AlfalfaGEDB | Msa0985220

M. sativa cultivar zhongmu-4 / Msa0985220

KEGG: -
GO: GO:0003674 GO:0005085 GO:0005086 GO:0005088 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0008150 GO:0008289 GO:0012505 GO:0016020 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0031267 GO:0035091 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0070300 GO:0098772
PFAM: PF16457.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985220	XP_013451790.1	98.125	1120	19	2	1	1120	1	1118	0.0	2262

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985220	sp\|Q947D2\|PRAF1_ARATH	68.873	1118	313	14	1	1109	1	1092	0.0	1471

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985220	A0A072U9R1	98.125	1120	19	2	1	1120	1	1118	0.0	2262

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0985220	0.807978	3.880893e-50	-8.615850e-47
Msa0000910	Msa0985220	0.877538	5.799753e-69	-8.615850e-47
Msa0002560	Msa0985220	0.871863	4.941685e-67	-8.615850e-47
Msa0003220	Msa0985220	0.855009	8.409943e-62	-8.615850e-47
Msa0003270	Msa0985220	0.822136	2.784123e-53	-8.615850e-47
Msa0003630	Msa0985220	0.801138	1.037258e-48	-8.615850e-47
Msa0008220	Msa0985220	0.802244	6.151102e-49	-8.615850e-47
Msa0010770	Msa0985220	0.818870	1.564142e-52	-8.615850e-47
Msa0010910	Msa0985220	0.833263	5.896442e-56	-8.615850e-47
Msa0012710	Msa0985220	0.845325	4.356740e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985220	MtrunA17_Chr6g0463421	98.125	1120	19	2	1	1120	1	1118	0.0	2262
Msa0985220	MtrunA17_Chr1g0202151	78.788	1122	229	7	1	1116	1	1119	0.0	1783
Msa0985220	MtrunA17_Chr7g0244411	50.356	1124	465	22	1	1100	1	1055	0.0	1040
Msa0985220	MtrunA17_Chr3g0094741	50.304	1151	453	20	5	1103	19	1102	0.0	1027
Msa0985220	MtrunA17_Chr5g0442001	50.824	1153	447	20	2	1103	8	1091	0.0	1025
Msa0985220	MtrunA17_Chr1g0167471	56.089	854	315	16	15	846	23	838	0.0	908
Msa0985220	MtrunA17_Chr8g0362061	49.097	941	413	18	4	913	1	906	0.0	845
Msa0985220	MtrunA17_Chr8g0362061	46.835	79	42	0	1018	1096	930	1008	1.81e-15	81.6
Msa0985220	MtrunA17_Chr4g0013271	52.908	705	304	8	203	901	1	683	0.0	726
Msa0985220	MtrunA17_Chr3g0109811	37.862	1001	502	17	12	956	15	951	0.0	636

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985220	AT5G42140.2	68.028	1126	304	13	1	1120	1	1076	0.0	1511
Msa0985220	AT5G42140.1	68.028	1126	304	13	1	1120	1	1076	0.0	1511
Msa0985220	AT1G76950.1	68.873	1118	313	14	1	1109	1	1092	0.0	1471
Msa0985220	AT4G14368.4	49.820	1110	446	20	1	1095	6	1019	0.0	1022
Msa0985220	AT4G14368.2	49.910	1110	443	20	1	1095	6	1017	0.0	1021
Msa0985220	AT4G14368.3	49.730	1110	445	20	1	1095	1	1012	0.0	1020
Msa0985220	AT3G23270.2	52.722	992	376	18	1	961	1	930	0.0	1000
Msa0985220	AT3G23270.2	45.588	68	36	1	1028	1094	944	1011	3.58e-12	71.6
Msa0985220	AT4G14368.1	50.000	1074	427	19	12	1070	16	994	0.0	989
Msa0985220	AT3G23270.1	52.117	992	373	20	1	961	1	921	0.0	974

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Find 341 sgRNAs with CRISPR-Local

Find 643 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACATTTGATTCCAG+TGG	0.569784	6_4:-31268119	None:intergenic
AAAATACAACGTTCGTAGCG+TGG	0.552887	6_4:+31271636	Msa0985220:CDS
AAAATTGATGGATGGAGTGA+TGG	0.562257	6_4:+31267579	Msa0985220:CDS
AAACTGATATCCTCAGGTCA+AGG	0.624160	6_4:+31267546	Msa0985220:CDS
AAAGGTTAAATAAGTAGGGG+TGG	0.606954	6_4:-31272072	None:intergenic
AAAGGTTCAAATGGGAGATT+AGG	0.429083	6_4:+31269040	Msa0985220:CDS
AAATCGTAATCAATAATTGC+AGG	0.433894	6_4:-31268791	None:intergenic
AAATGAAAAGACACAGAAAG+AGG	0.579488	6_4:-31263274	None:intergenic
AAATGGGGATCAGGACTTGA+GGG	0.541211	6_4:+31271004	Msa0985220:CDS
AAATTGTTTACTTGGGGTGA+TGG	0.453371	6_4:+31268710	Msa0985220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAAAGACACAGAAAG+AGG	-	chr6_4:31263277-31263296	None:intergenic	30.0%
TTTAGAGAGAGAGAAAAAAG+TGG	+	chr6_4:31263561-31263580	Msa0985220:five_prime_UTR	30.0%
TTAGAGAGAGAGAAAAAAGT+GGG	+	chr6_4:31263562-31263581	Msa0985220:five_prime_UTR	30.0%
AGGGTTCAATCTATCAATAT+CGG	+	chr6_4:31263914-31263933	Msa0985220:intron	30.0%
AAACTAACAACCTTTCTAGA+GGG	-	chr6_4:31263964-31263983	None:intergenic	30.0%
CAAACTAATAACCTTTCTAG+AGG	-	chr6_4:31264162-31264181	None:intergenic	30.0%
TTAATCAGGAGTTTGATAGA+GGG	+	chr6_4:31264574-31264593	Msa0985220:intron	30.0%
CAGAAGATATAGTTTCTGTT+TGG	+	chr6_4:31264679-31264698	Msa0985220:intron	30.0%
CATGTATGTTTGTGTTTGAA+TGG	+	chr6_4:31265403-31265422	Msa0985220:intron	30.0%
ATAGATGTATTTGAGTAGCA+TGG	+	chr6_4:31265433-31265452	Msa0985220:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	31263230	31272234	31263230	ID=Msa0985220;Name=Msa0985220
chr6_4	mRNA	31263230	31272234	31263230	ID=Msa0985220-mRNA-1;Parent=Msa0985220;Name=Msa0985220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=515\|1\|1\|1\|1\|1\|9\|511\|1120
chr6_4	exon	31263230	31263795	31263230	ID=Msa0985220-mRNA-1:exon:8412;Parent=Msa0985220-mRNA-1
chr6_4	exon	31266764	31266850	31266764	ID=Msa0985220-mRNA-1:exon:8413;Parent=Msa0985220-mRNA-1
chr6_4	exon	31267082	31267171	31267082	ID=Msa0985220-mRNA-1:exon:8414;Parent=Msa0985220-mRNA-1
chr6_4	exon	31267310	31267396	31267310	ID=Msa0985220-mRNA-1:exon:8415;Parent=Msa0985220-mRNA-1
chr6_4	exon	31267498	31267617	31267498	ID=Msa0985220-mRNA-1:exon:8416;Parent=Msa0985220-mRNA-1
chr6_4	exon	31267747	31269834	31267747	ID=Msa0985220-mRNA-1:exon:8417;Parent=Msa0985220-mRNA-1
chr6_4	exon	31270174	31270320	31270174	ID=Msa0985220-mRNA-1:exon:8418;Parent=Msa0985220-mRNA-1
chr6_4	exon	31270894	31271432	31270894	ID=Msa0985220-mRNA-1:exon:8419;Parent=Msa0985220-mRNA-1
chr6_4	exon	31271570	31272234	31271570	ID=Msa0985220-mRNA-1:exon:8420;Parent=Msa0985220-mRNA-1
chr6_4	five_prime_UTR	31263230	31263744	31263230	ID=Msa0985220-mRNA-1:five_prime_utr;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31263745	31263795	31263745	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31266764	31266850	31266764	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31267082	31267171	31267082	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31267310	31267396	31267310	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31267498	31267617	31267498	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31267747	31269834	31267747	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31270174	31270320	31270174	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31270894	31271432	31270894	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	CDS	31271570	31271723	31271570	ID=Msa0985220-mRNA-1:cds;Parent=Msa0985220-mRNA-1
chr6_4	three_prime_UTR	31271724	31272234	31271724	ID=Msa0985220-mRNA-1:three_prime_utr;Parent=Msa0985220-mRNA-1

Gene Sequence

>Msa0985220

ATGGCAGATCTTGTTAACTTAGGGAATGCTGCTGATCGTAACATTGAGCAAGCACTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAGGGAAAGCCAAAATTTTGTCCATTTAGACTCTCTCCTGATGGATCATCTTTAATCTGGATTTCAAGTGGCGGCGAAAAAAAACTGAAGTTATCTTCTGTCTCAAGAATCATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACCTGCGTCCTGAAAAGGATTATGTGTCTTTTTCACTTATTTATAATAACGGAAAGCGGTCTCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGATGTGTGGATTTCTGGTCTCAAAAAACTGATATCCTCAGGTCAAGGTGGTCGGTCTAAAATTGATGGATGGAGTGATGGTGGCCTCAATCTTGATGATAGCAAAGATTTAACATCCAATAGTCCAAGTGGAAGTTCAGCTAGTGCATCACTAGACATCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAGCACATCACCGAACTCCTATCGGCCTGACAATACCTTGAATTCTGAAAGATCACATGCACGATCAGAGTCAACAAATATGCAAGTAAAAGGATCTGGTACTGATACTGTTCGTGTTAGTGTTTCAAGTGCCACATCTAGTCATGGATCAGCACCAGATGACTACGATGCTCTTGCAGATGTGTATATATGGGGGGAAATTATCTGCGAAAACGTCAAAGTCGGTGCAGATAAAAGTGTCCATCATTTCAGCCCAAGGGCAGATGTTCTTCTCCCGAAACCACTGGAATCAAATGTAGTTTTAGATGTACAACATATAGCATGTGGTGTTAGACATGCTTCGTTAGTCACTAGGCAAGGTGAAGTTTTTACGTGGGGTGAAGAATCAGGAGGACGTCTTGGCCATGGTGTTGGGAAGAATCTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACTGTTGACTTTGTTGCATGTGGGGAGTTTCATTCCTGCGCTGTTACGATGACCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGTTGCTTGGTCATGGCTCTAATGCTAGTCATTGGATACCGAAGAGAATTGGAGGTCCGTTAGATGGACTTCAAGTTTCCTTTGTTGCTTGCGGTCCATGGCACACAGCCTTGATTACTTCAACTGGGAAGCTGTTTACATTCGGCGATGGAACTTTCGGTGTCTTGGGACACGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGACTCATTATTAGGGTTGAGAACAATAGCCGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACAATCTATTGCTAGTTTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGGCATGGGGACAAGGAGTCACGGCTTAAACCAACTTGCGTGCCTGCAATTATTGATTACGATTTTAAAAAAATTGCTTGTGGGCACAGTTTGACAGTAGGGCTGACTACATCCGGTCGTGTTTTTACCATGGGAAGTACTGTTTACGGTCAGCTCGGGAATCCTCAGTCCGATGGAAAGCTTCCGTCCTTGGTTGGTGATAAGATTGCGTTGGAATCCGTTGAAGAAATTTCTTGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGTAAAGGTTCAAATGGGAGATTAGGTCATGGAGATCTTGAAGATAGAAAAATGCCAACTTTGGTTGAAGCTTTGAAGGATCGACATGTGAAATATATTGCATGTGGTTCAAATTACTCTGCCGCCATTTGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGTTCTGCTTGTAGGCAAGCATTTGGTTTCACTCGAAAGCGGCACAATTGTTATAATTGTGGGCTTGTGCACTGCCATTCATGCAGTTCAAAGAAAGCATTAAGAGCGGCACTTGCTCCTAATCCTGACAAGCACTACCGCGTGTGTGATTCTTGTTACGCCAAATTGAGCAAGGTTGCAGAAGCTAACAATAATAATCGGAGGAATGCTTTGCCGCGTCTTTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCTAAGAGTGTCCAAGGCTCTTATTCCTTCAAACATGGATTTAATAAAGCAGCTAGATAATAAGGCAGCAAAACAAGGAAAGAAATCCGATACATTCTCGCTTGCTCGCAACTCACAGACGCCTTTGCTACAGCTGAAAGATGTTGTCTTTGCCACTGCTGCTGATCTGAGACGAACAACTCCAAGACCGGTTATTGCACCGTCGGGAGTAAGTACTAGATCCGCATCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACGCCTATTCCAACAATGTCTGGTCTTTCGTTTTCCAAAAATATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTGAATAAAGAAGTGCAGAAGTTACATGCTCAGGTCGAGAGCCTGAAAAACAAATGTGAACGGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGGCACTAGCTACCGAGGAGTCTACTAAATGCAAAGCTGCAAAACAAGTTATAAAGTCACTTACGGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCACCTGAAGCTTATGATGCTGAGAACATTAGACCAGCTTACCTACCAAATGGTCTCGAGTCGAACGGCATCCACTATCCGGATACAAATGGGGATCAGGACTTGAGGGCGGAATCAATCAGTGGCTCAAGTTTGGCCTCCATAGGACTTGAATCCTCTCTGTTCAACAGAACAGCCCGTGATTTGCCTGGAGCCTATGGAACTAATCTCCACCAGCAAATCCGGGGCGTCGTAACCTCTAACGGGACCAGTAATCATCCAGATGTGAAATTGCCGAGTGGGAGCGGTGTGATTCAGTCAAGCAGTAGTAGCTTGTCAGATATTGTTGAAGGGAGGGATTCTGGGAATTTCCGTGATGACGAGAGTGGTTTGAAATCGACAAATGCTGCACTGGCTACTAATAGCAGTAATAATCGAGTTGATGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTGGTGGCCATGCATGATGGAACAAGAGATCTGAAACGAGTGCGATTTAGCCGGAGGAGATTTGGAGAGAACCAAGCCGAGAATTGGTGGTCAGAGAACAAAGACAAGGTATACGAAAAATACAACGTTCGTAGCGTGGACAAGTCTTCTAGCCAAGGAGCGCATAAGGCAGAGGGTGCTGGTTCTCCTGCTTCCCAAACATAG

Protein sequence

>Msa0985220

MADLVNLGNAADRNIEQALIALKKGAQLLKYGRKGKPKFCPFRLSPDGSSLIWISSGGEKKLKLSSVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYNNGKRSLDLICKDKVEADVWISGLKKLISSGQGGRSKIDGWSDGGLNLDDSKDLTSNSPSGSSASASLDISSPDISVSLPSTSPNSYRPDNTLNSERSHARSESTNMQVKGSGTDTVRVSVSSATSSHGSAPDDYDALADVYIWGEIICENVKVGADKSVHHFSPRADVLLPKPLESNVVLDVQHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNASHWIPKRIGGPLDGLQVSFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVDSLLGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKESRLKPTCVPAIIDYDFKKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPSLVGDKIALESVEEISCGAYHVAVLTSKNEVYTWGKGSNGRLGHGDLEDRKMPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPDKHYRVCDSCYAKLSKVAEANNNNRRNALPRLSGENKDRLDKSELRVSKALIPSNMDLIKQLDNKAAKQGKKSDTFSLARNSQTPLLQLKDVVFATAADLRRTTPRPVIAPSGVSTRSASPFSRRSSPPRSATPIPTMSGLSFSKNIADSLKKTNELLNKEVQKLHAQVESLKNKCERQELEVQRSAKKTQEAMALATEESTKCKAAKQVIKSLTAQLKDLAEKLPPEAYDAENIRPAYLPNGLESNGIHYPDTNGDQDLRAESISGSSLASIGLESSLFNRTARDLPGAYGTNLHQQIRGVVTSNGTSNHPDVKLPSGSGVIQSSSSSLSDIVEGRDSGNFRDDESGLKSTNAALATNSSNNRVDAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENKDKVYEKYNVRSVDKSSSQGAHKAEGAGSPASQT*