AlfalfaGEDB | Msa0034270

M. sativa cultivar zhongmu-4 / Msa0034270

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0034270	sp\|Q8VZQ2\|MYB61_ARATH	86.290	124	17	0	4	127	10	133	3.68e-75	237

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0034270	A0A072VMV6	97.288	295	8	0	4	298	10	304	0.0	599

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0034270	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0034270	0.811775	5.914576e-51	-8.615850e-47
Msa0004640	Msa0034270	0.803532	3.332895e-49	-8.615850e-47
Msa0008670	Msa0034270	0.805147	1.536158e-49	-8.615850e-47
Msa0010890	Msa0034270	0.822467	2.332529e-53	-8.615850e-47
Msa0012080	Msa0034270	0.817390	3.381357e-52	-8.615850e-47
Msa0012530	Msa0034270	0.805112	1.562514e-49	-8.615850e-47
Msa0017510	Msa0034270	0.870018	2.002891e-66	-8.615850e-47
Msa0021500	Msa0034270	0.807994	3.851367e-50	-8.615850e-47
Msa0028420	Msa0034270	0.843019	1.811712e-58	-8.615850e-47
Msa0028640	Msa0034270	0.827095	1.890566e-54	-8.615850e-47

Showing 1 to 10 of 424 entries

Previous1 2 3 4 5…43Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0034270	MtrunA17_Chr1g0193801	97.288	295	8	0	4	298	10	304	0.0	599
Msa0034270	MtrunA17_Chr7g0270891	65.979	291	69	9	4	283	10	281	8.61e-123	355
Msa0034270	MtrunA17_Chr1g0193371	74.713	174	39	3	4	174	10	181	3.48e-84	257
Msa0034270	MtrunA17_Chr4g0058631	83.607	122	20	0	4	125	10	131	5.56e-75	233
Msa0034270	MtrunA17_Chr3g0117091	71.127	142	38	1	4	145	10	148	5.14e-69	218
Msa0034270	MtrunA17_Chr1g0211161	78.333	120	26	0	4	123	11	130	1.31e-68	213
Msa0034270	MtrunA17_Chr7g0271241	82.308	130	23	0	4	133	10	139	1.95e-68	217
Msa0034270	MtrunA17_Chr8g0342521	74.561	114	29	0	4	117	10	123	4.69e-61	197
Msa0034270	MtrunA17_Chr2g0309911	68.595	121	38	0	4	124	9	129	8.67e-61	196
Msa0034270	MtrunA17_Chr8g0342541	73.684	114	30	0	4	117	10	123	2.25e-60	196

Showing 1 to 10 of 165 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0034270	AT4G01680.3	83.217	143	23	1	4	146	10	151	8.46e-84	252
Msa0034270	AT4G01680.1	83.217	143	23	1	4	146	10	151	5.27e-83	254
Msa0034270	AT1G57560.1	49.286	280	130	6	4	272	10	288	3.07e-81	248
Msa0034270	AT4G01680.2	76.774	155	23	2	4	146	10	163	1.69e-79	245
Msa0034270	AT1G57560.2	87.097	124	16	0	4	127	10	133	1.02e-77	238
Msa0034270	AT1G09540.1	86.290	124	17	0	4	127	10	133	3.74e-76	237
Msa0034270	AT5G26660.1	85.833	120	17	0	4	123	10	129	5.48e-75	234
Msa0034270	AT3G12720.1	71.552	116	33	0	5	120	21	136	1.16e-62	201
Msa0034270	AT3G13890.2	75.701	107	26	0	4	110	10	116	2.82e-59	193
Msa0034270	AT3G61250.1	70.339	118	35	0	6	123	12	129	4.38e-59	191

Showing 1 to 10 of 214 entries

Previous1 2 3 4 5…22Next

Find 69 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTAGGAAGAAACA+TGG	0.684494	1_1:-62210294	None:intergenic
AAAAGCATATGCAATGGAAA+TGG	0.406668	1_1:+62210055	Msa0034270:CDS
AAAATAGCTCCAAAACTATC+TGG	0.372468	1_1:-62210547	None:intergenic
AAAATTTCCCATCAAATCTG+AGG	0.537811	1_1:-62210123	None:intergenic
AAAGATGTGGTAAGAGCTGC+AGG	0.517924	1_1:+62209492	Msa0034270:CDS
AAATTGCGGCGCAATTGCCG+GGG	0.649843	1_1:+62209781	Msa0034270:CDS
AAATTTCCCATCAAATCTGA+GGG	0.588053	1_1:-62210122	None:intergenic
AACCATTGGTTCAACCAAAC+TGG	0.373334	1_1:+62210212	Msa0034270:CDS
AACTTTGTACCAGATAGTTT+TGG	0.328603	1_1:+62210538	Msa0034270:three_prime_UTR
AAGAAGAGACTGAGACAAAA+AGG	0.366324	1_1:+62209846	Msa0034270:CDS

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTAGTGATAGAGAGAATTGA+AGG	-	chr1_1:62209188-62209207	None:intergenic	30.0%
TGAGAAGAAAAATGAAGCAA+TGG	-	chr1_1:62209212-62209231	None:intergenic	30.0%
CTCATAGGAAAATTCACAAA+TGG	+	chr1_1:62209228-62209247	Msa0034270:intron	30.0%
TAGGAAAATTCACAAATGGA+AGG	+	chr1_1:62209232-62209251	Msa0034270:intron	30.0%
AAGAAGATGAAAAACTACTG+AGG	+	chr1_1:62209304-62209323	Msa0034270:CDS	30.0%
CATATAACAAAGTATGGTCA+TGG	+	chr1_1:62209327-62209346	Msa0034270:CDS	30.0%
TTATTCTCAATCTCAGACAA+TGG	-	chr1_1:62209894-62209913	None:intergenic	30.0%
TTGAACTCTCTGATTTCAAA+AGG	-	chr1_1:62209983-62210002	None:intergenic	30.0%
AAATTTCCCATCAAATCTGA+GGG	-	chr1_1:62210125-62210144	None:intergenic	30.0%
AAAATTTCCCATCAAATCTG+AGG	-	chr1_1:62210126-62210145	None:intergenic	30.0%

Showing 1 to 10 of 218 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	62209116	62210940	62209116	ID=Msa0034270;Name=Msa0034270
chr1_1	mRNA	62209116	62210940	62209116	ID=Msa0034270-mRNA-1;Parent=Msa0034270;Name=Msa0034270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.66\|0.5\|1\|1\|1\|4\|510\|300
chr1_1	exon	62209116	62209127	62209116	ID=Msa0034270-mRNA-1:exon:19599;Parent=Msa0034270-mRNA-1
chr1_1	exon	62209276	62209378	62209276	ID=Msa0034270-mRNA-1:exon:19600;Parent=Msa0034270-mRNA-1
chr1_1	exon	62209486	62209615	62209486	ID=Msa0034270-mRNA-1:exon:19601;Parent=Msa0034270-mRNA-1
chr1_1	exon	62209773	62210940	62209773	ID=Msa0034270-mRNA-1:exon:19602;Parent=Msa0034270-mRNA-1
chr1_1	CDS	62209116	62209127	62209116	ID=Msa0034270-mRNA-1:cds;Parent=Msa0034270-mRNA-1
chr1_1	CDS	62209276	62209378	62209276	ID=Msa0034270-mRNA-1:cds;Parent=Msa0034270-mRNA-1
chr1_1	CDS	62209486	62209615	62209486	ID=Msa0034270-mRNA-1:cds;Parent=Msa0034270-mRNA-1
chr1_1	CDS	62209773	62210430	62209773	ID=Msa0034270-mRNA-1:cds;Parent=Msa0034270-mRNA-1
chr1_1	three_prime_UTR	62210431	62210940	62210431	ID=Msa0034270-mRNA-1:three_prime_utr;Parent=Msa0034270-mRNA-1

Gene Sequence

>Msa0034270

ATGAGACATAAGAAGCTTAGGAAAGGTCTATGGTCACCAGAAGAAGATGAAAAACTACTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTCTCACAAGAGGAAGAAAATCTCATTGTTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGGACAGACAATGAAATAAAGAATTTATGGAACTCTTGTTTGAAGAAGAGACTGAGACAAAAAGGTATAGATCCTGTGACTCATAAACCATTGTCTGAGATTGAGAATAATGGAGAGGAAAATGGTAATAAGAGTCAAGAGAAAGCACCAGAGATATTATTATCCAATGAATTGAACCTTTTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTAGCTATGAGCAGAGAACAACATCTTCAATTTCACCAAAAGCATATGCAATGGAAATGGAAGGTTCTTGCAACAAAGAGTTTTTCATAGATAGGTTCATTCAACCCTCAGATTTGATGGGAAATTTTCCACTTCAAATGAGTTATACAAACACTGAAAATGATTGTTTACCAAATGATTCAAACACTAGTAGTAACCATTGGTTCAACCAAACTGGAAAATCTTTTGATATGAATACTGATCAGTTTCATTTCAATCCCACAACAACATCAACAACCATGTTTCTTCCTAATTCTTTTTGCTGCAACAATTCTCTTGATATTCCCTCTGACAATGTTTCCACAGAGATGAGAACTAGCAGCAGCAACACCTTAAACTTACATAACAACAATTTTTCTTCTTGGGAGGATTAA

Protein sequence

>Msa0034270

MRHKKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQKGIDPVTHKPLSEIENNGEENGNKSQEKAPEILLSNELNLLKSESSKSDAASSYEQRTTSSISPKAYAMEMEGSCNKEFFIDRFIQPSDLMGNFPLQMSYTNTENDCLPNDSNTSSNHWFNQTGKSFDMNTDQFHFNPTTTSTTMFLPNSFCCNNSLDIPSDNVSTEMRTSSSNTLNLHNNNFSSWED*