AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177750 MtrunA17_Chr1g0200731 97.674 430 10 0 1 430 68 497 0.0 863
Msa0177750 MtrunA17_Chr3g0124851 45.522 134 65 4 3 130 10 141 2.09e-28 117
Msa0177750 MtrunA17_Chr3g0124851 29.412 119 79 3 16 130 365 482 8.30e-11 63.9
Msa0177750 MtrunA17_Chr2g0326581 29.619 341 202 10 28 350 80 400 1.95e-22 99.8
Msa0177750 MtrunA17_Chr1g0194961 39.316 117 68 2 31 145 34 149 6.74e-21 93.6
Msa0177750 MtrunA17_Chr4g0029181 30.868 311 187 9 20 315 94 391 1.45e-19 91.3
Msa0177750 MtrunA17_Chr7g0271721 35.385 130 81 2 11 138 9 137 1.36e-18 86.7
Msa0177750 MtrunA17_Chr7g0271721 41.441 111 53 4 23 128 139 242 9.43e-15 75.1
Msa0177750 MtrunA17_Chr5g0438731 40.000 115 59 4 28 139 61 168 9.79e-17 82.0
Msa0177750 MtrunA17_Chr5g0438731 28.700 223 135 5 31 232 195 414 6.05e-15 76.6
Msa0177750 MtrunA17_Chr4g0041801 33.058 121 66 2 29 134 144 264 2.57e-14 74.7
Msa0177750 MtrunA17_Chr2g0287471 39.130 115 61 5 28 140 30 137 7.10e-14 72.4
Msa0177750 MtrunA17_Chr1g0201781 35.714 98 58 3 34 129 68 162 8.91e-14 69.3
Msa0177750 MtrunA17_Chr2g0331681 28.194 227 135 7 31 242 67 280 9.63e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177750 AT1G35620.1 60.048 413 160 4 22 430 28 439 0.0 514
Msa0177750 AT1G21750.2 41.791 134 69 4 5 130 6 138 7.58e-26 109
Msa0177750 AT1G21750.1 41.791 134 69 4 5 130 6 138 8.29e-26 109
Msa0177750 AT1G77510.1 33.929 224 123 8 28 237 31 243 2.79e-24 105
Msa0177750 AT1G77510.1 34.615 104 64 3 29 130 376 477 9.27e-11 64.3
Msa0177750 AT3G54960.2 28.662 314 202 10 15 315 86 390 4.91e-23 101
Msa0177750 AT3G54960.1 28.662 314 202 10 15 315 86 390 7.27e-23 101
Msa0177750 AT5G60640.2 28.239 301 197 8 24 313 100 392 2.76e-21 96.7
Msa0177750 AT5G60640.1 28.239 301 197 8 24 313 100 392 5.09e-21 95.9
Msa0177750 AT2G47470.2 40.000 110 63 2 31 138 28 136 1.17e-20 91.7
Msa0177750 AT2G47470.2 35.780 109 66 3 23 128 138 245 2.25e-15 76.3
Msa0177750 AT2G47470.3 40.000 110 63 2 31 138 28 136 2.50e-20 91.7
Msa0177750 AT2G47470.3 37.500 104 61 3 28 128 143 245 4.17e-15 76.3
Msa0177750 AT2G47470.4 40.000 110 63 2 31 138 28 136 2.63e-20 92.0
Msa0177750 AT2G47470.4 37.500 104 61 3 28 128 143 245 3.77e-15 76.6
Msa0177750 AT2G47470.1 40.000 110 63 2 31 138 28 136 2.95e-20 92.0
Msa0177750 AT2G47470.1 37.500 104 61 3 28 128 143 245 4.05e-15 77.0
Msa0177750 AT5G60640.3 28.571 266 174 7 24 281 100 357 1.91e-19 90.9
Msa0177750 AT2G32920.1 34.507 142 77 5 3 142 14 141 1.91e-16 81.6
Msa0177750 AT2G32920.1 27.027 222 138 5 31 231 167 385 1.22e-13 72.8
Msa0177750 AT1G04980.1 34.266 143 79 6 3 142 13 143 2.44e-15 78.2
Msa0177750 AT1G04980.1 27.753 227 132 6 31 232 172 391 3.20e-15 77.8
Msa0177750 AT1G52260.1 29.279 222 135 7 28 237 79 290 1.38e-13 73.2
Msa0177750 AT3G16110.1 24.255 235 162 4 18 242 66 294 2.37e-13 72.4
Msa0177750 AT1G76760.1 34.513 113 69 3 18 129 57 165 3.40e-13 67.8
Msa0177750 AT1G43560.1 41.026 78 42 2 34 110 66 140 3.93e-12 64.7

Find 83 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACTAAATGAGTTCTTTA+TGG 0.104563 1_4:+64977974 None:intergenic
GCAAATCGTGACTTAATATT+TGG 0.148394 1_4:-64979343 Msa0177750:CDS
TTCCCAGTATATATAGGTTT+TGG 0.148916 1_4:-64981796 Msa0177750:CDS
CAATAACTTAACAAGTTCTT+TGG 0.226371 1_4:+64979381 None:intergenic
GCTCATTGTACAGTGGATTA+AGG 0.240385 1_4:+64981644 None:intergenic
AACCCAAAACCTATATATAC+TGG 0.277212 1_4:+64981793 None:intergenic
ATAAGAACATAAGTTTAGTT+TGG 0.301329 1_4:+64977614 None:intergenic
TTCTAATGTCGAAAGATCTA+TGG 0.336526 1_4:+64977931 None:intergenic
ACCTTTCCATCAATCGATAA+TGG 0.340984 1_4:+64983060 None:intergenic
TTTAGAATTACCATGCCTTT+TGG 0.344568 1_4:-64977687 Msa0177750:three_prime_UTR
AAGCATTGAAGGAGAGGATC+AGG 0.355842 1_4:-64978042 Msa0177750:CDS
AAAACAAAATCTCATTCCTT+TGG 0.358538 1_4:-64979497 Msa0177750:CDS
CCCATGATTAAACAGCAAAA+TGG 0.374127 1_4:+64981954 None:intergenic
GACTTAATATTTGGTTATGT+TGG 0.399153 1_4:-64979334 Msa0177750:CDS
CATCAACTTAAGTGTCTCAT+AGG 0.401128 1_4:+64979462 None:intergenic
CTTCGATAAGATTCCTGCCT+TGG 0.402929 1_4:-64981671 Msa0177750:CDS
GCTGAACCATTATCGATTGA+TGG 0.403240 1_4:-64983066 Msa0177750:CDS
CTCATTGTACAGTGGATTAA+GGG 0.409749 1_4:+64981645 None:intergenic
AAGAACTTGTTAAGTTATTG+AGG 0.421672 1_4:-64979378 Msa0177750:CDS
GCCTGTACTTGCAGCCTTGA+AGG 0.424459 1_4:-64982156 Msa0177750:CDS
GAAATAAACTAACCTTCAAA+TGG 0.433269 1_4:+64981604 None:intergenic
TTAATGCTTATTCAAACCTT+AGG 0.438716 1_4:-64977876 Msa0177750:CDS
TAAAGAAGATGAGTATCTTT+CGG 0.440421 1_4:-64979239 Msa0177750:intron
CAAATCACTAAATTTCTAGA+AGG 0.440849 1_4:-64978014 Msa0177750:CDS
ATCATCTCCTTTACTACCTA+AGG 0.442205 1_4:+64977860 None:intergenic
TTCATCCTTCGATCACATCT+TGG 0.449806 1_4:-64983001 Msa0177750:CDS
TCCTTCAAGGCTGCAAGTAC+AGG 0.452113 1_4:+64982155 None:intergenic
AGAACTTGTTAAGTTATTGA+GGG 0.452218 1_4:-64979377 Msa0177750:CDS
AACATAAGTTTAGTTTGGAC+AGG 0.455471 1_4:+64977619 None:intergenic
GATCATCACTTAATTATAGC+TGG 0.455997 1_4:-64977711 Msa0177750:three_prime_UTR
CCTTCTGAGGTAGAGCTGCT+TGG 0.459228 1_4:+64977795 None:intergenic
CTTGGTCCGCGATATTCAGT+TGG 0.466847 1_4:+64981928 None:intergenic
TTAGTTATTTCTTGACATGA+AGG 0.469957 1_4:-64977578 Msa0177750:three_prime_UTR
TGGTTGATTTCTACGCTCCT+TGG 0.470298 1_4:-64982981 Msa0177750:CDS
ATTCAAACCTTAGGTAGTAA+AGG 0.472205 1_4:-64977867 Msa0177750:CDS
TTGGTCCGCGATATTCAGTT+GGG 0.476722 1_4:+64981929 None:intergenic
AGCAGAATCTGAATCGAGAA+TGG 0.476767 1_4:+64981852 None:intergenic
AATGAGTATAGGTTCCTTCA+AGG 0.477797 1_4:+64982142 None:intergenic
ACCATAAAGAACTCATTTAG+TGG 0.489496 1_4:-64977975 Msa0177750:CDS
TAGATCTTTCGACATTAGAA+TGG 0.490056 1_4:-64977928 Msa0177750:CDS
GATGTGATCGAAGGATGAAA+TGG 0.493338 1_4:+64983005 None:intergenic
TTAAGTGTCTCATAGGATAC+AGG 0.508310 1_4:+64979469 None:intergenic
TGAAATGGCGGAATCGAAGT+TGG 0.511617 1_4:+64983020 None:intergenic
AGTTCATTGATAGAAAAGTT+CGG 0.512411 1_4:-64981766 Msa0177750:CDS
GGAAGAAAAGAGTATAAAGA+AGG 0.513510 1_4:-64977771 Msa0177750:CDS
GTTGGTTCAGAAAGCATTGA+AGG 0.515841 1_4:-64978053 Msa0177750:CDS
ACAAGTAAATCAGCTTTCCT+TGG 0.516496 1_4:+64981910 None:intergenic
AAACAGCAAAATGGTTGGAT+AGG 0.519002 1_4:+64981963 None:intergenic
TGATTAAACAGCAAAATGGT+TGG 0.523489 1_4:+64981958 None:intergenic
GAGAGTACCAAACCAAGAAA+AGG 0.523714 1_4:-64977826 Msa0177750:CDS
AAATATTTACACATACCAAA+AGG 0.527479 1_4:+64977672 None:intergenic
GGATTAAGGGAAACCAAGGC+AGG 0.543644 1_4:+64981658 None:intergenic
ATGGTTCAGCACGACAAAAG+TGG 0.545324 1_4:+64983079 None:intergenic
AATTAATTATAACATATACA+AGG 0.551019 1_4:-64977733 Msa0177750:three_prime_UTR
TTAGGTAGTAAAGGAGATGA+TGG 0.552978 1_4:-64977858 Msa0177750:CDS
TTCTGTCTTACAGTTAGATG+CGG 0.553009 1_4:-64982183 Msa0177750:intron
ACCATTATCGATTGATGGAA+AGG 0.554690 1_4:-64983061 Msa0177750:CDS
TTCAGAAAGCATTGAAGGAG+AGG 0.562407 1_4:-64978048 Msa0177750:CDS
ACCCAAAACCTATATATACT+GGG 0.565590 1_4:+64981794 None:intergenic
TTATGTTGGAGTTAAACAGC+TGG 0.567225 1_4:-64979320 Msa0177750:CDS
AGTTGATGAAAGCTGATGGT+AGG 0.573136 1_4:-64979447 Msa0177750:CDS
GATTTCTACGCTCCTTGGTG+TGG 0.573164 1_4:-64982976 Msa0177750:CDS
CCAAGCAGCTCTACCTCAGA+AGG 0.573325 1_4:-64977795 Msa0177750:CDS
TAGGATACAGGCACAGCCAA+AGG 0.591538 1_4:+64979481 None:intergenic
ATCAACCAAGATGTGATCGA+AGG 0.597452 1_4:+64982996 None:intergenic
TGGATAAATTGCATCAGTGA+TGG 0.598373 1_4:+64977951 None:intergenic
TTTCTAGAAGGATACAGAGA+AGG 0.608440 1_4:-64978002 Msa0177750:CDS
CTTAAGTTGATGAAAGCTGA+TGG 0.612346 1_4:-64979451 Msa0177750:CDS
CCATAAAGAACTCATTTAGT+GGG 0.620397 1_4:-64977974 Msa0177750:CDS
AGCATTGAAGGAGAGGATCA+GGG 0.623276 1_4:-64978041 Msa0177750:CDS
CAACTGAATATCGCGGACCA+AGG 0.627911 1_4:-64981927 Msa0177750:CDS
TTTACACATACCAAAAGGCA+TGG 0.628786 1_4:+64977677 None:intergenic
AGCAGCTCTACCTCAGAAGG+TGG 0.629957 1_4:-64977792 Msa0177750:CDS
CTGCAAGCGTCTCTCTCCTG+AGG 0.631362 1_4:-64982950 Msa0177750:intron
TGGCATTGATGAAATGAAAG+TGG 0.640080 1_4:-64977535 Msa0177750:three_prime_UTR
TGTCTTACAGTTAGATGCGG+CGG 0.642474 1_4:-64982180 Msa0177750:intron
CAGTGGATTAAGGGAAACCA+AGG 0.642707 1_4:+64981654 None:intergenic
GTGATCGAAGGATGAAATGG+CGG 0.654275 1_4:+64983008 None:intergenic
TGGATCCAAACACAAAACAG+AGG 0.660550 1_4:+64983166 None:intergenic
GTGTTACGCTCATTGTACAG+TGG 0.669544 1_4:+64981637 None:intergenic
CTTATTTATTACTTTCAACG+TGG 0.672088 1_4:-64977555 Msa0177750:three_prime_UTR
CGCTTGCAGTGACCACACCA+AGG 0.682818 1_4:+64982964 None:intergenic
GGGGTCCCAACTGAATATCG+CGG 0.700525 1_4:-64981934 Msa0177750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAATTATTTAAAGAT+TGG + chr1_4:64980335-64980354 None:intergenic 10.0%
!! CAATCTTTAAATAATTTATT+TGG - chr1_4:64980333-64980352 Msa0177750:intron 10.0%
!! TGATTTATTAGATAATAATT+GGG + chr1_4:64980830-64980849 None:intergenic 10.0%
!! TTGATTTATTAGATAATAAT+TGG + chr1_4:64980831-64980850 None:intergenic 10.0%
!! TAAACTATTTATGAAAAAAT+TGG + chr1_4:64982206-64982225 None:intergenic 10.0%
!! AATTAATTATAACATATACA+AGG - chr1_4:64983027-64983046 Msa0177750:CDS 10.0%
!!! TAAAAAAAAGTTCTAAAACA+AGG - chr1_4:64978283-64978302 Msa0177750:intron 15.0%
!! TTAGTTTATTTCATACATAA+TGG - chr1_4:64979167-64979186 Msa0177750:intron 15.0%
!!! TTATATATTTTTCTTTAAGC+AGG - chr1_4:64979413-64979432 Msa0177750:CDS 15.0%
!!! TATATATTTTTCTTTAAGCA+GGG - chr1_4:64979414-64979433 Msa0177750:CDS 15.0%
!! ATATAATAACTTAACATGTA+AGG + chr1_4:64979913-64979932 None:intergenic 15.0%
!!! ACTAAAGTAATATTTTTTTC+AGG + chr1_4:64981562-64981581 None:intergenic 15.0%
!! TATAAACTTAAAAAATGTGT+TGG - chr1_4:64982612-64982631 Msa0177750:intron 15.0%
!! ATTAATGTAGAAATATGTAT+TGG + chr1_4:64982677-64982696 None:intergenic 15.0%
!!! TATTTCTACATTAATTTTTC+AGG - chr1_4:64982682-64982701 Msa0177750:intron 15.0%
!!! TTGTGTTTTGTTTGATTTTT+CGG + chr1_4:64977573-64977592 None:intergenic 20.0%
!!! CAAAATCAAATTTTGAAAGT+GGG + chr1_4:64977885-64977904 None:intergenic 20.0%
!!! ACAAAATCAAATTTTGAAAG+TGG + chr1_4:64977886-64977905 None:intergenic 20.0%
!! TTTATAACGTGTTACATAAA+AGG + chr1_4:64978324-64978343 None:intergenic 20.0%
!!! AAAAAAGTTTTTCCTTTGTT+TGG + chr1_4:64978390-64978409 None:intergenic 20.0%
!!! ACAAAGGAAAAACTTTTTTT+TGG - chr1_4:64978391-64978410 Msa0177750:intron 20.0%
!! AAGTTAGGAAGAAATAAATA+CGG + chr1_4:64978740-64978759 None:intergenic 20.0%
!!! AAAAGTATAAGAAAAATGCA+TGG - chr1_4:64979019-64979038 Msa0177750:intron 20.0%
!! AGTGTGAAAAAAATGTATAT+AGG + chr1_4:64979233-64979252 None:intergenic 20.0%
!!! TTTTTTTAAGAGTGAATGAA+TGG - chr1_4:64979375-64979394 Msa0177750:CDS 20.0%
!!! ATATATTTTTCTTTAAGCAG+GGG - chr1_4:64979415-64979434 Msa0177750:CDS 20.0%
!! TATTATATAAGCCTAAGAAT+TGG - chr1_4:64979925-64979944 Msa0177750:intron 20.0%
!! ATTATATAAGCCTAAGAATT+GGG - chr1_4:64979926-64979945 Msa0177750:intron 20.0%
!! ATAAATAAAACCCAATTCTT+AGG + chr1_4:64979939-64979958 None:intergenic 20.0%
!! AGCCTAATAATATCATAAAT+CGG + chr1_4:64980031-64980050 None:intergenic 20.0%
!! ACAAATAAACGAATAAAGTA+AGG + chr1_4:64980222-64980241 None:intergenic 20.0%
!! TTACTTTATTCGTTTATTTG+TGG - chr1_4:64980221-64980240 Msa0177750:intron 20.0%
!!! TATTGCATTTTAAGATAACT+CGG - chr1_4:64980507-64980526 Msa0177750:intron 20.0%
!!! TATTGCATTTTAAGATAACT+CGG - chr1_4:64980507-64980526 Msa0177750:intron 20.0%
!!! TGTAATATTTTTGCTACTTT+TGG - chr1_4:64980593-64980612 Msa0177750:intron 20.0%
!!! GTAATATTTTTGCTACTTTT+GGG - chr1_4:64980594-64980613 Msa0177750:intron 20.0%
!! ATAATAATTGGGTATAGTAT+AGG + chr1_4:64980819-64980838 None:intergenic 20.0%
!!! TAAATAAGAGAAGTACAATT+AGG + chr1_4:64981589-64981608 None:intergenic 20.0%
!!! TTCTTTTGTATGTCTTATTT+TGG - chr1_4:64981650-64981669 Msa0177750:CDS 20.0%
!! TATTAAATACCTGGAAAATA+AGG - chr1_4:64981851-64981870 Msa0177750:CDS 20.0%
!!! TTTGAACTTTTTCTATAATG+TGG - chr1_4:64982647-64982666 Msa0177750:intron 20.0%
!!! TTGAACTTTTTCTATAATGT+GGG - chr1_4:64982648-64982667 Msa0177750:intron 20.0%
!! AAATATTTACACATACCAAA+AGG + chr1_4:64983091-64983110 None:intergenic 20.0%
!! ATAAGAACATAAGTTTAGTT+TGG + chr1_4:64983149-64983168 None:intergenic 20.0%
! AAGTTCAATTTAAGAAGAAC+AGG + chr1_4:64978138-64978157 None:intergenic 25.0%
! TAATAGTCATGCAACAAATT+AGG + chr1_4:64978479-64978498 None:intergenic 25.0%
!! AACCTGTTTCATTTTATATG+AGG - chr1_4:64978539-64978558 Msa0177750:intron 25.0%
! TTCCTCATATAAAATGAAAC+AGG + chr1_4:64978544-64978563 None:intergenic 25.0%
! AAAAGCAACACTTATAAGTT+AGG + chr1_4:64978755-64978774 None:intergenic 25.0%
!!! ACTTATAAGTGTTGCTTTTT+TGG - chr1_4:64978756-64978775 Msa0177750:intron 25.0%
!!! CTTATAAGTGTTGCTTTTTT+GGG - chr1_4:64978757-64978776 Msa0177750:intron 25.0%
!! AATAATTTTGTTGAAGAAGC+TGG - chr1_4:64978934-64978953 Msa0177750:intron 25.0%
!!! ACTTTTTTCCCAGTATATAT+AGG - chr1_4:64978958-64978977 Msa0177750:intron 25.0%
! AGTTCATTGATAGAAAAGTT+CGG - chr1_4:64978994-64979013 Msa0177750:intron 25.0%
! GAAATAAACTAACCTTCAAA+TGG + chr1_4:64979159-64979178 None:intergenic 25.0%
!!! TCACAGTTATTTTACATACT+AGG - chr1_4:64979195-64979214 Msa0177750:intron 25.0%
!! AAGCTACTTTGATAGTTAAA+CGG - chr1_4:64979334-64979353 Msa0177750:CDS 25.0%
!! GGTTTTTGACATATACTTTA+AGG + chr1_4:64979505-64979524 None:intergenic 25.0%
! CCTAGATCAATAAAACTATA+GGG + chr1_4:64979577-64979596 None:intergenic 25.0%
! TCCTAGATCAATAAAACTAT+AGG + chr1_4:64979578-64979597 None:intergenic 25.0%
!! AAACATGGACCTTTATTTAT+AGG - chr1_4:64979685-64979704 Msa0177750:intron 25.0%
! TTCAGAATGCCTATAAATAA+AGG + chr1_4:64979697-64979716 None:intergenic 25.0%
!! TCTTTCTGTTATATTTCTGT+TGG + chr1_4:64979772-64979791 None:intergenic 25.0%
! GTTGTAAATAGTTAGTTAGT+TGG + chr1_4:64979799-64979818 None:intergenic 25.0%
! AACTAACTATTTACAACACA+AGG - chr1_4:64979802-64979821 Msa0177750:intron 25.0%
!!! TGCCGATTTATGATATTATT+AGG - chr1_4:64980026-64980045 Msa0177750:intron 25.0%
! TTTCTCTTTGACATTCTTAT+TGG + chr1_4:64980117-64980136 None:intergenic 25.0%
!!! AAGCTCTTTTTTTTAGTGTT+CGG - chr1_4:64980706-64980725 Msa0177750:intron 25.0%
!!! TCAAAAAGCAGATGATTTTT+TGG - chr1_4:64981230-64981249 Msa0177750:intron 25.0%
! AAAACAAAATCTCATTCCTT+TGG - chr1_4:64981263-64981282 Msa0177750:intron 25.0%
!!! GAAAATAGTTTTGACTATTG+TGG - chr1_4:64981335-64981354 Msa0177750:intron 25.0%
! CAATAACTTAACAAGTTCTT+TGG + chr1_4:64981382-64981401 None:intergenic 25.0%
!!! AAGAACTTGTTAAGTTATTG+AGG - chr1_4:64981382-64981401 Msa0177750:intron 25.0%
!!! AGAACTTGTTAAGTTATTGA+GGG - chr1_4:64981383-64981402 Msa0177750:intron 25.0%
! GACTTAATATTTGGTTATGT+TGG - chr1_4:64981426-64981445 Msa0177750:intron 25.0%
! TACTACTAAACTACCAAAAA+TGG - chr1_4:64981488-64981507 Msa0177750:intron 25.0%
! TAAAGAAGATGAGTATCTTT+CGG - chr1_4:64981521-64981540 Msa0177750:intron 25.0%
!! AGAGGGAAAAATTTGAAATT+AGG + chr1_4:64981616-64981635 None:intergenic 25.0%
! GAAATGTATCAGAATAAAGA+GGG + chr1_4:64981633-64981652 None:intergenic 25.0%
! AGAAATGTATCAGAATAAAG+AGG + chr1_4:64981634-64981653 None:intergenic 25.0%
! ATATACTTCTCTTTGTAACA+TGG + chr1_4:64982249-64982268 None:intergenic 25.0%
!! ACAAAGTTTTTGTCAAATAG+TGG + chr1_4:64982374-64982393 None:intergenic 25.0%
!!! ACATTAATTTTTCAGGTAGT+TGG - chr1_4:64982689-64982708 Msa0177750:intron 25.0%
!! CAAATCACTAAATTTCTAGA+AGG - chr1_4:64982746-64982765 Msa0177750:intron 25.0%
! TTAATGCTTATTCAAACCTT+AGG - chr1_4:64982884-64982903 Msa0177750:intron 25.0%
!!! TTAGTTATTTCTTGACATGA+AGG - chr1_4:64983182-64983201 Msa0177750:five_prime_UTR 25.0%
! CTTATTTATTACTTTCAACG+TGG - chr1_4:64983205-64983224 Msa0177750:five_prime_UTR 25.0%
!! CTTCTTCTTCTCTTTTGTTT+TGG + chr1_4:64977617-64977636 None:intergenic 30.0%
AGGTATATCTCTACTCTTAT+GGG - chr1_4:64977830-64977849 Msa0177750:CDS 30.0%
TATGCATGCATCAAACATAA+TGG - chr1_4:64978042-64978061 Msa0177750:CDS 30.0%
!! TCAAACATAATGGACATCTT+TGG - chr1_4:64978052-64978071 Msa0177750:CDS 30.0%
!! TCTACTTTTGCAATGAGTAT+AGG + chr1_4:64978632-64978651 None:intergenic 30.0%
! GATGTTGAGTATGTTTTCTT+TGG - chr1_4:64978686-64978705 Msa0177750:intron 30.0%
TGATTAAACAGCAAAATGGT+TGG + chr1_4:64978805-64978824 None:intergenic 30.0%
!!! ACCATTTTGCTGTTTAATCA+TGG - chr1_4:64978805-64978824 Msa0177750:intron 30.0%
!!! CCATTTTGCTGTTTAATCAT+GGG - chr1_4:64978806-64978825 Msa0177750:intron 30.0%
!!! CATTTTGCTGTTTAATCATG+GGG - chr1_4:64978807-64978826 Msa0177750:intron 30.0%
! TTCCCAGTATATATAGGTTT+TGG - chr1_4:64978964-64978983 Msa0177750:intron 30.0%
! TCCCAGTATATATAGGTTTT+GGG - chr1_4:64978965-64978984 Msa0177750:intron 30.0%
ACCCAAAACCTATATATACT+GGG + chr1_4:64978969-64978988 None:intergenic 30.0%
AACCCAAAACCTATATATAC+TGG + chr1_4:64978970-64978989 None:intergenic 30.0%
!!! AGTATATATAGGTTTTGGGT+TGG - chr1_4:64978969-64978988 Msa0177750:intron 30.0%
! AATGAGCGTAACACATTTTA+TGG - chr1_4:64979132-64979151 Msa0177750:intron 30.0%
! ACATTTTATGGTCCATTTGA+AGG - chr1_4:64979144-64979163 Msa0177750:intron 30.0%
!! GAGTTGATTTTGTCATATCT+AGG - chr1_4:64979256-64979275 Msa0177750:CDS 30.0%
TCTAGGAAATAAATATGTGC+TGG - chr1_4:64979273-64979292 Msa0177750:CDS 30.0%
! AATAAATATGTGCTGGCATA+TGG - chr1_4:64979280-64979299 Msa0177750:CDS 30.0%
TATGTCAAAAACCAGTTGTT+AGG - chr1_4:64979512-64979531 Msa0177750:CDS 30.0%
!!! CCCTATAGTTTTATTGATCT+AGG - chr1_4:64979574-64979593 Msa0177750:intron 30.0%
AAATCCTGCACTACTTAAAT+AGG - chr1_4:64979715-64979734 Msa0177750:intron 30.0%
AATCCTGCACTACTTAAATA+GGG - chr1_4:64979716-64979735 Msa0177750:intron 30.0%
CTTAACTTCATTCCAAAGAT+GGG - chr1_4:64980049-64980068 Msa0177750:intron 30.0%
TTAACTTCATTCCAAAGATG+GGG - chr1_4:64980050-64980069 Msa0177750:intron 30.0%
TCATAAACGCTATATCTACT+AGG - chr1_4:64980140-64980159 Msa0177750:intron 30.0%
ATTTGTGGAACCTTATATAC+TGG - chr1_4:64980236-64980255 Msa0177750:intron 30.0%
TTTGTGGAACCTTATATACT+GGG - chr1_4:64980237-64980256 Msa0177750:intron 30.0%
! TCTTTCTGAAAGTTTAGGTT+AGG - chr1_4:64980426-64980445 Msa0177750:intron 30.0%
!!! TTTTTCTTTTTGGTTTTCCC+TGG - chr1_4:64980457-64980476 Msa0177750:intron 30.0%
! TAGTTCACTATCCAGATTTT+AGG - chr1_4:64980652-64980671 Msa0177750:intron 30.0%
! CTTTTACTTCTCCTAAAATC+TGG + chr1_4:64980666-64980685 None:intergenic 30.0%
TAGGAGAAGTAAAAGTTGTA+AGG - chr1_4:64980671-64980690 Msa0177750:intron 30.0%
GTAAAAGTTGTAAGGCTTTA+TGG - chr1_4:64980679-64980698 Msa0177750:intron 30.0%
GAACACTAAAAAAAAGAGCT+TGG + chr1_4:64980707-64980726 None:intergenic 30.0%
CTCTAACCTTAACATACAAT+AGG - chr1_4:64980893-64980912 Msa0177750:intron 30.0%
! TTGAAAGGATTTTCTTGTCA+GGG - chr1_4:64980921-64980940 Msa0177750:intron 30.0%
TAGGAATTGAAGTAGATTTG+AGG - chr1_4:64980944-64980963 Msa0177750:intron 30.0%
GCAAATCGTGACTTAATATT+TGG - chr1_4:64981417-64981436 Msa0177750:intron 30.0%
AACTACCAAAAATGGTCATT+TGG - chr1_4:64981496-64981515 Msa0177750:intron 30.0%
ACTACCAAAAATGGTCATTT+GGG - chr1_4:64981497-64981516 Msa0177750:intron 30.0%
! TTATCCCAAATGACCATTTT+TGG + chr1_4:64981504-64981523 None:intergenic 30.0%
CTTATCTATATGTCTATGCT+TGG - chr1_4:64981679-64981698 Msa0177750:CDS 30.0%
AACACCTTAGAAAAGTTAGA+TGG + chr1_4:64981755-64981774 None:intergenic 30.0%
ATACCTTGGTATTAAATACC+TGG - chr1_4:64981842-64981861 Msa0177750:CDS 30.0%
TTTCCAGGTATTTAATACCA+AGG + chr1_4:64981848-64981867 None:intergenic 30.0%
! GCTGTTAGTAAAATTCGTTT+TGG - chr1_4:64981898-64981917 Msa0177750:CDS 30.0%
!! ATTCGTTTTGGTACATAACT+AGG - chr1_4:64981910-64981929 Msa0177750:CDS 30.0%
!! TAACTAGGAAACTCTAGAAT+AGG - chr1_4:64981925-64981944 Msa0177750:CDS 30.0%
!!! GAAACTCTAGAATAGGATTT+TGG - chr1_4:64981932-64981951 Msa0177750:CDS 30.0%
! AAACATTGGTATCTGAAGTT+CGG - chr1_4:64981994-64982013 Msa0177750:intron 30.0%
ACCATGTAACTATCCTATAT+AGG - chr1_4:64982143-64982162 Msa0177750:CDS 30.0%
ACCATAAAGAACTCATTTAG+TGG - chr1_4:64982785-64982804 Msa0177750:intron 30.0%
CCATAAAGAACTCATTTAGT+GGG - chr1_4:64982786-64982805 Msa0177750:intron 30.0%
TTCTAATGTCGAAAGATCTA+TGG + chr1_4:64982832-64982851 None:intergenic 30.0%
TAGATCTTTCGACATTAGAA+TGG - chr1_4:64982832-64982851 Msa0177750:intron 30.0%
ATTCAAACCTTAGGTAGTAA+AGG - chr1_4:64982893-64982912 Msa0177750:intron 30.0%
! TGATTAACCTTTTCTTGGTT+TGG + chr1_4:64982944-64982963 None:intergenic 30.0%
! TTGGTTGATTAACCTTTTCT+TGG + chr1_4:64982949-64982968 None:intergenic 30.0%
! GGAAGAAAAGAGTATAAAGA+AGG - chr1_4:64982989-64983008 Msa0177750:CDS 30.0%
GATCATCACTTAATTATAGC+TGG - chr1_4:64983049-64983068 Msa0177750:CDS 30.0%
!! TTTAGAATTACCATGCCTTT+TGG - chr1_4:64983073-64983092 Msa0177750:CDS 30.0%
!! AACATAAGTTTAGTTTGGAC+AGG + chr1_4:64983144-64983163 None:intergenic 30.0%
! ACCATTATCGATTGATGGAA+AGG - chr1_4:64977699-64977718 Msa0177750:three_prime_UTR 35.0%
ACCTTTCCATCAATCGATAA+TGG + chr1_4:64977703-64977722 None:intergenic 35.0%
TAAGAGTAGAGATATACCTC+AGG + chr1_4:64977829-64977848 None:intergenic 35.0%
GAGGTATATCTCTACTCTTA+TGG - chr1_4:64977829-64977848 Msa0177750:CDS 35.0%
TGTCCATGTTGTATCAATGT+TGG - chr1_4:64977967-64977986 Msa0177750:CDS 35.0%
TGTCCAACATTGATACAACA+TGG + chr1_4:64977973-64977992 None:intergenic 35.0%
CATACTACTCTAACTCTCAA+GGG + chr1_4:64978026-64978045 None:intergenic 35.0%
!! AACATAATGGACATCTTTGG+TGG - chr1_4:64978055-64978074 Msa0177750:CDS 35.0%
TGTTTGGACAATCCTTGAAA+TGG + chr1_4:64978374-64978393 None:intergenic 35.0%
TTCAAGGATTGTCCAAACAA+AGG - chr1_4:64978375-64978394 Msa0177750:intron 35.0%
AGTCACAAGAATCTCTTATC+AGG + chr1_4:64978515-64978534 None:intergenic 35.0%
TTCTGTCTTACAGTTAGATG+CGG - chr1_4:64978577-64978596 Msa0177750:intron 35.0%
AATGAGTATAGGTTCCTTCA+AGG + chr1_4:64978621-64978640 None:intergenic 35.0%
AAACAGCAAAATGGTTGGAT+AGG + chr1_4:64978800-64978819 None:intergenic 35.0%
CCCATGATTAAACAGCAAAA+TGG + chr1_4:64978809-64978828 None:intergenic 35.0%
ACAAGTAAATCAGCTTTCCT+TGG + chr1_4:64978853-64978872 None:intergenic 35.0%
! GAAAAATGCATGGTTTTCTG+TGG - chr1_4:64979029-64979048 Msa0177750:intron 35.0%
!! CTCATTGTACAGTGGATTAA+GGG + chr1_4:64979118-64979137 None:intergenic 35.0%
GAGCTTCATACAATGGAATA+TGG + chr1_4:64979452-64979471 None:intergenic 35.0%
CCAAAATGAGCTTCATACAA+TGG + chr1_4:64979459-64979478 None:intergenic 35.0%
! CCATTGTATGAAGCTCATTT+TGG - chr1_4:64979456-64979475 Msa0177750:CDS 35.0%
! AACCAGTTGTTAGGTTCTTT+TGG - chr1_4:64979521-64979540 Msa0177750:CDS 35.0%
TTCCAAAAGAACCTAACAAC+TGG + chr1_4:64979526-64979545 None:intergenic 35.0%
AGGAAAAGAAAGATAGACAG+AGG - chr1_4:64979594-64979613 Msa0177750:intron 35.0%
!!! GCTTTTGGTTAGTTTTTGAC+TGG + chr1_4:64979647-64979666 None:intergenic 35.0%
!! GTAGATGGTATCTTAGCTTT+TGG + chr1_4:64979662-64979681 None:intergenic 35.0%
GATACCATCTACAGAAAACA+TGG - chr1_4:64979670-64979689 Msa0177750:intron 35.0%
! GTTAGTTCTTATTCCTTCGA+TGG - chr1_4:64979828-64979847 Msa0177750:intron 35.0%
! CTTTGTTAGTTTACCATCGA+AGG + chr1_4:64979844-64979863 None:intergenic 35.0%
CTTCGATGGTAAACTAACAA+AGG - chr1_4:64979842-64979861 Msa0177750:intron 35.0%
ACTTAACATGTAAGGAGAGT+AGG + chr1_4:64979905-64979924 None:intergenic 35.0%
GCTTAACTTCATTCCAAAGA+TGG - chr1_4:64980048-64980067 Msa0177750:intron 35.0%
GCAATGCACAAATCAATCTT+GGG + chr1_4:64980172-64980191 None:intergenic 35.0%
AGCAATGCACAAATCAATCT+TGG + chr1_4:64980173-64980192 None:intergenic 35.0%
! CTGGTTCTTTCTGAAAGTTT+AGG - chr1_4:64980421-64980440 Msa0177750:intron 35.0%
! TCATGAGAACAAGTTTTCCA+GGG + chr1_4:64980477-64980496 None:intergenic 35.0%
! TTCATGAGAACAAGTTTTCC+AGG + chr1_4:64980478-64980497 None:intergenic 35.0%
GCAGAAGAACTGTTAAACAA+GGG - chr1_4:64980751-64980770 Msa0177750:intron 35.0%
!! GTTTCTTTAGGAGGTCTTTT+TGG - chr1_4:64980793-64980812 Msa0177750:intron 35.0%
TAGAGTATGACAATGTTACC+TGG - chr1_4:64980852-64980871 Msa0177750:intron 35.0%
AGTCGACCTATTGTATGTTA+AGG + chr1_4:64980902-64980921 None:intergenic 35.0%
!! ATACAATAGGTCGACTTGAA+AGG - chr1_4:64980906-64980925 Msa0177750:intron 35.0%
! CTTGAAAGGATTTTCTTGTC+AGG - chr1_4:64980920-64980939 Msa0177750:intron 35.0%
!! GAATGTCTTTGTTTCTGTAC+TGG - chr1_4:64981030-64981049 Msa0177750:intron 35.0%
CTACTTGCATTATGTTATGC+TGG - chr1_4:64981118-64981137 Msa0177750:intron 35.0%
TTAAGTGTCTCATAGGATAC+AGG + chr1_4:64981294-64981313 None:intergenic 35.0%
CATCAACTTAAGTGTCTCAT+AGG + chr1_4:64981301-64981320 None:intergenic 35.0%
!! CTTAAGTTGATGAAAGCTGA+TGG - chr1_4:64981309-64981328 Msa0177750:intron 35.0%
TTATGTTGGAGTTAAACAGC+TGG - chr1_4:64981440-64981459 Msa0177750:intron 35.0%
! CATGCCATCTAACTTTTCTA+AGG - chr1_4:64981748-64981767 Msa0177750:CDS 35.0%
CGTTGCTAAATTATGCAACA+AGG + chr1_4:64981784-64981803 None:intergenic 35.0%
! AGTGAGAATTTGAGATACCT+TGG - chr1_4:64981828-64981847 Msa0177750:CDS 35.0%
CTATACCAATAGTAGTTCAC+AGG + chr1_4:64981879-64981898 None:intergenic 35.0%
CAAGAAATCACACATTCTCT+TGG - chr1_4:64981959-64981978 Msa0177750:CDS 35.0%
! ATACCAATGTTTGGAATCCT+AGG + chr1_4:64981986-64982005 None:intergenic 35.0%
GAACTTCAGATACCAATGTT+TGG + chr1_4:64981995-64982014 None:intergenic 35.0%
! AACATTGGTATCTGAAGTTC+GGG - chr1_4:64981995-64982014 Msa0177750:intron 35.0%
!! ATGCAATTGATGATGATCGA+AGG + chr1_4:64982096-64982115 None:intergenic 35.0%
AGGATAGTTACATGGTTAAC+AGG + chr1_4:64982139-64982158 None:intergenic 35.0%
GCCTATATAGGATAGTTACA+TGG + chr1_4:64982147-64982166 None:intergenic 35.0%
TCAAAGTGAAGAGCCTATAT+AGG + chr1_4:64982159-64982178 None:intergenic 35.0%
TATATAGGCTCTTCACTTTG+AGG - chr1_4:64982158-64982177 Msa0177750:CDS 35.0%
TACTTCTCTTTGTAACATGG+TGG + chr1_4:64982246-64982265 None:intergenic 35.0%
! GTGTTTTCAATCACAGATAG+TGG - chr1_4:64982289-64982308 Msa0177750:intron 35.0%
ATTTGTGTTAGCATGATAGC+AGG + chr1_4:64982576-64982595 None:intergenic 35.0%
! TTTCTAGAAGGATACAGAGA+AGG - chr1_4:64982758-64982777 Msa0177750:intron 35.0%
CCCACTAAATGAGTTCTTTA+TGG + chr1_4:64982789-64982808 None:intergenic 35.0%
TGGATAAATTGCATCAGTGA+TGG + chr1_4:64982812-64982831 None:intergenic 35.0%
ATCATCTCCTTTACTACCTA+AGG + chr1_4:64982903-64982922 None:intergenic 35.0%
TTAGGTAGTAAAGGAGATGA+TGG - chr1_4:64982902-64982921 Msa0177750:intron 35.0%
TTTACACATACCAAAAGGCA+TGG + chr1_4:64983086-64983105 None:intergenic 35.0%
!! TGGCATTGATGAAATGAAAG+TGG - chr1_4:64983225-64983244 Msa0177750:five_prime_UTR 35.0%
! ACAAGCCTCTGTTTTGTGTT+TGG - chr1_4:64977589-64977608 Msa0177750:three_prime_UTR 40.0%
TGGATCCAAACACAAAACAG+AGG + chr1_4:64977597-64977616 None:intergenic 40.0%
! GCTGAACCATTATCGATTGA+TGG - chr1_4:64977694-64977713 Msa0177750:three_prime_UTR 40.0%
GATGTGATCGAAGGATGAAA+TGG + chr1_4:64977758-64977777 None:intergenic 40.0%
TTCATCCTTCGATCACATCT+TGG - chr1_4:64977759-64977778 Msa0177750:CDS 40.0%
ATCAACCAAGATGTGATCGA+AGG + chr1_4:64977767-64977786 None:intergenic 40.0%
GCATACTACTCTAACTCTCA+AGG + chr1_4:64978027-64978046 None:intergenic 40.0%
! AATGGACATCTTTGGTGGTT+TGG - chr1_4:64978060-64978079 Msa0177750:intron 40.0%
AATTAGGATTATGCGTGTCG+CGG + chr1_4:64978463-64978482 None:intergenic 40.0%
! CAACATCGTGTTTTCTTGCA+AGG + chr1_4:64978673-64978692 None:intergenic 40.0%
AGCAGAATCTGAATCGAGAA+TGG + chr1_4:64978911-64978930 None:intergenic 40.0%
!! TGTGGCAAAGGATTTTTCAG+AGG - chr1_4:64979047-64979066 Msa0177750:intron 40.0%
!! GGATTTTTCAGAGGATCTCA+TGG - chr1_4:64979056-64979075 Msa0177750:intron 40.0%
!! GCTCATTGTACAGTGGATTA+AGG + chr1_4:64979119-64979138 None:intergenic 40.0%
TCTTTAAGCAGGGGCTTATT+AGG - chr1_4:64979424-64979443 Msa0177750:CDS 40.0%
CTTTAAGCAGGGGCTTATTA+GGG - chr1_4:64979425-64979444 Msa0177750:CDS 40.0%
!! AGGTTCTTTTGGAAGAACAC+AGG - chr1_4:64979532-64979551 Msa0177750:intron 40.0%
TTGGAAGAACACAGGTAGAA+AGG - chr1_4:64979540-64979559 Msa0177750:intron 40.0%
TGGAAGAACACAGGTAGAAA+GGG - chr1_4:64979541-64979560 Msa0177750:intron 40.0%
ACTGGAAAATTCCAGTGTGA+GGG + chr1_4:64979629-64979648 None:intergenic 40.0%
! AGGTCCATGTTTTCTGTAGA+TGG + chr1_4:64979677-64979696 None:intergenic 40.0%
TGTCCCTATTTAAGTAGTGC+AGG + chr1_4:64979722-64979741 None:intergenic 40.0%
! TCTGTTGGCTGTTACTTGTT+AGG + chr1_4:64979757-64979776 None:intergenic 40.0%
GGGAATGTTAATGATGTGCA+AGG + chr1_4:64979878-64979897 None:intergenic 40.0%
ATGTAAGGAGAGTAGGTGTT+GGG + chr1_4:64979898-64979917 None:intergenic 40.0%
GAGACACTTCCCAGTATATA+AGG + chr1_4:64980249-64980268 None:intergenic 40.0%
!!! GGCTGCTGCTTTTTTCTTTT+TGG - chr1_4:64980447-64980466 Msa0177750:intron 40.0%
GGCAGAAGAACTGTTAAACA+AGG - chr1_4:64980750-64980769 Msa0177750:intron 40.0%
TTCCAGCTCTTGGTTTCTTT+AGG - chr1_4:64980781-64980800 Msa0177750:intron 40.0%
! AAGGATTTTCTTGTCAGGGT+AGG - chr1_4:64980925-64980944 Msa0177750:intron 40.0%
CAGATAAGCTCACAACATCT+TGG + chr1_4:64981061-64981080 None:intergenic 40.0%
!! AGTTGATGAAAGCTGATGGT+AGG - chr1_4:64981313-64981332 Msa0177750:intron 40.0%
TGAGTATCTTTCGGTAAGTC+TGG - chr1_4:64981530-64981549 Msa0177750:intron 40.0%
!! CTTGGTTACTTTGAGATGAG+TGG - chr1_4:64981697-64981716 Msa0177750:CDS 40.0%
AGTTAGATGGCATGAATGTC+AGG + chr1_4:64981742-64981761 None:intergenic 40.0%
AATTTAGCAACGTGCGTGAA+TGG - chr1_4:64981792-64981811 Msa0177750:CDS 40.0%
! ACATTGGTATCTGAAGTTCG+GGG - chr1_4:64981996-64982015 Msa0177750:intron 40.0%
GTAACATGGTGGTCAATAGA+GGG + chr1_4:64982235-64982254 None:intergenic 40.0%
TGTAACATGGTGGTCAATAG+AGG + chr1_4:64982236-64982255 None:intergenic 40.0%
ATAACGCTACTGTAGCAAAG+TGG + chr1_4:64982439-64982458 None:intergenic 40.0%
!! GTTGGTTCAGAAAGCATTGA+AGG - chr1_4:64982707-64982726 Msa0177750:intron 40.0%
!! TTCAGAAAGCATTGAAGGAG+AGG - chr1_4:64982712-64982731 Msa0177750:intron 40.0%
!! GAGAGTACCAAACCAAGAAA+AGG - chr1_4:64982934-64982953 Msa0177750:intron 40.0%
ATGGTTCAGCACGACAAAAG+TGG + chr1_4:64977684-64977703 None:intergenic 45.0%
! TGAAATGGCGGAATCGAAGT+TGG + chr1_4:64977743-64977762 None:intergenic 45.0%
GTGATCGAAGGATGAAATGG+CGG + chr1_4:64977755-64977774 None:intergenic 45.0%
! TGGTTGATTTCTACGCTCCT+TGG - chr1_4:64977779-64977798 Msa0177750:CDS 45.0%
!! GTCGTATGAGTGCCATTTCA+AGG - chr1_4:64978359-64978378 Msa0177750:intron 45.0%
GACACTCATGTGACACATGT+CGG + chr1_4:64978435-64978454 None:intergenic 45.0%
GACATGTGTCACATGAGTGT+CGG - chr1_4:64978434-64978453 Msa0177750:intron 45.0%
ATTAGGATTATGCGTGTCGC+GGG + chr1_4:64978462-64978481 None:intergenic 45.0%
TGTCTTACAGTTAGATGCGG+CGG - chr1_4:64978580-64978599 Msa0177750:intron 45.0%
TTGGTCCGCGATATTCAGTT+GGG + chr1_4:64978834-64978853 None:intergenic 45.0%
! TGCATGGTTTTCTGTGGCAA+AGG - chr1_4:64979035-64979054 Msa0177750:intron 45.0%
CTTCGATAAGATTCCTGCCT+TGG - chr1_4:64979089-64979108 Msa0177750:intron 45.0%
!! CAGTGGATTAAGGGAAACCA+AGG + chr1_4:64979109-64979128 None:intergenic 45.0%
GTGTTACGCTCATTGTACAG+TGG + chr1_4:64979126-64979145 None:intergenic 45.0%
GACTGGAAAATTCCAGTGTG+AGG + chr1_4:64979630-64979649 None:intergenic 45.0%
! TTGGCTGTTACTTGTTAGGC+TGG + chr1_4:64979753-64979772 None:intergenic 45.0%
CATGTAAGGAGAGTAGGTGT+TGG + chr1_4:64979899-64979918 None:intergenic 45.0%
CTCTTCTACATGGTCCCTTT+GGG - chr1_4:64979969-64979988 Msa0177750:intron 45.0%
TCCAAAGATGGGGTTGACAT+TGG - chr1_4:64980060-64980079 Msa0177750:intron 45.0%
ACCAATGTCAACCCCATCTT+TGG + chr1_4:64980064-64980083 None:intergenic 45.0%
TGGTTAAACTCCCAACCACT+TGG - chr1_4:64980080-64980099 Msa0177750:intron 45.0%
! AACCAGCAAGAGTGTAGTTC+AGG + chr1_4:64980407-64980426 None:intergenic 45.0%
! TTTGGGTTTGTCACTGTGTC+TGG - chr1_4:64980611-64980630 Msa0177750:intron 45.0%
!! TTCGGTGCATTTTGCTTGAC+TGG - chr1_4:64980724-64980743 Msa0177750:intron 45.0%
! TGCATTTTGCTTGACTGGAG+TGG - chr1_4:64980729-64980748 Msa0177750:intron 45.0%
! GGGTCTTTATTTCCAGCTCT+TGG - chr1_4:64980771-64980790 Msa0177750:intron 45.0%
CTCCTAAAGAAACCAAGAGC+TGG + chr1_4:64980786-64980805 None:intergenic 45.0%
CAGCTCTTGGTTTCTTTAGG+AGG - chr1_4:64980784-64980803 Msa0177750:intron 45.0%
TTCAGCTTCAGTTACGTTCC+AGG + chr1_4:64980873-64980892 None:intergenic 45.0%
!! GGTTACTTTGAGATGAGTGG+TGG - chr1_4:64981700-64981719 Msa0177750:CDS 45.0%
!!! TCACAGGCTCCTTATTTTCC+AGG + chr1_4:64981863-64981882 None:intergenic 45.0%
AGGAGCCTGTGAACTACTAT+TGG - chr1_4:64981871-64981890 Msa0177750:CDS 45.0%
TCACACATTCTCTTGGTCCT+AGG - chr1_4:64981966-64981985 Msa0177750:CDS 45.0%
GGTCCTAGGATTCCAAACAT+TGG - chr1_4:64981980-64981999 Msa0177750:intron 45.0%
TATATCCTCGCCAATTGGTG+AGG + chr1_4:64982024-64982043 None:intergenic 45.0%
GCTCATATATCCTCGCCAAT+TGG + chr1_4:64982029-64982048 None:intergenic 45.0%
! AGTGCTGCTATAGCTGCTAT+TGG - chr1_4:64982459-64982478 Msa0177750:intron 45.0%
TAGCTGCTATTGGACAACAC+TGG - chr1_4:64982469-64982488 Msa0177750:intron 45.0%
!! AAGCATTGAAGGAGAGGATC+AGG - chr1_4:64982718-64982737 Msa0177750:intron 45.0%
! AGCATTGAAGGAGAGGATCA+GGG - chr1_4:64982719-64982738 Msa0177750:intron 45.0%
! CTCTTTTCTTCCACCTTCTG+AGG + chr1_4:64982981-64983000 None:intergenic 45.0%
GATTTCTACGCTCCTTGGTG+TGG - chr1_4:64977784-64977803 Msa0177750:CDS 50.0%
TTAGGATTATGCGTGTCGCG+GGG + chr1_4:64978461-64978480 None:intergenic 50.0%
TCCTTCAAGGCTGCAAGTAC+AGG + chr1_4:64978608-64978627 None:intergenic 50.0%
CTTGGTCCGCGATATTCAGT+TGG + chr1_4:64978835-64978854 None:intergenic 50.0%
CAACTGAATATCGCGGACCA+AGG - chr1_4:64978833-64978852 Msa0177750:intron 50.0%
GGATTAAGGGAAACCAAGGC+AGG + chr1_4:64979105-64979124 None:intergenic 50.0%
AAGGGACCATGTAGAAGAGG+CGG + chr1_4:64979968-64979987 None:intergenic 50.0%
CCAAAGGGACCATGTAGAAG+AGG + chr1_4:64979971-64979990 None:intergenic 50.0%
CCTCTTCTACATGGTCCCTT+TGG - chr1_4:64979968-64979987 Msa0177750:intron 50.0%
TTCTACATGGTCCCTTTGGG+CGG - chr1_4:64979972-64979991 Msa0177750:intron 50.0%
TATGCTTGAAGCCGCCCAAA+GGG + chr1_4:64979986-64980005 None:intergenic 50.0%
AGGCCTACAGTCTTGCTTGT+GGG + chr1_4:64980362-64980381 None:intergenic 50.0%
! TACCAGCAAAAGCGTAGTGC+AGG + chr1_4:64980382-64980401 None:intergenic 50.0%
! TGCACTACGCTTTTGCTGGT+AGG - chr1_4:64980381-64980400 Msa0177750:intron 50.0%
TAGGATACAGGCACAGCCAA+AGG + chr1_4:64981282-64981301 None:intergenic 50.0%
!! TGCGTGAATGGTGTCATGAG+TGG - chr1_4:64981804-64981823 Msa0177750:CDS 50.0%
CGTGTCCAACACGTGTGTGT+CGG + chr1_4:64977996-64978015 None:intergenic 55.0%
CGACACACACGTGTTGGACA+CGG - chr1_4:64977994-64978013 Msa0177750:CDS 55.0%
GACACACACGTGTTGGACAC+GGG - chr1_4:64977995-64978014 Msa0177750:CDS 55.0%
GCCTGTACTTGCAGCCTTGA+AGG - chr1_4:64978604-64978623 Msa0177750:intron 55.0%
GGGGTCCCAACTGAATATCG+CGG - chr1_4:64978826-64978845 Msa0177750:intron 55.0%
GGAAGCTACTTCCCTCACAC+TGG - chr1_4:64979615-64979634 Msa0177750:intron 55.0%
CTATGCTTGAAGCCGCCCAA+AGG + chr1_4:64979987-64980006 None:intergenic 55.0%
TCCCAACCACTTGGTCGAAG+AGG - chr1_4:64980089-64980108 Msa0177750:intron 55.0%
GCCTCTTCGACCAAGTGGTT+GGG + chr1_4:64980093-64980112 None:intergenic 55.0%
ACCCCCACAAGCAAGACTGT+AGG - chr1_4:64980356-64980375 Msa0177750:intron 55.0%
GCCTACAGTCTTGCTTGTGG+GGG + chr1_4:64980360-64980379 None:intergenic 55.0%
GGCCTACAGTCTTGCTTGTG+GGG + chr1_4:64980361-64980380 None:intergenic 55.0%
CAGGCCTACAGTCTTGCTTG+TGG + chr1_4:64980363-64980382 None:intergenic 55.0%
GGCCTGAACTACACTCTTGC+TGG - chr1_4:64980402-64980421 Msa0177750:intron 55.0%
!! CCTTCTGAGGTAGAGCTGCT+TGG + chr1_4:64982968-64982987 None:intergenic 55.0%
CCAAGCAGCTCTACCTCAGA+AGG - chr1_4:64982965-64982984 Msa0177750:CDS 55.0%
AGCAGCTCTACCTCAGAAGG+TGG - chr1_4:64982968-64982987 Msa0177750:CDS 55.0%
CGCTTGCAGTGACCACACCA+AGG + chr1_4:64977799-64977818 None:intergenic 60.0%
CTGCAAGCGTCTCTCTCCTG+AGG - chr1_4:64977810-64977829 Msa0177750:CDS 60.0%
GGACACCGACACACACGTGT+TGG - chr1_4:64977988-64978007 Msa0177750:CDS 60.0%
CCATGTAGAAGAGGCGGTGC+TGG + chr1_4:64979962-64979981 None:intergenic 60.0%
CCAGCACCGCCTCTTCTACA+TGG - chr1_4:64979959-64979978 Msa0177750:intron 60.0%
CGCCTCTTCGACCAAGTGGT+TGG + chr1_4:64980094-64980113 None:intergenic 60.0%
TTGGCGCCTCTTCGACCAAG+TGG + chr1_4:64980098-64980117 None:intergenic 60.0%
! GGCCTGCACTACGCTTTTGC+TGG - chr1_4:64980377-64980396 Msa0177750:intron 60.0%
! GTTCGGGGCACCTCACCAAT+TGG - chr1_4:64982011-64982030 Msa0177750:intron 60.0%
GGGCACCTCACCAATTGGCG+AGG - chr1_4:64982016-64982035 Msa0177750:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 64977520 64983262 64977520 ID=Msa0177750;Name=Msa0177750
chr1_4 mRNA 64977520 64983262 64977520 ID=Msa0177750-mRNA-1;Parent=Msa0177750;Name=Msa0177750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=120|1|1|1|1|1|5|235|430
chr1_4 exon 64977520 64978078 64977520 ID=Msa0177750-mRNA-1:exon:21097;Parent=Msa0177750-mRNA-1
chr1_4 exon 64979240 64979541 64979240 ID=Msa0177750-mRNA-1:exon:21096;Parent=Msa0177750-mRNA-1
chr1_4 exon 64981617 64981987 64981617 ID=Msa0177750-mRNA-1:exon:21095;Parent=Msa0177750-mRNA-1
chr1_4 exon 64982089 64982192 64982089 ID=Msa0177750-mRNA-1:exon:21094;Parent=Msa0177750-mRNA-1
chr1_4 exon 64982951 64983262 64982951 ID=Msa0177750-mRNA-1:exon:21093;Parent=Msa0177750-mRNA-1
chr1_4 five_prime_UTR 64983143 64983262 64983143 ID=Msa0177750-mRNA-1:five_prime_utr;Parent=Msa0177750-mRNA-1
chr1_4 CDS 64982951 64983142 64982951 ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1
chr1_4 CDS 64982089 64982192 64982089 ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1
chr1_4 CDS 64981617 64981987 64981617 ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1
chr1_4 CDS 64979240 64979541 64979240 ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1
chr1_4 CDS 64977755 64978078 64977755 ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1
chr1_4 three_prime_UTR 64977520 64977754 64977520 ID=Msa0177750-mRNA-1:three_prime_utr;Parent=Msa0177750-mRNA-1
Gene Sequence

>Msa0177750

ATGAAGATTTGCTTTGTTATTTTTTGTATTGTTTCATCGATCCACTTTTGTCGTGCTGAACCATTATCGATTGATGGAAAGGTGTTAATTCTCGACGAATCCAACTTCGATTCCGCCATTTCATCCTTCGATCACATCTTGGTTGATTTCTACGCTCCTTGGTGTGGTCACTGCAAGCGTCTCTCTCCTGAGTTAGATGCGGCGGCGCCTGTACTTGCAGCCTTGAAGGAACCTATACTCATTGCAAAAGTAGATGCAGACAAGCATACTAGCCTTGCAAGAAAACACGATGTTGATGCCTATCCAACCATTTTGCTGTTTAATCATGGGGTCCCAACTGAATATCGCGGACCAAGGAAAGCTGATTTACTTGTTCGTTATCTTAAGAAATTCGCTGCTTCTGATGTTTCCATTCTCGATTCAGATTCTGCTGTGAATAATTTTGTTGAAGAAGCTGGTACTTTTTTCCCAGTATATATAGGTTTTGGGTTGGAAAGTTCATTGATAGAAAAGTTCGGCAAAAAGTATAAGAAAAATGCATGGTTTTCTGTGGCAAAGGATTTTTCAGAGGATCTCATGGTAACATATGACTTCGATAAGATTCCTGCCTTGGTTTCCCTTAATCCACTGTACAATGAGCGTAACACATTTTATGGTCCATTTGAAGATGATTTTTTGGAAGACTTTATAAAACAAAATCTCATTCCTTTGGCTGTGCCTGTATCCTATGAGACACTTAAGTTGATGAAAGCTGATGGTAGGAAAATAGTTTTGACTATTGTGGACGATGAAAGTGAAGAAAGTTCCAAAGAACTTGTTAAGTTATTGAGGGCTGCTGCATCTGCAAATCGTGACTTAATATTTGGTTATGTTGGAGTTAAACAGCTGGACGAATTTGCTGATAAATTTGATACTACTACTAAACTACCAAAAATGGTCATTTGGGATAAAGAAGATGAGTATCTTTCGGTAGTTGGTTCAGAAAGCATTGAAGGAGAGGATCAGGGAACACAAATCACTAAATTTCTAGAAGGATACAGAGAAGGAAGAACCATAAAGAACTCATTTAGTGGGCCATCACTGATGCAATTTATCCATAGATCTTTCGACATTAGAATGGTGTACATCGTTGTTTTTATGATTGCAGTGTTAATGCTTATTCAAACCTTAGGTAGTAAAGGAGATGATGGTGAATATCAGAGAGTACCAAACCAAGAAAAGGTTAATCAACCAAGCAGCTCTACCTCAGAAGGTGGAAGAAAAGAGTATAAAGAAGGTGACAAAGAAGATTAA

Protein sequence

>Msa0177750

MKICFVIFCIVSSIHFCRAEPLSIDGKVLILDESNFDSAISSFDHILVDFYAPWCGHCKRLSPELDAAAPVLAALKEPILIAKVDADKHTSLARKHDVDAYPTILLFNHGVPTEYRGPRKADLLVRYLKKFAASDVSILDSDSAVNNFVEEAGTFFPVYIGFGLESSLIEKFGKKYKKNAWFSVAKDFSEDLMVTYDFDKIPALVSLNPLYNERNTFYGPFEDDFLEDFIKQNLIPLAVPVSYETLKLMKADGRKIVLTIVDDESEESSKELVKLLRAAASANRDLIFGYVGVKQLDEFADKFDTTTKLPKMVIWDKEDEYLSVVGSESIEGEDQGTQITKFLEGYREGRTIKNSFSGPSLMQFIHRSFDIRMVYIVVFMIAVLMLIQTLGSKGDDGEYQRVPNQEKVNQPSSSTSEGGRKEYKEGDKED*