AlfalfaGEDB | Msa0199030

M. sativa cultivar zhongmu-4 / Msa0199030

KEGG: K12823
GO: GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199030	XP_003594626.2	92.800	625	10	1	1	590	551	1175	0.0	1146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199030	sp\|Q9SQV1\|RH40_ARATH	72.981	359	54	4	1	319	491	846	1.76e-170	516

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199030	G7IKZ2	92.800	625	10	1	1	590	551	1175	0.0	1146

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029630	Msa0199030	0.816394	5.657259e-52	-8.615850e-47
Msa0079920	Msa0199030	0.832722	8.039029e-56	-8.615850e-47
Msa0125450	Msa0199030	0.806676	7.327948e-50	-8.615850e-47
Msa0125540	Msa0199030	0.805100	1.570987e-49	-8.615850e-47
Msa0126790	Msa0199030	0.833048	6.671234e-56	-8.615850e-47
Msa0171870	Msa0199030	0.822350	2.483183e-53	-8.615850e-47
Msa0199030	Msa0207030	0.804073	2.573795e-49	-8.615850e-47
Msa0199030	Msa0215990	0.800088	1.698338e-48	-8.615850e-47
Msa0199030	Msa0241950	0.804455	2.142140e-49	-8.615850e-47
Msa0199030	Msa0244970	0.827613	1.420189e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199030	MtrunA17_Chr2g0293631	92.800	625	10	1	1	590	551	1175	0.0	1146
Msa0199030	MtrunA17_Chr6g0449911	65.217	368	73	3	1	333	220	567	4.38e-162	480
Msa0199030	MtrunA17_Chr2g0330401	52.548	314	112	3	16	293	167	479	1.87e-103	322
Msa0199030	MtrunA17_Chr1g0176041	43.440	343	143	9	18	316	232	567	1.62e-76	254
Msa0199030	MtrunA17_Chr3g0121351	44.892	323	132	7	18	296	224	544	2.14e-76	254
Msa0199030	MtrunA17_Chr4g0063551	44.479	317	135	6	18	293	224	540	3.10e-73	247
Msa0199030	MtrunA17_Chr7g0270131	41.337	329	152	5	1	290	287	613	3.38e-72	246
Msa0199030	MtrunA17_Chr5g0409981	42.810	306	134	5	17	283	177	480	3.03e-70	235
Msa0199030	MtrunA17_Chr4g0058591	51.464	239	79	3	16	218	273	510	1.88e-69	233
Msa0199030	MtrunA17_Chr2g0277821	39.296	341	163	5	16	317	575	910	3.23e-69	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199030	AT3G06480.1	72.981	359	54	4	1	319	491	846	1.79e-171	516
Msa0199030	AT5G14610.6	68.235	340	66	2	1	305	217	549	1.84e-160	473
Msa0199030	AT5G14610.2	68.235	340	66	2	1	305	217	549	1.88e-160	473
Msa0199030	AT5G14610.7	68.235	340	66	2	1	305	86	418	2.02e-160	469
Msa0199030	AT5G14610.3	68.235	340	66	2	1	305	86	418	2.02e-160	469
Msa0199030	AT5G14610.5	68.235	340	66	2	1	305	225	557	5.25e-160	473
Msa0199030	AT5G14610.1	68.235	340	66	2	1	305	285	617	7.99e-159	471
Msa0199030	AT3G01540.4	67.941	340	67	2	1	305	214	546	3.20e-157	464
Msa0199030	AT3G01540.2	67.941	340	67	2	1	305	214	546	3.20e-157	464
Msa0199030	AT3G01540.3	67.941	340	67	2	1	305	214	546	3.20e-157	464

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Find 444 sgRNAs with CRISPR-Local

Find 707 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTACCTGCGGATTTC+TGG	0.133205	2_1:-17863337	None:intergenic
AAAAGTTCGGCCAATACTAC+GGG	0.506363	2_1:-17867340	None:intergenic
AAACATCTTTGCAGGATATG+AGG	0.437015	2_1:+17864071	Msa0199030:intron
AAAGGTACCTGCGGATTTCT+GGG	0.411371	2_1:-17863336	None:intergenic
AAAGTGCACTTTGGCAGTGG+TGG	0.592245	2_1:+17868809	Msa0199030:three_prime_UTR
AAATTGGAGACTTCCCAGTC+CGG	0.548548	2_1:-17867425	None:intergenic
AAATTTCAGCGTATGAGACC+TGG	0.478365	2_1:+17864929	Msa0199030:five_prime_UTR
AACAAAACATGATTTCGCCT+AGG	0.622921	2_1:+17862746	Msa0199030:five_prime_UTR
AACACTAGGCTACTTAATGC+CGG	0.557005	2_1:+17865283	Msa0199030:exon
AACAGAATTCCCTTGGGTGT+TGG	0.487364	2_1:-17868657	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGGCAAAATAAAATCCAA+GGG	+	chr2_1:17861603-17861622	Msa0199030:five_prime_UTR	30.0%
ATCATAATTTCCCAATCCAA+CGG	+	chr2_1:17861690-17861709	Msa0199030:five_prime_UTR	30.0%
AAGAATAGTAGTAGAAGAAG+GGG	-	chr2_1:17861744-17861763	None:intergenic	30.0%
GAAGAATAGTAGTAGAAGAA+GGG	-	chr2_1:17861745-17861764	None:intergenic	30.0%
TGAAGAATAGTAGTAGAAGA+AGG	-	chr2_1:17861746-17861765	None:intergenic	30.0%
TATTAATCTGGGTTAAGATC+AGG	+	chr2_1:17862027-17862046	Msa0199030:intron	30.0%
TTTGAATATGACAACAACAG+AGG	+	chr2_1:17862108-17862127	Msa0199030:five_prime_UTR	30.0%
TTACTCAATATGAAAAGCCT+GGG	+	chr2_1:17862239-17862258	Msa0199030:five_prime_UTR	30.0%
TCCTCAGAATATGCATTATA+TGG	+	chr2_1:17862717-17862736	Msa0199030:five_prime_UTR	30.0%
CCTCAGAATATGCATTATAT+GGG	+	chr2_1:17862718-17862737	Msa0199030:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	17861587	17869197	17861587	ID=Msa0199030;Name=Msa0199030
chr2_1	mRNA	17861587	17869197	17861587	ID=Msa0199030-mRNA-1;Parent=Msa0199030;Name=Msa0199030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=2249\|0.87\|0.88\|1\|0.62\|0.66\|9\|413\|590
chr2_1	exon	17861587	17861897	17861587	ID=Msa0199030-mRNA-1:exon:7546;Parent=Msa0199030-mRNA-1
chr2_1	exon	17862082	17863350	17862082	ID=Msa0199030-mRNA-1:exon:7547;Parent=Msa0199030-mRNA-1
chr2_1	exon	17864085	17864306	17864085	ID=Msa0199030-mRNA-1:exon:7548;Parent=Msa0199030-mRNA-1
chr2_1	exon	17864568	17864636	17864568	ID=Msa0199030-mRNA-1:exon:7549;Parent=Msa0199030-mRNA-1
chr2_1	exon	17864765	17865019	17864765	ID=Msa0199030-mRNA-1:exon:7550;Parent=Msa0199030-mRNA-1
chr2_1	exon	17865176	17865445	17865176	ID=Msa0199030-mRNA-1:exon:7551;Parent=Msa0199030-mRNA-1
chr2_1	exon	17865549	17865899	17865549	ID=Msa0199030-mRNA-1:exon:7552;Parent=Msa0199030-mRNA-1
chr2_1	exon	17867324	17867496	17867324	ID=Msa0199030-mRNA-1:exon:7553;Parent=Msa0199030-mRNA-1
chr2_1	exon	17867683	17869197	17867683	ID=Msa0199030-mRNA-1:exon:7554;Parent=Msa0199030-mRNA-1
chr2_1	five_prime_UTR	17861587	17861897	17861587	ID=Msa0199030-mRNA-1:five_prime_utr;Parent=Msa0199030-mRNA-1
chr2_1	five_prime_UTR	17862082	17863350	17862082	ID=Msa0199030-mRNA-1:five_prime_utr;Parent=Msa0199030-mRNA-1
chr2_1	five_prime_UTR	17864085	17864306	17864085	ID=Msa0199030-mRNA-1:five_prime_utr;Parent=Msa0199030-mRNA-1
chr2_1	five_prime_UTR	17864568	17864636	17864568	ID=Msa0199030-mRNA-1:five_prime_utr;Parent=Msa0199030-mRNA-1
chr2_1	five_prime_UTR	17864765	17865019	17864765	ID=Msa0199030-mRNA-1:five_prime_utr;Parent=Msa0199030-mRNA-1
chr2_1	five_prime_UTR	17865176	17865298	17865176	ID=Msa0199030-mRNA-1:five_prime_utr;Parent=Msa0199030-mRNA-1
chr2_1	CDS	17865299	17865445	17865299	ID=Msa0199030-mRNA-1:cds;Parent=Msa0199030-mRNA-1
chr2_1	CDS	17865549	17865899	17865549	ID=Msa0199030-mRNA-1:cds;Parent=Msa0199030-mRNA-1
chr2_1	CDS	17867324	17867496	17867324	ID=Msa0199030-mRNA-1:cds;Parent=Msa0199030-mRNA-1
chr2_1	CDS	17867683	17868784	17867683	ID=Msa0199030-mRNA-1:cds;Parent=Msa0199030-mRNA-1
chr2_1	three_prime_UTR	17868785	17869197	17868785	ID=Msa0199030-mRNA-1:three_prime_utr;Parent=Msa0199030-mRNA-1

Gene Sequence

>Msa0199030

ATGCCGGCCTTCATTCTTCTTAGGCAGCGACGCAATAATTCTCTGAATGGCCCCACCGTTTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGGGCAGACATTGTTGTTGCCACACCTGGCAGGCTCAATGATATACTTGAAATGAAAAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGGATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTATACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCAGGCGATCTTCTTGTAAATCCTGTTCAAGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACACAGTTATGTGATCAGCTTTCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGCGATAAGTCTCAAGGTGAGAGAGACTATGTTTTAGGTCAATTCCGGACTGGGAAGTCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAGGACATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAATGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTAATCAAAGTGTTGGAGGGTGCTAACCAGCACGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGAGGCGGGATGAATCGGTTTGACTCTGGCGGTGGTGGTGGCGTCGGTGGGCGCTGGGAGACTGGTGGTCGTGGCGGCATGAGGGACAGTGGTTTTGGTGGTCGTGGTGGCATGAGGGACAGTGGTGGTATGAGGGATGGTGGTGGTTTTGGTGGTCGTGGCGGTATGAGGGATGGTGGTGGCTTTGGTGGTCGCGGGGGCATGAGGGATGGTGGCTTTGGTGGTCGCGGTGGAATGAGGGATGGAGGTGGTGGAAGTGGAGGGAGGGGTGATTTCTTTCCTGGCAGGGGCAACAGAGGTAGAGGATTTGATGCTCCACGTGGGGGCAATGTTGGTTGGGGTAGGGGTGACCGTGGTGGTCCAGGTGATAGGTATAATATGGATGGTCGTGGACAAGGGCGTGGACGTGGACGATTTGACAACAGAAGAGATGTTCAGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGATAGAGTTCGAACATGGGATATCAACAGAAGCAGCAGCAGAAGTAGAAGTAGAAGTAGGAGTAGGAGCTGGAGCAGGGGTCGCAGTAGAAGTCGCAGCTGGTCTCGTGGTTGCAGCTATAGCCGTAGTCGTAGTCCACGCAGTCGTAGCCGTGGTCGCAGTTATAGCCGAAGCCGCAGCCCCAAGAAAACTAGGCGTGTTAAGTCGAAATTTTCTGATACGAATGATGTCGTGCCACCTGAAGCAGGAGCTTCCGATCCTCAAATGTTCCCTATACCTTCCAACACCCAAGGGAATTCTGTTACGGGAACTGAACATGTGGAACAGCTACCTGTTGTTGGGGGTACAGGCCCAACTAACCCAGAGGCTGTGGTGGATGTTAGTCATCAACCAGCTTCTGATATTTGA

Protein sequence

>Msa0199030

MPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQLCDQLSRSIGRTFGAAAIHGDKSQGERDYVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGMAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMNRFDSGGGGGVGGRWETGGRGGMRDSGFGGRGGMRDSGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGFGGRGGMRDGGGGSGGRGDFFPGRGNRGRGFDAPRGGNVGWGRGDRGGPGDRYNMDGRGQGRGRGRFDNRRDVQRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSWSRGRSRSRSWSRGCSYSRSRSPRSRSRGRSYSRSRSPKKTRRVKSKFSDTNDVVPPEAGASDPQMFPIPSNTQGNSVTGTEHVEQLPVVGGTGPTNPEAVVDVSHQPASDI*