Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0177750 | sp|Q94F09|PDI52_ARATH | 60.048 | 413 | 160 | 4 | 22 | 430 | 28 | 439 | 1.02e-180 | 514 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0177750 | A0A072VPJ1 | 97.674 | 430 | 10 | 0 | 1 | 430 | 1 | 430 | 0.0 | 864 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0008220 | Msa0177750 | 0.803078 | 4.139376e-49 | -8.615850e-47 |
Msa0031820 | Msa0177750 | 0.837089 | 6.383700e-57 | -8.615850e-47 |
Msa0033880 | Msa0177750 | 0.809003 | 2.344904e-50 | -8.615850e-47 |
Msa0041690 | Msa0177750 | 0.801948 | 7.076511e-49 | -8.615850e-47 |
Msa0057370 | Msa0177750 | 0.811874 | 5.628751e-51 | -8.615850e-47 |
Msa0059890 | Msa0177750 | 0.811501 | 6.782826e-51 | -8.615850e-47 |
Msa0085370 | Msa0177750 | 0.885902 | 5.445811e-72 | -8.615850e-47 |
Msa0126770 | Msa0177750 | 0.831137 | 1.979369e-55 | -8.615850e-47 |
Msa0127850 | Msa0177750 | 0.802715 | 4.918942e-49 | -8.615850e-47 |
Msa0171850 | Msa0177750 | 0.836923 | 7.039505e-57 | -8.615850e-47 |
Msa0174000 | Msa0177750 | 0.826205 | 3.082398e-54 | -8.615850e-47 |
Msa0177750 | Msa0215360 | 0.813675 | 2.270419e-51 | -8.615850e-47 |
Msa0177750 | Msa0263220 | 0.826670 | 2.388624e-54 | -8.615850e-47 |
Msa0177750 | Msa0342010 | 0.816068 | 6.691616e-52 | -8.615850e-47 |
Msa0177750 | Msa0363810 | 0.824310 | 8.653023e-54 | -8.615850e-47 |
Msa0177750 | Msa0411410 | 0.839613 | 1.426828e-57 | -8.615850e-47 |
Msa0177750 | Msa0474700 | 0.800921 | 1.148451e-48 | -8.615850e-47 |
Msa0177750 | Msa0486670 | 0.808929 | 2.432366e-50 | -8.615850e-47 |
Msa0177750 | Msa0549590 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
Msa0177750 | Msa0646130 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
Msa0177750 | Msa0689760 | 0.809236 | 2.090314e-50 | -8.615850e-47 |
Msa0177750 | Msa0716860 | 0.814535 | 1.466436e-51 | -8.615850e-47 |
Msa0177750 | Msa0749400 | 0.823122 | 1.641710e-53 | -8.615850e-47 |
Msa0177750 | Msa0751260 | 0.812159 | 4.877362e-51 | -8.615850e-47 |
Msa0177750 | Msa0795660 | 0.826284 | 2.952153e-54 | -8.615850e-47 |
Msa0177750 | Msa0800700 | 0.803469 | 3.434296e-49 | -8.615850e-47 |
Msa0177750 | Msa0861830 | 0.806274 | 8.906836e-50 | -8.615850e-47 |
Msa0177750 | Msa0909010 | 0.912970 | 1.056613e-83 | -8.615850e-47 |
Msa0177750 | Msa0981430 | 0.800997 | 1.108339e-48 | -8.615850e-47 |
Msa0177750 | Msa1027250 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
Msa0177750 | Msa1027360 | 0.809078 | 2.260550e-50 | -8.615850e-47 |
Msa0177750 | Msa1129690 | 0.805097 | 1.573657e-49 | -8.615850e-47 |
Msa0177750 | Msa1181170 | -0.805343 | 1.397254e-49 | -8.615850e-47 |
Msa0177750 | Msa1211340 | 0.819603 | 1.065007e-52 | -8.615850e-47 |
Msa0177750 | Msa1236390 | 0.819343 | 1.220602e-52 | -8.615850e-47 |
Msa0177750 | Msa1259640 | 0.824063 | 9.888987e-54 | -8.615850e-47 |
Msa0177750 | Msa1329450 | 0.805719 | 1.165426e-49 | -8.615850e-47 |
Msa0177750 | Msa1329790 | 0.823724 | 1.187366e-53 | -8.615850e-47 |
Msa0177750 | Msa1420250 | 0.806404 | 8.363415e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0177750 | MtrunA17_Chr1g0200731 | 97.674 | 430 | 10 | 0 | 1 | 430 | 68 | 497 | 0.0 | 863 |
Msa0177750 | MtrunA17_Chr3g0124851 | 45.522 | 134 | 65 | 4 | 3 | 130 | 10 | 141 | 2.09e-28 | 117 |
Msa0177750 | MtrunA17_Chr3g0124851 | 29.412 | 119 | 79 | 3 | 16 | 130 | 365 | 482 | 8.30e-11 | 63.9 |
Msa0177750 | MtrunA17_Chr2g0326581 | 29.619 | 341 | 202 | 10 | 28 | 350 | 80 | 400 | 1.95e-22 | 99.8 |
Msa0177750 | MtrunA17_Chr1g0194961 | 39.316 | 117 | 68 | 2 | 31 | 145 | 34 | 149 | 6.74e-21 | 93.6 |
Msa0177750 | MtrunA17_Chr4g0029181 | 30.868 | 311 | 187 | 9 | 20 | 315 | 94 | 391 | 1.45e-19 | 91.3 |
Msa0177750 | MtrunA17_Chr7g0271721 | 35.385 | 130 | 81 | 2 | 11 | 138 | 9 | 137 | 1.36e-18 | 86.7 |
Msa0177750 | MtrunA17_Chr7g0271721 | 41.441 | 111 | 53 | 4 | 23 | 128 | 139 | 242 | 9.43e-15 | 75.1 |
Msa0177750 | MtrunA17_Chr5g0438731 | 40.000 | 115 | 59 | 4 | 28 | 139 | 61 | 168 | 9.79e-17 | 82.0 |
Msa0177750 | MtrunA17_Chr5g0438731 | 28.700 | 223 | 135 | 5 | 31 | 232 | 195 | 414 | 6.05e-15 | 76.6 |
Msa0177750 | MtrunA17_Chr4g0041801 | 33.058 | 121 | 66 | 2 | 29 | 134 | 144 | 264 | 2.57e-14 | 74.7 |
Msa0177750 | MtrunA17_Chr2g0287471 | 39.130 | 115 | 61 | 5 | 28 | 140 | 30 | 137 | 7.10e-14 | 72.4 |
Msa0177750 | MtrunA17_Chr1g0201781 | 35.714 | 98 | 58 | 3 | 34 | 129 | 68 | 162 | 8.91e-14 | 69.3 |
Msa0177750 | MtrunA17_Chr2g0331681 | 28.194 | 227 | 135 | 7 | 31 | 242 | 67 | 280 | 9.63e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0177750 | AT1G35620.1 | 60.048 | 413 | 160 | 4 | 22 | 430 | 28 | 439 | 0.0 | 514 |
Msa0177750 | AT1G21750.2 | 41.791 | 134 | 69 | 4 | 5 | 130 | 6 | 138 | 7.58e-26 | 109 |
Msa0177750 | AT1G21750.1 | 41.791 | 134 | 69 | 4 | 5 | 130 | 6 | 138 | 8.29e-26 | 109 |
Msa0177750 | AT1G77510.1 | 33.929 | 224 | 123 | 8 | 28 | 237 | 31 | 243 | 2.79e-24 | 105 |
Msa0177750 | AT1G77510.1 | 34.615 | 104 | 64 | 3 | 29 | 130 | 376 | 477 | 9.27e-11 | 64.3 |
Msa0177750 | AT3G54960.2 | 28.662 | 314 | 202 | 10 | 15 | 315 | 86 | 390 | 4.91e-23 | 101 |
Msa0177750 | AT3G54960.1 | 28.662 | 314 | 202 | 10 | 15 | 315 | 86 | 390 | 7.27e-23 | 101 |
Msa0177750 | AT5G60640.2 | 28.239 | 301 | 197 | 8 | 24 | 313 | 100 | 392 | 2.76e-21 | 96.7 |
Msa0177750 | AT5G60640.1 | 28.239 | 301 | 197 | 8 | 24 | 313 | 100 | 392 | 5.09e-21 | 95.9 |
Msa0177750 | AT2G47470.2 | 40.000 | 110 | 63 | 2 | 31 | 138 | 28 | 136 | 1.17e-20 | 91.7 |
Msa0177750 | AT2G47470.2 | 35.780 | 109 | 66 | 3 | 23 | 128 | 138 | 245 | 2.25e-15 | 76.3 |
Msa0177750 | AT2G47470.3 | 40.000 | 110 | 63 | 2 | 31 | 138 | 28 | 136 | 2.50e-20 | 91.7 |
Msa0177750 | AT2G47470.3 | 37.500 | 104 | 61 | 3 | 28 | 128 | 143 | 245 | 4.17e-15 | 76.3 |
Msa0177750 | AT2G47470.4 | 40.000 | 110 | 63 | 2 | 31 | 138 | 28 | 136 | 2.63e-20 | 92.0 |
Msa0177750 | AT2G47470.4 | 37.500 | 104 | 61 | 3 | 28 | 128 | 143 | 245 | 3.77e-15 | 76.6 |
Msa0177750 | AT2G47470.1 | 40.000 | 110 | 63 | 2 | 31 | 138 | 28 | 136 | 2.95e-20 | 92.0 |
Msa0177750 | AT2G47470.1 | 37.500 | 104 | 61 | 3 | 28 | 128 | 143 | 245 | 4.05e-15 | 77.0 |
Msa0177750 | AT5G60640.3 | 28.571 | 266 | 174 | 7 | 24 | 281 | 100 | 357 | 1.91e-19 | 90.9 |
Msa0177750 | AT2G32920.1 | 34.507 | 142 | 77 | 5 | 3 | 142 | 14 | 141 | 1.91e-16 | 81.6 |
Msa0177750 | AT2G32920.1 | 27.027 | 222 | 138 | 5 | 31 | 231 | 167 | 385 | 1.22e-13 | 72.8 |
Msa0177750 | AT1G04980.1 | 34.266 | 143 | 79 | 6 | 3 | 142 | 13 | 143 | 2.44e-15 | 78.2 |
Msa0177750 | AT1G04980.1 | 27.753 | 227 | 132 | 6 | 31 | 232 | 172 | 391 | 3.20e-15 | 77.8 |
Msa0177750 | AT1G52260.1 | 29.279 | 222 | 135 | 7 | 28 | 237 | 79 | 290 | 1.38e-13 | 73.2 |
Msa0177750 | AT3G16110.1 | 24.255 | 235 | 162 | 4 | 18 | 242 | 66 | 294 | 2.37e-13 | 72.4 |
Msa0177750 | AT1G76760.1 | 34.513 | 113 | 69 | 3 | 18 | 129 | 57 | 165 | 3.40e-13 | 67.8 |
Msa0177750 | AT1G43560.1 | 41.026 | 78 | 42 | 2 | 34 | 110 | 66 | 140 | 3.93e-12 | 64.7 |
Find 83 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCACTAAATGAGTTCTTTA+TGG | 0.104563 | 1_4:+64977974 | None:intergenic |
GCAAATCGTGACTTAATATT+TGG | 0.148394 | 1_4:-64979343 | Msa0177750:CDS |
TTCCCAGTATATATAGGTTT+TGG | 0.148916 | 1_4:-64981796 | Msa0177750:CDS |
CAATAACTTAACAAGTTCTT+TGG | 0.226371 | 1_4:+64979381 | None:intergenic |
GCTCATTGTACAGTGGATTA+AGG | 0.240385 | 1_4:+64981644 | None:intergenic |
AACCCAAAACCTATATATAC+TGG | 0.277212 | 1_4:+64981793 | None:intergenic |
ATAAGAACATAAGTTTAGTT+TGG | 0.301329 | 1_4:+64977614 | None:intergenic |
TTCTAATGTCGAAAGATCTA+TGG | 0.336526 | 1_4:+64977931 | None:intergenic |
ACCTTTCCATCAATCGATAA+TGG | 0.340984 | 1_4:+64983060 | None:intergenic |
TTTAGAATTACCATGCCTTT+TGG | 0.344568 | 1_4:-64977687 | Msa0177750:three_prime_UTR |
AAGCATTGAAGGAGAGGATC+AGG | 0.355842 | 1_4:-64978042 | Msa0177750:CDS |
AAAACAAAATCTCATTCCTT+TGG | 0.358538 | 1_4:-64979497 | Msa0177750:CDS |
CCCATGATTAAACAGCAAAA+TGG | 0.374127 | 1_4:+64981954 | None:intergenic |
GACTTAATATTTGGTTATGT+TGG | 0.399153 | 1_4:-64979334 | Msa0177750:CDS |
CATCAACTTAAGTGTCTCAT+AGG | 0.401128 | 1_4:+64979462 | None:intergenic |
CTTCGATAAGATTCCTGCCT+TGG | 0.402929 | 1_4:-64981671 | Msa0177750:CDS |
GCTGAACCATTATCGATTGA+TGG | 0.403240 | 1_4:-64983066 | Msa0177750:CDS |
CTCATTGTACAGTGGATTAA+GGG | 0.409749 | 1_4:+64981645 | None:intergenic |
AAGAACTTGTTAAGTTATTG+AGG | 0.421672 | 1_4:-64979378 | Msa0177750:CDS |
GCCTGTACTTGCAGCCTTGA+AGG | 0.424459 | 1_4:-64982156 | Msa0177750:CDS |
GAAATAAACTAACCTTCAAA+TGG | 0.433269 | 1_4:+64981604 | None:intergenic |
TTAATGCTTATTCAAACCTT+AGG | 0.438716 | 1_4:-64977876 | Msa0177750:CDS |
TAAAGAAGATGAGTATCTTT+CGG | 0.440421 | 1_4:-64979239 | Msa0177750:intron |
CAAATCACTAAATTTCTAGA+AGG | 0.440849 | 1_4:-64978014 | Msa0177750:CDS |
ATCATCTCCTTTACTACCTA+AGG | 0.442205 | 1_4:+64977860 | None:intergenic |
TTCATCCTTCGATCACATCT+TGG | 0.449806 | 1_4:-64983001 | Msa0177750:CDS |
TCCTTCAAGGCTGCAAGTAC+AGG | 0.452113 | 1_4:+64982155 | None:intergenic |
AGAACTTGTTAAGTTATTGA+GGG | 0.452218 | 1_4:-64979377 | Msa0177750:CDS |
AACATAAGTTTAGTTTGGAC+AGG | 0.455471 | 1_4:+64977619 | None:intergenic |
GATCATCACTTAATTATAGC+TGG | 0.455997 | 1_4:-64977711 | Msa0177750:three_prime_UTR |
CCTTCTGAGGTAGAGCTGCT+TGG | 0.459228 | 1_4:+64977795 | None:intergenic |
CTTGGTCCGCGATATTCAGT+TGG | 0.466847 | 1_4:+64981928 | None:intergenic |
TTAGTTATTTCTTGACATGA+AGG | 0.469957 | 1_4:-64977578 | Msa0177750:three_prime_UTR |
TGGTTGATTTCTACGCTCCT+TGG | 0.470298 | 1_4:-64982981 | Msa0177750:CDS |
ATTCAAACCTTAGGTAGTAA+AGG | 0.472205 | 1_4:-64977867 | Msa0177750:CDS |
TTGGTCCGCGATATTCAGTT+GGG | 0.476722 | 1_4:+64981929 | None:intergenic |
AGCAGAATCTGAATCGAGAA+TGG | 0.476767 | 1_4:+64981852 | None:intergenic |
AATGAGTATAGGTTCCTTCA+AGG | 0.477797 | 1_4:+64982142 | None:intergenic |
ACCATAAAGAACTCATTTAG+TGG | 0.489496 | 1_4:-64977975 | Msa0177750:CDS |
TAGATCTTTCGACATTAGAA+TGG | 0.490056 | 1_4:-64977928 | Msa0177750:CDS |
GATGTGATCGAAGGATGAAA+TGG | 0.493338 | 1_4:+64983005 | None:intergenic |
TTAAGTGTCTCATAGGATAC+AGG | 0.508310 | 1_4:+64979469 | None:intergenic |
TGAAATGGCGGAATCGAAGT+TGG | 0.511617 | 1_4:+64983020 | None:intergenic |
AGTTCATTGATAGAAAAGTT+CGG | 0.512411 | 1_4:-64981766 | Msa0177750:CDS |
GGAAGAAAAGAGTATAAAGA+AGG | 0.513510 | 1_4:-64977771 | Msa0177750:CDS |
GTTGGTTCAGAAAGCATTGA+AGG | 0.515841 | 1_4:-64978053 | Msa0177750:CDS |
ACAAGTAAATCAGCTTTCCT+TGG | 0.516496 | 1_4:+64981910 | None:intergenic |
AAACAGCAAAATGGTTGGAT+AGG | 0.519002 | 1_4:+64981963 | None:intergenic |
TGATTAAACAGCAAAATGGT+TGG | 0.523489 | 1_4:+64981958 | None:intergenic |
GAGAGTACCAAACCAAGAAA+AGG | 0.523714 | 1_4:-64977826 | Msa0177750:CDS |
AAATATTTACACATACCAAA+AGG | 0.527479 | 1_4:+64977672 | None:intergenic |
GGATTAAGGGAAACCAAGGC+AGG | 0.543644 | 1_4:+64981658 | None:intergenic |
ATGGTTCAGCACGACAAAAG+TGG | 0.545324 | 1_4:+64983079 | None:intergenic |
AATTAATTATAACATATACA+AGG | 0.551019 | 1_4:-64977733 | Msa0177750:three_prime_UTR |
TTAGGTAGTAAAGGAGATGA+TGG | 0.552978 | 1_4:-64977858 | Msa0177750:CDS |
TTCTGTCTTACAGTTAGATG+CGG | 0.553009 | 1_4:-64982183 | Msa0177750:intron |
ACCATTATCGATTGATGGAA+AGG | 0.554690 | 1_4:-64983061 | Msa0177750:CDS |
TTCAGAAAGCATTGAAGGAG+AGG | 0.562407 | 1_4:-64978048 | Msa0177750:CDS |
ACCCAAAACCTATATATACT+GGG | 0.565590 | 1_4:+64981794 | None:intergenic |
TTATGTTGGAGTTAAACAGC+TGG | 0.567225 | 1_4:-64979320 | Msa0177750:CDS |
AGTTGATGAAAGCTGATGGT+AGG | 0.573136 | 1_4:-64979447 | Msa0177750:CDS |
GATTTCTACGCTCCTTGGTG+TGG | 0.573164 | 1_4:-64982976 | Msa0177750:CDS |
CCAAGCAGCTCTACCTCAGA+AGG | 0.573325 | 1_4:-64977795 | Msa0177750:CDS |
TAGGATACAGGCACAGCCAA+AGG | 0.591538 | 1_4:+64979481 | None:intergenic |
ATCAACCAAGATGTGATCGA+AGG | 0.597452 | 1_4:+64982996 | None:intergenic |
TGGATAAATTGCATCAGTGA+TGG | 0.598373 | 1_4:+64977951 | None:intergenic |
TTTCTAGAAGGATACAGAGA+AGG | 0.608440 | 1_4:-64978002 | Msa0177750:CDS |
CTTAAGTTGATGAAAGCTGA+TGG | 0.612346 | 1_4:-64979451 | Msa0177750:CDS |
CCATAAAGAACTCATTTAGT+GGG | 0.620397 | 1_4:-64977974 | Msa0177750:CDS |
AGCATTGAAGGAGAGGATCA+GGG | 0.623276 | 1_4:-64978041 | Msa0177750:CDS |
CAACTGAATATCGCGGACCA+AGG | 0.627911 | 1_4:-64981927 | Msa0177750:CDS |
TTTACACATACCAAAAGGCA+TGG | 0.628786 | 1_4:+64977677 | None:intergenic |
AGCAGCTCTACCTCAGAAGG+TGG | 0.629957 | 1_4:-64977792 | Msa0177750:CDS |
CTGCAAGCGTCTCTCTCCTG+AGG | 0.631362 | 1_4:-64982950 | Msa0177750:intron |
TGGCATTGATGAAATGAAAG+TGG | 0.640080 | 1_4:-64977535 | Msa0177750:three_prime_UTR |
TGTCTTACAGTTAGATGCGG+CGG | 0.642474 | 1_4:-64982180 | Msa0177750:intron |
CAGTGGATTAAGGGAAACCA+AGG | 0.642707 | 1_4:+64981654 | None:intergenic |
GTGATCGAAGGATGAAATGG+CGG | 0.654275 | 1_4:+64983008 | None:intergenic |
TGGATCCAAACACAAAACAG+AGG | 0.660550 | 1_4:+64983166 | None:intergenic |
GTGTTACGCTCATTGTACAG+TGG | 0.669544 | 1_4:+64981637 | None:intergenic |
CTTATTTATTACTTTCAACG+TGG | 0.672088 | 1_4:-64977555 | Msa0177750:three_prime_UTR |
CGCTTGCAGTGACCACACCA+AGG | 0.682818 | 1_4:+64982964 | None:intergenic |
GGGGTCCCAACTGAATATCG+CGG | 0.700525 | 1_4:-64981934 | Msa0177750:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAATAAATTATTTAAAGAT+TGG | + | chr1_4:64980335-64980354 | None:intergenic | 10.0% |
!! | CAATCTTTAAATAATTTATT+TGG | - | chr1_4:64980333-64980352 | Msa0177750:intron | 10.0% |
!! | TGATTTATTAGATAATAATT+GGG | + | chr1_4:64980830-64980849 | None:intergenic | 10.0% |
!! | TTGATTTATTAGATAATAAT+TGG | + | chr1_4:64980831-64980850 | None:intergenic | 10.0% |
!! | TAAACTATTTATGAAAAAAT+TGG | + | chr1_4:64982206-64982225 | None:intergenic | 10.0% |
!! | AATTAATTATAACATATACA+AGG | - | chr1_4:64983027-64983046 | Msa0177750:CDS | 10.0% |
!!! | TAAAAAAAAGTTCTAAAACA+AGG | - | chr1_4:64978283-64978302 | Msa0177750:intron | 15.0% |
!! | TTAGTTTATTTCATACATAA+TGG | - | chr1_4:64979167-64979186 | Msa0177750:intron | 15.0% |
!!! | TTATATATTTTTCTTTAAGC+AGG | - | chr1_4:64979413-64979432 | Msa0177750:CDS | 15.0% |
!!! | TATATATTTTTCTTTAAGCA+GGG | - | chr1_4:64979414-64979433 | Msa0177750:CDS | 15.0% |
!! | ATATAATAACTTAACATGTA+AGG | + | chr1_4:64979913-64979932 | None:intergenic | 15.0% |
!!! | ACTAAAGTAATATTTTTTTC+AGG | + | chr1_4:64981562-64981581 | None:intergenic | 15.0% |
!! | TATAAACTTAAAAAATGTGT+TGG | - | chr1_4:64982612-64982631 | Msa0177750:intron | 15.0% |
!! | ATTAATGTAGAAATATGTAT+TGG | + | chr1_4:64982677-64982696 | None:intergenic | 15.0% |
!!! | TATTTCTACATTAATTTTTC+AGG | - | chr1_4:64982682-64982701 | Msa0177750:intron | 15.0% |
!!! | TTGTGTTTTGTTTGATTTTT+CGG | + | chr1_4:64977573-64977592 | None:intergenic | 20.0% |
!!! | CAAAATCAAATTTTGAAAGT+GGG | + | chr1_4:64977885-64977904 | None:intergenic | 20.0% |
!!! | ACAAAATCAAATTTTGAAAG+TGG | + | chr1_4:64977886-64977905 | None:intergenic | 20.0% |
!! | TTTATAACGTGTTACATAAA+AGG | + | chr1_4:64978324-64978343 | None:intergenic | 20.0% |
!!! | AAAAAAGTTTTTCCTTTGTT+TGG | + | chr1_4:64978390-64978409 | None:intergenic | 20.0% |
!!! | ACAAAGGAAAAACTTTTTTT+TGG | - | chr1_4:64978391-64978410 | Msa0177750:intron | 20.0% |
!! | AAGTTAGGAAGAAATAAATA+CGG | + | chr1_4:64978740-64978759 | None:intergenic | 20.0% |
!!! | AAAAGTATAAGAAAAATGCA+TGG | - | chr1_4:64979019-64979038 | Msa0177750:intron | 20.0% |
!! | AGTGTGAAAAAAATGTATAT+AGG | + | chr1_4:64979233-64979252 | None:intergenic | 20.0% |
!!! | TTTTTTTAAGAGTGAATGAA+TGG | - | chr1_4:64979375-64979394 | Msa0177750:CDS | 20.0% |
!!! | ATATATTTTTCTTTAAGCAG+GGG | - | chr1_4:64979415-64979434 | Msa0177750:CDS | 20.0% |
!! | TATTATATAAGCCTAAGAAT+TGG | - | chr1_4:64979925-64979944 | Msa0177750:intron | 20.0% |
!! | ATTATATAAGCCTAAGAATT+GGG | - | chr1_4:64979926-64979945 | Msa0177750:intron | 20.0% |
!! | ATAAATAAAACCCAATTCTT+AGG | + | chr1_4:64979939-64979958 | None:intergenic | 20.0% |
!! | AGCCTAATAATATCATAAAT+CGG | + | chr1_4:64980031-64980050 | None:intergenic | 20.0% |
!! | ACAAATAAACGAATAAAGTA+AGG | + | chr1_4:64980222-64980241 | None:intergenic | 20.0% |
!! | TTACTTTATTCGTTTATTTG+TGG | - | chr1_4:64980221-64980240 | Msa0177750:intron | 20.0% |
!!! | TATTGCATTTTAAGATAACT+CGG | - | chr1_4:64980507-64980526 | Msa0177750:intron | 20.0% |
!!! | TATTGCATTTTAAGATAACT+CGG | - | chr1_4:64980507-64980526 | Msa0177750:intron | 20.0% |
!!! | TGTAATATTTTTGCTACTTT+TGG | - | chr1_4:64980593-64980612 | Msa0177750:intron | 20.0% |
!!! | GTAATATTTTTGCTACTTTT+GGG | - | chr1_4:64980594-64980613 | Msa0177750:intron | 20.0% |
!! | ATAATAATTGGGTATAGTAT+AGG | + | chr1_4:64980819-64980838 | None:intergenic | 20.0% |
!!! | TAAATAAGAGAAGTACAATT+AGG | + | chr1_4:64981589-64981608 | None:intergenic | 20.0% |
!!! | TTCTTTTGTATGTCTTATTT+TGG | - | chr1_4:64981650-64981669 | Msa0177750:CDS | 20.0% |
!! | TATTAAATACCTGGAAAATA+AGG | - | chr1_4:64981851-64981870 | Msa0177750:CDS | 20.0% |
!!! | TTTGAACTTTTTCTATAATG+TGG | - | chr1_4:64982647-64982666 | Msa0177750:intron | 20.0% |
!!! | TTGAACTTTTTCTATAATGT+GGG | - | chr1_4:64982648-64982667 | Msa0177750:intron | 20.0% |
!! | AAATATTTACACATACCAAA+AGG | + | chr1_4:64983091-64983110 | None:intergenic | 20.0% |
!! | ATAAGAACATAAGTTTAGTT+TGG | + | chr1_4:64983149-64983168 | None:intergenic | 20.0% |
! | AAGTTCAATTTAAGAAGAAC+AGG | + | chr1_4:64978138-64978157 | None:intergenic | 25.0% |
! | TAATAGTCATGCAACAAATT+AGG | + | chr1_4:64978479-64978498 | None:intergenic | 25.0% |
!! | AACCTGTTTCATTTTATATG+AGG | - | chr1_4:64978539-64978558 | Msa0177750:intron | 25.0% |
! | TTCCTCATATAAAATGAAAC+AGG | + | chr1_4:64978544-64978563 | None:intergenic | 25.0% |
! | AAAAGCAACACTTATAAGTT+AGG | + | chr1_4:64978755-64978774 | None:intergenic | 25.0% |
!!! | ACTTATAAGTGTTGCTTTTT+TGG | - | chr1_4:64978756-64978775 | Msa0177750:intron | 25.0% |
!!! | CTTATAAGTGTTGCTTTTTT+GGG | - | chr1_4:64978757-64978776 | Msa0177750:intron | 25.0% |
!! | AATAATTTTGTTGAAGAAGC+TGG | - | chr1_4:64978934-64978953 | Msa0177750:intron | 25.0% |
!!! | ACTTTTTTCCCAGTATATAT+AGG | - | chr1_4:64978958-64978977 | Msa0177750:intron | 25.0% |
! | AGTTCATTGATAGAAAAGTT+CGG | - | chr1_4:64978994-64979013 | Msa0177750:intron | 25.0% |
! | GAAATAAACTAACCTTCAAA+TGG | + | chr1_4:64979159-64979178 | None:intergenic | 25.0% |
!!! | TCACAGTTATTTTACATACT+AGG | - | chr1_4:64979195-64979214 | Msa0177750:intron | 25.0% |
!! | AAGCTACTTTGATAGTTAAA+CGG | - | chr1_4:64979334-64979353 | Msa0177750:CDS | 25.0% |
!! | GGTTTTTGACATATACTTTA+AGG | + | chr1_4:64979505-64979524 | None:intergenic | 25.0% |
! | CCTAGATCAATAAAACTATA+GGG | + | chr1_4:64979577-64979596 | None:intergenic | 25.0% |
! | TCCTAGATCAATAAAACTAT+AGG | + | chr1_4:64979578-64979597 | None:intergenic | 25.0% |
!! | AAACATGGACCTTTATTTAT+AGG | - | chr1_4:64979685-64979704 | Msa0177750:intron | 25.0% |
! | TTCAGAATGCCTATAAATAA+AGG | + | chr1_4:64979697-64979716 | None:intergenic | 25.0% |
!! | TCTTTCTGTTATATTTCTGT+TGG | + | chr1_4:64979772-64979791 | None:intergenic | 25.0% |
! | GTTGTAAATAGTTAGTTAGT+TGG | + | chr1_4:64979799-64979818 | None:intergenic | 25.0% |
! | AACTAACTATTTACAACACA+AGG | - | chr1_4:64979802-64979821 | Msa0177750:intron | 25.0% |
!!! | TGCCGATTTATGATATTATT+AGG | - | chr1_4:64980026-64980045 | Msa0177750:intron | 25.0% |
! | TTTCTCTTTGACATTCTTAT+TGG | + | chr1_4:64980117-64980136 | None:intergenic | 25.0% |
!!! | AAGCTCTTTTTTTTAGTGTT+CGG | - | chr1_4:64980706-64980725 | Msa0177750:intron | 25.0% |
!!! | TCAAAAAGCAGATGATTTTT+TGG | - | chr1_4:64981230-64981249 | Msa0177750:intron | 25.0% |
! | AAAACAAAATCTCATTCCTT+TGG | - | chr1_4:64981263-64981282 | Msa0177750:intron | 25.0% |
!!! | GAAAATAGTTTTGACTATTG+TGG | - | chr1_4:64981335-64981354 | Msa0177750:intron | 25.0% |
! | CAATAACTTAACAAGTTCTT+TGG | + | chr1_4:64981382-64981401 | None:intergenic | 25.0% |
!!! | AAGAACTTGTTAAGTTATTG+AGG | - | chr1_4:64981382-64981401 | Msa0177750:intron | 25.0% |
!!! | AGAACTTGTTAAGTTATTGA+GGG | - | chr1_4:64981383-64981402 | Msa0177750:intron | 25.0% |
! | GACTTAATATTTGGTTATGT+TGG | - | chr1_4:64981426-64981445 | Msa0177750:intron | 25.0% |
! | TACTACTAAACTACCAAAAA+TGG | - | chr1_4:64981488-64981507 | Msa0177750:intron | 25.0% |
! | TAAAGAAGATGAGTATCTTT+CGG | - | chr1_4:64981521-64981540 | Msa0177750:intron | 25.0% |
!! | AGAGGGAAAAATTTGAAATT+AGG | + | chr1_4:64981616-64981635 | None:intergenic | 25.0% |
! | GAAATGTATCAGAATAAAGA+GGG | + | chr1_4:64981633-64981652 | None:intergenic | 25.0% |
! | AGAAATGTATCAGAATAAAG+AGG | + | chr1_4:64981634-64981653 | None:intergenic | 25.0% |
! | ATATACTTCTCTTTGTAACA+TGG | + | chr1_4:64982249-64982268 | None:intergenic | 25.0% |
!! | ACAAAGTTTTTGTCAAATAG+TGG | + | chr1_4:64982374-64982393 | None:intergenic | 25.0% |
!!! | ACATTAATTTTTCAGGTAGT+TGG | - | chr1_4:64982689-64982708 | Msa0177750:intron | 25.0% |
!! | CAAATCACTAAATTTCTAGA+AGG | - | chr1_4:64982746-64982765 | Msa0177750:intron | 25.0% |
! | TTAATGCTTATTCAAACCTT+AGG | - | chr1_4:64982884-64982903 | Msa0177750:intron | 25.0% |
!!! | TTAGTTATTTCTTGACATGA+AGG | - | chr1_4:64983182-64983201 | Msa0177750:five_prime_UTR | 25.0% |
! | CTTATTTATTACTTTCAACG+TGG | - | chr1_4:64983205-64983224 | Msa0177750:five_prime_UTR | 25.0% |
!! | CTTCTTCTTCTCTTTTGTTT+TGG | + | chr1_4:64977617-64977636 | None:intergenic | 30.0% |
AGGTATATCTCTACTCTTAT+GGG | - | chr1_4:64977830-64977849 | Msa0177750:CDS | 30.0% | |
TATGCATGCATCAAACATAA+TGG | - | chr1_4:64978042-64978061 | Msa0177750:CDS | 30.0% | |
!! | TCAAACATAATGGACATCTT+TGG | - | chr1_4:64978052-64978071 | Msa0177750:CDS | 30.0% |
!! | TCTACTTTTGCAATGAGTAT+AGG | + | chr1_4:64978632-64978651 | None:intergenic | 30.0% |
! | GATGTTGAGTATGTTTTCTT+TGG | - | chr1_4:64978686-64978705 | Msa0177750:intron | 30.0% |
TGATTAAACAGCAAAATGGT+TGG | + | chr1_4:64978805-64978824 | None:intergenic | 30.0% | |
!!! | ACCATTTTGCTGTTTAATCA+TGG | - | chr1_4:64978805-64978824 | Msa0177750:intron | 30.0% |
!!! | CCATTTTGCTGTTTAATCAT+GGG | - | chr1_4:64978806-64978825 | Msa0177750:intron | 30.0% |
!!! | CATTTTGCTGTTTAATCATG+GGG | - | chr1_4:64978807-64978826 | Msa0177750:intron | 30.0% |
! | TTCCCAGTATATATAGGTTT+TGG | - | chr1_4:64978964-64978983 | Msa0177750:intron | 30.0% |
! | TCCCAGTATATATAGGTTTT+GGG | - | chr1_4:64978965-64978984 | Msa0177750:intron | 30.0% |
ACCCAAAACCTATATATACT+GGG | + | chr1_4:64978969-64978988 | None:intergenic | 30.0% | |
AACCCAAAACCTATATATAC+TGG | + | chr1_4:64978970-64978989 | None:intergenic | 30.0% | |
!!! | AGTATATATAGGTTTTGGGT+TGG | - | chr1_4:64978969-64978988 | Msa0177750:intron | 30.0% |
! | AATGAGCGTAACACATTTTA+TGG | - | chr1_4:64979132-64979151 | Msa0177750:intron | 30.0% |
! | ACATTTTATGGTCCATTTGA+AGG | - | chr1_4:64979144-64979163 | Msa0177750:intron | 30.0% |
!! | GAGTTGATTTTGTCATATCT+AGG | - | chr1_4:64979256-64979275 | Msa0177750:CDS | 30.0% |
TCTAGGAAATAAATATGTGC+TGG | - | chr1_4:64979273-64979292 | Msa0177750:CDS | 30.0% | |
! | AATAAATATGTGCTGGCATA+TGG | - | chr1_4:64979280-64979299 | Msa0177750:CDS | 30.0% |
TATGTCAAAAACCAGTTGTT+AGG | - | chr1_4:64979512-64979531 | Msa0177750:CDS | 30.0% | |
!!! | CCCTATAGTTTTATTGATCT+AGG | - | chr1_4:64979574-64979593 | Msa0177750:intron | 30.0% |
AAATCCTGCACTACTTAAAT+AGG | - | chr1_4:64979715-64979734 | Msa0177750:intron | 30.0% | |
AATCCTGCACTACTTAAATA+GGG | - | chr1_4:64979716-64979735 | Msa0177750:intron | 30.0% | |
CTTAACTTCATTCCAAAGAT+GGG | - | chr1_4:64980049-64980068 | Msa0177750:intron | 30.0% | |
TTAACTTCATTCCAAAGATG+GGG | - | chr1_4:64980050-64980069 | Msa0177750:intron | 30.0% | |
TCATAAACGCTATATCTACT+AGG | - | chr1_4:64980140-64980159 | Msa0177750:intron | 30.0% | |
ATTTGTGGAACCTTATATAC+TGG | - | chr1_4:64980236-64980255 | Msa0177750:intron | 30.0% | |
TTTGTGGAACCTTATATACT+GGG | - | chr1_4:64980237-64980256 | Msa0177750:intron | 30.0% | |
! | TCTTTCTGAAAGTTTAGGTT+AGG | - | chr1_4:64980426-64980445 | Msa0177750:intron | 30.0% |
!!! | TTTTTCTTTTTGGTTTTCCC+TGG | - | chr1_4:64980457-64980476 | Msa0177750:intron | 30.0% |
! | TAGTTCACTATCCAGATTTT+AGG | - | chr1_4:64980652-64980671 | Msa0177750:intron | 30.0% |
! | CTTTTACTTCTCCTAAAATC+TGG | + | chr1_4:64980666-64980685 | None:intergenic | 30.0% |
TAGGAGAAGTAAAAGTTGTA+AGG | - | chr1_4:64980671-64980690 | Msa0177750:intron | 30.0% | |
GTAAAAGTTGTAAGGCTTTA+TGG | - | chr1_4:64980679-64980698 | Msa0177750:intron | 30.0% | |
GAACACTAAAAAAAAGAGCT+TGG | + | chr1_4:64980707-64980726 | None:intergenic | 30.0% | |
CTCTAACCTTAACATACAAT+AGG | - | chr1_4:64980893-64980912 | Msa0177750:intron | 30.0% | |
! | TTGAAAGGATTTTCTTGTCA+GGG | - | chr1_4:64980921-64980940 | Msa0177750:intron | 30.0% |
TAGGAATTGAAGTAGATTTG+AGG | - | chr1_4:64980944-64980963 | Msa0177750:intron | 30.0% | |
GCAAATCGTGACTTAATATT+TGG | - | chr1_4:64981417-64981436 | Msa0177750:intron | 30.0% | |
AACTACCAAAAATGGTCATT+TGG | - | chr1_4:64981496-64981515 | Msa0177750:intron | 30.0% | |
ACTACCAAAAATGGTCATTT+GGG | - | chr1_4:64981497-64981516 | Msa0177750:intron | 30.0% | |
! | TTATCCCAAATGACCATTTT+TGG | + | chr1_4:64981504-64981523 | None:intergenic | 30.0% |
CTTATCTATATGTCTATGCT+TGG | - | chr1_4:64981679-64981698 | Msa0177750:CDS | 30.0% | |
AACACCTTAGAAAAGTTAGA+TGG | + | chr1_4:64981755-64981774 | None:intergenic | 30.0% | |
ATACCTTGGTATTAAATACC+TGG | - | chr1_4:64981842-64981861 | Msa0177750:CDS | 30.0% | |
TTTCCAGGTATTTAATACCA+AGG | + | chr1_4:64981848-64981867 | None:intergenic | 30.0% | |
! | GCTGTTAGTAAAATTCGTTT+TGG | - | chr1_4:64981898-64981917 | Msa0177750:CDS | 30.0% |
!! | ATTCGTTTTGGTACATAACT+AGG | - | chr1_4:64981910-64981929 | Msa0177750:CDS | 30.0% |
!! | TAACTAGGAAACTCTAGAAT+AGG | - | chr1_4:64981925-64981944 | Msa0177750:CDS | 30.0% |
!!! | GAAACTCTAGAATAGGATTT+TGG | - | chr1_4:64981932-64981951 | Msa0177750:CDS | 30.0% |
! | AAACATTGGTATCTGAAGTT+CGG | - | chr1_4:64981994-64982013 | Msa0177750:intron | 30.0% |
ACCATGTAACTATCCTATAT+AGG | - | chr1_4:64982143-64982162 | Msa0177750:CDS | 30.0% | |
ACCATAAAGAACTCATTTAG+TGG | - | chr1_4:64982785-64982804 | Msa0177750:intron | 30.0% | |
CCATAAAGAACTCATTTAGT+GGG | - | chr1_4:64982786-64982805 | Msa0177750:intron | 30.0% | |
TTCTAATGTCGAAAGATCTA+TGG | + | chr1_4:64982832-64982851 | None:intergenic | 30.0% | |
TAGATCTTTCGACATTAGAA+TGG | - | chr1_4:64982832-64982851 | Msa0177750:intron | 30.0% | |
ATTCAAACCTTAGGTAGTAA+AGG | - | chr1_4:64982893-64982912 | Msa0177750:intron | 30.0% | |
! | TGATTAACCTTTTCTTGGTT+TGG | + | chr1_4:64982944-64982963 | None:intergenic | 30.0% |
! | TTGGTTGATTAACCTTTTCT+TGG | + | chr1_4:64982949-64982968 | None:intergenic | 30.0% |
! | GGAAGAAAAGAGTATAAAGA+AGG | - | chr1_4:64982989-64983008 | Msa0177750:CDS | 30.0% |
GATCATCACTTAATTATAGC+TGG | - | chr1_4:64983049-64983068 | Msa0177750:CDS | 30.0% | |
!! | TTTAGAATTACCATGCCTTT+TGG | - | chr1_4:64983073-64983092 | Msa0177750:CDS | 30.0% |
!! | AACATAAGTTTAGTTTGGAC+AGG | + | chr1_4:64983144-64983163 | None:intergenic | 30.0% |
! | ACCATTATCGATTGATGGAA+AGG | - | chr1_4:64977699-64977718 | Msa0177750:three_prime_UTR | 35.0% |
ACCTTTCCATCAATCGATAA+TGG | + | chr1_4:64977703-64977722 | None:intergenic | 35.0% | |
TAAGAGTAGAGATATACCTC+AGG | + | chr1_4:64977829-64977848 | None:intergenic | 35.0% | |
GAGGTATATCTCTACTCTTA+TGG | - | chr1_4:64977829-64977848 | Msa0177750:CDS | 35.0% | |
TGTCCATGTTGTATCAATGT+TGG | - | chr1_4:64977967-64977986 | Msa0177750:CDS | 35.0% | |
TGTCCAACATTGATACAACA+TGG | + | chr1_4:64977973-64977992 | None:intergenic | 35.0% | |
CATACTACTCTAACTCTCAA+GGG | + | chr1_4:64978026-64978045 | None:intergenic | 35.0% | |
!! | AACATAATGGACATCTTTGG+TGG | - | chr1_4:64978055-64978074 | Msa0177750:CDS | 35.0% |
TGTTTGGACAATCCTTGAAA+TGG | + | chr1_4:64978374-64978393 | None:intergenic | 35.0% | |
TTCAAGGATTGTCCAAACAA+AGG | - | chr1_4:64978375-64978394 | Msa0177750:intron | 35.0% | |
AGTCACAAGAATCTCTTATC+AGG | + | chr1_4:64978515-64978534 | None:intergenic | 35.0% | |
TTCTGTCTTACAGTTAGATG+CGG | - | chr1_4:64978577-64978596 | Msa0177750:intron | 35.0% | |
AATGAGTATAGGTTCCTTCA+AGG | + | chr1_4:64978621-64978640 | None:intergenic | 35.0% | |
AAACAGCAAAATGGTTGGAT+AGG | + | chr1_4:64978800-64978819 | None:intergenic | 35.0% | |
CCCATGATTAAACAGCAAAA+TGG | + | chr1_4:64978809-64978828 | None:intergenic | 35.0% | |
ACAAGTAAATCAGCTTTCCT+TGG | + | chr1_4:64978853-64978872 | None:intergenic | 35.0% | |
! | GAAAAATGCATGGTTTTCTG+TGG | - | chr1_4:64979029-64979048 | Msa0177750:intron | 35.0% |
!! | CTCATTGTACAGTGGATTAA+GGG | + | chr1_4:64979118-64979137 | None:intergenic | 35.0% |
GAGCTTCATACAATGGAATA+TGG | + | chr1_4:64979452-64979471 | None:intergenic | 35.0% | |
CCAAAATGAGCTTCATACAA+TGG | + | chr1_4:64979459-64979478 | None:intergenic | 35.0% | |
! | CCATTGTATGAAGCTCATTT+TGG | - | chr1_4:64979456-64979475 | Msa0177750:CDS | 35.0% |
! | AACCAGTTGTTAGGTTCTTT+TGG | - | chr1_4:64979521-64979540 | Msa0177750:CDS | 35.0% |
TTCCAAAAGAACCTAACAAC+TGG | + | chr1_4:64979526-64979545 | None:intergenic | 35.0% | |
AGGAAAAGAAAGATAGACAG+AGG | - | chr1_4:64979594-64979613 | Msa0177750:intron | 35.0% | |
!!! | GCTTTTGGTTAGTTTTTGAC+TGG | + | chr1_4:64979647-64979666 | None:intergenic | 35.0% |
!! | GTAGATGGTATCTTAGCTTT+TGG | + | chr1_4:64979662-64979681 | None:intergenic | 35.0% |
GATACCATCTACAGAAAACA+TGG | - | chr1_4:64979670-64979689 | Msa0177750:intron | 35.0% | |
! | GTTAGTTCTTATTCCTTCGA+TGG | - | chr1_4:64979828-64979847 | Msa0177750:intron | 35.0% |
! | CTTTGTTAGTTTACCATCGA+AGG | + | chr1_4:64979844-64979863 | None:intergenic | 35.0% |
CTTCGATGGTAAACTAACAA+AGG | - | chr1_4:64979842-64979861 | Msa0177750:intron | 35.0% | |
ACTTAACATGTAAGGAGAGT+AGG | + | chr1_4:64979905-64979924 | None:intergenic | 35.0% | |
GCTTAACTTCATTCCAAAGA+TGG | - | chr1_4:64980048-64980067 | Msa0177750:intron | 35.0% | |
GCAATGCACAAATCAATCTT+GGG | + | chr1_4:64980172-64980191 | None:intergenic | 35.0% | |
AGCAATGCACAAATCAATCT+TGG | + | chr1_4:64980173-64980192 | None:intergenic | 35.0% | |
! | CTGGTTCTTTCTGAAAGTTT+AGG | - | chr1_4:64980421-64980440 | Msa0177750:intron | 35.0% |
! | TCATGAGAACAAGTTTTCCA+GGG | + | chr1_4:64980477-64980496 | None:intergenic | 35.0% |
! | TTCATGAGAACAAGTTTTCC+AGG | + | chr1_4:64980478-64980497 | None:intergenic | 35.0% |
GCAGAAGAACTGTTAAACAA+GGG | - | chr1_4:64980751-64980770 | Msa0177750:intron | 35.0% | |
!! | GTTTCTTTAGGAGGTCTTTT+TGG | - | chr1_4:64980793-64980812 | Msa0177750:intron | 35.0% |
TAGAGTATGACAATGTTACC+TGG | - | chr1_4:64980852-64980871 | Msa0177750:intron | 35.0% | |
AGTCGACCTATTGTATGTTA+AGG | + | chr1_4:64980902-64980921 | None:intergenic | 35.0% | |
!! | ATACAATAGGTCGACTTGAA+AGG | - | chr1_4:64980906-64980925 | Msa0177750:intron | 35.0% |
! | CTTGAAAGGATTTTCTTGTC+AGG | - | chr1_4:64980920-64980939 | Msa0177750:intron | 35.0% |
!! | GAATGTCTTTGTTTCTGTAC+TGG | - | chr1_4:64981030-64981049 | Msa0177750:intron | 35.0% |
CTACTTGCATTATGTTATGC+TGG | - | chr1_4:64981118-64981137 | Msa0177750:intron | 35.0% | |
TTAAGTGTCTCATAGGATAC+AGG | + | chr1_4:64981294-64981313 | None:intergenic | 35.0% | |
CATCAACTTAAGTGTCTCAT+AGG | + | chr1_4:64981301-64981320 | None:intergenic | 35.0% | |
!! | CTTAAGTTGATGAAAGCTGA+TGG | - | chr1_4:64981309-64981328 | Msa0177750:intron | 35.0% |
TTATGTTGGAGTTAAACAGC+TGG | - | chr1_4:64981440-64981459 | Msa0177750:intron | 35.0% | |
! | CATGCCATCTAACTTTTCTA+AGG | - | chr1_4:64981748-64981767 | Msa0177750:CDS | 35.0% |
CGTTGCTAAATTATGCAACA+AGG | + | chr1_4:64981784-64981803 | None:intergenic | 35.0% | |
! | AGTGAGAATTTGAGATACCT+TGG | - | chr1_4:64981828-64981847 | Msa0177750:CDS | 35.0% |
CTATACCAATAGTAGTTCAC+AGG | + | chr1_4:64981879-64981898 | None:intergenic | 35.0% | |
CAAGAAATCACACATTCTCT+TGG | - | chr1_4:64981959-64981978 | Msa0177750:CDS | 35.0% | |
! | ATACCAATGTTTGGAATCCT+AGG | + | chr1_4:64981986-64982005 | None:intergenic | 35.0% |
GAACTTCAGATACCAATGTT+TGG | + | chr1_4:64981995-64982014 | None:intergenic | 35.0% | |
! | AACATTGGTATCTGAAGTTC+GGG | - | chr1_4:64981995-64982014 | Msa0177750:intron | 35.0% |
!! | ATGCAATTGATGATGATCGA+AGG | + | chr1_4:64982096-64982115 | None:intergenic | 35.0% |
AGGATAGTTACATGGTTAAC+AGG | + | chr1_4:64982139-64982158 | None:intergenic | 35.0% | |
GCCTATATAGGATAGTTACA+TGG | + | chr1_4:64982147-64982166 | None:intergenic | 35.0% | |
TCAAAGTGAAGAGCCTATAT+AGG | + | chr1_4:64982159-64982178 | None:intergenic | 35.0% | |
TATATAGGCTCTTCACTTTG+AGG | - | chr1_4:64982158-64982177 | Msa0177750:CDS | 35.0% | |
TACTTCTCTTTGTAACATGG+TGG | + | chr1_4:64982246-64982265 | None:intergenic | 35.0% | |
! | GTGTTTTCAATCACAGATAG+TGG | - | chr1_4:64982289-64982308 | Msa0177750:intron | 35.0% |
ATTTGTGTTAGCATGATAGC+AGG | + | chr1_4:64982576-64982595 | None:intergenic | 35.0% | |
! | TTTCTAGAAGGATACAGAGA+AGG | - | chr1_4:64982758-64982777 | Msa0177750:intron | 35.0% |
CCCACTAAATGAGTTCTTTA+TGG | + | chr1_4:64982789-64982808 | None:intergenic | 35.0% | |
TGGATAAATTGCATCAGTGA+TGG | + | chr1_4:64982812-64982831 | None:intergenic | 35.0% | |
ATCATCTCCTTTACTACCTA+AGG | + | chr1_4:64982903-64982922 | None:intergenic | 35.0% | |
TTAGGTAGTAAAGGAGATGA+TGG | - | chr1_4:64982902-64982921 | Msa0177750:intron | 35.0% | |
TTTACACATACCAAAAGGCA+TGG | + | chr1_4:64983086-64983105 | None:intergenic | 35.0% | |
!! | TGGCATTGATGAAATGAAAG+TGG | - | chr1_4:64983225-64983244 | Msa0177750:five_prime_UTR | 35.0% |
! | ACAAGCCTCTGTTTTGTGTT+TGG | - | chr1_4:64977589-64977608 | Msa0177750:three_prime_UTR | 40.0% |
TGGATCCAAACACAAAACAG+AGG | + | chr1_4:64977597-64977616 | None:intergenic | 40.0% | |
! | GCTGAACCATTATCGATTGA+TGG | - | chr1_4:64977694-64977713 | Msa0177750:three_prime_UTR | 40.0% |
GATGTGATCGAAGGATGAAA+TGG | + | chr1_4:64977758-64977777 | None:intergenic | 40.0% | |
TTCATCCTTCGATCACATCT+TGG | - | chr1_4:64977759-64977778 | Msa0177750:CDS | 40.0% | |
ATCAACCAAGATGTGATCGA+AGG | + | chr1_4:64977767-64977786 | None:intergenic | 40.0% | |
GCATACTACTCTAACTCTCA+AGG | + | chr1_4:64978027-64978046 | None:intergenic | 40.0% | |
! | AATGGACATCTTTGGTGGTT+TGG | - | chr1_4:64978060-64978079 | Msa0177750:intron | 40.0% |
AATTAGGATTATGCGTGTCG+CGG | + | chr1_4:64978463-64978482 | None:intergenic | 40.0% | |
! | CAACATCGTGTTTTCTTGCA+AGG | + | chr1_4:64978673-64978692 | None:intergenic | 40.0% |
AGCAGAATCTGAATCGAGAA+TGG | + | chr1_4:64978911-64978930 | None:intergenic | 40.0% | |
!! | TGTGGCAAAGGATTTTTCAG+AGG | - | chr1_4:64979047-64979066 | Msa0177750:intron | 40.0% |
!! | GGATTTTTCAGAGGATCTCA+TGG | - | chr1_4:64979056-64979075 | Msa0177750:intron | 40.0% |
!! | GCTCATTGTACAGTGGATTA+AGG | + | chr1_4:64979119-64979138 | None:intergenic | 40.0% |
TCTTTAAGCAGGGGCTTATT+AGG | - | chr1_4:64979424-64979443 | Msa0177750:CDS | 40.0% | |
CTTTAAGCAGGGGCTTATTA+GGG | - | chr1_4:64979425-64979444 | Msa0177750:CDS | 40.0% | |
!! | AGGTTCTTTTGGAAGAACAC+AGG | - | chr1_4:64979532-64979551 | Msa0177750:intron | 40.0% |
TTGGAAGAACACAGGTAGAA+AGG | - | chr1_4:64979540-64979559 | Msa0177750:intron | 40.0% | |
TGGAAGAACACAGGTAGAAA+GGG | - | chr1_4:64979541-64979560 | Msa0177750:intron | 40.0% | |
ACTGGAAAATTCCAGTGTGA+GGG | + | chr1_4:64979629-64979648 | None:intergenic | 40.0% | |
! | AGGTCCATGTTTTCTGTAGA+TGG | + | chr1_4:64979677-64979696 | None:intergenic | 40.0% |
TGTCCCTATTTAAGTAGTGC+AGG | + | chr1_4:64979722-64979741 | None:intergenic | 40.0% | |
! | TCTGTTGGCTGTTACTTGTT+AGG | + | chr1_4:64979757-64979776 | None:intergenic | 40.0% |
GGGAATGTTAATGATGTGCA+AGG | + | chr1_4:64979878-64979897 | None:intergenic | 40.0% | |
ATGTAAGGAGAGTAGGTGTT+GGG | + | chr1_4:64979898-64979917 | None:intergenic | 40.0% | |
GAGACACTTCCCAGTATATA+AGG | + | chr1_4:64980249-64980268 | None:intergenic | 40.0% | |
!!! | GGCTGCTGCTTTTTTCTTTT+TGG | - | chr1_4:64980447-64980466 | Msa0177750:intron | 40.0% |
GGCAGAAGAACTGTTAAACA+AGG | - | chr1_4:64980750-64980769 | Msa0177750:intron | 40.0% | |
TTCCAGCTCTTGGTTTCTTT+AGG | - | chr1_4:64980781-64980800 | Msa0177750:intron | 40.0% | |
! | AAGGATTTTCTTGTCAGGGT+AGG | - | chr1_4:64980925-64980944 | Msa0177750:intron | 40.0% |
CAGATAAGCTCACAACATCT+TGG | + | chr1_4:64981061-64981080 | None:intergenic | 40.0% | |
!! | AGTTGATGAAAGCTGATGGT+AGG | - | chr1_4:64981313-64981332 | Msa0177750:intron | 40.0% |
TGAGTATCTTTCGGTAAGTC+TGG | - | chr1_4:64981530-64981549 | Msa0177750:intron | 40.0% | |
!! | CTTGGTTACTTTGAGATGAG+TGG | - | chr1_4:64981697-64981716 | Msa0177750:CDS | 40.0% |
AGTTAGATGGCATGAATGTC+AGG | + | chr1_4:64981742-64981761 | None:intergenic | 40.0% | |
AATTTAGCAACGTGCGTGAA+TGG | - | chr1_4:64981792-64981811 | Msa0177750:CDS | 40.0% | |
! | ACATTGGTATCTGAAGTTCG+GGG | - | chr1_4:64981996-64982015 | Msa0177750:intron | 40.0% |
GTAACATGGTGGTCAATAGA+GGG | + | chr1_4:64982235-64982254 | None:intergenic | 40.0% | |
TGTAACATGGTGGTCAATAG+AGG | + | chr1_4:64982236-64982255 | None:intergenic | 40.0% | |
ATAACGCTACTGTAGCAAAG+TGG | + | chr1_4:64982439-64982458 | None:intergenic | 40.0% | |
!! | GTTGGTTCAGAAAGCATTGA+AGG | - | chr1_4:64982707-64982726 | Msa0177750:intron | 40.0% |
!! | TTCAGAAAGCATTGAAGGAG+AGG | - | chr1_4:64982712-64982731 | Msa0177750:intron | 40.0% |
!! | GAGAGTACCAAACCAAGAAA+AGG | - | chr1_4:64982934-64982953 | Msa0177750:intron | 40.0% |
ATGGTTCAGCACGACAAAAG+TGG | + | chr1_4:64977684-64977703 | None:intergenic | 45.0% | |
! | TGAAATGGCGGAATCGAAGT+TGG | + | chr1_4:64977743-64977762 | None:intergenic | 45.0% |
GTGATCGAAGGATGAAATGG+CGG | + | chr1_4:64977755-64977774 | None:intergenic | 45.0% | |
! | TGGTTGATTTCTACGCTCCT+TGG | - | chr1_4:64977779-64977798 | Msa0177750:CDS | 45.0% |
!! | GTCGTATGAGTGCCATTTCA+AGG | - | chr1_4:64978359-64978378 | Msa0177750:intron | 45.0% |
GACACTCATGTGACACATGT+CGG | + | chr1_4:64978435-64978454 | None:intergenic | 45.0% | |
GACATGTGTCACATGAGTGT+CGG | - | chr1_4:64978434-64978453 | Msa0177750:intron | 45.0% | |
ATTAGGATTATGCGTGTCGC+GGG | + | chr1_4:64978462-64978481 | None:intergenic | 45.0% | |
TGTCTTACAGTTAGATGCGG+CGG | - | chr1_4:64978580-64978599 | Msa0177750:intron | 45.0% | |
TTGGTCCGCGATATTCAGTT+GGG | + | chr1_4:64978834-64978853 | None:intergenic | 45.0% | |
! | TGCATGGTTTTCTGTGGCAA+AGG | - | chr1_4:64979035-64979054 | Msa0177750:intron | 45.0% |
CTTCGATAAGATTCCTGCCT+TGG | - | chr1_4:64979089-64979108 | Msa0177750:intron | 45.0% | |
!! | CAGTGGATTAAGGGAAACCA+AGG | + | chr1_4:64979109-64979128 | None:intergenic | 45.0% |
GTGTTACGCTCATTGTACAG+TGG | + | chr1_4:64979126-64979145 | None:intergenic | 45.0% | |
GACTGGAAAATTCCAGTGTG+AGG | + | chr1_4:64979630-64979649 | None:intergenic | 45.0% | |
! | TTGGCTGTTACTTGTTAGGC+TGG | + | chr1_4:64979753-64979772 | None:intergenic | 45.0% |
CATGTAAGGAGAGTAGGTGT+TGG | + | chr1_4:64979899-64979918 | None:intergenic | 45.0% | |
CTCTTCTACATGGTCCCTTT+GGG | - | chr1_4:64979969-64979988 | Msa0177750:intron | 45.0% | |
TCCAAAGATGGGGTTGACAT+TGG | - | chr1_4:64980060-64980079 | Msa0177750:intron | 45.0% | |
ACCAATGTCAACCCCATCTT+TGG | + | chr1_4:64980064-64980083 | None:intergenic | 45.0% | |
TGGTTAAACTCCCAACCACT+TGG | - | chr1_4:64980080-64980099 | Msa0177750:intron | 45.0% | |
! | AACCAGCAAGAGTGTAGTTC+AGG | + | chr1_4:64980407-64980426 | None:intergenic | 45.0% |
! | TTTGGGTTTGTCACTGTGTC+TGG | - | chr1_4:64980611-64980630 | Msa0177750:intron | 45.0% |
!! | TTCGGTGCATTTTGCTTGAC+TGG | - | chr1_4:64980724-64980743 | Msa0177750:intron | 45.0% |
! | TGCATTTTGCTTGACTGGAG+TGG | - | chr1_4:64980729-64980748 | Msa0177750:intron | 45.0% |
! | GGGTCTTTATTTCCAGCTCT+TGG | - | chr1_4:64980771-64980790 | Msa0177750:intron | 45.0% |
CTCCTAAAGAAACCAAGAGC+TGG | + | chr1_4:64980786-64980805 | None:intergenic | 45.0% | |
CAGCTCTTGGTTTCTTTAGG+AGG | - | chr1_4:64980784-64980803 | Msa0177750:intron | 45.0% | |
TTCAGCTTCAGTTACGTTCC+AGG | + | chr1_4:64980873-64980892 | None:intergenic | 45.0% | |
!! | GGTTACTTTGAGATGAGTGG+TGG | - | chr1_4:64981700-64981719 | Msa0177750:CDS | 45.0% |
!!! | TCACAGGCTCCTTATTTTCC+AGG | + | chr1_4:64981863-64981882 | None:intergenic | 45.0% |
AGGAGCCTGTGAACTACTAT+TGG | - | chr1_4:64981871-64981890 | Msa0177750:CDS | 45.0% | |
TCACACATTCTCTTGGTCCT+AGG | - | chr1_4:64981966-64981985 | Msa0177750:CDS | 45.0% | |
GGTCCTAGGATTCCAAACAT+TGG | - | chr1_4:64981980-64981999 | Msa0177750:intron | 45.0% | |
TATATCCTCGCCAATTGGTG+AGG | + | chr1_4:64982024-64982043 | None:intergenic | 45.0% | |
GCTCATATATCCTCGCCAAT+TGG | + | chr1_4:64982029-64982048 | None:intergenic | 45.0% | |
! | AGTGCTGCTATAGCTGCTAT+TGG | - | chr1_4:64982459-64982478 | Msa0177750:intron | 45.0% |
TAGCTGCTATTGGACAACAC+TGG | - | chr1_4:64982469-64982488 | Msa0177750:intron | 45.0% | |
!! | AAGCATTGAAGGAGAGGATC+AGG | - | chr1_4:64982718-64982737 | Msa0177750:intron | 45.0% |
! | AGCATTGAAGGAGAGGATCA+GGG | - | chr1_4:64982719-64982738 | Msa0177750:intron | 45.0% |
! | CTCTTTTCTTCCACCTTCTG+AGG | + | chr1_4:64982981-64983000 | None:intergenic | 45.0% |
GATTTCTACGCTCCTTGGTG+TGG | - | chr1_4:64977784-64977803 | Msa0177750:CDS | 50.0% | |
TTAGGATTATGCGTGTCGCG+GGG | + | chr1_4:64978461-64978480 | None:intergenic | 50.0% | |
TCCTTCAAGGCTGCAAGTAC+AGG | + | chr1_4:64978608-64978627 | None:intergenic | 50.0% | |
CTTGGTCCGCGATATTCAGT+TGG | + | chr1_4:64978835-64978854 | None:intergenic | 50.0% | |
CAACTGAATATCGCGGACCA+AGG | - | chr1_4:64978833-64978852 | Msa0177750:intron | 50.0% | |
GGATTAAGGGAAACCAAGGC+AGG | + | chr1_4:64979105-64979124 | None:intergenic | 50.0% | |
AAGGGACCATGTAGAAGAGG+CGG | + | chr1_4:64979968-64979987 | None:intergenic | 50.0% | |
CCAAAGGGACCATGTAGAAG+AGG | + | chr1_4:64979971-64979990 | None:intergenic | 50.0% | |
CCTCTTCTACATGGTCCCTT+TGG | - | chr1_4:64979968-64979987 | Msa0177750:intron | 50.0% | |
TTCTACATGGTCCCTTTGGG+CGG | - | chr1_4:64979972-64979991 | Msa0177750:intron | 50.0% | |
TATGCTTGAAGCCGCCCAAA+GGG | + | chr1_4:64979986-64980005 | None:intergenic | 50.0% | |
AGGCCTACAGTCTTGCTTGT+GGG | + | chr1_4:64980362-64980381 | None:intergenic | 50.0% | |
! | TACCAGCAAAAGCGTAGTGC+AGG | + | chr1_4:64980382-64980401 | None:intergenic | 50.0% |
! | TGCACTACGCTTTTGCTGGT+AGG | - | chr1_4:64980381-64980400 | Msa0177750:intron | 50.0% |
TAGGATACAGGCACAGCCAA+AGG | + | chr1_4:64981282-64981301 | None:intergenic | 50.0% | |
!! | TGCGTGAATGGTGTCATGAG+TGG | - | chr1_4:64981804-64981823 | Msa0177750:CDS | 50.0% |
CGTGTCCAACACGTGTGTGT+CGG | + | chr1_4:64977996-64978015 | None:intergenic | 55.0% | |
CGACACACACGTGTTGGACA+CGG | - | chr1_4:64977994-64978013 | Msa0177750:CDS | 55.0% | |
GACACACACGTGTTGGACAC+GGG | - | chr1_4:64977995-64978014 | Msa0177750:CDS | 55.0% | |
GCCTGTACTTGCAGCCTTGA+AGG | - | chr1_4:64978604-64978623 | Msa0177750:intron | 55.0% | |
GGGGTCCCAACTGAATATCG+CGG | - | chr1_4:64978826-64978845 | Msa0177750:intron | 55.0% | |
GGAAGCTACTTCCCTCACAC+TGG | - | chr1_4:64979615-64979634 | Msa0177750:intron | 55.0% | |
CTATGCTTGAAGCCGCCCAA+AGG | + | chr1_4:64979987-64980006 | None:intergenic | 55.0% | |
TCCCAACCACTTGGTCGAAG+AGG | - | chr1_4:64980089-64980108 | Msa0177750:intron | 55.0% | |
GCCTCTTCGACCAAGTGGTT+GGG | + | chr1_4:64980093-64980112 | None:intergenic | 55.0% | |
ACCCCCACAAGCAAGACTGT+AGG | - | chr1_4:64980356-64980375 | Msa0177750:intron | 55.0% | |
GCCTACAGTCTTGCTTGTGG+GGG | + | chr1_4:64980360-64980379 | None:intergenic | 55.0% | |
GGCCTACAGTCTTGCTTGTG+GGG | + | chr1_4:64980361-64980380 | None:intergenic | 55.0% | |
CAGGCCTACAGTCTTGCTTG+TGG | + | chr1_4:64980363-64980382 | None:intergenic | 55.0% | |
GGCCTGAACTACACTCTTGC+TGG | - | chr1_4:64980402-64980421 | Msa0177750:intron | 55.0% | |
!! | CCTTCTGAGGTAGAGCTGCT+TGG | + | chr1_4:64982968-64982987 | None:intergenic | 55.0% |
CCAAGCAGCTCTACCTCAGA+AGG | - | chr1_4:64982965-64982984 | Msa0177750:CDS | 55.0% | |
AGCAGCTCTACCTCAGAAGG+TGG | - | chr1_4:64982968-64982987 | Msa0177750:CDS | 55.0% | |
CGCTTGCAGTGACCACACCA+AGG | + | chr1_4:64977799-64977818 | None:intergenic | 60.0% | |
CTGCAAGCGTCTCTCTCCTG+AGG | - | chr1_4:64977810-64977829 | Msa0177750:CDS | 60.0% | |
GGACACCGACACACACGTGT+TGG | - | chr1_4:64977988-64978007 | Msa0177750:CDS | 60.0% | |
CCATGTAGAAGAGGCGGTGC+TGG | + | chr1_4:64979962-64979981 | None:intergenic | 60.0% | |
CCAGCACCGCCTCTTCTACA+TGG | - | chr1_4:64979959-64979978 | Msa0177750:intron | 60.0% | |
CGCCTCTTCGACCAAGTGGT+TGG | + | chr1_4:64980094-64980113 | None:intergenic | 60.0% | |
TTGGCGCCTCTTCGACCAAG+TGG | + | chr1_4:64980098-64980117 | None:intergenic | 60.0% | |
! | GGCCTGCACTACGCTTTTGC+TGG | - | chr1_4:64980377-64980396 | Msa0177750:intron | 60.0% |
! | GTTCGGGGCACCTCACCAAT+TGG | - | chr1_4:64982011-64982030 | Msa0177750:intron | 60.0% |
GGGCACCTCACCAATTGGCG+AGG | - | chr1_4:64982016-64982035 | Msa0177750:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 64977520 | 64983262 | 64977520 | ID=Msa0177750;Name=Msa0177750 |
chr1_4 | mRNA | 64977520 | 64983262 | 64977520 | ID=Msa0177750-mRNA-1;Parent=Msa0177750;Name=Msa0177750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=120|1|1|1|1|1|5|235|430 |
chr1_4 | exon | 64977520 | 64978078 | 64977520 | ID=Msa0177750-mRNA-1:exon:21097;Parent=Msa0177750-mRNA-1 |
chr1_4 | exon | 64979240 | 64979541 | 64979240 | ID=Msa0177750-mRNA-1:exon:21096;Parent=Msa0177750-mRNA-1 |
chr1_4 | exon | 64981617 | 64981987 | 64981617 | ID=Msa0177750-mRNA-1:exon:21095;Parent=Msa0177750-mRNA-1 |
chr1_4 | exon | 64982089 | 64982192 | 64982089 | ID=Msa0177750-mRNA-1:exon:21094;Parent=Msa0177750-mRNA-1 |
chr1_4 | exon | 64982951 | 64983262 | 64982951 | ID=Msa0177750-mRNA-1:exon:21093;Parent=Msa0177750-mRNA-1 |
chr1_4 | five_prime_UTR | 64983143 | 64983262 | 64983143 | ID=Msa0177750-mRNA-1:five_prime_utr;Parent=Msa0177750-mRNA-1 |
chr1_4 | CDS | 64982951 | 64983142 | 64982951 | ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1 |
chr1_4 | CDS | 64982089 | 64982192 | 64982089 | ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1 |
chr1_4 | CDS | 64981617 | 64981987 | 64981617 | ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1 |
chr1_4 | CDS | 64979240 | 64979541 | 64979240 | ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1 |
chr1_4 | CDS | 64977755 | 64978078 | 64977755 | ID=Msa0177750-mRNA-1:cds;Parent=Msa0177750-mRNA-1 |
chr1_4 | three_prime_UTR | 64977520 | 64977754 | 64977520 | ID=Msa0177750-mRNA-1:three_prime_utr;Parent=Msa0177750-mRNA-1 |
Gene Sequence |
Protein sequence |