCAAATAGATGTA+GGG 0.575767 1_4:+54890840 Msa0170630:three_prime_UTR
GTAGGTGGAGGTGTAAGTGA+GGG 0.576701 1_4:+54889522 Msa0170630:CDS
AACTTACCAGGACAGAATTG+TGG 0.576879 1_4:+54890717 Msa0170630:three_prime_UTR
GACAGCGTTGAAGAAGAAGA+GGG 0.578273 1_4:+54886890 Msa0170630:CDS
TGTAGGTGGAGGTGTAAGTG+AGG 0.583447 1_4:+54889521 Msa0170630:CDS
TAAATAATACCTTGCACAGG+TGG 0.587655 1_4:-54887092 None:intergenic
GCTGTCAAAATTAACTTACC+AGG 0.589328 1_4:+54890705 Msa0170630:three_prime_UTR
CAGCTTGGAAAAGGGGTAGA+GGG 0.590560 1_4:+54887018 Msa0170630:CDS
ACTTTATTAAATTTCCAAGA+CGG 0.593115 1_4:+54886132 None:intergenic
TTTGAAAGTCCACCTGTGCA+AGG 0.595210 1_4:+54887083 Msa0170630:CDS
GCTGAGAACTCTCCAGTCAA+CGG 0.597272 1_4:-54886999 None:intergenic
GGAGCAGCTTGAAAGCTCAC+AGG 0.597686 1_4:-54886810 None:intergenic
AAACAGCAAGAAGCAGAGGG+TGG 0.602793 1_4:+54890418 Msa0170630:CDS
GAATGTAGTGGGTGGTAATG+AGG 0.604474 1_4:+54886785 Msa0170630:CDS
TGGCATAAAGGAACCAGACA+AGG 0.611075 1_4:-54890141 None:intergenic
TCGTCAATCGACTTCTTCAG+GGG 0.612115 1_4:+54889822 Msa0170630:CDS
AAAATTATGTCCTCCCAACA+AGG 0.612526 1_4:+54889745 Msa0170630:CDS
TGACTGGAGAGTTCTCAGCT+TGG 0.612765 1_4:+54887003 Msa0170630:CDS
TGCACGTGATCCTTGTTGGG+AGG 0.616462 1_4:-54889755 None:intergenic
CTATAAATAATACCTTGCAC+AGG 0.617295 1_4:-54887095 None:intergenic
ATTACAAGAAGCAGATCTGG+TGG 0.630094 1_4:+54890176 Msa0170630:CDS
GCAAAACAGCAAGAAGCAGA+GGG 0.637562 1_4:+54890415 Msa0170630:CDS
AACATTTGAAATTGTGCCAG+TGG 0.637698 1_4:-54889794 None:intergenic
CCAGATGGCCGAGTATTGGG+TGG 0.641351 1_4:+54890221 Msa0170630:CDS
ACATGATGATTAACGTGTGG+AGG 0.647905 1_4:-54890476 None:intergenic
GGTGCTGTGAATGTAGTGGG+TGG 0.656148 1_4:+54886777 Msa0170630:CDS
ATCGACGATGAAATCGGCAT+AGG 0.666533 1_4:-54886975 None:intergenic
GACACATGATGATTAACGTG+TGG 0.667288 1_4:-54890479 None:intergenic
TTACAAGAAGCAGATCTGGT+GGG 0.675023 1_4:+54890177 Msa0170630:CDS
AGAAGAAGAGGGGAAGACCA+AGG 0.680559 1_4:+54886901 Msa0170630:CDS
ACAGCGTTGAAGAAGAAGAG+GGG 0.683644 1_4:+54886891 Msa0170630:CDS
GCTTACAGTGAATTCTGGCG+AGG 0.694276 1_4:+54889584 Msa0170630:CDS
CGTCAATCGACTTCTTCAGG+GGG 0.699414 1_4:+54889823 Msa0170630:CDS
AGAGAATAGAATTCTTAACA+AGG 0.710713 1_4:-54890884 None:intergenic
AGATGAACAAAACAACCACG+TGG 0.758321 1_4:-54890799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTATATTTAA+TGG + chr1_4:54889352-54889371 Msa0170630:intron 0.0%
!!! ATTTTATTTTTATATTTAAT+GGG + chr1_4:54889353-54889372 Msa0170630:intron 0.0%
!!! ATAAATTTTGGTTAATAAAA+TGG - chr1_4:54886165-54886184 None:intergenic 10.0%
!!! AAAATTGAAAGTATAAATTT+TGG - chr1_4:54886177-54886196 None:intergenic 10.0%
!!! AAAATGAATTTTTTTCAAAA+GGG - chr1_4:54886623-54886642 None:intergenic 10.0%
!!! AAAAATGAATTTTTTTCAAA+AGG - chr1_4:54886624-54886643 None:intergenic 10.0%
!! AATGTTAAAAAAAAAAACAA+AGG - chr1_4:54888138-54888157 None:intergenic 10.0%
!! TTAAGTATTATGTAAATTAT+TGG - chr1_4:54888312-54888331 None:intergenic 10.0%
!!! ATAAAGTTGATAAAAAAATG+AGG - chr1_4:54886271-54886290 None:intergenic 15.0%
!! TAAGAAAAAAATACAAACTT+TGG - chr1_4:54886357-54886376 None:intergenic 15.0%
!!! AAATGAATTTTTTTCAAAAG+GGG - chr1_4:54886622-54886641 None:intergenic 15.0%
!!! TTAAGCTAAATTTTGAATTT+TGG + chr1_4:54886702-54886721 Msa0170630:five_prime_UTR 15.0%
!!! TAAGCTAAATTTTGAATTTT+GGG + chr1_4:54886703-54886722 Msa0170630:five_prime_UTR 15.0%
!! ACGAAAATTATAAGAAAAAA+AGG - chr1_4:54887179-54887198 None:intergenic 15.0%
!! ATTAAGAACAAGTTAAAATT+TGG - chr1_4:54887837-54887856 None:intergenic 15.0%
!!! TAAAGAATCTTCTAAAATTA+GGG + chr1_4:54889055-54889074 Msa0170630:intron 15.0%
!!! TTTATTTTTGTGAACTATAA+AGG + chr1_4:54889410-54889429 Msa0170630:intron 15.0%
!!! TAGTTTTTGAATTTCATTTT+TGG + chr1_4:54889660-54889679 Msa0170630:intron 15.0%
!! AATTCTATTCTCTATATATA+TGG + chr1_4:54890894-54890913 Msa0170630:three_prime_UTR 15.0%
!!! AATTTTTTCCAAAATTTCTG+TGG + chr1_4:54886387-54886406 Msa0170630:five_prime_UTR 20.0%
!!! TGAAATTTTTAGTGTGATTA+AGG + chr1_4:54886646-54886665 Msa0170630:five_prime_UTR 20.0%
!!! GAAATTTTTAGTGTGATTAA+GGG + chr1_4:54886647-54886666 Msa0170630:five_prime_UTR 20.0%
!!! AAGCTAAATTTTGAATTTTG+GGG + chr1_4:54886704-54886723 Msa0170630:five_prime_UTR 20.0%
!!! TTCTTTGATTTGCATAAAAA+TGG + chr1_4:54886737-54886756 Msa0170630:exon 20.0%
!! TATGTTGAAAAAATAACAAG+AGG - chr1_4:54887325-54887344 None:intergenic 20.0%
!!! TTTTTGAGTTCTAATTGTTA+TGG + chr1_4:54887375-54887394 Msa0170630:intron 20.0%
!! TTGTGATAGAGTTTATATTT+AGG + chr1_4:54887452-54887471 Msa0170630:intron 20.0%
!! TGTGATAGAGTTTATATTTA+GGG + chr1_4:54887453-54887472 Msa0170630:intron 20.0%
!! AGTATTGCATTATATGATAA+TGG + chr1_4:54887632-54887651 Msa0170630:intron 20.0%
!!! TTTTAACTTGTTCTTAATCA+TGG + chr1_4:54887839-54887858 Msa0170630:intron 20.0%
!!! ATTTTTTTGTCTTAATCATC+GGG - chr1_4:54887894-54887913 None:intergenic 20.0%
!!! CATTTTTTTGTCTTAATCAT+CGG - chr1_4:54887895-54887914 None:intergenic 20.0%
!! TAATAACTATGCCAAAAAAA+TGG - chr1_4:54888172-54888191 None:intergenic 20.0%
!!! GTAAAGAATCTTCTAAAATT+AGG + chr1_4:54889054-54889073 Msa0170630:intron 20.0%
!!! CTTTTATATAATGAATGAAC+TGG + chr1_4:54889379-54889398 Msa0170630:intron 20.0%
!! AACTACATAAAATACGTATA+AGG - chr1_4:54889502-54889521 None:intergenic 20.0%
!! ATAAAATATGATAAGAGGAA+AGG - chr1_4:54889619-54889638 None:intergenic 20.0%
!!! TCCTCTTATCATATTTTATA+TGG + chr1_4:54889620-54889639 Msa0170630:intron 20.0%
!! ACCATATAAAATATGATAAG+AGG - chr1_4:54889624-54889643 None:intergenic 20.0%
!! ATGTGTGATTTGTGAATTTA+GGG - chr1_4:54886321-54886340 None:intergenic 25.0%
!! TGAAATTACCACAGAAATTT+TGG - chr1_4:54886398-54886417 None:intergenic 25.0%
!!! ATTTTTTTGTGTTCTTGCAA+TGG + chr1_4:54886419-54886438 Msa0170630:five_prime_UTR 25.0%
! AAAACGTTTGAATCTTCAAT+GGG + chr1_4:54886673-54886692 Msa0170630:five_prime_UTR 25.0%
! AGTGGAATTCATTATTATTC+AGG + chr1_4:54887263-54887282 Msa0170630:intron 25.0%
! GTGATAGAGTTTATATTTAG+GGG + chr1_4:54887454-54887473 Msa0170630:intron 25.0%
! TGATAGAGTTTATATTTAGG+GGG + chr1_4:54887455-54887474 Msa0170630:intron 25.0%
! TCTTCTTACAAAGGAAAATA+AGG - chr1_4:54887607-54887626 None:intergenic 25.0%
!! TACTTTTCTTCTTCTTACAA+AGG - chr1_4:54887616-54887635 None:intergenic 25.0%
!!! GCATTATATGATAATGGAAA+CGG + chr1_4:54887638-54887657 Msa0170630:intron 25.0%
! TCTTCTTGTAAAAAATAGAG+TGG + chr1_4:54887918-54887937 Msa0170630:intron 25.0%
!!! TCCATCAGTATTTTAATCAA+AGG + chr1_4:54887951-54887970 Msa0170630:intron 25.0%
!!! TTTTGGTTGCATATAGTATA+AGG + chr1_4:54888008-54888027 Msa0170630:intron 25.0%
! AGAGATTTATAGAACGTATT+AGG + chr1_4:54888044-54888063 Msa0170630:intron 25.0%
!! TATTAAATCCCTCATTTTGT+TGG - chr1_4:54888096-54888115 None:intergenic 25.0%
!!! TGTTTGTTTTACGAGTTTTT+TGG - chr1_4:54888400-54888419 None:intergenic 25.0%
!!! GGTTTTATTCGTCTAATATT+GGG - chr1_4:54888478-54888497 None:intergenic 25.0%
! TTCAGAAAAATGTGGTATTA+GGG - chr1_4:54888510-54888529 None:intergenic 25.0%
! TTTCAGAAAAATGTGGTATT+AGG - chr1_4:54888511-54888530 None:intergenic 25.0%
! CTAAAAGTTTCAGAAAAATG+TGG - chr1_4:54888518-54888537 None:intergenic 25.0%
! CAAAGATCATTACTTAATAC+TGG + chr1_4:54888643-54888662 Msa0170630:intron 25.0%
! ATGTTGCAAGATAAAGAAAA+GGG - chr1_4:54888678-54888697 None:intergenic 25.0%
! GGTTCTTTAATTGTTTAAGA+GGG + chr1_4:54888823-54888842 Msa0170630:intron 25.0%
!! TCTTTGAAGGTTATGAATTA+AGG + chr1_4:54888857-54888876 Msa0170630:intron 25.0%
! TAATTGTGTTCCATACTTTA+CGG - chr1_4:54888892-54888911 None:intergenic 25.0%
! GTATGGAACACAATTATTTA+TGG + chr1_4:54888896-54888915 Msa0170630:intron 25.0%
! AACACAATTATTTATGGACT+CGG + chr1_4:54888902-54888921 Msa0170630:intron 25.0%
! ATTAAATACATGAATTGAGC+TGG + chr1_4:54889147-54889166 Msa0170630:intron 25.0%
! TTTCTATTATTGAAGTCTCT+TGG + chr1_4:54889239-54889258 Msa0170630:intron 25.0%
!! GTAATAAAGAAATTCTAGAG+AGG - chr1_4:54889441-54889460 None:intergenic 25.0%
!! TACGTATTTTATGTAGTTGT+AGG + chr1_4:54889504-54889523 Msa0170630:intron 25.0%
! TTTATATGGTATAGATCAAG+TGG + chr1_4:54889634-54889653 Msa0170630:intron 25.0%
!! CATTTGTTTCTCTATCATAT+TGG + chr1_4:54889907-54889926 Msa0170630:intron 25.0%
! AGAGAATAGAATTCTTAACA+AGG - chr1_4:54890887-54890906 None:intergenic 25.0%
! ATGCTATAATTAAGTGTGAT+TGG + chr1_4:54890917-54890936 Msa0170630:three_prime_UTR 25.0%
!! GATTTGTGAATTTAGGGTTT+TGG - chr1_4:54886315-54886334 None:intergenic 30.0%
! CATGTGTGATTTGTGAATTT+AGG - chr1_4:54886322-54886341 None:intergenic 30.0%
ACTGTTCCAATTCAATTTCT+AGG + chr1_4:54886490-54886509 Msa0170630:five_prime_UTR 30.0%
TGAAGACCTAGAAATTGAAT+TGG - chr1_4:54886499-54886518 None:intergenic 30.0%
TAACTTCAGAAAACAGAGTT+TGG - chr1_4:54886592-54886611 None:intergenic 30.0%
GAAAACGTTTGAATCTTCAA+TGG + chr1_4:54886672-54886691 Msa0170630:five_prime_UTR 30.0%
! ATGGAAGAAAGAGAGAATTT+TGG + chr1_4:54886756-54886775 Msa0170630:CDS 30.0%
! TAACAACTTGGATTTTTCCA+TGG + chr1_4:54886842-54886861 Msa0170630:CDS 30.0%
GATTTCTTCATAGATTCAAC+AGG - chr1_4:54887047-54887066 None:intergenic 30.0%
CTATAAATAATACCTTGCAC+AGG - chr1_4:54887098-54887117 None:intergenic 30.0%
! TGACTGTTACTATGTTTCTA+TGG + chr1_4:54887199-54887218 Msa0170630:intron 30.0%
! TTGAGTTCTAATTGTTATGG+AGG + chr1_4:54887378-54887397 Msa0170630:intron 30.0%
CTTTGTATTCAGATCTGAAA+AGG - chr1_4:54887509-54887528 None:intergenic 30.0%
AGGTTGTATTTGTTCTGTTT+AGG + chr1_4:54887566-54887585 Msa0170630:intron 30.0%
GGTTGTATTTGTTCTGTTTA+GGG + chr1_4:54887567-54887586 Msa0170630:intron 30.0%
AAACGGTTAGAGTAATTGAA+GGG + chr1_4:54887655-54887674 Msa0170630:intron 30.0%
ACTATTAGACTCATTCTAGT+TGG - chr1_4:54887682-54887701 None:intergenic 30.0%
ATTATTCAAACCAACCAACA+AGG - chr1_4:54887779-54887798 None:intergenic 30.0%
!! TGTTGGTTGGTTTGAATAAT+AGG + chr1_4:54887779-54887798 Msa0170630:intron 30.0%
TGAATAATAGGCTGCAAAAT+AGG + chr1_4:54887791-54887810 Msa0170630:intron 30.0%
ATTATTAAGAGCAATCTCCT+AGG + chr1_4:54887866-54887885 Msa0170630:intron 30.0%
GCCTTTGATTAAAATACTGA+TGG - chr1_4:54887955-54887974 None:intergenic 30.0%
! AAGTTTGCAGAAGAGATTTT+TGG + chr1_4:54887991-54888010 Msa0170630:intron 30.0%
CATATAGTATAAGGTATGCT+TGG + chr1_4:54888017-54888036 Msa0170630:intron 30.0%
CTCTGAATATAGCATGTTTA+GGG - chr1_4:54888226-54888245 None:intergenic 30.0%
TCTCTGAATATAGCATGTTT+AGG - chr1_4:54888227-54888246 None:intergenic 30.0%
!!! GGGTTTTATTCGTCTAATAT+TGG - chr1_4:54888479-54888498 None:intergenic 30.0%
!!! TTTCTGAAACTTTTAGTTGC+TGG + chr1_4:54888522-54888541 Msa0170630:intron 30.0%
GATGTTGCAAGATAAAGAAA+AGG - chr1_4:54888679-54888698 None:intergenic 30.0%
!! GAATTGTGTGTTGTTTAACA+TGG + chr1_4:54888722-54888741 Msa0170630:intron 30.0%
TTCTATATCTGAACAAGATC+TGG + chr1_4:54888801-54888820 Msa0170630:intron 30.0%
TCTATATCTGAACAAGATCT+GGG + chr1_4:54888802-54888821 Msa0170630:intron 30.0%
GGGTTCTTTAATTGTTTAAG+AGG + chr1_4:54888822-54888841 Msa0170630:intron 30.0%
CTTTAATTGTTTAAGAGGGT+TGG + chr1_4:54888827-54888846 Msa0170630:intron 30.0%
! TCTAAAATTAGGGCCATAAT+AGG + chr1_4:54889065-54889084 Msa0170630:intron 30.0%
CTAAAATTAGGGCCATAATA+GGG + chr1_4:54889066-54889085 Msa0170630:intron 30.0%
AACAATACATGGCAGTAAAT+TGG - chr1_4:54889095-54889114 None:intergenic 30.0%
GGAGTTAAGACTTTCAAATA+TGG + chr1_4:54889168-54889187 Msa0170630:intron 30.0%
GAAGAAGCTTATGTATCATT+CGG - chr1_4:54889318-54889337 None:intergenic 30.0%
GTATAAGGAAGATCAATTGA+TGG - chr1_4:54889487-54889506 None:intergenic 30.0%
! GTATTTTATGTAGTTGTAGG+TGG + chr1_4:54889507-54889526 Msa0170630:intron 30.0%
TAAATGCTAAAATGAGCATG+TGG - chr1_4:54889690-54889709 None:intergenic 30.0%
CATATAAACGAAGGACTTTA+TGG - chr1_4:54889941-54889960 None:intergenic 30.0%
CATATAATACAAGACAGACA+TGG - chr1_4:54889967-54889986 None:intergenic 30.0%
!!! AATTTTGAGTTTCCCTTCTA+TGG + chr1_4:54890017-54890036 Msa0170630:intron 30.0%
TTCAATTTCATTTATGCCCT+TGG + chr1_4:54890084-54890103 Msa0170630:intron 30.0%
! GTGTCTAATGAAGTAAGTTT+TGG + chr1_4:54890497-54890516 Msa0170630:CDS 30.0%
!! TCTAATGAAGTAAGTTTTGG+TGG + chr1_4:54890500-54890519 Msa0170630:CDS 30.0%
GTTTAGTGTTAGATGTTAGT+TGG + chr1_4:54890764-54890783 Msa0170630:three_prime_UTR 30.0%
TCATTGTAGCAAATAGATGT+AGG + chr1_4:54890839-54890858 Msa0170630:three_prime_UTR 30.0%
CATTGTAGCAAATAGATGTA+GGG + chr1_4:54890840-54890859 Msa0170630:three_prime_UTR 30.0%
TCAAGTTATTCTGTTGTGAA+TGG + chr1_4:54890965-54890984 Msa0170630:three_prime_UTR 30.0%
!! ATTTAGGGTTTTGGTGGAAA+AGG - chr1_4:54886306-54886325 None:intergenic 35.0%
!! TTGTGAATTTAGGGTTTTGG+TGG - chr1_4:54886312-54886331 None:intergenic 35.0%
! TCACAATACTGCGATTTTCT+CGG + chr1_4:54886455-54886474 Msa0170630:five_prime_UTR 35.0%
GTTTGAATCTTCAATGGGTA+GGG + chr1_4:54886678-54886697 Msa0170630:five_prime_UTR 35.0%
! TCCAAGGATTGATAACAACT+TGG + chr1_4:54886830-54886849 Msa0170630:CDS 35.0%
TCCAAGTTGTTATCAATCCT+TGG - chr1_4:54886834-54886853 None:intergenic 35.0%
TAAATAATACCTTGCACAGG+TGG - chr1_4:54887095-54887114 None:intergenic 35.0%
!! CAGTTTTTGAGAAATGAGAG+TGG + chr1_4:54887245-54887264 Msa0170630:intron 35.0%
TAGAGTTTATATTTAGGGGG+TGG + chr1_4:54887458-54887477 Msa0170630:intron 35.0%
AGAGTTTATATTTAGGGGGT+GGG + chr1_4:54887459-54887478 Msa0170630:intron 35.0%
TGAAAAGGAATCTCAGCTAA+GGG - chr1_4:54887494-54887513 None:intergenic 35.0%
AGATCTGAATACAAAGTGTG+AGG + chr1_4:54887513-54887532 Msa0170630:intron 35.0%
!! GATGTGGATATTTTTGTGGT+TGG + chr1_4:54887538-54887557 Msa0170630:intron 35.0%
!! TATTTTTGTGGTTGGAAGTG+AGG + chr1_4:54887546-54887565 Msa0170630:intron 35.0%
GAAACGGTTAGAGTAATTGA+AGG + chr1_4:54887654-54887673 Msa0170630:intron 35.0%
CATCTTACTAATCACCTTGT+TGG + chr1_4:54887762-54887781 Msa0170630:intron 35.0%
TTACTAATCACCTTGTTGGT+TGG + chr1_4:54887766-54887785 Msa0170630:intron 35.0%
GAAATTTCTGTGTGAAGAAG+AGG + chr1_4:54888069-54888088 Msa0170630:intron 35.0%
!!! CACATGTTCTGCCATTTTTT+TGG + chr1_4:54888158-54888177 Msa0170630:intron 35.0%
! GTGGTATTAGGGATGTTTTA+GGG - chr1_4:54888499-54888518 None:intergenic 35.0%
! TGTGGTATTAGGGATGTTTT+AGG - chr1_4:54888500-54888519 None:intergenic 35.0%
! TATTTATGGACTCGGTTATG+TGG + chr1_4:54888910-54888929 Msa0170630:intron 35.0%
AAAGGATGAGGTAGATTTGA+AGG - chr1_4:54889280-54889299 None:intergenic 35.0%
! CTACCTCATCCTTTAAAAGA+TGG + chr1_4:54889286-54889305 Msa0170630:intron 35.0%
!! GATCCATCTTTTAAAGGATG+AGG - chr1_4:54889292-54889311 None:intergenic 35.0%
ATCAATTGATGGAGAAAGAC+AGG - chr1_4:54889476-54889495 None:intergenic 35.0%
! TTTTATGTAGTTGTAGGTGG+AGG + chr1_4:54889510-54889529 Msa0170630:intron 35.0%
TATGTGCTTACAGTGAATTC+TGG + chr1_4:54889579-54889598 Msa0170630:CDS 35.0%
! TTGGGAGGACATAATTTTCA+TGG - chr1_4:54889743-54889762 None:intergenic 35.0%
AAAATTATGTCCTCCCAACA+AGG + chr1_4:54889745-54889764 Msa0170630:CDS 35.0%
! AACATTTGAAATTGTGCCAG+TGG - chr1_4:54889797-54889816 None:intergenic 35.0%
TAAACTCACCTCATACGTTA+AGG - chr1_4:54889851-54889870 None:intergenic 35.0%
TCACTAACTCCATACTGAAT+CGG + chr1_4:54890047-54890066 Msa0170630:intron 35.0%
!! TATGTAACACCGATTCAGTA+TGG - chr1_4:54890059-54890078 None:intergenic 35.0%
! TTTGAGATTCTTTCCTTGTC+TGG + chr1_4:54890128-54890147 Msa0170630:CDS 35.0%
CTTGTAATTCCATTCTCAGT+TGG - chr1_4:54890164-54890183 None:intergenic 35.0%
CACTATGTTGTGCATTCATT+AGG + chr1_4:54890355-54890374 Msa0170630:intron 35.0%
!!! TTAGAGTCCTTTTCAGGTAA+AGG - chr1_4:54890635-54890654 None:intergenic 35.0%
! CTATGATTAGAGTCCTTTTC+AGG - chr1_4:54890641-54890660 None:intergenic 35.0%
GCTGTCAAAATTAACTTACC+AGG + chr1_4:54890705-54890724 Msa0170630:three_prime_UTR 35.0%
CGTTTGAATCTTCAATGGGT+AGG + chr1_4:54886677-54886696 Msa0170630:five_prime_UTR 40.0%
!!! TTTTGGTGCTGTGAATGTAG+TGG + chr1_4:54886773-54886792 Msa0170630:CDS 40.0%
!! TTTGGTGCTGTGAATGTAGT+GGG + chr1_4:54886774-54886793 Msa0170630:CDS 40.0%
! CTTGGATTTTTCCATGGCAA+CGG + chr1_4:54886848-54886867 Msa0170630:CDS 40.0%
AACGGAATCGACGATGAAAT+CGG - chr1_4:54886984-54887003 None:intergenic 40.0%
AGAGTTCTCAGCTTGGAAAA+GGG + chr1_4:54887010-54887029 Msa0170630:CDS 40.0%
GAGTTTATATTTAGGGGGTG+GGG + chr1_4:54887460-54887479 Msa0170630:intron 40.0%
AGTTTATATTTAGGGGGTGG+GGG + chr1_4:54887461-54887480 Msa0170630:intron 40.0%
CTGAAAAGGAATCTCAGCTA+AGG - chr1_4:54887495-54887514 None:intergenic 40.0%
TCTGAATACAAAGTGTGAGG+TGG + chr1_4:54887516-54887535 Msa0170630:intron 40.0%
!! GGTGGATGTGGATATTTTTG+TGG + chr1_4:54887534-54887553 Msa0170630:intron 40.0%
! GCTAGTTTGTCATGTAGAAC+TGG + chr1_4:54887704-54887723 Msa0170630:intron 40.0%
AGAAGAGGACCAACAAAATG+AGG + chr1_4:54888084-54888103 Msa0170630:intron 40.0%
GAAGAGGACCAACAAAATGA+GGG + chr1_4:54888085-54888104 Msa0170630:intron 40.0%
! ATTGGAAGTATGTAGCAGAG+CGG - chr1_4:54888599-54888618 None:intergenic 40.0%
CTGCTACATACTTCCAATAG+TGG + chr1_4:54888601-54888620 Msa0170630:intron 40.0%
AATGATCTTTGTCCCTTCTC+CGG - chr1_4:54888634-54888653 None:intergenic 40.0%
ACATCCAAGTAAGACGAATG+CGG + chr1_4:54888694-54888713 Msa0170630:intron 40.0%
TCCATACTTTACGGCTTTCT+AGG - chr1_4:54888883-54888902 None:intergenic 40.0%
CTGCACTATGTCATAGTATG+TGG + chr1_4:54888951-54888970 Msa0170630:intron 40.0%
TGACTACACAATGTTGATCC+AGG + chr1_4:54889028-54889047 Msa0170630:intron 40.0%
GACTACACAATGTTGATCCA+GGG + chr1_4:54889029-54889048 Msa0170630:intron 40.0%
TAGAAGATTCTTTACTGCCC+TGG - chr1_4:54889049-54889068 None:intergenic 40.0%
AAATTAGGGCCATAATAGGG+TGG + chr1_4:54889069-54889088 Msa0170630:intron 40.0%
GTAAATTGGCCACCCTATTA+TGG - chr1_4:54889081-54889100 None:intergenic 40.0%
TCACACATCGCAACAATACA+TGG - chr1_4:54889106-54889125 None:intergenic 40.0%
ATGTATTGTTGCGATGTGTG+AGG + chr1_4:54889105-54889124 Msa0170630:intron 40.0%
! CGGTCAGATCCATCTTTTAA+AGG - chr1_4:54889298-54889317 None:intergenic 40.0%
AAGCACATAAGCTGTGAAGT+TGG - chr1_4:54889568-54889587 None:intergenic 40.0%
! GATTTTCTATCCTCTGTCTC+AGG + chr1_4:54889711-54889730 Msa0170630:intron 40.0%
TATTGCACGTGATCCTTGTT+GGG - chr1_4:54889761-54889780 None:intergenic 40.0%
ATATTGCACGTGATCCTTGT+TGG - chr1_4:54889762-54889781 None:intergenic 40.0%
! TTCGTCAATCGACTTCTTCA+GGG + chr1_4:54889821-54889840 Msa0170630:CDS 40.0%
ACATGGCTGCATATAAACGA+AGG - chr1_4:54889950-54889969 None:intergenic 40.0%
! AGTGAGTCGATTCCATAGAA+GGG - chr1_4:54890032-54890051 None:intergenic 40.0%
! TAGTGAGTCGATTCCATAGA+AGG - chr1_4:54890033-54890052 None:intergenic 40.0%
TCATTTATGCCCTTGGTGAA+TGG + chr1_4:54890091-54890110 Msa0170630:intron 40.0%
CCTGTAATTCCATTCACCAA+GGG - chr1_4:54890103-54890122 None:intergenic 40.0%
CCTTGGTGAATGGAATTACA+GGG + chr1_4:54890101-54890120 Msa0170630:intron 40.0%
CTTGGTGAATGGAATTACAG+GGG + chr1_4:54890102-54890121 Msa0170630:intron 40.0%
TCCTTTATGCCAACTGAGAA+TGG + chr1_4:54890152-54890171 Msa0170630:CDS 40.0%
TCCATTCTCAGTTGGCATAA+AGG - chr1_4:54890156-54890175 None:intergenic 40.0%
GGAATTACAAGAAGCAGATC+TGG + chr1_4:54890173-54890192 Msa0170630:CDS 40.0%
ATTACAAGAAGCAGATCTGG+TGG + chr1_4:54890176-54890195 Msa0170630:CDS 40.0%
TTACAAGAAGCAGATCTGGT+GGG + chr1_4:54890177-54890196 Msa0170630:CDS 40.0%
ATGCACAACATAGTGAGTGT+TGG - chr1_4:54890350-54890369 None:intergenic 40.0%
TGCATTCATTAGGTCGTTGT+GGG + chr1_4:54890365-54890384 Msa0170630:intron 40.0%
ACATGATGATTAACGTGTGG+AGG - chr1_4:54890479-54890498 None:intergenic 40.0%
GACACATGATGATTAACGTG+TGG - chr1_4:54890482-54890501 None:intergenic 40.0%
! AATGCAGCAGGTGTCATAAA+AGG - chr1_4:54890533-54890552 None:intergenic 40.0%
TCTTCTTGATGAAATGCAGC+AGG - chr1_4:54890545-54890564 None:intergenic 40.0%
ACAACAATGCTCAAGACTCT+AGG + chr1_4:54890582-54890601 Msa0170630:CDS 40.0%
CAGAGATCCTTTACCTGAAA+AGG + chr1_4:54890625-54890644 Msa0170630:CDS 40.0%
AACTTACCAGGACAGAATTG+TGG + chr1_4:54890717-54890736 Msa0170630:three_prime_UTR 40.0%
!!! TGGTTTGTTAGTTTTCCACG+TGG + chr1_4:54890784-54890803 Msa0170630:three_prime_UTR 40.0%
AGATGAACAAAACAACCACG+TGG - chr1_4:54890802-54890821 None:intergenic 40.0%
AAAATGGTTCACGTCCGTCT+TGG - chr1_4:54886149-54886168 None:intergenic 45.0%
!! GAATGTAGTGGGTGGTAATG+AGG + chr1_4:54886785-54886804 Msa0170630:CDS 45.0%
TTCTTCTTCAACGCTGTCTC+CGG - chr1_4:54886888-54886907 None:intergenic 45.0%
! AGACAGCGTTGAAGAAGAAG+AGG + chr1_4:54886889-54886908 Msa0170630:CDS 45.0%
! GACAGCGTTGAAGAAGAAGA+GGG + chr1_4:54886890-54886909 Msa0170630:CDS 45.0%
! ACAGCGTTGAAGAAGAAGAG+GGG + chr1_4:54886891-54886910 Msa0170630:CDS 45.0%
ATCGACGATGAAATCGGCAT+AGG - chr1_4:54886978-54886997 None:intergenic 45.0%
GAGAGTTCTCAGCTTGGAAA+AGG + chr1_4:54887009-54887028 Msa0170630:CDS 45.0%
GAGTTCTCAGCTTGGAAAAG+GGG + chr1_4:54887011-54887030 Msa0170630:CDS 45.0%
TTTGAAAGTCCACCTGTGCA+AGG + chr1_4:54887083-54887102 Msa0170630:CDS 45.0%
GTTTATATTTAGGGGGTGGG+GGG + chr1_4:54887462-54887481 Msa0170630:intron 45.0%
TACAAAGTGTGAGGTGGATG+TGG + chr1_4:54887522-54887541 Msa0170630:intron 45.0%
GTCTTAATCATCGGGTTCCT+AGG - chr1_4:54887886-54887905 None:intergenic 45.0%
! TCCATGATAGCGATGCATAG+CGG + chr1_4:54888196-54888215 Msa0170630:intron 45.0%
TTTAGAGGCCAAAATGGCAG+TGG - chr1_4:54888550-54888569 None:intergenic 45.0%
!!! TGCCATTTTGGCCTCTAAAG+TGG + chr1_4:54888551-54888570 Msa0170630:intron 45.0%
!!! GCCATTTTGGCCTCTAAAGT+GGG + chr1_4:54888552-54888571 Msa0170630:intron 45.0%
ATACTTCCAATAGTGGCCAG+TGG + chr1_4:54888608-54888627 Msa0170630:intron 45.0%
ATGTCCGCATTCGTCTTACT+TGG - chr1_4:54888701-54888720 None:intergenic 45.0%
! TGCAAGTGAACATGCTGACT+TGG + chr1_4:54888774-54888793 Msa0170630:intron 45.0%
GCCTAGAAAGCCGTAAAGTA+TGG + chr1_4:54888879-54888898 Msa0170630:intron 45.0%
GAGGGAATTGCATACTCAGT+AGG + chr1_4:54889540-54889559 Msa0170630:CDS 45.0%
ATGGTAACATCCTGAGACAG+AGG - chr1_4:54889724-54889743 None:intergenic 45.0%
ATATGCATTCTCTCTGCCAC+TGG + chr1_4:54889778-54889797 Msa0170630:CDS 45.0%
! CTTCGTCAATCGACTTCTTC+AGG + chr1_4:54889820-54889839 Msa0170630:CDS 45.0%
! TCGTCAATCGACTTCTTCAG+GGG + chr1_4:54889822-54889841 Msa0170630:CDS 45.0%
CCCTTGGTGAATGGAATTAC+AGG + chr1_4:54890100-54890119 Msa0170630:intron 45.0%
CCCTGTAATTCCATTCACCA+AGG - chr1_4:54890104-54890123 None:intergenic 45.0%
TGGCATAAAGGAACCAGACA+AGG - chr1_4:54890144-54890163 None:intergenic 45.0%
!! GCTGGTTTGCTTATAGCTTC+CGG + chr1_4:54890251-54890270 Msa0170630:CDS 45.0%
! ACTCCAGAGTTTTACCTGCA+CGG - chr1_4:54890279-54890298 None:intergenic 45.0%
!! TGCAGGTAAAACTCTGGAGT+AGG + chr1_4:54890279-54890298 Msa0170630:intron 45.0%
GTGCATTCATTAGGTCGTTG+TGG + chr1_4:54890364-54890383 Msa0170630:intron 45.0%
! GTTGTGGGAAGTTTTCTTCC+TGG + chr1_4:54890380-54890399 Msa0170630:CDS 45.0%
! TTTTCTTCCTGGTCACCATC+TGG + chr1_4:54890391-54890410 Msa0170630:CDS 45.0%
!!! TCTTGCTGTTTTGCTCCAGA+TGG - chr1_4:54890409-54890428 None:intergenic 45.0%
AGCAAAACAGCAAGAAGCAG+AGG + chr1_4:54890414-54890433 Msa0170630:CDS 45.0%
GCAAAACAGCAAGAAGCAGA+GGG + chr1_4:54890415-54890434 Msa0170630:CDS 45.0%
TGATGATTAACGTGTGGAGG+AGG - chr1_4:54890476-54890495 None:intergenic 45.0%
ATCTCTGTCATCAGCAGATG+AGG - chr1_4:54890612-54890631 None:intergenic 45.0%
AGACAACCACAATTCTGTCC+TGG - chr1_4:54890726-54890745 None:intergenic 45.0%
!! AAATAAAGTAATTAAATATT+CGG - chr1_4:54886230-54886249 None:intergenic 5.0%
TGAGCTTTCAAGCTGCTCCA+AGG + chr1_4:54886814-54886833 Msa0170630:CDS 50.0%
! TTTTTCCATGGCAACGGTGC+CGG + chr1_4:54886854-54886873 Msa0170630:CDS 50.0%
AGAAGAAGAGGGGAAGACCA+AGG + chr1_4:54886901-54886920 Msa0170630:CDS 50.0%
AGGGGAAGACCAAGGAAGTA+TGG + chr1_4:54886909-54886928 Msa0170630:CDS 50.0%
! GGGGAAGACCAAGGAAGTAT+GGG + chr1_4:54886910-54886929 Msa0170630:CDS 50.0%
!! TCATCGTCGATTCCGTTGAC+TGG + chr1_4:54886987-54887006 Msa0170630:CDS 50.0%
GCTGAGAACTCTCCAGTCAA+CGG - chr1_4:54887002-54887021 None:intergenic 50.0%
TGACTGGAGAGTTCTCAGCT+TGG + chr1_4:54887003-54887022 Msa0170630:CDS 50.0%
TCAGCTTGGAAAAGGGGTAG+AGG + chr1_4:54887017-54887036 Msa0170630:CDS 50.0%
CAGCTTGGAAAAGGGGTAGA+GGG + chr1_4:54887018-54887037 Msa0170630:CDS 50.0%
!! TGCTGGAACCACTGCCATTT+TGG + chr1_4:54888539-54888558 Msa0170630:intron 50.0%
! GCCCACTTTAGAGGCCAAAA+TGG - chr1_4:54888556-54888575 None:intergenic 50.0%
GGTTGGCACTCTGTCTTTGA+AGG + chr1_4:54888844-54888863 Msa0170630:intron 50.0%
! TGTAGGTGGAGGTGTAAGTG+AGG + chr1_4:54889521-54889540 Msa0170630:CDS 50.0%
! GTAGGTGGAGGTGTAAGTGA+GGG + chr1_4:54889522-54889541 Msa0170630:CDS 50.0%
GCTTACAGTGAATTCTGGCG+AGG + chr1_4:54889584-54889603 Msa0170630:CDS 50.0%
! CGTCAATCGACTTCTTCAGG+GGG + chr1_4:54889823-54889842 Msa0170630:CDS 50.0%
!! AGGGGGTACCTTAACGTATG+AGG + chr1_4:54889840-54889859 Msa0170630:CDS 50.0%
GGTGAATGGAATTACAGGGG+CGG + chr1_4:54890105-54890124 Msa0170630:intron 50.0%
TGGTGGGATGAGTGTCTCTT+TGG + chr1_4:54890193-54890212 Msa0170630:CDS 50.0%
! CTCCAGAGTTTTACCTGCAC+GGG - chr1_4:54890278-54890297 None:intergenic 50.0%
! TTTTGCTCCAGATGGTGACC+AGG - chr1_4:54890401-54890420 None:intergenic 50.0%
AAACAGCAAGAAGCAGAGGG+TGG + chr1_4:54890418-54890437 Msa0170630:CDS 50.0%
! GGTGCTGTGAATGTAGTGGG+TGG + chr1_4:54886777-54886796 Msa0170630:CDS 55.0%
GGAGCAGCTTGAAAGCTCAC+AGG - chr1_4:54886813-54886832 None:intergenic 55.0%
CCATCTGGCCCATACTTCCT+TGG - chr1_4:54886921-54886940 None:intergenic 55.0%
! CCAAGGAAGTATGGGCCAGA+TGG + chr1_4:54886918-54886937 Msa0170630:CDS 55.0%
GCCGCTATGCATCGCTATCA+TGG - chr1_4:54888200-54888219 None:intergenic 55.0%
CGCTGTTGTGCCCACTTTAG+AGG - chr1_4:54888565-54888584 None:intergenic 55.0%
TTCCAATAGTGGCCAGTGGC+CGG + chr1_4:54888612-54888631 Msa0170630:intron 55.0%
TGCACGTGATCCTTGTTGGG+AGG - chr1_4:54889758-54889777 None:intergenic 55.0%
GGGATGAGTGTCTCTTTGGC+AGG + chr1_4:54890197-54890216 Msa0170630:CDS 55.0%
CACCCAATACTCGGCCATCT+GGG - chr1_4:54890223-54890242 None:intergenic 55.0%
CGAGTCCACCACCCAATACT+CGG - chr1_4:54890232-54890251 None:intergenic 55.0%
! GAGTTTTACCTGCACGGGAC+CGG - chr1_4:54890273-54890292 None:intergenic 55.0%
GTCCCGTGCAGGTAAAACTC+TGG + chr1_4:54890273-54890292 Msa0170630:intron 55.0%
CCAGGAGCAGGCTTACCATC+TGG - chr1_4:54886936-54886955 None:intergenic 60.0%
CCAGATGGTAAGCCTGCTCC+TGG + chr1_4:54886933-54886952 Msa0170630:CDS 60.0%
! GAAAGCGCAGTCACAGCTCC+AGG - chr1_4:54886954-54886973 None:intergenic 60.0%
TATTTAGGGGGTGGGGGGAG+TGG + chr1_4:54887467-54887486 Msa0170630:intron 60.0%
TTTGTCCCTTCTCCGGCCAC+TGG - chr1_4:54888627-54888646 None:intergenic 60.0%
GTCTCTTTGGCAGGCCCAGA+TGG + chr1_4:54890206-54890225 Msa0170630:CDS 60.0%
AGGCCCAGATGGCCGAGTAT+TGG + chr1_4:54890217-54890236 Msa0170630:CDS 60.0%
GGCCCAGATGGCCGAGTATT+GGG + chr1_4:54890218-54890237 Msa0170630:CDS 60.0%
CCACCCAATACTCGGCCATC+TGG - chr1_4:54890224-54890243 None:intergenic 60.0%
!! CCAGATGGCCGAGTATTGGG+TGG + chr1_4:54890221-54890240 Msa0170630:CDS 60.0%
!! GATGGCCGAGTATTGGGTGG+TGG + chr1_4:54890224-54890243 Msa0170630:CDS 60.0%
!! GTATTGGGTGGTGGACTCGC+TGG + chr1_4:54890233-54890252 Msa0170630:CDS 60.0%
TATAGCTTCCGGTCCCGTGC+AGG + chr1_4:54890262-54890281 Msa0170630:CDS 60.0%
!! AACGGTGCCGGTGTCGTTGC+CGG + chr1_4:54886866-54886885 Msa0170630:CDS 65.0%
GCTGTCTCCGGCAACGACAC+CGG - chr1_4:54886876-54886895 None:intergenic 65.0%
GCAGTCACAGCTCCAGGAGC+AGG - chr1_4:54886948-54886967 None:intergenic 65.0%
CTCCGGCCACTGGCCACTAT+TGG - chr1_4:54888617-54888636 None:intergenic 65.0%
TAGTGGCCAGTGGCCGGAGA+AGG + chr1_4:54888618-54888637 Msa0170630:intron 65.0%
AGTGGCCAGTGGCCGGAGAA+GGG + chr1_4:54888619-54888638 Msa0170630:intron 65.0%
CGACACCGGCACCGTTGCCA+TGG - chr1_4:54886862-54886881 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54886146 54891009 54886146 ID=Msa0170630;Name=Msa0170630
chr1_4 mRNA 54886146 54891009 54886146 ID=Msa0170630-mRNA-1;Parent=Msa0170630;Name=Msa0170630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=610|1|1|1|1|1|5|333|341
chr1_4 exon 54886146 54887104 54886146 ID=Msa0170630-mRNA-1:exon:16391;Parent=Msa0170630-mRNA-1
chr1_4 exon 54889520 54889605 54889520 ID=Msa0170630-mRNA-1:exon:16392;Parent=Msa0170630-mRNA-1
chr1_4 exon 54889733 54889861 54889733 ID=Msa0170630-mRNA-1:exon:16393;Parent=Msa0170630-mRNA-1
chr1_4 exon 54890122 54890283 54890122 ID=Msa0170630-mRNA-1:exon:16394;Parent=Msa0170630-mRNA-1
chr1_4 exon 54890377 54891009 54890377 ID=Msa0170630-mRNA-1:exon:16395;Parent=Msa0170630-mRNA-1
chr1_4 five_prime_UTR 54886146 54886755 54886146 ID=Msa0170630-mRNA-1:five_prime_utr;Parent=Msa0170630-mRNA-1
chr1_4 CDS 54886756 54887104 54886756 ID=Msa0170630-mRNA-1:cds;Parent=Msa0170630-mRNA-1
chr1_4 CDS 54889520 54889605 54889520 ID=Msa0170630-mRNA-1:cds;Parent=Msa0170630-mRNA-1
chr1_4 CDS 54889733 54889861 54889733 ID=Msa0170630-mRNA-1:cds;Parent=Msa0170630-mRNA-1
chr1_4 CDS 54890122 54890283 54890122 ID=Msa0170630-mRNA-1:cds;Parent=Msa0170630-mRNA-1
chr1_4 CDS 54890377 54890676 54890377 ID=Msa0170630-mRNA-1:cds;Parent=Msa0170630-mRNA-1
chr1_4 three_prime_UTR 54890677 54891009 54890677 ID=Msa0170630-mRNA-1:three_prime_utr;Parent=Msa0170630-mRNA-1
Gene Sequence

>Msa0170630

ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGTAGTGGGTGGTAATGAGGTTCCTGTGAGCTTTCAAGCTGCTCCAAGGATTGATAACAACTTGGATTTTTCCATGGCAACGGTGCCGGTGTCGTTGCCGGAGACAGCGTTGAAGAAGAAGAGGGGAAGACCAAGGAAGTATGGGCCAGATGGTAAGCCTGCTCCTGGAGCTGTGACTGCGCTTTCGCCTATGCCGATTTCATCGTCGATTCCGTTGACTGGAGAGTTCTCAGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATGAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGTGCAAGTTGTAGGTGGAGGTGTAAGTGAGGGAATTGCATACTCAGTAGGTGCCAACTTCACAGCTTATGTGCTTACAGTGAATTCTGGCGAGGATGTTACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCAATATGCATTCTCTCTGCCACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGTACCTTAACGTATGAGGGGCGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGCCCAGATGGCCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCCGGTCCCGTGCAGGTCGTTGTGGGAAGTTTTCTTCCTGGTCACCATCTGGAGCAAAACAGCAAGAAGCAGAGGGTGGAGCATAATATATCAACTATTACACATAATAATCCTCCTCCACACGTTAATCATCATGTGTCTAATGAAGTAAGTTTTGGTGGAGTGAAGCCTTTTATGACACCTGCTGCATTTCATCAAGAAGAGAATATTGTTTCTTTCAACAACAATGCTCAAGACTCTAGGAACACCTCATCTGCTGATGACAGAGATCCTTTACCTGAAAAGGACTCTAATCATAGTCAATCAACTACTTGA
Protein sequence

>Msa0170630

MEERENFGAVNVVGGNEVPVSFQAAPRIDNNLDFSMATVPVSLPETALKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESMKKSSFKFDFESPPVQVVGGGVSEGIAYSVGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPGHHLEQNSKKQRVEHNISTITHNNPPPHVNHHVSNEVSFGGVKPFMTPAAFHQEENIVSFNNNAQDSRNTSSADDRDPLPEKDSNHSQSTT*